Cucsat.G3855 (gene) Cucumber (B10) v3

Overview


Name	Cucsat.G3855
Type	gene
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	glycine-rich RNA-binding protein-like
Location	ctg105: 3618263 .. 3619447 (+)
RNA-Seq Expression	Cucsat.G3855
Synteny	Cucsat.G3855

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTAAGCTAAGTGAAGGATAAGATTTAAAGGTGGATCCAAACAAGGTGCCAATCACACCGCCTTTTAAGTTAACCCTGATTTACAAAACAACCGCGTTTGTTCAATTTCCAGCAAACCCTAAAACTAACCCTAGTTACTTCTCCCCTTCTATATAAGAAACCCTAAACTTCTTCTCCATTTCATTCATTCTACACTTCCATTACGGTTCTTTTCCTTCTCGTTCCCATGGCTTCCTCCTCTGTTGAGTTCCGTTGCTTTGTGGGTGGCCTTGCTTGGGCCACTGATAGTAATTCCTTAGAGAAGGCGTTTTCCGTATATGGTGAAATCGTTGAAGCCAAGGTCCGTTTGACGTCGAGATCTGGATTTGTTCCGAATCGGCTTTCTCCATCCTTAATCTGATCTCTCAATCTGTGACTGTTTTGTGTTACTTTACTACTACTACTACTCTTGATATCTGTTACTTTTATTACTCTCCTTTAATCGGTACGTTTACCTTCATCCTGTTTACAGAGACGAAGAACGATCGGTTTCTTTTTTTTTTCTTGATTTTTAGTCGTGTCTGTGTTTATCGGTGTTGTTCTGTGACTGATCTTGTGTTTCCTTTTTTTTTCATCAGATCGTTAGCGATCGTGAGACCGGAAGGTCGAGAGGATTTGGATTCGTCACGTTTCTTGAGGAAGAGGCCATGAGAAGTGCCATTGAAGCGATGAATGGTCATATTCTCGACGGACGTAATATTACCGTTAACGAGGCGCAGCAAAGAGGTGGAGGAGGTGGTGGTGGATACAACCGTGGAGGTGGCGGTGGAGGTGGATACGGTGGACGTCGTGACGGCGGAGGATTTAGCCGTGGTGGTGGTGGAGGATACGGAGGTGGTGGTGGTGGTGGATACGGAGGAGGTGGTGGTGGTTACGGTGGAGGACGTGACCGTGGTTACGGTGGTGGAGGTGGTTACGGTGGTGGACGTGACTCCAGGGGAAGTGGTGGCGGTGGATCTGAAGGTGGATGGAGAAATTAGGCGGGGTTTTATGATTTCTTTTTAGCTTTTGGCTTCGAAATATTAGTGTGATGATGATAAGAAAAATCTTAGCAGGATCTTTTCTTTCGTTTTCATTTTGTGGCTTTGTTCCTGTTCTGTTTGGGTGCTCTCTTTTTTGACCGATTACCGATGGGTTTCGTGTTCCGATCAATGTTACCGATGATGAAAAAAATTACATAAGAAAATGAAGTACAGATCTTCGTTCTCGCACATCATTTCTTTCTTTTTTTCAATCTTCAAATATCCATTATTGAAATTTTCGCCATGGTCAAGATGTTCTTCTATAAAAAATTGAATATCAAAAGCAATTCAACTTTTTCTTCATAGCGGTAGTATTAAATATTTTCCTTGTTTTGGAGAAAAATGGATGGTTAGATGTTGTTTCGTTTTGATCCAATTGTGACAGCTTCAAAAATAAATATCTTGGTAGATATTTTCAATTGTTAGAGATAAATTTAATGGAATAATTTTGGCTTTATTGTGTGGGCCCACGATGGGTCGGCCATGTTGGGGAATCTGAATAATAATTTCTCGGAATATTCGTTTTCATATTAATGTATTTTGTCGTTTTGTTGTGAACGTGGGAATATTGTGGGCCTGTGCTTTGGTGACTTCTCACATGGGCCTGACTATTGGGCCGCGTTTTGAGTTGAAAAGTTGATTATCTTTATATCTTGTCAGATTTTATAATTATTTTGTTGCGTTATTTGTATGCTTTTAATATTAATAAATTATTGCCCTTCATAGTGAATTTATTTGTACAAGGAAGATGCTTACAATTATCAAAATTTCTTTGTGT

