Cucsat.G4063 (gene) Cucumber (B10) v3

Overview
NameCucsat.G4063
Typegene
OrganismCucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Descriptionprotein EMBRYO SAC DEVELOPMENT ARREST 3, chloroplastic
Locationctg105: 3384437 .. 3385770 (-)
RNA-Seq ExpressionCucsat.G4063
SyntenyCucsat.G4063
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AGTAGTGGTTCATCATAGAGATAAGGAAAGAAGTGTGGATAATGTGGAGAGATCAGTTGTGAGAGATAGATCAGAAAAGAAAAGTATTAGCAAAGACCCAAAGGCATACACAAAAGCTGATTAATTGAAAATGGCTGCTACCTCTACCTCTATCAACATCTTCCCATTTCCCTCCTATCAAATTTTTAGAAGTAAAAGAAAATCATCACCCAATGACATTATTGTTCCTTTTGCTGCACTGCCAACATCTAATTTGCTGCCCAAAAGATGCCAGAAGTGTGGAGGTAAAGGGGCCATTGATTGTCCTGGATGTAAGGTTAATATCATCTTATAACTCGATTCTCTCTCTTTTAGCTCTCCCTTCTTGATTTCCAGTCGTTGTTCAGTGTGTGACTTGACATATATGCATATTCTATGTTGTGCTGCAAGTAATTAACTACAGCTGTTATATTCCTTGATAAGAAAAAGGAAAAGAAAGTGAATGGTGGATAAAATAGAATGTCGATCCCTAGGAACTTACATAAGCAATTCGGTTGATGGGGTTTAGTATGACAAAGATGGATGAGATTGTGAACTCTCTTTAGAGTTGGTGAGCTTCAAGAGTACTTAAAACTATCATTCTTATGTTTTATTAAACCCTCATATTACACACTGCAAATATCCTATCACTTCAAACTCCATATTTCTCACAACTACGAAAGGCTTCCCAATTTCATTTTCTGGTCCTCAAACACTCCATAAGATGATCATCCACAAGCTTCTTATATTGTCAAACTACCCCCTAATTGTTTCAGAAACCTAAAAGGAGATTTTATGACACATATGATTGATTTTAGGGAACGGGAAAGAACAAGAAAAACGGAAACATCTTCGAGCGTTGGAAGTAAGTAATTAATCTCACATTCTAATATACATATCTTTTACTTTGAACTTAAATAACTGAAGGTAGGGCTAATTTGATATTCATAAATTGTTTGATTTAGATGTTTTGAGTGCCAAGGATTTGGATTGAAGAGTTGTCCTCAATGTGGAAAAGGAGGCCTCACTCCAGAGCAAAGGGGAGAAAGATAAATGCATACAACACAACAGCTCCTAAATAAACCCTTTATATATCTATACATATACTTTCAATTTGATTTTTCTATTTTTCCTATTGTAATAATGTGTTAATATATATATCTCATTAGCTTTCTAATTCTTATTATATTTTTGTATATTAAATGTGTTTTATTTTCTTTAATTTTTTCATTTTAAATTTTGGGTGTTTGAGAATATTGTATACTCAAATTATGTCAAAGTAATATAGTTTAAGCCAATGAGCCAAACTTATTTAA

Coding sequence (CDS)

ATGGCTGCTACCTCTACCTCTATCAACATCTTCCCATTTCCCTCCTATCAAATTTTTAGAAGTAAAAGAAAATCATCACCCAATGACATTATTGTTCCTTTTGCTGCACTGCCAACATCTAATTTGCTGCCCAAAAGATGCCAGAAGTGTGGAGGTAAAGGGGCCATTGATTGTCCTGGATGTAAGGGAACGGGAAAGAACAAGAAAAACGGAAACATCTTCGAGCGTTGGAAATGTTTTGAGTGCCAAGGATTTGGATTGAAGAGTTGTCCTCAATGTGGAAAAGGAGGCCTCACTCCAGAGCAAAGGGGAGAAAGATAA

Protein sequence

MAATSTSINIFPFPSYQIFRSKRKSSPNDIIVPFAALPTSNLLPKRCQKCGGKGAIDCPGCKGTGKNKKNGNIFERWKCFECQGFGLKSCPQCGKGGLTPEQRGER
Homology
BLAST of Cucsat.G4063 vs. NCBI nr
Match: XP_004153120.1 (protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic [Cucumis sativus] >KGN61770.1 hypothetical protein Csa_005912 [Cucumis sativus])

HSP 1 Score: 231 bits (589), Expect = 9.75e-77
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 0

