Cucsat.G3725 (gene) Cucumber (B10) v3

Overview
NameCucsat.G3725
Typegene
OrganismCucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
DescriptionNuclear pore complex protein NUP35
Locationctg1047: 1562753 .. 1569789 (+)
RNA-Seq ExpressionCucsat.G3725
SyntenyCucsat.G3725
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAAAACTTAAAACATGAATATTGAAATTAAAGCAATTTAATTTCGAGTGTGAGGTTCAAATAATATCACGAATCACGCTGTCAAACCGTATTCCCCACCGGAGGGAGTTGGGGTTTAGGGTTTCAAACTTTCAATTTTCAACCTTCTAAACCTTTTTAGGTCTTTTGTCGTCCACTTTGGGCGTCTCTGTTCCAAAATACTTTGGAGAGGGAAAAATCAAATTCCCAAGTCCCCTCGCCTCTCTAATTCTCTAATCCAATCGATCAGTTCGAAGCAGAGTTCGACCATTTTCTCAAGGTGATTCTCCTAATCTCTCCTCCATTTTCTCATTGCCTTTTCCAAGTTTTCTGCATTTCGTATACTTGAACTCCACTTTTGTGTTATTTGAACAATTGAATTAATATTTCCCAGCGGCTATGGACTTTTCGACCCAGTTGAACTATATAGTGTTTTAGCTGATCTATTGTTTCTTGATTTATTATAAAGTTCTAGATTGCTTCCTCAGAATTCGTATTTATTGGGTTTGTTCTGGAACCTTGATTCTCCCAACCCCCCCTGCATCTGCTAGTTCTTTAATCGAGCTCACACAGACTGTTTGGCGGTTTAATTATTAGAACTTAAACGTTCGTTTTTTCAAATTTGTTTTGTCGAAGGGAAATTTCATTTTCTGTTCCTATGCAGTTGAGATATATCTTTCTTTGAAATCATGAATACCACTGTGCATAGAACTCCCAATTCTGGGAGCCGGTCATTGTTCTACCAAGATTTAGCATCACCTGTTACGACGCGGAAAGGAAAATTTTCAACTCCAGGCCAGGCAGCTGCTGTTTCTGCTTTATGGCGGGAGAATTTTGGAAACTCAGATCTTCCTCCTCCTCCAGTTTTCACTTTGGAAGACCGCTCGGTTTCAGATTTTTCTCCCGAGTCTGGGATTCCTGATTATCCTGTTTCCCCAGAAACTAAATCAGACCCCAGGACCCCTATCCGAAGGCATGACTTCTCTTCGCCGACAAAAAACAAGTCAAATGCCAGCACTTCTTATACACCAATCAGTGGACAACAAAGCCGTCAGGGATCGGCTGGCTTTAGTTGGTGGTCAACATCGAAAGGTGGTGGGAGCGAGCAAGAAGATAAGGGAAAAAGTTCACCAGTCGAAGGTGTTATTCAACCTGGTGCATTAATCACACTTCCAACCCCGAGGGAAGTTGCCAGACCGGAGGTGCAAAGGAATTGCTTGCCTTTAGCAAAACTCAATGAAGAGGAATGGGTTACTGTCTATGGGTGAGTTGTCTATTTCCTTTCTTCCTTCTCACATCATCGTTAGCTGTGGTTTTTATCTTTGAATTTGAATGATTCATTTACCATCTTTGAGTTTTGCCTTATTGATTACATTTTTTTAATCTACATATTAAACAGCTAACCAATTTTCTTTTGAGTCATCTTAAAGTTCCCTAATCACGTTGTGGACGATCAAAGTGGTTTTCGTATGTATGATATGGTTTATGCAGCCTTGCCTTGACATTTCTCTCAGATGAATCTTTCTCTTACATGCACCCACATTTCATTCCTGCACGCAAAAACATGTTCGCATATTGAATGTTGCTTCAAAATCAATTTGATATTAAACATCTTCAATTTGGAAGCGTTTTAAGCCTGTTCTTATAGCTTGCTTTCCTTCTTGTCGAAATGAATGAGCATGCTTCATTTGTTTGACTTGGAAGGAAGTACCCTAGCTGCTTAGGTTTACCTCAGTGGCAATGCTGTGGTAATTTATTGCAGGCTGCATTTATATTAGTTTTGATACGGGATTACTTGAACAAGATTTATTCTATAGATTAACAACGGTGCCCTTGAGTTCTAAAGTGAGGTTGGTTTTGATAGAAGCAATTTAAATTGTTAGTGTTGAGTATTTGATAAGAAGCGATTCTGTTACTGATTTCAAATGTTATTTATTAATTATATTATTTGTTGTTCTCTTTCTTCAGATTTTCCCCTGCTGATACAAATCTAGTTTTGAGGGAGTTTGAAAAATGCGGTGAGATCTTAAAACACCTTCCTGGTCCAAGAGACGCTAATTGGATGCACATTCTTTATCAGGTACCAATGCATCTCTGTTTCCTAGCTTTATTTGACTGGTTTTCTTGGTTTTATGTTCTTTTTGTTTTAGATTCTTCCAGTCAATCTGTTATTGTAAATCGGAATGGCTTTGTTGCTAGTTGTTAAATTTTGAAATCTTGTTAATTATGTATCAATTATTGTGAAAATAACAGCACAACATGTATTCATGGATGCTAGGAAAGGCATTAGGTTTGAAGTTCGTCATTGTTGTTTTTAGTTCAACGATATGGGGGTGGTGATTCAAACATCTACCGTTTGGTTAGGGTTTAATTGATACCTATTGCGTGTTTTGTTTGAATATTAACCTCATCAATCAAATTAATGCTTCATAATCAAGTCAAGACTTGACACTTTGACCAGTCGAAAGATACATATTACGTTGGGTATATGTAACTCATATAATATTCGTTTATGAGCAGGAAGACGCTATATTTCAACCTCTTAGAAATACTATTTACGTTATGAACATGTTTAATTTTGTTTCTGGTGCAGAACCGATCTGATGCTCAAAAGGCTCTCAATAAAAATGGTATTCAAATTAATGGGGTGCTAATTGTTGGTGTGAAACCAGTGGACCCAATGCATCGGCAGGCACTAGATGAAAGATTAAACAATCCAGGATTCATGGTTATCCCACCGGTATCATCTCGAACCTCAGAACTCCTTGCAACGAGAGGACCCATGCGTCCCTACAATCTTCAAAATGGTTACACTAGTGCACGGCACTCAGGAGGTGCCATAGCTTCACCATCGAAATCATTAGTATCTAAGGTCATGGATTTGATGTTTGGAGTCTAAGCTCCTCCTCTGTGGCAAGAAATTCCTTGAAATTTGAGAGCTTACACATTGATTTGACGTGATGTTATGGACTCTTATAACTGTGTGCAATGTTCACACTTCACCGTCCATCTTGATCTTTTGATTGTTTTTCCTGATTCTTACTCAAAATGAGACAGAAGGACATGAACATGATGCTAGAACATTTTTTGTTCCCTTGAAAACCAAACAAATATGAGAACCAGGTATATAAGTATATTTCCACTTCCCACCCTTTGAACTCTCCTCTTGCTGAACTTTTACAATAGGTTGAAATAACTCATTTCAAGCATGTGGGGTAACTTTGAGTTATTATAAATTATTAATGCATGCTACAACTCAACATTGTTACATGAGCAAATTTATTTGAGAAAATACATATAATATTATAAAGAAAATTACTTGGATGTATACTATTATTTATGTGTAACTCATTCAAAAATCAAATTATCAATTGTCAAGTGACAAGTTTGAGATGATAGAAATATTGGAGTATTGGAGTATTGGAGATCATAGAAATATTGGAGTATTCAAGGAAACATGATTTCTAAATATATAAAAAGGAATTGCAGAAAGAAATAGATGAAGGAGAAGAAGATCAAAAAGTGTTATAGTGAAGTAGAGAGAATCAAGTGCTCAAATAGAGAAGATAGAGGAATCGAGTAGAGAGAGTATTGAGTCGGTTGTTTATTATCATTTTAGTAAATTTACTTGAAAACGATGTAAGCATATTGCTAAAAGACTTGAGTTTTCTTAAGAACTATGTAAGCATATTGCTAAAAGACTTGAGTTTTCAAAAGGTAAGCTCATTTAGACTCTCAAAATTGACCGTCTGTTCCAAGAAAAACCTTTTTGCAATCGGTCTTTACTCTTTTCTTGCTTCTCAGTTGAATTATTTGTTTATTTCATAATATTTCTCTGTATTCTTCTTTCTTTTTCAAACCGACCGCCTGCGCTCTACTTCACCCAAAACCGATGAGAAACGTTGGCCGACCGACTACACTTACTTATTTATTTTTAATGCCTATTTATAAACTTTCTCCGCGAAAACACTCAGTCCCTCACGCTGGTCGTTAACTAAGACATAATCCTCTCTCCCTCACGCACTCAGAGACTCAGAAAGAATCTCACCGGAAAGATACGCCTGAAATTTTCTGAATGACTGGTGAACGAAAAATGCCGCCGGCGCCAGAGGCAGAAGTGCAGCTACCAGAGACGACTAAGGTGGCGGCTATCTCGTCCGAGAGCGGCAGGATCGGTAGACCGATGGAACCACCGGACCGAAGCTTCGACCGCCTGAGAGCCGATTTGTGTCAGTTCGCACTGAGGCTGGTTTGCATTGCCACGTCCACGACGACAGTGGCGTTGATGGTTACCGCCAAGGATTCTACCACTGTTACCATTTACGGATTTGAATTTCCCGTTCAATCGAAGTGGTCGTTCTCAGACGCATTCGAGTAAGTTACCGTTTGTAGTGTTTCTAGTTTAAGCCCTGGATGTTTTGGTGACTGAGTCAGTGGTTGTCTTGTAAAAAGAAAAACAGTTCAGGGGAGGAGCTGTGAGATCCATTAGTTCAATGGGTATGGTCTTTGGAGGAATGGTGCTCCCCTGTAACTATAATCACCGTTAAACTTTTAATTTCTTGTTCGTTCTGTTCTTCTTCAACTTTGAAATACCTTTTGGAAATCACAACGGATCCCAATAGGCAGAATTGGAAGACGAAATGATGAGGCTCGTGTTTTCTGTCGGCTTAAGGAGGAAACATCTTAGTGCTATGTTTTTTCATTTCTTAACTTGCTCTCTTGGCCCCCAAACAGAGTATTATTTAGTCCTGATTGTTTCCGATTGTTTTTTTTCAAAGAAAAACCATCACTCGTTAGCCTGCTTTAGAAAAATGCACTTTCTAGCTTACAGTTGATTTAGTCGCTTTTCTTCCGTTGAAATGTTGACAAATCTGCGCTCCTTCGAATATGAACAATGGAATCTGAAAAACCCTCTTCATCCACGTTTCATGGCTTGGTCTGAAATGAACCCGTGAAACCACCCGATTCCTGCTTTCCCCAAAATATTCCCCATTTCACGTTTGTCTTCTTCTGGGTCTGTTGTGACCCTCCATACAAAAGTTTGACCAACTAACTGACTATTGCTTAATGGGTTTGTCTTTCTTTATTATTCTTAGTGCATCCAATCGCGCCACGGTCACCGTAATGGGTTCTTTTTATAAAAGAAAAATTATTAAAGGGTAATAATAAGAATAAAAGAGTTTGTTCCATTTGTTTGTAGTTCATTATTATTAAAATGAACTTGCGCGTTGGGATTCTGGGGGTGTTTTTCAACGAGTTGAAAATGAAAGTAGTTGATTCCCCGTGAGTTTATGATGAGTGTAGGTACCTTGTTGGAGTTTCAGGGGCTGTCGCTGCCTACTCTTTGCTGCAGCTGCTTGTCACTGTTTCTATGCTCGCTAGGAGGTCCCCAGTGCTTAGCTCCAGAAGTCAAGCCTGGCTCATTTTCGCTGTTGATCTGGTAATTATTCTGTTCACTAGCTCATGGAAATGGTAGCATGTCGACTAAAAGAATTTCAGGGAGAAATATTTTGTTTTTTTTTGCCCTGTTTTTTTAATTAATTTATTTAATTTAAGGATAGATGTTGGTTGAAGTATCAATAGGATTAATACCTTAACTCATATGCCTAAGCTTTTGAATTTAGTGGTAAGTTAATATTGTATCAATATAAGTTCTGTGTTCTAACTTCCACTTTCTTCTCAATTTATACTGCACACATCAGCTTAATCAAGTTCTATAGTTCCCACCAATTTTAAGTACTAGCCATCTTTCCGGTTAATTAACAGTGAGAGAACTTTAGATAATTAATACGTTTGAGTTGATAGTTGTTTACTTGTTATTTTAGATAAATAGTTATTGAAAATGATGAGGTGCATATTCGACTGTATTTGTAGCTCACCCAAGTGTGCCAACTACTACTTGATAAACTTTTCTTTTCTATTGTTTTCAATAGTCTTTTTCTTTTTGCAATTGATGAGGATTCCAGCACTAAGTATTGCTCATTCGTTATTTATTATATTTTCTTGCTAGGCTATAAATTGTCACTTTGAAAATATTGGGCTAGAGGAGTTCGCTTGTCCATGACTAATAAAGATCACTTTTATGTCTTATTAACCTGTATATTTGTGCGGCCCTACGACGGAACAATTTCTTAATTTTCACAACTCCCTAGATTTTTTCTGCTCCACTCATAGCTTCAAACTCTCCTTTTTAAAGTCATGATAGTTGTTTAGAAGTTGATATATTGTTATCCGTATTCATGTTTGTGCTTCATAGCTTTAGAGTTGTAATAGCTAATATAAAGCTTTTGAAATCTTAATGAAATAAATTTTTGTTAATGGTAGGGCTCTCAACTTAGAGACGTACTTCTTGTGCTGAGCCATGAATTTGGCGTAATATTTTCTATCTTCTATTAGATCAATTAGTATTTAAACATTGTAGGATTAGATAGATGTGTTGTGACCTGTGAAATTAGTCAAGGAGAGCATGTTATTTCAAATTTCGGTTGTGTTGGTTGCAGGCCTTGGCATATGCATTGATGAGTGCTGGATCAGCTGCAGCTGGGATCTCAAATCTGAATCGTACTGGCATTCAACACACAGCTCTGCCTAACTTCTGTAAGCCATTACAACGCTTCTGTAACCATGTCGCCATCTCTATTGCCTTCACATTCTTTACATGTTGCTTGCTCACCACTTCTGCCATACAATATGTTATTTGGCTCTCCAAAAACTAAACCCCCTCATGAAAAACAAACAACTTGCTATCTCTGTGAAAAATATGACGTTCATTTCTGTTCCTTCAAGTCCCTTGAACGATCCATAAATCAAAAGGAACTTCTATGGTATAATGCATTGGAGTAGAGATGCCCATTTGACTCAGTGGTGGGGAATGCCGGATTAGACTACAAATTGGGGGGTTCTATTCCCACTCGGTGTCCATCCCTGCCTCGAATATATATATATTATTATAAGGTTTTAATTGTATATTTATATAATATTATTACTGTTCTTATTAATAATACTAAGTAGAGAATTGTTGTAATATTTAATCTTAATTTTGGGAAATTAAGAAGAACCATTTTAATAATACTAGATAACATTAACGCACTTATG