Coding sequence (CDS)

ATGGCTTCCTCCTCTGTTGAGTTCCGTTGCTTTGTGGGTGGCCTTGCTTGGGCCACTGATAGTAATTCCTTAGAGAAGGCGTTTTCCGTATATGGTGAAATCGTTGAAGCCAAGATCGTTAGCGATCGTGAGACCGGAAGGTCGAGAGGATTTGGATTCGTCACGTTTCTTGAGGAAGAGGCCATGAGAAGTGCCATTGAAGCGATGAATGGTCATATTCTCGACGGACGTAATATTACCGTTAACGAGGCGCAGCAAAGAGGTGGAGGAGGTGGTGGTGGATACAACCGTGGAGGTGGCGGTGGAGGTGGATACGGTGGACGTCGTGACGGCGGAGGATTTAGCCGTGGTGGTGGTGGAGGATACGGAGGTGGTGGTGGTGGTGGATACGGAGGAGGTGGTGGTGGTTACGGTGGAGGACGTGACCGTGGTTACGGTGGTGGAGGTGGTTACGGTGGTGGACGTGACTCCAGGGGAAGTGGTGGCGGTGGATCTGAAGGTGGATGGAGAAATTAG

Protein sequence

MASSSVEFRCFVGGLAWATDSNSLEKAFSVYGEIVEAKIVSDRETGRSRGFGFVTFLEEEAMRSAIEAMNGHILDGRNITVNEAQQRGGGGGGGYNRGGGGGGGYGGRRDGGGFSRGGGGGYGGGGGGGYGGGGGGYGGGRDRGYGGGGGYGGGRDSRGSGGGGSEGGWRN

Homology

[Close]

BLAST of Cucsat.G3855 vs. ExPASy Swiss-Prot
Match: Q99069 (Glycine-rich RNA-binding protein 1 (Fragment) OS=Sorghum bicolor OX=4558 GN=GRP1 PE=2 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 3.1e-10
Identity = 80/108 (74.07%), Postives = 81/108 (75.00%), Query Frame = 0


Query: 1   MRSAIEAMNGHILDGRNITVNEAQQ---RGGGGGGGYNRGGGGGGGYGGRRDGGGFSRGG 60
           MRSAIE MNG  LDGRNITVNEAQ    RGGGGGGGY  G GGGGGY GRRDGGG   GG
Sbjct: 41  MRSAIEGMNGKELDGRNITVNEAQSRGGRGGGGGGGYGGGRGGGGGY-GRRDGGGGGYGG 100

Query: 61  GGGYGGGGGGGYGGGRDRGY-GGGGGYGGGRDSRGSGG-GGSEGGWRN 104
           GGG  GGG GGYGGG   GY GGGGGYGGG  SRG GG G S+G WRN
Sbjct: 101 GGGGYGGGRGGYGGG---GYGGGGGGYGGG--SRGGGGYGNSDGNWRN 142

[Close]

BLAST of Cucsat.G3855 vs. ExPASy Swiss-Prot
Match: Q03878 (Glycine-rich RNA-binding protein OS=Daucus carota OX=4039 PE=2 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.5e-07
Identity = 70/109 (64.22%), Postives = 72/109 (66.06%), Query Frame = 0


Query: 1   MRSAIEAMNGHILDGRNITVNEAQQRGGGGGGGYNRGG----GGGGGYGGRRDGGGFSRG 60
           MR AIE MNG  LDGRNITVNEAQ RG GGGGG   GG    GGGGGYGGRR+G     G
Sbjct: 60  MRDAIEGMNGQELDGRNITVNEAQSRGSGGGGGRREGGGGGYGGGGGYGGRREG-----G 119

Query: 61  GGGGYGG---GGGGGYGGGRDRGYGGGGGYGGGRDSRGSGGGGSEGGWR 103
           GGGGYGG   GGGGGYG       GGGGGYGG R+    G GG  GG R
Sbjct: 120 GGGGYGGRREGGGGGYG-------GGGGGYGGRREGGDGGYGGGGGGSR 156