Query: 1   MAATSTSINIFPFPSYQIFRSKRKSSPNDIIVPFAALPTSNLLPKRCQKCGGKGAIDCPG 60
           MAATSTSINIFPFPSYQIFRSKRKSSPNDIIVPFAALPTSNLLPKRCQKCGGKGAIDCPG
Sbjct: 1   MAATSTSINIFPFPSYQIFRSKRKSSPNDIIVPFAALPTSNLLPKRCQKCGGKGAIDCPG 60

Query: 61  CKGTGKNKKNGNIFERWKCFECQGFGLKSCPQCGKGGLTPEQRGER 106
           CKGTGKNKKNGNIFERWKCFECQGFGLKSCPQCGKGGLTPEQRGER
Sbjct: 61  CKGTGKNKKNGNIFERWKCFECQGFGLKSCPQCGKGGLTPEQRGER 106

BLAST of Cucsat.G4063 vs. NCBI nr
Match: XP_008459263.1 (PREDICTED: protein EMBRYO SAC DEVELOPMENT ARREST 3, chloroplastic [Cucumis melo])

HSP 1 Score: 213 bits (541), Expect = 2.13e-69
Identity = 99/104 (95.19%), Postives = 100/104 (96.15%), Query Frame = 0

Query: 3   ATSTSINIFPFPSYQIFRSKRKSSPNDIIVPFAALPTSNLLPKRCQKCGGKGAIDCPGCK 62
           +TSTSINIFPFPSYQI RSK KSSPN I VPFAALPTSNLLPKRCQKCGGKGAIDCPGCK
Sbjct: 5   STSTSINIFPFPSYQIVRSKTKSSPN-ITVPFAALPTSNLLPKRCQKCGGKGAIDCPGCK 64

Query: 63  GTGKNKKNGNIFERWKCFECQGFGLKSCPQCGKGGLTPEQRGER 106
           GTGKNKKNGNIFERWKCFECQGFGLKSCPQCGKGGLTPEQRGER
Sbjct: 65  GTGKNKKNGNIFERWKCFECQGFGLKSCPQCGKGGLTPEQRGER 107

BLAST of Cucsat.G4063 vs. NCBI nr
Match: XP_038901776.1 (protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic isoform X1 [Benincasa hispida])

HSP 1 Score: 164 bits (415), Expect = 4.65e-50
Identity = 78/108 (72.22%), Postives = 88/108 (81.48%), Query Frame = 0

Query: 3   ATSTSINIFPFPSYQIFRSK----RKSSPNDIIVPFAALPTSNLLPKRCQKCGGKGAIDC 62
           A ++S NIFPF  Y++ RS      K+  ++I +  AA   S LLPKRCQKCGGKGAIDC
Sbjct: 10  AMASSNNIFPFSPYRLVRSSPPYTSKTKSSNISLAAAAAARS-LLPKRCQKCGGKGAIDC 69

Query: 63  PGCKGTGKNKKNGNIFERWKCFECQGFGLKSCPQCGKGGLTPEQRGER 106
           PGCKGTGKNKKNGNIFERWKCF+CQGFGLKSCP+CGKGGLTPEQRGER
Sbjct: 70  PGCKGTGKNKKNGNIFERWKCFDCQGFGLKSCPECGKGGLTPEQRGER 116

BLAST of Cucsat.G4063 vs. NCBI nr
Match: XP_022963874.1 (protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic [Cucurbita moschata])

HSP 1 Score: 158 bits (400), Expect = 8.18e-48
Identity = 75/109 (68.81%), Postives = 88/109 (80.73%), Query Frame = 0

Query: 1   MAATSTSINIFPFPSYQIF---RSKRKSSPNDIIVPFAALPTSNLLPKRCQKCGGKGAID 60
           ++ ++ S + FPFP +      ++K +S P++I  PFAA P  + LPKRCQ CGGKGAID
Sbjct: 8   VSKSNNSTSPFPFPPHGFAILPQNKCRSKPSNI--PFAAAPKFS-LPKRCQTCGGKGAID 67

Query: 61  CPGCKGTGKNKKNGNIFERWKCFECQGFGLKSCPQCGKGGLTPEQRGER 106
           CPGCKGTG+NKKNGNIFERWKCFECQGFGLKSCP CGKGGLTPEQRGER
Sbjct: 68  CPGCKGTGRNKKNGNIFERWKCFECQGFGLKSCPDCGKGGLTPEQRGER 113

BLAST of Cucsat.G4063 vs. NCBI nr
Match: XP_023521952.1 (protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic-like [Cucurbita pepo subsp. pepo] >XP_023553311.1 protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023553319.1 protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 157 bits (398), Expect = 1.65e-47
Identity = 74/99 (74.75%), Postives = 82/99 (82.83%), Query Frame = 0

