Cucsat.G3960 (gene) Cucumber (B10) v3

Overview


Name	Cucsat.G3960
Type	gene
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	glycine-rich cell wall structural protein 1-like
Location	ctg105: 884911 .. 886093 (-)
RNA-Seq Expression	Cucsat.G3960
Synteny	Cucsat.G3960

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AGGTGACTTCAATAAATCTAGAGAGTTGAAAGAGACGAAAATGGCAAAATATTTTGTCATTCTGATTACATTTGTTTTCTTAATCATGAATGTGGATGGCCGCAACGTTCCGGGTAAATATCGTTAAACCATACCTAAACTTAAATACTTAATCTTATCAATTACAATATATTCAGATATGTTTTTCATAACTAACATCATTTGTTTTTACGCTTTTGTTCTTAAATTTTGTGTTTGTACTTTTACTACTTTTTTTTTTTAATGGATTTCATGGGTTTTTTTTAAGAAATAATTGAATTTTCAGTTCAATTATTCTAAAAAGAAAAAGTAAGCTTGTAGAAACTACTCTTTTTCTAAAAAAGAAAATTATAAAAAAAAGAATAGACAAAAGGAACACGAGGAAATAATTTATGGACTGTAATCAGTGCTTATAAACTCAATTTTAAAATTATAAAATAAAAAACAAAATAAATTGTAAAAGGACTCTGAAACTATTAACATTTGTTCTTTTTACAATAATATCAAATTATCACGTACAAATGTGCAATAGAGATTTAAGTCATTGTTTTTTTTTTAATAAAAGTAAGTAAAAGTACTTAAATCACTAACTTATGCGATTAAAAATTAGCATAATGCACATTGATTATCAAATAATAAAAGAGAGAAAATTATATGAACTTGGGTTCCCCAAAAAAAGAAACAGAAAGGAATTATATTAAATCGACGCCATGGAAAGGGCATGGACAAATTTTTCTAGTTCAAAGCATGAAAGTCAAAGTTATAAATTAAACCATCAACCTTTAAAATAGTATAACTCATGCTTTAATCAATGAGCTATGCTTTGGATTCTCAAGATAAAATCGAATACTTCAATTACTTTATATAAGAAGAGCAAGGAATATACACATGCATGGTCTCTCTATCCTACTTTAATTTGATATAATTATATTAAACAACAGCTAAAATCAAATCAAATGTTGTTTTGCTAACGTATTCTTCACATAGGAGCTGGTGGTCGTCGGCAGGAGAAGTACCGAACCCTAGAACGGGCAGCAGCACCCGTGGCGGAACCACCATCCAGAGGCGGCGTTGACGACCAAAAGAACATATTTGGTGGAGTTGGGGCTTTTGCAGGAATGGGTGGCTACATTGGAGGGTTGTTTCCACATCTTGGTGGGGTTGGGGTAATCGGCAAGTACGGTGGAATTGGTGGTGGCTTTGGAGTTGGTCACGGTGGCTTCGGAGGCGGAGTTGGAGGTGTTGGTGGCATAGGTGGTGGCCTTGTGCCATTTCCTTGAGCAATATTTTATATATTGTGGATGAACACATGAATCTACCGCCGTGAGGTTTTTTCTATTGTGAATGTGTTTGCGTTTTTTGTTTGTGTTGTGGATTAAGAATATTTTAGATTTGAGGCAAAGTTGAATACTTTTTCTTATATATTGTTTTTGCATTATTTTCTTTTTCCTTATGGT

Coding sequence (CDS)

GGTGACTTCAATAAATCTAGAGAGTTGAAAGAGACGAAAATGGCAAAATATTTTGTCATTCTGATTACATTTGTTTTCTTAATCATGAATGTGGATGGCCGCAACGTTCCGGCTGGTGGTCGTCGGCAGGAGAAGTACCGAACCCTAGAACGGGCAGCAGCACCCGTGGCGGAACCACCATCCAGAGGCGGCGTTGACGACCAAAAGAACATATTTGGTGGAGTTGGGGCTTTTGCAGGAATGGGTGGCTACATTGGAGGGTTGTTTCCACATCTTGGTGGGGTTGGGGTAATCGGCAAGTACGGTGGAATTGGTGGTGGCTTTGGAGTTGGTCACGGTGGCTTCGGAGGCGGAGTTGGAGGTGTTGGTGGCATAGGTGGTGGCCTTGTGCCATTTCCTTGA

Protein sequence

GDFNKSRELKETKMAKYFVILITFVFLIMNVDGRNVPAGGRRQEKYRTLERAAAPVAEPPSRGGVDDQKNIFGGVGAFAGMGGYIGGLFPHLGGVGVIGKYGGIGGGFGVGHGGFGGGVGGVGGIGGGLVPFP

Homology

[Close]

