Cucsat.G3003 (gene) Cucumber (B10) v3

Overview


Name	Cucsat.G3003
Type	gene
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	DNA-directed RNA polymerases II, IV and V subunit 11-like
Location	ctg1041: 6406797 .. 6409152 (-)
RNA-Seq Expression	Cucsat.G3003
Synteny	Cucsat.G3003

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTTCTTAGAGTTTCAGTTTCATAGAGAAGAAAAAGAAAAACGATGAATGTCCCTGATCGCTACGAGCGCTTCGTCGTTCCTGAGGGCGCCAAGAAGTTAATTCTTGAAACCCTAATTCTTTTCATCATCTCTTTAACTTCACGATCGATTTTGCTTTTCTTCTACATACACTACAACCGTCTCTGTTATGATTTTCTTTTCTGGACGGATGTCGATTTTGTTGAACATTGCAGGGTTTCATACGAGAGAGACACGAAGATCATGAATGCAGCCACATTTATATTAGAGAGAGAGGATCATACTATCGGAAACATTCTCCGCATGTAGGGGTTTTCTGTTAATCGGACGAGATGGTTTTTCTGGCGATTTTAATTAATTGTTTCGTTTTTGTTTATTAACTAACATGTATTGATCTTTTTCAATGGCCTGAATAATTAGGCAACTTCATAGAGATGATAATGTGCTGTTTGCTGGCTACCAGCTTCCTCATCCTCTTAAGTACAGAATACTTGTTCGGGTTAGTACTTTGATTGTTTTTCCATTGCTTAATTTTTGCTCTATTGCATGAATAGTATTATGAGCATTTTTTTAGCGCAATTTTGCTGTTTGGTAATGACTGGTCGAAGTGAATTGCTTAATCAGTGTTATTGTTTGTTCTCATAGTAATCATTTATTTGAGATTGACTGATCGAATGAAAATTTGATCGATGGCAGGGCAGAACAAAAACGTGTACAGTAAATTTCGAATTATACCTTTTAAGTTCTTTTTATGATGAAATGTTTGAAATCTGAACGTTATTTTGTATAATTGTCTTTGTCTTAGTCTTAGATGAATTAGGTGTTTCCTCTATTTTTCACTCGGTTCTTGGACTGGAGTTCATATAACCAATTTGCCTTATAGGAAGTGAAAACTTACTTGAATTCTTAAGCTCATTATCCTATTACAGTAACATTTTCCTTTTCTCCCAGAAAGGTCACGAATTCCTGGGGAGAGAACCCCGATTATAAATTTCTTGAGGATGGCAAATATTTTGCAGATACTGATTGGTTTTGAAAACTAACATTCTATGTAGCTTTATTATGGTCGTTGATTAAATTTCAATTATCCATTGAGTTCTGACGATGTTCTTTTATCATAATTATTTTATGTTTTAGATGTAATTTTTCTGCAGATACAAACTGCTAGCCAGTCTTCACCGATGCAGGCATATAATCAGGCTATCAATGATCTGGATAAGGAGCTCGACGTTTTGAAATACGAGCTTGAGGTAATGCTTTCACTCCCACTTGACTTTTTTTTTTTCTCTCTGCAATTGGAGTGAGGTGAGTAGGATTTGTTCTTATTCATTACGAGGGAATCCAATGATTCTCTGATTATTTTGCTCTAAAGCTTTACACCTATTTTCTTTTGTTTTTGCTCTTACATTATCAAACAATTGATCTTTTAGTACTAATGTGGAAATTTGAATATCCAACTTTCAGTACATATGACTATGCTCACTTGGGCTTTCAATGGTTGGTTTGAATCCGTGATATTGTTAAATGTTCATATTACATTTAAACTCCAACACGGATGGGGTATAGTTTATAGTACTAAGTTCATTTCAAATTATTTGAGGTTTTTGTTAAATGCCCTTTAACAATTTACCCCCCAAGTTCAAGTGAGTAGCCAACTCCATGTTCAAATTTAATAGTTAGTACTTTCAACTATTATAACATATAAATATATAATTAACTACAATATTATTACTTCAAATCTCAATTTAAAAATTTCTTTTTATTGTTTGTGTTTATTATTTTCTACCCATTTCCTCTAAATTATTTTCGAGCTAAAAAACAAACTATCATAGTACATACTAAAATATTTTATACCGCAAACCTAACTTATTGTAGCCACTTACCTATAATGCATAGACTATAATATACAACTCAATGCTTCAAACATCCTTGTTAGTTATTTTCTACCAAGTTTGGACAAAAAGTTAGTCTAAATTTATAAAAGGAAGAAGAAAAAAAAGAGAAGATAGTGGCATCATTATTATCAATTTATTATTTACATTTGTTATGCGCTTCATGCAGGGTGAGATTTCAAGGTTCTCGAGGGCCTATTAGTTACCCATCCAAGAAAACCAAGGGAAAGTTTGAGTTCAATAACGTCGAGTTGGGAATGGAATGCCAATGTTAAAATTTACGGCCACTTTTTAGCCTGGTTCCTTACGGCGGTGGGAGTTGGTTGTGTAAATGGAAAGTTCAAATTTGCATCTAAAAAAGAGAAACCATTTTAGTTTAGTATTGATTTGAAATAAATATTTTGAACTGTGTATTCCATTTCAATAATAATTCACCATTCTAGAATT