Coding sequence (CDS)

ATGAATACCACTGTGCATAGAACTCCCAATTCTGGGAGCCGGTCATTGTTCTACCAAGATTTAGCATCACCTGTTACGACGCGGAAAGGAAAATTTTCAACTCCAGGCCAGGCAGCTGCTGTTTCTGCTTTATGGCGGGAGAATTTTGGAAACTCAGATCTTCCTCCTCCTCCAGTTTTCACTTTGGAAGACCGCTCGGTTTCAGATTTTTCTCCCGAGTCTGGGATTCCTGATTATCCTGTTTCCCCAGAAACTAAATCAGACCCCAGGACCCCTATCCGAAGGCATGACTTCTCTTCGCCGACAAAAAACAAGTCAAATGCCAGCACTTCTTATACACCAATCAGTGGACAACAAAGCCGTCAGGGATCGGCTGGCTTTAGTTGGTGGTCAACATCGAAAGGTGGTGGGAGCGAGCAAGAAGATAAGGGAAAAAGTTCACCAGTCGAAGGTGTTATTCAACCTGGTGCATTAATCACACTTCCAACCCCGAGGGAAGTTGCCAGACCGGAGGTGCAAAGGAATTGCTTGCCTTTAGCAAAACTCAATGAAGAGGAATGGGTTACTGTCTATGGATTTTCCCCTGCTGATACAAATCTAGTTTTGAGGGAGTTTGAAAAATGCGGTGAGATCTTAAAACACCTTCCTGGTCCAAGAGACGCTAATTGGATGCACATTCTTTATCAGAACCGATCTGATGCTCAAAAGGCTCTCAATAAAAATGGTATTCAAATTAATGGGGTGCTAATTGTTGGTGTGAAACCAGTGGACCCAATGCATCGGCAGGCACTAGATGAAAGATTAAACAATCCAGGATTCATGGTTATCCCACCGGTATCATCTCGAACCTCAGAACTCCTTGCAACGAGAGGACCCATGCGTCCCTACAATCTTCAAAATGGTTACACTAGTGCACGGCACTCAGGAGGTGCCATAGCTTCACCATCGAAATCATTAGTATCTAAGGTCATGGATTTGATGTTTGGAGTCTAA

Protein sequence

MNTTVHRTPNSGSRSLFYQDLASPVTTRKGKFSTPGQAAAVSALWRENFGNSDLPPPPVFTLEDRSVSDFSPESGIPDYPVSPETKSDPRTPIRRHDFSSPTKNKSNASTSYTPISGQQSRQGSAGFSWWSTSKGGGSEQEDKGKSSPVEGVIQPGALITLPTPREVARPEVQRNCLPLAKLNEEEWVTVYGFSPADTNLVLREFEKCGEILKHLPGPRDANWMHILYQNRSDAQKALNKNGIQINGVLIVGVKPVDPMHRQALDERLNNPGFMVIPPVSSRTSELLATRGPMRPYNLQNGYTSARHSGGAIASPSKSLVSKVMDLMFGV
Homology
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BLAST of Cucsat.G3725 vs. ExPASy Swiss-Prot
Match: O04326 (Nuclear pore complex protein NUP35 OS=Arabidopsis thaliana OX=3702 GN=NUP35 PE=1 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 2.8e-30
Identity = 72/108 (66.67%), Postives = 82/108 (75.93%), Query Frame = 0 

Query: 1   MHILYQNRSDAQKALNKNGIQINGVLIVGVKPVDPMHRQALDERLNNPGFMVIPPVSSRT 60
           MHILYQNRSDA KALNK G+ INGV+IVGVKPVDP+ +QAL+ERLNN GFM +PP SS  
Sbjct: 225 MHILYQNRSDAHKALNKAGMMINGVVIVGVKPVDPIQKQALNERLNNQGFMPLPPPSSTR 284

Query: 61  SELLATRGPMRPYNLQNGYT-SARHSGGAIASPSKSLVSKVMDLMFGV 108
           +     R   RP  LQNG   S + SGGA+ASPSKS+VSK  DLMFGV
Sbjct: 285 N---TARPLSRPQYLQNGSAFSPQPSGGAMASPSKSMVSKFFDLMFGV 329

[Close]
BLAST of Cucsat.G3725 vs. ExPASy Swiss-Prot
Match: Q8NFH5 (Nucleoporin NUP35 OS=Homo sapiens OX=9606 GN=NUP35 PE=1 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 4.1e-05
Identity = 39/117 (33.33%), Postives = 60/117 (51.28%), Query Frame = 0 