BLAST of Cucsat.G3960 vs. NCBI nr
Match: XP_031736587.1 (glycine-rich protein 5-like isoform X3 [Cucumis sativus])

HSP 1 Score: 180 bits (457), Expect = 1.62e-56
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0


Query: 3   GAGGRRQEKYRTLERAAAPVAEPPSRGGVDDQKNIFGGVGAFAGMGGYIGGLFPHLGGVG 62
           GAGGRRQEKYRTLERAAAPVAEPPSRGGVDDQKNIFGGVGAFAGMGGYIGGLFPHLGGVG
Sbjct: 25  GAGGRRQEKYRTLERAAAPVAEPPSRGGVDDQKNIFGGVGAFAGMGGYIGGLFPHLGGVG 84

Query: 63  VIGKYGGIGGGFGVGHGGFGGGVGGVGGIGGGLVPFP 99
           VIGKYGGIGGGFGVGHGGFGGGVGGVGGIGGGLVPFP
Sbjct: 85  VIGKYGGIGGGFGVGHGGFGGGVGGVGGIGGGLVPFP 121

[Close]

BLAST of Cucsat.G3960 vs. NCBI nr
Match: XP_031736588.1 (glycine-rich RNA-binding protein 3, mitochondrial-like isoform X4 [Cucumis sativus])

HSP 1 Score: 172 bits (435), Expect = 2.43e-53
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0


Query: 1  MHGAGGRRQEKYRTLERAAAPVAEPPSRGGVDDQKNIFGGVGAFAGMGGYIGGLFPHLGG 60
          MHGAGGRRQEKYRTLERAAAPVAEPPSRGGVDDQKNIFGGVGAFAGMGGYIGGLFPHLGG
Sbjct: 1  MHGAGGRRQEKYRTLERAAAPVAEPPSRGGVDDQKNIFGGVGAFAGMGGYIGGLFPHLGG 60

Query: 61 VGVIGKYGGIGGGFGVGHGGFGGGVGGVGGIG 92
          VGVIGKYGGIGGGFGVGHGGFGGGVGGVGGIG
Sbjct: 61 VGVIGKYGGIGGGFGVGHGGFGGGVGGVGGIG 92

[Close]

BLAST of Cucsat.G3960 vs. NCBI nr
Match: KAE8651790.1 (hypothetical protein Csa_006305 [Cucumis sativus])

HSP 1 Score: 166 bits (421), Expect = 4.12e-51
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0


Query: 3  GAGGRRQEKYRTLERAAAPVAEPPSRGGVDDQKNIFGGVGAFAGMGGYIGGLFPHLGGVG 62
          GAGGRRQEKYRTLERAAAPVAEPPSRGGVDDQKNIFGGVGAFAGMGGYIGGLFPHLGGVG
Sbjct: 10 GAGGRRQEKYRTLERAAAPVAEPPSRGGVDDQKNIFGGVGAFAGMGGYIGGLFPHLGGVG 69

Query: 63 VIGKYGGIGGGFGVGHGGFGGGVGGVGGIG 92
          VIGKYGGIGGGFGVGHGGFGGGVGGVGGIG
Sbjct: 70 VIGKYGGIGGGFGVGHGGFGGGVGGVGGIG 99

[Close]

BLAST of Cucsat.G3960 vs. NCBI nr
Match: XP_031736585.1 (elastin-like isoform X1 [Cucumis sativus])

HSP 1 Score: 166 bits (421), Expect = 6.61e-51
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0


Query: 3   GAGGRRQEKYRTLERAAAPVAEPPSRGGVDDQKNIFGGVGAFAGMGGYIGGLFPHLGGVG 62
           GAGGRRQEKYRTLERAAAPVAEPPSRGGVDDQKNIFGGVGAFAGMGGYIGGLFPHLGGVG
Sbjct: 25  GAGGRRQEKYRTLERAAAPVAEPPSRGGVDDQKNIFGGVGAFAGMGGYIGGLFPHLGGVG 84

Query: 63  VIGKYGGIGGGFGVGHGGFGGGVGGVGGIG 92
           VIGKYGGIGGGFGVGHGGFGGGVGGVGGIG
Sbjct: 85  VIGKYGGIGGGFGVGHGGFGGGVGGVGGIG 114

[Close]

BLAST of Cucsat.G3960 vs. NCBI nr
Match: XP_031736586.1 (ctenidin-3-like isoform X2 [Cucumis sativus])

HSP 1 Score: 164 bits (415), Expect = 5.26e-50
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 0


Query: 4   AGGRRQEKYRTLERAAAPVAEPPSRGGVDDQKNIFGGVGAFAGMGGYIGGLFPHLGGVGV 63
           AGGRRQEKYRTLERAAAPVAEPPSRGGVDDQKNIFGGVGAFAGMGGYIGGLFPHLGGVGV
Sbjct: 25  AGGRRQEKYRTLERAAAPVAEPPSRGGVDDQKNIFGGVGAFAGMGGYIGGLFPHLGGVGV 84