Coding sequence (CDS)

ATGAATGTCCCTGATCGCTACGAGCGCTTCGTCGTTCCTGAGGGCGCCAAGAAGTTAATTCTTGAAACCCTAATTCTTTTCATCATCTCTTTAACTTCACGATCGATTTTGCTTTTCTTCTACATACACTACAACCGTCTCTGTTATGATTTTCTTTTCTGGACGGATGTCGATTTTGTTGAACATTGCAGGGTTTCATACGAGAGAGACACGAAGATCATGAATGCAGCCACATTTATATTAGAGAGAGAGGATCATACTATCGGAAACATTCTCCGCATGCAACTTCATAGAGATGATAATGTGCTGTTTGCTGGCTACCAGCTTCCTCATCCTCTTAAGTACAGAATACTTGTTCGGATACAAACTGCTAGCCAGTCTTCACCGATGCAGGCATATAATCAGGCTATCAATGATCTGGATAAGGAGCTCGACGTTTTGAAATACGAGCTTGAGGGTGAGATTTCAAGGTTCTCGAGGGCCTATTAG

Protein sequence

MNVPDRYERFVVPEGAKKLILETLILFIISLTSRSILLFFYIHYNRLCYDFLFWTDVDFVEHCRVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAGYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDVLKYELEGEISRFSRAY

Homology

[Close]

BLAST of Cucsat.G3003 vs. ExPASy Swiss-Prot
Match: Q38859 (DNA-directed RNA polymerases II, IV and V subunit 11 OS=Arabidopsis thaliana OX=3702 GN=NRPB11 PE=1 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 1.7e-49
Identity = 91/116 (78.45%), Postives = 105/116 (90.52%), Query Frame = 0


Query: 1   MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAG 60
           MN P+RYERFVVPEG KKVSY+RDTKI+NAA+F +EREDHTIGNI+RMQLHRD+NVLFAG
Sbjct: 1   MNAPERYERFVVPEGTKKVSYDRDTKIINAASFTVEREDHTIGNIVRMQLHRDENVLFAG 60

Query: 61  YQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDVLKYELEGEISRFSRAY 117
           YQLPHPLKY+I+VRI T SQSSPMQAYNQAINDLDKELD LK + E E+++FS  +
Sbjct: 61  YQLPHPLKYKIIVRIHTTSQSSPMQAYNQAINDLDKELDYLKNQFEAEVAKFSNQF 116

[Close]

BLAST of Cucsat.G3003 vs. ExPASy Swiss-Prot
Match: O08740 (DNA-directed RNA polymerase II subunit RPB11 OS=Mus musculus OX=10090 GN=Polr2j PE=1 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 1.3e-25
Identity = 51/109 (46.79%), Postives = 76/109 (69.72%), Query Frame = 0


Query: 1   MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAG 60
           MN P  +E F++ EG KK++  +DTK+ NA  F + +EDHT+GNI++ QL +D  VLFAG
Sbjct: 1   MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAG 60

Query: 61  YQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDVLKYELEGEI 110
           Y++PHPL+++I++R+QT    SP +A+  AI DL  EL +L+    G I
Sbjct: 61  YKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRGAI 109

[Close]

BLAST of Cucsat.G3003 vs. ExPASy Swiss-Prot
Match: Q86JJ5 (DNA-directed RNA polymerase II subunit rpb11 OS=Dictyostelium discoideum OX=44689 GN=polr2j PE=3 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 1.8e-25
Identity = 50/102 (49.02%), Postives = 78/102 (76.47%), Query Frame = 0