Query: 1   MHILYQNRSDAQKALNKNGIQINGVLIVGVKP-VDPMHRQALDE-RLNNPGFMVIPPVSS 60
           MHI YQ++  A+KAL+K+G      +++GVKP +D    ++ D   L++P     PP+ +
Sbjct: 211 MHIRYQSKLQARKALSKDGRIFGESIMIGVKPCIDKSVMESSDRCALSSPSLAFTPPIKT 270

Query: 61  RTSELLATRGP----MRPYNLQNGYTSARHSGGAIA---SPSK--SLVSKVMDLMFG 107
             +       P    MRP  L   Y ++      I+   +P K  SLVSK M+ MFG
Sbjct: 271 LGTPTQPGSTPRISTMRP--LATAYKASTSDYQVISDRQTPKKDESLVSKAMEYMFG 325

[Close]
BLAST of Cucsat.G3725 vs. ExPASy Swiss-Prot
Match: Q6P6X9 (Nucleoporin NUP35 OS=Danio rerio OX=7955 GN=nup35 PE=1 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 5.4e-05
Identity = 35/113 (30.97%), Postives = 58/113 (51.33%), Query Frame = 0 

Query: 1   MHILYQNRSDAQKALNKNGIQINGVLIVGVKP-VDPMHRQALDERLNNPGFMVIPPVS-- 60
           MH+ YQ++  A+KAL+K+G      +++GVKP +D    ++LD+  +    +  PPV   
Sbjct: 196 MHVQYQSKLQARKALSKDGKIFGEAIMIGVKPCIDKSVMESLDKG-STSSSVFTPPVKAP 255

Query: 61  -SRTSELLATRGPMRPYNLQNGYTSARH---SGGAIASPSKSLVSKVMDLMFG 107
            + +  L   R  MRP +     +S+ +   S        +S VSK M+ MFG
Sbjct: 256 CTPSHPLSTPRSVMRPLSAAYKASSSDYQVVSDQQTPKKDESFVSKAMEYMFG 307

[Close]
BLAST of Cucsat.G3725 vs. NCBI nr
Match: XP_004141656.1 (nuclear pore complex protein NUP35 [Cucumis sativus] >KGN45595.1 hypothetical protein Csa_015598 [Cucumis sativus])

HSP 1 Score: 213 bits (543), Expect = 1.25e-66
Identity = 106/107 (99.07%), Postives = 107/107 (100.00%), Query Frame = 0 

Query: 1   MHILYQNRSDAQKALNKNGIQINGVLIVGVKPVDPMHRQALDERLNNPGFMVIPPVSSRT 60
           MHILYQNRSDAQKALNKNGIQINGVLIVGVKPVDPMHRQAL+ERLNNPGFMVIPPVSSRT
Sbjct: 224 MHILYQNRSDAQKALNKNGIQINGVLIVGVKPVDPMHRQALEERLNNPGFMVIPPVSSRT 283

Query: 61  SELLATRGPMRPYNLQNGYTSARHSGGAIASPSKSLVSKVMDLMFGV 107
           SELLATRGPMRPYNLQNGYTSARHSGGAIASPSKSLVSKVMDLMFGV
Sbjct: 284 SELLATRGPMRPYNLQNGYTSARHSGGAIASPSKSLVSKVMDLMFGV 330

[Close]
BLAST of Cucsat.G3725 vs. NCBI nr
Match: KAA0051033.1 (nuclear pore complex protein NUP35 [Cucumis melo var. makuwa] >TYK03828.1 nuclear pore complex protein NUP35 [Cucumis melo var. makuwa])

HSP 1 Score: 208 bits (530), Expect = 1.15e-64
Identity = 104/107 (97.20%), Postives = 106/107 (99.07%), Query Frame = 0 

Query: 1   MHILYQNRSDAQKALNKNGIQINGVLIVGVKPVDPMHRQALDERLNNPGFMVIPPVSSRT 60
           MHILYQNRSDAQKALNKNGIQINGVLIVGVKPVDPMHRQALDE+LNNPGFMVIPPVSSRT
Sbjct: 224 MHILYQNRSDAQKALNKNGIQINGVLIVGVKPVDPMHRQALDEKLNNPGFMVIPPVSSRT 283

Query: 61  SELLATRGPMRPYNLQNGYTSARHSGGAIASPSKSLVSKVMDLMFGV 107
           SELLATRGPMRPY+LQNG TSARHSGGAIASPSKSLVSKVMDLMFGV
Sbjct: 284 SELLATRGPMRPYSLQNGNTSARHSGGAIASPSKSLVSKVMDLMFGV 330

[Close]
BLAST of Cucsat.G3725 vs. NCBI nr
Match: XP_008462444.1 (PREDICTED: nuclear pore complex protein NUP35 [Cucumis melo])

HSP 1 Score: 206 bits (523), Expect = 1.31e-63
Identity = 103/107 (96.26%), Postives = 105/107 (98.13%), Query Frame = 0 