Query: 64  IGKYGGIGGGFGVGHGGFGGGVGGVGGIG 92
           IGKYGGIGGGFGVGHGGFGGGVGGVGGIG
Sbjct: 85  IGKYGGIGGGFGVGHGGFGGGVGGVGGIG 113

[Close]

BLAST of Cucsat.G3960 vs. ExPASy TrEMBL
Match: A0A5D3D259 (Glycine-rich cell wall structural protein 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold96G001010 PE=4 SV=1)

HSP 1 Score: 152 bits (385), Expect = 7.16e-46
Identity = 81/95 (85.26%), Postives = 86/95 (90.53%), Query Frame = 0


Query: 5   GGRRQEKYRTLERAAAPVAEPPSRGGVDDQKNIFGGVGAFAGMGGYIGGLFPHLGGVGVI 64
           G  RQ +Y+TLERAA+PVAEPP RGGVDDQKNIFGGVG F GMGGYIGGLFPHLGGVG I
Sbjct: 26  GASRQGEYQTLERAASPVAEPPCRGGVDDQKNIFGGVGGFTGMGGYIGGLFPHLGGVGTI 85

Query: 65  GKYGGIGGGFGVGHGGFGGGVGGVGGIGGGLVPFP 99
           GKYGGIGGGFG GHGGFG GVGGVGG+GGG+VPFP
Sbjct: 86  GKYGGIGGGFGFGHGGFGAGVGGVGGVGGGVVPFP 120

[Close]

BLAST of Cucsat.G3960 vs. ExPASy TrEMBL
Match: A0A1S3CEA9 (glycine-rich cell wall structural protein 1-like OS=Cucumis melo OX=3656 GN=LOC103499502 PE=4 SV=1)

HSP 1 Score: 152 bits (385), Expect = 7.16e-46
Identity = 81/95 (85.26%), Postives = 86/95 (90.53%), Query Frame = 0


Query: 5   GGRRQEKYRTLERAAAPVAEPPSRGGVDDQKNIFGGVGAFAGMGGYIGGLFPHLGGVGVI 64
           G  RQ +Y+TLERAA+PVAEPP RGGVDDQKNIFGGVG F GMGGYIGGLFPHLGGVG I
Sbjct: 26  GASRQGEYQTLERAASPVAEPPCRGGVDDQKNIFGGVGGFTGMGGYIGGLFPHLGGVGTI 85

Query: 65  GKYGGIGGGFGVGHGGFGGGVGGVGGIGGGLVPFP 99
           GKYGGIGGGFG GHGGFG GVGGVGG+GGG+VPFP
Sbjct: 86  GKYGGIGGGFGFGHGGFGAGVGGVGGVGGGVVPFP 120

[Close]

BLAST of Cucsat.G3960 vs. ExPASy TrEMBL
Match: A0A6J1KIQ3 (glycine-rich protein 5-like OS=Cucurbita maxima OX=3661 GN=LOC111494807 PE=4 SV=1)

HSP 1 Score: 122 bits (306), Expect = 7.64e-34
Identity = 70/85 (82.35%), Postives = 74/85 (87.06%), Query Frame = 0


Query: 15  LERAAAPVAEPPSRGGVDDQKNIFGGVGAFAGMGGYIGGLFPHLGGVGVIGKYGGIGGGF 74
           L+ A APVA  PS   VD QKNI+GGVG FAGMGGYIGGLFPHLGGVGVIGKYGGIGGG 
Sbjct: 37  LDLAVAPVAGQPSSNDVD-QKNIYGGVGGFAGMGGYIGGLFPHLGGVGVIGKYGGIGGGI 96

Query: 75  GVGHGGFGGGVGGVGGIGGGLVPFP 99
           G GHGGFGGGVGGVGG+GGG+VPFP
Sbjct: 97  GFGHGGFGGGVGGVGGVGGGVVPFP 120

[Close]

BLAST of Cucsat.G3960 vs. ExPASy TrEMBL
Match: A0A6J1HL05 (glycine-rich protein 5-like OS=Cucurbita moschata OX=3662 GN=LOC111464508 PE=4 SV=1)

HSP 1 Score: 122 bits (306), Expect = 7.64e-34
Identity = 70/85 (82.35%), Postives = 74/85 (87.06%), Query Frame = 0


Query: 15  LERAAAPVAEPPSRGGVDDQKNIFGGVGAFAGMGGYIGGLFPHLGGVGVIGKYGGIGGGF 74
           L+ A APVA  PS   VD QKNI+GGVG FAGMGGYIGGLFPHLGGVGVIGKYGGIGGG 
Sbjct: 37  LDLAVAPVAGQPSSNDVD-QKNIYGGVGGFAGMGGYIGGLFPHLGGVGVIGKYGGIGGGI 96

