Cucsat.G4063 (gene) Cucumber (B10) v3
Overview
Sequences
The following sequences are available for this feature:
Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.AGTAGTGGTTCATCATAGAGATAAGGAAAGAAGTGTGGATAATGTGGAGAGATCAGTTGTGAGAGATAGATCAGAAAAGAAAAGTATTAGCAAAGACCCAAAGGCATACACAAAAGCTGATTAATTGAAAATGGCTGCTACCTCTACCTCTATCAACATCTTCCCATTTCCCTCCTATCAAATTTTTAGAAGTAAAAGAAAATCATCACCCAATGACATTATTGTTCCTTTTGCTGCACTGCCAACATCTAATTTGCTGCCCAAAAGATGCCAGAAGTGTGGAGGTAAAGGGGCCATTGATTGTCCTGGATGTAAGGTTAATATCATCTTATAACTCGATTCTCTCTCTTTTAGCTCTCCCTTCTTGATTTCCAGTCGTTGTTCAGTGTGTGACTTGACATATATGCATATTCTATGTTGTGCTGCAAGTAATTAACTACAGCTGTTATATTCCTTGATAAGAAAAAGGAAAAGAAAGTGAATGGTGGATAAAATAGAATGTCGATCCCTAGGAACTTACATAAGCAATTCGGTTGATGGGGTTTAGTATGACAAAGATGGATGAGATTGTGAACTCTCTTTAGAGTTGGTGAGCTTCAAGAGTACTTAAAACTATCATTCTTATGTTTTATTAAACCCTCATATTACACACTGCAAATATCCTATCACTTCAAACTCCATATTTCTCACAACTACGAAAGGCTTCCCAATTTCATTTTCTGGTCCTCAAACACTCCATAAGATGATCATCCACAAGCTTCTTATATTGTCAAACTACCCCCTAATTGTTTCAGAAACCTAAAAGGAGATTTTATGACACATATGATTGATTTTAGGGAACGGGAAAGAACAAGAAAAACGGAAACATCTTCGAGCGTTGGAAGTAAGTAATTAATCTCACATTCTAATATACATATCTTTTACTTTGAACTTAAATAACTGAAGGTAGGGCTAATTTGATATTCATAAATTGTTTGATTTAGATGTTTTGAGTGCCAAGGATTTGGATTGAAGAGTTGTCCTCAATGTGGAAAAGGAGGCCTCACTCCAGAGCAAAGGGGAGAAAGATAAATGCATACAACACAACAGCTCCTAAATAAACCCTTTATATATCTATACATATACTTTCAATTTGATTTTTCTATTTTTCCTATTGTAATAATGTGTTAATATATATATCTCATTAGCTTTCTAATTCTTATTATATTTTTGTATATTAAATGTGTTTTATTTTCTTTAATTTTTTCATTTTAAATTTTGGGTGTTTGAGAATATTGTATACTCAAATTATGTCAAAGTAATATAGTTTAAGCCAATGAGCCAAACTTATTTAA ATGGCTGCTACCTCTACCTCTATCAACATCTTCCCATTTCCCTCCTATCAAATTTTTAGAAGTAAAAGAAAATCATCACCCAATGACATTATTGTTCCTTTTGCTGCACTGCCAACATCTAATTTGCTGCCCAAAAGATGCCAGAAGTGTGGAGGTAAAGGGGCCATTGATTGTCCTGGATGTAAGGGAACGGGAAAGAACAAGAAAAACGGAAACATCTTCGAGCGTTGGAAATGTTTTGAGTGCCAAGGATTTGGATTGAAGAGTTGTCCTCAATGTGGAAAAGGAGGCCTCACTCCAGAGCAAAGGGGAGAAAGATAA MAATSTSINIFPFPSYQIFRSKRKSSPNDIIVPFAALPTSNLLPKRCQKCGGKGAIDCPGCKGTGKNKKNGNIFERWKCFECQGFGLKSCPQCGKGGLTPEQRGER Homology
BLAST of Cucsat.G4063 vs. NCBI nr
Match: XP_004153120.1 (protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic [Cucumis sativus] >KGN61770.1 hypothetical protein Csa_005912 [Cucumis sativus]) HSP 1 Score: 231 bits (589), Expect = 9.75e-77 Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 0
BLAST of Cucsat.G4063 vs. NCBI nr
Match: XP_008459263.1 (PREDICTED: protein EMBRYO SAC DEVELOPMENT ARREST 3, chloroplastic [Cucumis melo]) HSP 1 Score: 213 bits (541), Expect = 2.13e-69 Identity = 99/104 (95.19%), Postives = 100/104 (96.15%), Query Frame = 0
BLAST of Cucsat.G4063 vs. NCBI nr
Match: XP_038901776.1 (protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic isoform X1 [Benincasa hispida]) HSP 1 Score: 164 bits (415), Expect = 4.65e-50 Identity = 78/108 (72.22%), Postives = 88/108 (81.48%), Query Frame = 0
BLAST of Cucsat.G4063 vs. NCBI nr
Match: XP_022963874.1 (protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic [Cucurbita moschata]) HSP 1 Score: 158 bits (400), Expect = 8.18e-48 Identity = 75/109 (68.81%), Postives = 88/109 (80.73%), Query Frame = 0
BLAST of Cucsat.G4063 vs. NCBI nr
Match: XP_023521952.1 (protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic-like [Cucurbita pepo subsp. pepo] >XP_023553311.1 protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023553319.1 protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic-like isoform X2 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 157 bits (398), Expect = 1.65e-47 Identity = 74/99 (74.75%), Postives = 82/99 (82.83%), Query Frame = 0
BLAST of Cucsat.G4063 vs. ExPASy TrEMBL
Match: A0A0A0LIM5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G238860 PE=4 SV=1) HSP 1 Score: 231 bits (589), Expect = 4.72e-77 Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 0
BLAST of Cucsat.G4063 vs. ExPASy TrEMBL
Match: A0A1S3C9W1 (protein EMBRYO SAC DEVELOPMENT ARREST 3, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103498437 PE=4 SV=1) HSP 1 Score: 213 bits (541), Expect = 1.03e-69 Identity = 99/104 (95.19%), Postives = 100/104 (96.15%), Query Frame = 0
BLAST of Cucsat.G4063 vs. ExPASy TrEMBL
Match: A0A6J1HLG5 (protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111464051 PE=4 SV=1) HSP 1 Score: 158 bits (400), Expect = 3.96e-48 Identity = 75/109 (68.81%), Postives = 88/109 (80.73%), Query Frame = 0
BLAST of Cucsat.G4063 vs. ExPASy TrEMBL
Match: A0A6J1JSI3 (protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111487154 PE=4 SV=1) HSP 1 Score: 154 bits (390), Expect = 1.32e-46 Identity = 73/99 (73.74%), Postives = 81/99 (81.82%), Query Frame = 0
BLAST of Cucsat.G4063 vs. ExPASy TrEMBL
Match: A0A6J1DHW0 (uncharacterized protein LOC111020203 OS=Momordica charantia OX=3673 GN=LOC111020203 PE=4 SV=1) HSP 1 Score: 150 bits (380), Expect = 5.49e-45 Identity = 74/112 (66.07%), Postives = 83/112 (74.11%), Query Frame = 0
BLAST of Cucsat.G4063 vs. TAIR 10
Match: AT1G22630.1 (unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 87 Blast hits to 86 proteins in 34 species: Archae - 0; Bacteria - 13; Metazoa - 27; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). ) HSP 1 Score: 131.3 bits (329), Expect = 4.5e-31 Identity = 53/62 (85.48%), Postives = 59/62 (95.16%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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