Query: 1   MHILYQNRSDAQKALNKNGIQINGVLIVGVKPVDPMHRQALDERLNNPGFMVIPPVSSRT 60
           MHILYQNRSDAQKALNKNGIQINGVLIVGVKPVDPMHRQALDE+LNNPGFMVIPPVSSRT
Sbjct: 224 MHILYQNRSDAQKALNKNGIQINGVLIVGVKPVDPMHRQALDEKLNNPGFMVIPPVSSRT 283

Query: 61  SELLATRGPMRPYNLQNGYTSARHSGGAIASPSKSLVSKVMDLMFGV 107
           SELLATRGPM PY+LQNG TSARHSGGAIASPSKSLVSKVMDLMFGV
Sbjct: 284 SELLATRGPMLPYSLQNGNTSARHSGGAIASPSKSLVSKVMDLMFGV 330

[Close]
BLAST of Cucsat.G3725 vs. NCBI nr
Match: XP_022151212.1 (nuclear pore complex protein NUP35 [Momordica charantia])

HSP 1 Score: 192 bits (488), Expect = 2.38e-58
Identity = 94/107 (87.85%), Postives = 101/107 (94.39%), Query Frame = 0 

Query: 1   MHILYQNRSDAQKALNKNGIQINGVLIVGVKPVDPMHRQALDERLNNPGFMVIPPVSSRT 60
           MHILYQNRSDA KALNKNG+QINGVLIVGVKPVDPMHRQALDE++NNPGFMVIPPV SRT
Sbjct: 222 MHILYQNRSDAHKALNKNGVQINGVLIVGVKPVDPMHRQALDEKINNPGFMVIPPVPSRT 281

Query: 61  SELLATRGPMRPYNLQNGYTSARHSGGAIASPSKSLVSKVMDLMFGV 107
           +ELLATRGP+R YNLQNG ++AR SGG IASPSKSLVSKVMDLMFGV
Sbjct: 282 TELLATRGPVRTYNLQNGNSNARQSGGTIASPSKSLVSKVMDLMFGV 328

[Close]
BLAST of Cucsat.G3725 vs. NCBI nr
Match: XP_038900103.1 (nuclear pore complex protein NUP35 [Benincasa hispida])

HSP 1 Score: 192 bits (487), Expect = 3.55e-58
Identity = 96/107 (89.72%), Postives = 101/107 (94.39%), Query Frame = 0 

Query: 1   MHILYQNRSDAQKALNKNGIQINGVLIVGVKPVDPMHRQALDERLNNPGFMVIPPVSSRT 60
           MHILYQNRSDA +ALNKNGIQINGVLIVGVKPVDPMHRQALDE+LN+PGFMV PPVSSRT
Sbjct: 224 MHILYQNRSDAHRALNKNGIQINGVLIVGVKPVDPMHRQALDEKLNHPGFMVTPPVSSRT 283

Query: 61  SELLATRGPMRPYNLQNGYTSARHSGGAIASPSKSLVSKVMDLMFGV 107
           SELLATRG +RPYNLQNG +SAR SGG IASPSKSLVSKVMDLMFGV
Sbjct: 284 SELLATRGLVRPYNLQNGNSSARQSGGTIASPSKSLVSKVMDLMFGV 330

[Close]
BLAST of Cucsat.G3725 vs. ExPASy TrEMBL
Match: A0A0A0K7B2 (Nuclear pore complex protein NUP35 OS=Cucumis sativus OX=3659 GN=Csa_7G452990 PE=3 SV=1)

HSP 1 Score: 213 bits (543), Expect = 6.06e-67
Identity = 106/107 (99.07%), Postives = 107/107 (100.00%), Query Frame = 0 

Query: 1   MHILYQNRSDAQKALNKNGIQINGVLIVGVKPVDPMHRQALDERLNNPGFMVIPPVSSRT 60
           MHILYQNRSDAQKALNKNGIQINGVLIVGVKPVDPMHRQAL+ERLNNPGFMVIPPVSSRT
Sbjct: 224 MHILYQNRSDAQKALNKNGIQINGVLIVGVKPVDPMHRQALEERLNNPGFMVIPPVSSRT 283

Query: 61  SELLATRGPMRPYNLQNGYTSARHSGGAIASPSKSLVSKVMDLMFGV 107
           SELLATRGPMRPYNLQNGYTSARHSGGAIASPSKSLVSKVMDLMFGV
Sbjct: 284 SELLATRGPMRPYNLQNGYTSARHSGGAIASPSKSLVSKVMDLMFGV 330

[Close]
BLAST of Cucsat.G3725 vs. ExPASy TrEMBL
Match: A0A5A7U592 (Nuclear pore complex protein NUP35 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G00200 PE=3 SV=1)

HSP 1 Score: 208 bits (530), Expect = 5.58e-65
Identity = 104/107 (97.20%), Postives = 106/107 (99.07%), Query Frame = 0 

Query: 1   MHILYQNRSDAQKALNKNGIQINGVLIVGVKPVDPMHRQALDERLNNPGFMVIPPVSSRT 60
           MHILYQNRSDAQKALNKNGIQINGVLIVGVKPVDPMHRQALDE+LNNPGFMVIPPVSSRT
Sbjct: 224 MHILYQNRSDAQKALNKNGIQINGVLIVGVKPVDPMHRQALDEKLNNPGFMVIPPVSSRT 283