Query: 75  GVGHGGFGGGVGGVGGIGGGLVPFP 99
           G GHGGFGGGVGGVGG+GGG+VPFP
Sbjct: 97  GFGHGGFGGGVGGVGGVGGGVVPFP 120

[Close]

BLAST of Cucsat.G3960 vs. ExPASy TrEMBL
Match: A0A6J1CDU6 (WW domain-containing protein C660.06 OS=Momordica charantia OX=3673 GN=LOC111009813 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 2.41e-23
Identity = 68/106 (64.15%), Postives = 77/106 (72.64%), Query Frame = 0


Query: 7   RRQEKYRTLERAAAPVAEPPSRGGVDDQKNI-FGGVGAFAGMGGYIGGLFPHLG--GVGV 66
           R  +K +TLE A  PVA+PPS GGV +QK I FGGVG FAGMGG++GGLFPHLG  GVG 
Sbjct: 30  RSDDKDQTLELAPTPVADPPSSGGVREQKQIIFGGVGGFAGMGGFVGGLFPHLGFGGVGG 89

Query: 67  IGKYGGIGGGFGV------GHGGFGGGVGGVGG----IGGGLVPFP 99
           IGK+GGIGGG G+      G GG GGG GGVGG    +GGGL PFP
Sbjct: 90  IGKFGGIGGGTGIIPGGVGGIGGVGGGAGGVGGGVGGVGGGL-PFP 134

[Close]

BLAST of Cucsat.G3960 vs. TAIR 10
Match: AT1G04660.1 (glycine-rich protein )

HSP 1 Score: 48.1 bits (113), Expect = 4.6e-06
Identity = 46/86 (53.49%), Postives = 55/86 (63.95%), Query Frame = 0


Query: 25  PPSRGGVDDQKNIFG--GVGAFAGMGGY--IGGL-FPHLGGVGVIGKYGGIGGGFGVGH- 84
           PP    V D+K I G  GVG FAG+GG   +GGL  P +GG+G IGKYGGIGG  G+G  
Sbjct: 53  PPK--SVGDKKCIGGVAGVGGFAGVGGVAGVGGLGMPLIGGLGGIGKYGGIGGAAGIGGF 112

Query: 85  ---------GGFGGGVGGVGGIGGGL 96
                    GG GGGVGG+GG+GGG+
Sbjct: 113 HSIGGVGGLGGVGGGVGGLGGVGGGV 136

The following BLAST results are available for this feature:

BLAST of Cucsat.G3960 vs.


Match Name	E-value	Identity	Description

BLAST of Cucsat.G3960 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031736587.1	1.62e-56	100.00	glycine-rich protein 5-like isoform X3 [Cucumis sativus]	[more]
XP_031736588.1	2.43e-53	100.00	glycine-rich RNA-binding protein 3, mitochondrial-like isoform X4 [Cucumis sativ...	[more]
KAE8651790.1	4.12e-51	100.00	hypothetical protein Csa_006305 [Cucumis sativus]	[more]
XP_031736585.1	6.61e-51	100.00	elastin-like isoform X1 [Cucumis sativus]	[more]
XP_031736586.1	5.26e-50	100.00	ctenidin-3-like isoform X2 [Cucumis sativus]	[more]

BLAST of Cucsat.G3960 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D259	7.16e-46	85.26	Glycine-rich cell wall structural protein 1-like OS=Cucumis melo var. makuwa OX=...	[more]
A0A1S3CEA9	7.16e-46	85.26	glycine-rich cell wall structural protein 1-like OS=Cucumis melo OX=3656 GN=LOC1...	[more]
A0A6J1KIQ3	7.64e-34	82.35	glycine-rich protein 5-like OS=Cucurbita maxima OX=3661 GN=LOC111494807 PE=4 SV=...	[more]
A0A6J1HL05	7.64e-34	82.35	glycine-rich protein 5-like OS=Cucurbita moschata OX=3662 GN=LOC111464508 PE=4 S...	[more]
A0A6J1CDU6	2.41e-23	64.15	WW domain-containing protein C660.06 OS=Momordica charantia OX=3673 GN=LOC111009...	[more]

BLAST of Cucsat.G3960 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G04660.1	4.6e-06	53.49	glycine-rich protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34463:SF12	GLYCINE-RICH PROTEIN	coord: 38..153
None	No IPR available	PANTHER	PTHR34463	GLYCINE-RICH PROTEIN	coord: 38..153

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsat.G3960.T2	Cucsat.G3960.T2	mRNA
Cucsat.G3960.T1	Cucsat.G3960.T1	mRNA
Cucsat.G3960.T3	Cucsat.G3960.T3	mRNA