[Close]

BLAST of Cucsat.G3855 vs. ExPASy Swiss-Prot
Match: P10979 (Glycine-rich RNA-binding, abscisic acid-inducible protein OS=Zea mays OX=4577 GN=RAB15 PE=1 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 2.5e-07
Identity = 68/103 (66.02%), Postives = 72/103 (69.90%), Query Frame = 0


Query: 1   MRSAIEAMNGHILDGRNITVNEAQQRGGGGGGGYNRGGGGGGGYGGRRDGGGFSRGGGGG 60
           M  AIE MNG  LDGRNITVN+AQ RGGGGGGG   GG GGGGYGG R  GG+  GGGGG
Sbjct: 62  MLDAIENMNGKELDGRNITVNQAQSRGGGGGGGGYGGGRGGGGYGGGRRDGGY--GGGGG 121

Query: 61  YGGGGGGGYGGGRDRGYGGGGGYGGGRDSRGSGGGGSEGGWRN 104
           YGG   GG G     GYGGGGGYGG R+  G G GG  GGWR+
Sbjct: 122 YGGRREGGGG-----GYGGGGGYGGRREGGGGGYGGGGGGWRD 157

[Close]

BLAST of Cucsat.G3855 vs. ExPASy Swiss-Prot
Match: Q03250 (Glycine-rich RNA-binding protein 7 OS=Arabidopsis thaliana OX=3702 GN=RBG7 PE=1 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.2e-06
Identity = 72/119 (60.50%), Postives = 76/119 (63.87%), Query Frame = 0


Query: 1   MRSAIEAMNGHILDGRNITVNEAQQRG--------GGGGGGYNRGGGGG--------GGY 60
           M+ AIE MNG  LDGR+ITVNEAQ RG        GGGGGGY  GGGGG        GG 
Sbjct: 62  MKDAIEGMNGQDLDGRSITVNEAQSRGSGGGGGHRGGGGGGYRSGGGGGYSGGGGSYGGG 121

Query: 61  GGRRDGGGFSRGGGGGYG--GGGGGGYGGGRDRGYGGGGGYGGGRDSRGSGGGGSEGGW 102
           GGRR+GGG   GGGGGY   GGGGG YGGGR     GGGGYGGG +  G GG G  GGW
Sbjct: 122 GGRREGGGGYSGGGGGYSSRGGGGGSYGGGRRE---GGGGYGGG-EGGGYGGSGGGGGW 176

[Close]

BLAST of Cucsat.G3855 vs. ExPASy Swiss-Prot
Match: P49310 (Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba OX=3728 PE=2 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 2.1e-06
Identity = 65/102 (63.73%), Postives = 68/102 (66.67%), Query Frame = 0


Query: 1   MRSAIEAMNGHILDGRNITVNEAQQRGGGGGGGYNRGGGGGGGYGGRRDGGGFSRGGGGG 60
           M+ AIE MNG  LDGR+ITVNEAQ RG GGGGG   G GGGGGY           GGGGG
Sbjct: 62  MKDAIEGMNGQDLDGRSITVNEAQSRGSGGGGG---GRGGGGGY---------RSGGGGG 121

Query: 61  YGGGGGGGYGGGRDRGYGGGGGYGGGRDSRGSGGGGSEGGWR 103
           YGGGGGG  GGGR+ GY GG   GGG  SRG GGGG  GG R
Sbjct: 122 YGGGGGGYGGGGREGGYSGG---GGGYSSRGGGGGGYGGGGR 148

[Close]

BLAST of Cucsat.G3855 vs. NCBI nr
Match: KGN61837.2 (hypothetical protein Csa_006347 [Cucumis sativus])

HSP 1 Score: 147 bits (371), Expect = 9.09e-43
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 1   MRSAIEAMNGHILDGRNITVNEAQQRGGGGGGGYNRGGGGGGGYGGRRDGGGFSRGGGGG 60
           MRSAIEAMNGHILDGRNITVNEAQQRGGGGGGGYNRGGGGGGGYGGRRDGGGFSRGGGGG
Sbjct: 62  MRSAIEAMNGHILDGRNITVNEAQQRGGGGGGGYNRGGGGGGGYGGRRDGGGFSRGGGGG 121