Query: 61  SELLATRGPMRPYNLQNGYTSARHSGGAIASPSKSLVSKVMDLMFGV 107
           SELLATRGPMRPY+LQNG TSARHSGGAIASPSKSLVSKVMDLMFGV
Sbjct: 284 SELLATRGPMRPYSLQNGNTSARHSGGAIASPSKSLVSKVMDLMFGV 330

[Close]
BLAST of Cucsat.G3725 vs. ExPASy TrEMBL
Match: A0A1S3CH09 (Nuclear pore complex protein NUP35 OS=Cucumis melo OX=3656 GN=LOC103500791 PE=3 SV=1)

HSP 1 Score: 206 bits (523), Expect = 6.36e-64
Identity = 103/107 (96.26%), Postives = 105/107 (98.13%), Query Frame = 0 

Query: 1   MHILYQNRSDAQKALNKNGIQINGVLIVGVKPVDPMHRQALDERLNNPGFMVIPPVSSRT 60
           MHILYQNRSDAQKALNKNGIQINGVLIVGVKPVDPMHRQALDE+LNNPGFMVIPPVSSRT
Sbjct: 224 MHILYQNRSDAQKALNKNGIQINGVLIVGVKPVDPMHRQALDEKLNNPGFMVIPPVSSRT 283

Query: 61  SELLATRGPMRPYNLQNGYTSARHSGGAIASPSKSLVSKVMDLMFGV 107
           SELLATRGPM PY+LQNG TSARHSGGAIASPSKSLVSKVMDLMFGV
Sbjct: 284 SELLATRGPMLPYSLQNGNTSARHSGGAIASPSKSLVSKVMDLMFGV 330

[Close]
BLAST of Cucsat.G3725 vs. ExPASy TrEMBL
Match: A0A6J1DCV4 (Nuclear pore complex protein NUP35 OS=Momordica charantia OX=3673 GN=LOC111019186 PE=3 SV=1)

HSP 1 Score: 192 bits (488), Expect = 1.15e-58
Identity = 94/107 (87.85%), Postives = 101/107 (94.39%), Query Frame = 0 

Query: 1   MHILYQNRSDAQKALNKNGIQINGVLIVGVKPVDPMHRQALDERLNNPGFMVIPPVSSRT 60
           MHILYQNRSDA KALNKNG+QINGVLIVGVKPVDPMHRQALDE++NNPGFMVIPPV SRT
Sbjct: 222 MHILYQNRSDAHKALNKNGVQINGVLIVGVKPVDPMHRQALDEKINNPGFMVIPPVPSRT 281

Query: 61  SELLATRGPMRPYNLQNGYTSARHSGGAIASPSKSLVSKVMDLMFGV 107
           +ELLATRGP+R YNLQNG ++AR SGG IASPSKSLVSKVMDLMFGV
Sbjct: 282 TELLATRGPVRTYNLQNGNSNARQSGGTIASPSKSLVSKVMDLMFGV 328

[Close]
BLAST of Cucsat.G3725 vs. ExPASy TrEMBL
Match: A0A067ESX1 (RRM Nup35-type domain-containing protein OS=Citrus sinensis OX=2711 GN=CISIN_1g031896mg PE=4 SV=1)

HSP 1 Score: 166 bits (420), Expect = 1.22e-50
Identity = 81/107 (75.70%), Postives = 94/107 (87.85%), Query Frame = 0 

Query: 1   MHILYQNRSDAQKALNKNGIQINGVLIVGVKPVDPMHRQALDERLNNPGFMVIPPVSSRT 60
           MHILYQNRSDAQKAL+KNG+QINGVLIVGVKP+DPM RQAL+ER+N+ GFM +PP SSRT
Sbjct: 45  MHILYQNRSDAQKALSKNGMQINGVLIVGVKPLDPMQRQALNERINSQGFMTLPPPSSRT 104

Query: 61  SELLATRGPMRPYNLQNGYTSARHSGGAIASPSKSLVSKVMDLMFGV 107
           SEL + R   RPY LQNG+TS   SGGAIASP+KS+VSK+MDLMFG+
Sbjct: 105 SELNSFRASSRPYYLQNGHTSTGQSGGAIASPAKSMVSKIMDLMFGI 151

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BLAST of Cucsat.G3725 vs. TAIR 10
Match: AT3G16310.1 (mitotic phosphoprotein N' end (MPPN) family protein )

HSP 1 Score: 132.5 bits (332), Expect = 2.0e-31
Identity = 72/108 (66.67%), Postives = 82/108 (75.93%), Query Frame = 0 

Query: 1   MHILYQNRSDAQKALNKNGIQINGVLIVGVKPVDPMHRQALDERLNNPGFMVIPPVSSRT 60
           MHILYQNRSDA KALNK G+ INGV+IVGVKPVDP+ +QAL+ERLNN GFM +PP SS  
Sbjct: 225 MHILYQNRSDAHKALNKAGMMINGVVIVGVKPVDPIQKQALNERLNNQGFMPLPPPSSTR 284