Query: 11  FPFPSYQIF---RSKRKSSPNDIIVPFAALPTSNLLPKRCQKCGGKGAIDCPGCKGTGKN 70
           FPFP +      ++K +S P++I  PFAA P  + LPKRCQ CGGKGAIDCPGCKGTG+N
Sbjct: 18  FPFPPHGFAILPQNKSRSKPSNI--PFAAAPKFS-LPKRCQTCGGKGAIDCPGCKGTGRN 77

Query: 71  KKNGNIFERWKCFECQGFGLKSCPQCGKGGLTPEQRGER 106
           KKNGNIFERWKCFECQGFGLKSCP CGKGGLTPEQRGER
Sbjct: 78  KKNGNIFERWKCFECQGFGLKSCPDCGKGGLTPEQRGER 113

BLAST of Cucsat.G4063 vs. ExPASy TrEMBL
Match: A0A0A0LIM5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G238860 PE=4 SV=1)

HSP 1 Score: 231 bits (589), Expect = 4.72e-77
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 0

Query: 1   MAATSTSINIFPFPSYQIFRSKRKSSPNDIIVPFAALPTSNLLPKRCQKCGGKGAIDCPG 60
           MAATSTSINIFPFPSYQIFRSKRKSSPNDIIVPFAALPTSNLLPKRCQKCGGKGAIDCPG
Sbjct: 1   MAATSTSINIFPFPSYQIFRSKRKSSPNDIIVPFAALPTSNLLPKRCQKCGGKGAIDCPG 60

Query: 61  CKGTGKNKKNGNIFERWKCFECQGFGLKSCPQCGKGGLTPEQRGER 106
           CKGTGKNKKNGNIFERWKCFECQGFGLKSCPQCGKGGLTPEQRGER
Sbjct: 61  CKGTGKNKKNGNIFERWKCFECQGFGLKSCPQCGKGGLTPEQRGER 106

BLAST of Cucsat.G4063 vs. ExPASy TrEMBL
Match: A0A1S3C9W1 (protein EMBRYO SAC DEVELOPMENT ARREST 3, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103498437 PE=4 SV=1)

HSP 1 Score: 213 bits (541), Expect = 1.03e-69
Identity = 99/104 (95.19%), Postives = 100/104 (96.15%), Query Frame = 0

Query: 3   ATSTSINIFPFPSYQIFRSKRKSSPNDIIVPFAALPTSNLLPKRCQKCGGKGAIDCPGCK 62
           +TSTSINIFPFPSYQI RSK KSSPN I VPFAALPTSNLLPKRCQKCGGKGAIDCPGCK
Sbjct: 5   STSTSINIFPFPSYQIVRSKTKSSPN-ITVPFAALPTSNLLPKRCQKCGGKGAIDCPGCK 64

Query: 63  GTGKNKKNGNIFERWKCFECQGFGLKSCPQCGKGGLTPEQRGER 106
           GTGKNKKNGNIFERWKCFECQGFGLKSCPQCGKGGLTPEQRGER
Sbjct: 65  GTGKNKKNGNIFERWKCFECQGFGLKSCPQCGKGGLTPEQRGER 107

BLAST of Cucsat.G4063 vs. ExPASy TrEMBL
Match: A0A6J1HLG5 (protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111464051 PE=4 SV=1)

HSP 1 Score: 158 bits (400), Expect = 3.96e-48
Identity = 75/109 (68.81%), Postives = 88/109 (80.73%), Query Frame = 0

Query: 1   MAATSTSINIFPFPSYQIF---RSKRKSSPNDIIVPFAALPTSNLLPKRCQKCGGKGAID 60
           ++ ++ S + FPFP +      ++K +S P++I  PFAA P  + LPKRCQ CGGKGAID
Sbjct: 8   VSKSNNSTSPFPFPPHGFAILPQNKCRSKPSNI--PFAAAPKFS-LPKRCQTCGGKGAID 67

Query: 61  CPGCKGTGKNKKNGNIFERWKCFECQGFGLKSCPQCGKGGLTPEQRGER 106
           CPGCKGTG+NKKNGNIFERWKCFECQGFGLKSCP CGKGGLTPEQRGER
Sbjct: 68  CPGCKGTGRNKKNGNIFERWKCFECQGFGLKSCPDCGKGGLTPEQRGER 113

BLAST of Cucsat.G4063 vs. ExPASy TrEMBL
Match: A0A6J1JSI3 (protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111487154 PE=4 SV=1)

HSP 1 Score: 154 bits (390), Expect = 1.32e-46
Identity = 73/99 (73.74%), Postives = 81/99 (81.82%), Query Frame = 0