Query: 61  YGGGGGGGYGGGRDRGYGGGGGYGGGRDSRGSGGGGSEGGWRN 103
           YGGGGGGGYGGGRDRGYGGGGGYGGGRDSRGSGGGGSEGGWRN
Sbjct: 122 YGGGGGGGYGGGRDRGYGGGGGYGGGRDSRGSGGGGSEGGWRN 164

[Close]

BLAST of Cucsat.G3855 vs. NCBI nr
Match: XP_004148845.3 (glycine-rich RNA-binding protein 1 [Cucumis sativus])

HSP 1 Score: 140 bits (353), Expect = 6.07e-40
Identity = 103/110 (93.64%), Postives = 103/110 (93.64%), Query Frame = 0


Query: 1   MRSAIEAMNGHILDGRNITVNEAQQRGGGGGGGYNRGGGGGGGYGGRRDGGGFSRGGGGG 60
           MRSAIEAMNGHILDGRNITVNEAQQRGGGGGGGYNRGGGGGGGYGGRRDGGGFSRGGGGG
Sbjct: 62  MRSAIEAMNGHILDGRNITVNEAQQRGGGGGGGYNRGGGGGGGYGGRRDGGGFSRGGGGG 121

Query: 61  YGGGGGGGYGGG-------RDRGYGGGGGYGGGRDSRGSGGGGSEGGWRN 103
           YGGGGGGGYGGG       RDRGYGGGGGYGGGRDSRGSGGGGSEGGWRN
Sbjct: 122 YGGGGGGGYGGGGGGYGGGRDRGYGGGGGYGGGRDSRGSGGGGSEGGWRN 171

[Close]

BLAST of Cucsat.G3855 vs. NCBI nr
Match: QGZ19397.1 (small RNA binding protein 1 [Cucumis sativus])

HSP 1 Score: 139 bits (349), Expect = 1.77e-39
Identity = 99/103 (96.12%), Postives = 99/103 (96.12%), Query Frame = 0


Query: 1   MRSAIEAMNGHILDGRNITVNEAQQRGGGGGGGYNRGGGGGGGYGGRRDGGGFSRGGGGG 60
           MRSAIEAMNGHILDGRNITVNEAQQRGGGGGGGYNRGGG    YGGRRDGGGFSRGGGGG
Sbjct: 62  MRSAIEAMNGHILDGRNITVNEAQQRGGGGGGGYNRGGG----YGGRRDGGGFSRGGGGG 121

Query: 61  YGGGGGGGYGGGRDRGYGGGGGYGGGRDSRGSGGGGSEGGWRN 103
           YGGGGGGGYGGGRDRGYGGGGGYGGGRDSRGSGGGGSEGGWRN
Sbjct: 122 YGGGGGGGYGGGRDRGYGGGGGYGGGRDSRGSGGGGSEGGWRN 160

[Close]

BLAST of Cucsat.G3855 vs. NCBI nr
Match: XP_008460935.1 (PREDICTED: glycine-rich RNA-binding protein 1-like [Cucumis melo])

HSP 1 Score: 116 bits (290), Expect = 2.15e-30
Identity = 96/111 (86.49%), Postives = 97/111 (87.39%), Query Frame = 0


Query: 1   MRSAIEAMNGHILDGRNITVNEAQQRGGGGGGGYNRGGGGGGGYGGRRDGGG---FSRGG 60
           MRSAIEAMNGHILDGRNITVNEAQQRGGGGGGG    GGGGGGYGGRRDGGG   FSRGG
Sbjct: 62  MRSAIEAMNGHILDGRNITVNEAQQRGGGGGGGGGYRGGGGGGYGGRRDGGGGGGFSRGG 121

Query: 61  GGGYGGGGGG-----GYGGGRDRGYGGGGGYGGGRDSRGSGGGGSEGGWRN 103
           GG YGGGGGG     GYGGGRDRGYGGGGGYGGGRD+RG GGGGSEGGWRN
Sbjct: 122 GG-YGGGGGGYGGGGGYGGGRDRGYGGGGGYGGGRDNRGGGGGGSEGGWRN 171