Query: 61  SELLATRGPMRPYNLQNGYT-SARHSGGAIASPSKSLVSKVMDLMFGV 108
           +     R   RP  LQNG   S + SGGA+ASPSKS+VSK  DLMFGV
Sbjct: 285 N---TARPLSRPQYLQNGSAFSPQPSGGAMASPSKSMVSKFFDLMFGV 329

The following BLAST results are available for this feature:
BLAST of Cucsat.G3725 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
O043262.8e-3066.67Nuclear pore complex protein NUP35 OS=Arabidopsis thaliana OX=3702 GN=NUP35 PE=1... [more]
Q8NFH54.1e-0533.33Nucleoporin NUP35 OS=Homo sapiens OX=9606 GN=NUP35 PE=1 SV=1[more]
Q6P6X95.4e-0530.97Nucleoporin NUP35 OS=Danio rerio OX=7955 GN=nup35 PE=1 SV=1[more]
BLAST of Cucsat.G3725 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004141656.11.25e-6699.07nuclear pore complex protein NUP35 [Cucumis sativus] >KGN45595.1 hypothetical pr... [more]
KAA0051033.11.15e-6497.20nuclear pore complex protein NUP35 [Cucumis melo var. makuwa] >TYK03828.1 nuclea... [more]
XP_008462444.11.31e-6396.26PREDICTED: nuclear pore complex protein NUP35 [Cucumis melo][more]
XP_022151212.12.38e-5887.85nuclear pore complex protein NUP35 [Momordica charantia][more]
XP_038900103.13.55e-5889.72nuclear pore complex protein NUP35 [Benincasa hispida][more]
BLAST of Cucsat.G3725 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K7B26.06e-6799.07Nuclear pore complex protein NUP35 OS=Cucumis sativus OX=3659 GN=Csa_7G452990 PE... [more]
A0A5A7U5925.58e-6597.20Nuclear pore complex protein NUP35 OS=Cucumis melo var. makuwa OX=1194695 GN=E56... [more]
A0A1S3CH096.36e-6496.26Nuclear pore complex protein NUP35 OS=Cucumis melo OX=3656 GN=LOC103500791 PE=3 ... [more]
A0A6J1DCV41.15e-5887.85Nuclear pore complex protein NUP35 OS=Momordica charantia OX=3673 GN=LOC11101918... [more]
A0A067ESX11.22e-5075.70RRM Nup35-type domain-containing protein OS=Citrus sinensis OX=2711 GN=CISIN_1g0... [more]
BLAST of Cucsat.G3725 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G16310.12.0e-3166.67mitotic phosphoprotein N' end (MPPN) family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR017389Nucleoporin, NUP53PIRSFPIRSF038119NUP53coord: 3..330
e-value: 3.9E-100
score: 333.8
IPR017389Nucleoporin, NUP53PANTHERPTHR21527NUCLEOPORIN NUP35coord: 1..330
IPR007846RNA-recognition motif (RRM) Nup35-type domainPFAMPF05172Nup35_RRMcoord: 183..266
e-value: 1.6E-25
score: 89.0
IPR007846RNA-recognition motif (RRM) Nup35-type domainPROSITEPS51472RRM_NUP35coord: 182..263
score: 33.100819
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 183..256
e-value: 1.5E-27
score: 97.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 102..137
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 50..153
NoneNo IPR availableCDDcd12441RRM_Nup53_likecoord: 185..258
e-value: 1.7365E-36
score: 124.261
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 185..261

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsat.G3725.T2Cucsat.G3725.T2mRNA
Cucsat.G3725.T3Cucsat.G3725.T3mRNA
Cucsat.G3725.T1Cucsat.G3725.T1mRNA
Cucsat.G3725.T7Cucsat.G3725.T7mRNA
Cucsat.G3725.T4Cucsat.G3725.T4mRNA
Cucsat.G3725.T8Cucsat.G3725.T8mRNA
Cucsat.G3725.T6Cucsat.G3725.T6mRNA
Cucsat.G3725.T9Cucsat.G3725.T9mRNA
Cucsat.G3725.T10Cucsat.G3725.T10mRNA
Cucsat.G3725.T11Cucsat.G3725.T11mRNA
Cucsat.G3725.T5Cucsat.G3725.T5mRNA
Cucsat.G3725.T12Cucsat.G3725.T12mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0051028 mRNA transport
biological_process GO:0006607 NLS-bearing protein import into nucleus
biological_process GO:0006999 nuclear pore organization
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0006913 nucleocytoplasmic transport
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0031965 nuclear membrane
cellular_component GO:0044613 nuclear pore central transport channel
cellular_component GO:0044615 nuclear pore nuclear basket
cellular_component GO:0005886 plasma membrane
molecular_function GO:0051539 4 iron, 4 sulfur cluster binding
molecular_function GO:0005543 phospholipid binding
molecular_function GO:0003697 single-stranded DNA binding
molecular_function GO:0017056 structural constituent of nuclear pore
molecular_function GO:0003676 nucleic acid binding