Query: 11  FPFPSYQIF---RSKRKSSPNDIIVPFAALPTSNLLPKRCQKCGGKGAIDCPGCKGTGKN 70
           FPFP +      ++K +S P++I  PFAA P  + LPKRCQ CGGKGAIDC GCKGTG+N
Sbjct: 18  FPFPPHGFAILPQNKSRSKPSNI--PFAAAPKFS-LPKRCQTCGGKGAIDCTGCKGTGRN 77

Query: 71  KKNGNIFERWKCFECQGFGLKSCPQCGKGGLTPEQRGER 106
           KKNGNIFERWKCFECQGFGLKSCP CGKGGLTPEQRGER
Sbjct: 78  KKNGNIFERWKCFECQGFGLKSCPDCGKGGLTPEQRGER 113

BLAST of Cucsat.G4063 vs. ExPASy TrEMBL
Match: A0A6J1DHW0 (uncharacterized protein LOC111020203 OS=Momordica charantia OX=3673 GN=LOC111020203 PE=4 SV=1)

HSP 1 Score: 150 bits (380), Expect = 5.49e-45
Identity = 74/112 (66.07%), Postives = 83/112 (74.11%), Query Frame = 0

Query: 2   AATSTSIN-IFPFP------SYQIFRSKRKSSPNDIIVPFAALPTSNLLPKRCQKCGGKG 61
           + +S +IN IFPFP       +++  S          + F A  T + LPKRCQKCGGKG
Sbjct: 10  SCSSHTINTIFPFPFPPPPPPHRLLISPPNKFKRRSNISFGAAATFS-LPKRCQKCGGKG 69

Query: 62  AIDCPGCKGTGKNKKNGNIFERWKCFECQGFGLKSCPQCGKGGLTPEQRGER 106
           AIDCPGCKGTGKNKKNGNIFERWKCFECQGFGLKSCP+CG GGLTPEQRGER
Sbjct: 70  AIDCPGCKGTGKNKKNGNIFERWKCFECQGFGLKSCPECGNGGLTPEQRGER 120

BLAST of Cucsat.G4063 vs. TAIR 10
Match: AT1G22630.1 (unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 87 Blast hits to 86 proteins in 34 species: Archae - 0; Bacteria - 13; Metazoa - 27; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). )

HSP 1 Score: 131.3 bits (329), Expect = 4.5e-31
Identity = 53/62 (85.48%), Postives = 59/62 (95.16%), Query Frame = 0

Query: 45  KRCQKCGGKGAIDCPGCKGTGKNKKNGNIFERWKCFECQGFGLKSCPQCGKGGLTPEQRG 104
           K C+ CG KGAI+CPGCKGTGKNKKNGN+FERWKCF+CQGFG+KSCP+CGKGGLTPEQRG
Sbjct: 49  KSCETCGAKGAIECPGCKGTGKNKKNGNMFERWKCFDCQGFGMKSCPKCGKGGLTPEQRG 108

Query: 105 ER 107
           ER
Sbjct: 109 ER 110

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_004153120.19.75e-77100.00protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic [Cucumis sativus] >KGN61770.1 hy... [more]
XP_008459263.12.13e-6995.19PREDICTED: protein EMBRYO SAC DEVELOPMENT ARREST 3, chloroplastic [Cucumis melo][more]
XP_038901776.14.65e-5072.22protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic isoform X1 [Benincasa hispida][more]
XP_022963874.18.18e-4868.81protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic [Cucurbita moschata][more]
XP_023521952.11.65e-4774.75protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic-like [Cucurbita pepo subsp. pepo... [more]
Match NameE-valueIdentityDescription
A0A0A0LIM54.72e-77100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G238860 PE=4 SV=1[more]
A0A1S3C9W11.03e-6995.19protein EMBRYO SAC DEVELOPMENT ARREST 3, chloroplastic OS=Cucumis melo OX=3656 G... [more]
A0A6J1HLG53.96e-4868.81protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic OS=Cucurbita moschata OX=3662 GN... [more]
A0A6J1JSI31.32e-4673.74protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A6J1DHW05.49e-4566.07uncharacterized protein LOC111020203 OS=Momordica charantia OX=3673 GN=LOC111020... [more]
Match NameE-valueIdentityDescription
AT1G22630.14.5e-3185.48unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXP... [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR15852:SF55PROTEIN EMBRYO SAC DEVELOPMENT ARREST 3, CHLOROPLASTIC ISOFORM X1coord: 33..106
NoneNo IPR availablePANTHERPTHR15852PLASTID TRANSCRIPTIONALLY ACTIVE PROTEINcoord: 33..106

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsat.G4063.T1Cucsat.G4063.T1mRNA