[Close]

BLAST of Cucsat.G3855 vs. NCBI nr
Match: XP_038901242.1 (glycine-rich RNA-binding protein-like [Benincasa hispida])

HSP 1 Score: 100 bits (248), Expect = 4.52e-24
Identity = 89/111 (80.18%), Postives = 93/111 (83.78%), Query Frame = 0


Query: 1   MRSAIEAMNGHILDGRNITVNEAQQRGGGGGGG-YNRGGGGGGGYGGRRDGGG---FSRG 60
           MRSAIEAMNG  LDGR+ITVNEAQQRGGGGGGG YNRGGGGGGGYGGRR+GGG   ++RG
Sbjct: 62  MRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGGYNRGGGGGGGYGGRREGGGGGGYNRG 121

Query: 61  ----GGGGYGGGGGGGYGGGRDRGYGGGGGYGGGRDSRGSGGGGSEGGWRN 103
               GGGGYGGGG   YGGGRDR YGGGGG GG R SRG GGGGSEGGWRN
Sbjct: 122 SGGYGGGGYGGGG---YGGGRDRSYGGGGGDGGSRYSRGGGGGGSEGGWRN 169

[Close]

BLAST of Cucsat.G3855 vs. ExPASy TrEMBL
Match: A0A0A0LLY1 (Small RNA binding protein 1 OS=Cucumis sativus OX=3659 GN=Csa_2G247040 PE=2 SV=1)

HSP 1 Score: 139 bits (349), Expect = 8.58e-40
Identity = 99/103 (96.12%), Postives = 99/103 (96.12%), Query Frame = 0


Query: 1   MRSAIEAMNGHILDGRNITVNEAQQRGGGGGGGYNRGGGGGGGYGGRRDGGGFSRGGGGG 60
           MRSAIEAMNGHILDGRNITVNEAQQRGGGGGGGYNRGGG    YGGRRDGGGFSRGGGGG
Sbjct: 62  MRSAIEAMNGHILDGRNITVNEAQQRGGGGGGGYNRGGG----YGGRRDGGGFSRGGGGG 121

Query: 61  YGGGGGGGYGGGRDRGYGGGGGYGGGRDSRGSGGGGSEGGWRN 103
           YGGGGGGGYGGGRDRGYGGGGGYGGGRDSRGSGGGGSEGGWRN
Sbjct: 122 YGGGGGGGYGGGRDRGYGGGGGYGGGRDSRGSGGGGSEGGWRN 160

[Close]

BLAST of Cucsat.G3855 vs. ExPASy TrEMBL
Match: A0A1S3CE16 (glycine-rich RNA-binding protein 1-like OS=Cucumis melo OX=3656 GN=LOC103499671 PE=4 SV=1)

HSP 1 Score: 116 bits (290), Expect = 1.04e-30
Identity = 96/111 (86.49%), Postives = 97/111 (87.39%), Query Frame = 0


Query: 1   MRSAIEAMNGHILDGRNITVNEAQQRGGGGGGGYNRGGGGGGGYGGRRDGGG---FSRGG 60
           MRSAIEAMNGHILDGRNITVNEAQQRGGGGGGG    GGGGGGYGGRRDGGG   FSRGG
Sbjct: 62  MRSAIEAMNGHILDGRNITVNEAQQRGGGGGGGGGYRGGGGGGYGGRRDGGGGGGFSRGG 121

Query: 61  GGGYGGGGGG-----GYGGGRDRGYGGGGGYGGGRDSRGSGGGGSEGGWRN 103
           GG YGGGGGG     GYGGGRDRGYGGGGGYGGGRD+RG GGGGSEGGWRN
Sbjct: 122 GG-YGGGGGGYGGGGGYGGGRDRGYGGGGGYGGGRDNRGGGGGGSEGGWRN 171

[Close]

BLAST of Cucsat.G3855 vs. ExPASy TrEMBL
Match: A0A6J1G631 (glycine-rich RNA-binding protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111451139 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.85e-23
Identity = 91/111 (81.98%), Postives = 95/111 (85.59%), Query Frame = 0


Query: 1   MRSAIEAMNGHILDGRNITVNEAQQRGGGGGGG-YNRGGGGGGGYGGRRDGGG--FSRGG 60
           MRSAIEAMNG  LDGR+ITVNEAQQRGGGGGGG YNRGGGGGGGYGGRR+GGG  ++RGG
Sbjct: 62  MRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGGYNRGGGGGGGYGGRREGGGGGYNRGG 121

Query: 61  GGGYGGGGGG----GYGGGRDRGYGGGGGYGGGRDSRGSGGGG-SEGGWRN 103
           GG YGGGGGG    GYGGGRDRGYGGGGG  GGR  RG GGGG SEGGWRN
Sbjct: 122 GG-YGGGGGGYGGGGYGGGRDRGYGGGGGGDGGRYQRGGGGGGGSEGGWRN 171

[Close]

BLAST of Cucsat.G3855 vs. ExPASy TrEMBL
Match: A0A6J1L652 (glycine-rich RNA-binding protein 1-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111499534 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 5.64e-23
Identity = 91/114 (79.82%), Postives = 95/114 (83.33%), Query Frame = 0


Query: 1   MRSAIEAMNGHILDGRNITVNEAQQRGGGGGGG--YNRGGGGGGGYGGRRDGGG---FSR 60
           MRSAIEAMNG  LDGR+ITVNEAQQRGGGGGGG  YNRGGGGGGGYGGRR+GGG   ++R
Sbjct: 62  MRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGGGYNRGGGGGGGYGGRREGGGGGGYNR 121

Query: 61  GGGGGYGGGGGG-----GYGGGRDRGYGGGGGYGGGRDSRGSGGGG-SEGGWRN 103
           GGGG YGGGGGG     GYGGGRDRGYGGGGG  GGR  RG GGGG SEGGWRN
Sbjct: 122 GGGG-YGGGGGGYGGGGGYGGGRDRGYGGGGGGDGGRYQRGGGGGGGSEGGWRN 174

[Close]

BLAST of Cucsat.G3855 vs. ExPASy TrEMBL
Match: A0A6J1FRL7 (glycine-rich RNA-binding protein-like OS=Cucurbita moschata OX=3662 GN=LOC111448177 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 2.49e-21
Identity = 90/114 (78.95%), Postives = 95/114 (83.33%), Query Frame = 0


Query: 1   MRSAIEAMNGHILDGRNITVNEAQQRGGGGGGGYNRGGGGGGG-YGGRRDGGG---FSRG 60
           MRSAIEAMNG  LDGR+ITVNEAQQRGGGGGGGYNRGGGGGGG YGGRR+GGG   ++RG
Sbjct: 62  MRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGYNRGGGGGGGGYGGRREGGGGGGYNRG 121

Query: 61  GGGGYGGGGGG----GYGGGRDRGYGGGGGYGGGRDSRGSGGGG---SEGGWRN 103
           GGG YGGGGGG    GYGGGRDRGYGGGG  GG R +RG GGGG   SEGGWRN
Sbjct: 122 GGG-YGGGGGGYGGGGYGGGRDRGYGGGG-DGGSRYNRGGGGGGGGGSEGGWRN 173

[Close]

BLAST of Cucsat.G3855 vs. TAIR 10
Match: AT2G21660.2 (cold, circadian rhythm, and rna binding 2 )

HSP 1 Score: 56.6 bits (135), Expect = 1.4e-08
Identity = 69/103 (66.99%), Postives = 74/103 (71.84%), Query Frame = 0


Query: 1   MRSAIEAMNGHILDGRNITVNEAQQRGGGGGGGYNRGGGGGGGYGGRRDGGGFSRGGGGG 60
           M+ AIE MNG  LDGR+ITVNEAQ RG GGGGG+ RGGG  GG GGRR+GGG   GGGGG
Sbjct: 62  MKDAIEGMNGQDLDGRSITVNEAQSRGSGGGGGH-RGGGSYGGGGGRREGGGGYSGGGGG 121

Query: 61  YG--GGGGGGYGGGRDRGYGGGGGYGGGRDSRGSGGGGSEGGW 102
           Y   GGGGG YGGGR     GGGGYGGG +  G GG G  GGW
Sbjct: 122 YSSRGGGGGSYGGGRRE---GGGGYGGG-EGGGYGGSGGGGGW 159

[Close]

BLAST of Cucsat.G3855 vs. TAIR 10
Match: AT2G21660.1 (cold, circadian rhythm, and rna binding 2 )

HSP 1 Score: 53.9 bits (128), Expect = 8.8e-08
Identity = 72/119 (60.50%), Postives = 76/119 (63.87%), Query Frame = 0


Query: 1   MRSAIEAMNGHILDGRNITVNEAQQRG--------GGGGGGYNRGGGGG--------GGY 60
           M+ AIE MNG  LDGR+ITVNEAQ RG        GGGGGGY  GGGGG        GG 
Sbjct: 62  MKDAIEGMNGQDLDGRSITVNEAQSRGSGGGGGHRGGGGGGYRSGGGGGYSGGGGSYGGG 121

Query: 61  GGRRDGGGFSRGGGGGYG--GGGGGGYGGGRDRGYGGGGGYGGGRDSRGSGGGGSEGGW 102
           GGRR+GGG   GGGGGY   GGGGG YGGGR     GGGGYGGG +  G GG G  GGW
Sbjct: 122 GGRREGGGGYSGGGGGYSSRGGGGGSYGGGRRE---GGGGYGGG-EGGGYGGSGGGGGW 176

[Close]

BLAST of Cucsat.G3855 vs. TAIR 10
Match: AT4G39260.1 (cold, circadian rhythm, and RNA binding 1 )

HSP 1 Score: 45.1 bits (105), Expect = 4.1e-05
Identity = 73/116 (62.93%), Postives = 74/116 (63.79%), Query Frame = 0


Query: 1   MRSAIEAMNGHILDGRNITVNEAQQRGGGGGGGYNRGGGGGGGYGGRRDGGGFSRGGGGG 60
           MR AIE MNG  LDGR ITVNEAQ RG GGGGG  RGG GGG   G   GGG+S GGGGG
Sbjct: 60  MRDAIEEMNGKELDGRVITVNEAQSRGSGGGGG-GRGGSGGGYRSG--GGGGYSGGGGGG 119

Query: 61  YGGGGGGGY----------GGGRDRGYGG-----GGGYGGGRDSRGSGGGGSEGGW 102
           Y GGGGGGY          GGG  RGYGG     GGGYGGG D    GGGG  GGW
Sbjct: 120 YSGGGGGGYERRSGGYGSGGGGGGRGYGGGGRREGGGYGGG-DGGSYGGGG--GGW 169

[Close]

BLAST of Cucsat.G3855 vs. TAIR 10
Match: AT4G39260.2 (cold, circadian rhythm, and RNA binding 1 )

HSP 1 Score: 44.3 bits (103), Expect = 7.0e-05
Identity = 52/83 (62.65%), Postives = 54/83 (65.06%), Query Frame = 0


Query: 1   MRSAIEAMNGHILDGRNITVNEAQQRGGGGGGGYNRGGGGGGGYGGRRDGGGFSRGGGGG 60
           MR AIE MNG  LDGR ITVNEAQ RG GGGGG  RGG           GGG+  GGGGG
Sbjct: 60  MRDAIEEMNGKELDGRVITVNEAQSRGSGGGGG-GRGG----------SGGGYRSGGGGG 119

Query: 61  YGGGGGGGYGGGRDRGYGGGGGY 84
           Y GGGGGGY GG     GGGGG+
Sbjct: 120 YSGGGGGGYSGG-----GGGGGW 126

The following BLAST results are available for this feature:

BLAST of Cucsat.G3855 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q99069	3.1e-10	74.07	Glycine-rich RNA-binding protein 1 (Fragment) OS=Sorghum bicolor OX=4558 GN=GRP1...	[more]
Q03878	1.5e-07	64.22	Glycine-rich RNA-binding protein OS=Daucus carota OX=4039 PE=2 SV=1	[more]
P10979	2.5e-07	66.02	Glycine-rich RNA-binding, abscisic acid-inducible protein OS=Zea mays OX=4577 GN...	[more]
Q03250	1.2e-06	60.50	Glycine-rich RNA-binding protein 7 OS=Arabidopsis thaliana OX=3702 GN=RBG7 PE=1 ...	[more]
P49310	2.1e-06	63.73	Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba OX=3728 PE=2 SV=1	[more]

BLAST of Cucsat.G3855 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN61837.2	9.09e-43	100.00	hypothetical protein Csa_006347 [Cucumis sativus]	[more]
XP_004148845.3	6.07e-40	93.64	glycine-rich RNA-binding protein 1 [Cucumis sativus]	[more]
QGZ19397.1	1.77e-39	96.12	small RNA binding protein 1 [Cucumis sativus]	[more]
XP_008460935.1	2.15e-30	86.49	PREDICTED: glycine-rich RNA-binding protein 1-like [Cucumis melo]	[more]
XP_038901242.1	4.52e-24	80.18	glycine-rich RNA-binding protein-like [Benincasa hispida]	[more]

BLAST of Cucsat.G3855 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LLY1	8.58e-40	96.12	Small RNA binding protein 1 OS=Cucumis sativus OX=3659 GN=Csa_2G247040 PE=2 SV=1	[more]
A0A1S3CE16	1.04e-30	86.49	glycine-rich RNA-binding protein 1-like OS=Cucumis melo OX=3656 GN=LOC103499671 ...	[more]
A0A6J1G631	1.85e-23	81.98	glycine-rich RNA-binding protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]
A0A6J1L652	5.64e-23	79.82	glycine-rich RNA-binding protein 1-like isoform X1 OS=Cucurbita maxima OX=3661 G...	[more]
A0A6J1FRL7	2.49e-21	78.95	glycine-rich RNA-binding protein-like OS=Cucurbita moschata OX=3662 GN=LOC111448...	[more]

BLAST of Cucsat.G3855 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G21660.2	1.4e-08	66.99	cold, circadian rhythm, and rna binding 2	[more]
AT2G21660.1	8.8e-08	60.50	cold, circadian rhythm, and rna binding 2	[more]
AT4G39260.1	4.1e-05	62.93	cold, circadian rhythm, and RNA binding 1	[more]
AT4G39260.2	7.0e-05	62.65	cold, circadian rhythm, and RNA binding 1	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 9..82 e-value: 1.3E-27 score: 107.7
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 11..79 e-value: 2.9E-21 score: 75.1
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 8..86 score: 19.058443
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 2..106 e-value: 1.9E-30 score: 107.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 83..164
None	No IPR available	PANTHER	PTHR48024:SF22	RNA-BINDING PROTEIN GRP1A, PUTATIVE, EXPRESSED-RELATED	coord: 1..163
None	No IPR available	PANTHER	PTHR48024	GEO13361P1-RELATED	coord: 1..163
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 9..138

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsat.G3855.T1	Cucsat.G3855.T1	mRNA
Cucsat.G3855.T2	Cucsat.G3855.T2	mRNA
Cucsat.G3855.T3	Cucsat.G3855.T3	mRNA
Cucsat.G3855.T4	Cucsat.G3855.T4	mRNA
Cucsat.G3855.T5	Cucsat.G3855.T5	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006888	endoplasmic reticulum to Golgi vesicle-mediated transport
biological_process	GO:0006858	extracellular transport
biological_process	GO:0006886	intracellular protein transport
biological_process	GO:0006891	intra-Golgi vesicle-mediated transport
biological_process	GO:1990428	miRNA transport
biological_process	GO:0050688	regulation of defense response to virus
biological_process	GO:0006890	retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005615	extracellular space
cellular_component	GO:0000139	Golgi membrane
cellular_component	GO:0030126	COPI vesicle coat
molecular_function	GO:0035198	miRNA binding
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003727	single-stranded RNA binding
molecular_function	GO:0035197	siRNA binding
molecular_function	GO:0005198	structural molecule activity
molecular_function	GO:0003676	nucleic acid binding