Query: 1   MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAG 60
           MN PDR+E FV+P+GAKKV+  RDTKI NA+ F + +EDHTIGN++RMQL  D +++FAG
Sbjct: 1   MNAPDRFELFVLPDGAKKVTMVRDTKIPNASMFTILKEDHTIGNLIRMQLIADQDIIFAG 60

Query: 61  YQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDVLK 103
           Y++PHPL++ + +RIQT + ++P++   +++  L +E   L+
Sbjct: 61  YRMPHPLEHNVNIRIQTNNNTNPLECVQKSMECLSREFTSLE 102

[Close]

BLAST of Cucsat.G3003 vs. ExPASy Swiss-Prot
Match: Q32P79 (DNA-directed RNA polymerase II subunit RPB11 OS=Bos taurus OX=9913 GN=POLR2J PE=1 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 6.7e-25
Identity = 49/102 (48.04%), Postives = 74/102 (72.55%), Query Frame = 0


Query: 1   MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAG 60
           MN P  +E F++ EG KK++  +DTK+ NA  F + +EDHT+GNI++ QL +D  VLFAG
Sbjct: 1   MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAG 60

Query: 61  YQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDVLK 103
           Y++PHPL+++I++R+QT    SP +A+  AI DL  EL +L+
Sbjct: 61  YKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLE 102

[Close]

BLAST of Cucsat.G3003 vs. ExPASy Swiss-Prot
Match: P52435 (DNA-directed RNA polymerase II subunit RPB11-a OS=Homo sapiens OX=9606 GN=POLR2J PE=1 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 6.7e-25
Identity = 49/102 (48.04%), Postives = 74/102 (72.55%), Query Frame = 0


Query: 1   MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAG 60
           MN P  +E F++ EG KK++  +DTK+ NA  F + +EDHT+GNI++ QL +D  VLFAG
Sbjct: 1   MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAG 60

Query: 61  YQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDVLK 103
           Y++PHPL+++I++R+QT    SP +A+  AI DL  EL +L+
Sbjct: 61  YKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLE 102

[Close]

BLAST of Cucsat.G3003 vs. NCBI nr
Match: XP_004135939.1 (DNA-directed RNA polymerases II, IV and V subunit 11 isoform X3 [Cucumis sativus] >KAE8646398.1 hypothetical protein Csa_016830 [Cucumis sativus])

HSP 1 Score: 236 bits (601), Expect = 3.02e-78
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0


Query: 1   MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAG 60
           MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAG
Sbjct: 1   MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAG 60

Query: 61  YQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDVLKYELEGEISRFSRAY 116
           YQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDVLKYELEGEISRFSRAY
Sbjct: 61  YQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDVLKYELEGEISRFSRAY 116

[Close]

BLAST of Cucsat.G3003 vs. NCBI nr
Match: XP_008461312.1 (PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 11-like [Cucumis melo])

HSP 1 Score: 233 bits (595), Expect = 2.49e-77
Identity = 115/116 (99.14%), Postives = 115/116 (99.14%), Query Frame = 0


Query: 1   MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAG 60
           MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAG
Sbjct: 1   MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAG 60

Query: 61  YQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDVLKYELEGEISRFSRAY 116
           YQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDVLKYELE EISRFSRAY
Sbjct: 61  YQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDVLKYELESEISRFSRAY 116

[Close]

BLAST of Cucsat.G3003 vs. NCBI nr
Match: XP_038899336.1 (DNA-directed RNA polymerases II, IV and V subunit 11-like [Benincasa hispida])

HSP 1 Score: 231 bits (590), Expect = 1.44e-76
Identity = 114/116 (98.28%), Postives = 115/116 (99.14%), Query Frame = 0


Query: 1   MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAG 60
           MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIG+ILRMQLHRDDNVLFAG
Sbjct: 1   MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGHILRMQLHRDDNVLFAG 60

Query: 61  YQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDVLKYELEGEISRFSRAY 116
           YQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDVLKYELEGEISRFSR Y
Sbjct: 61  YQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDVLKYELEGEISRFSRNY 116

[Close]

BLAST of Cucsat.G3003 vs. NCBI nr
Match: XP_023004699.1 (DNA-directed RNA polymerases II, IV and V subunit 11-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 226 bits (577), Expect = 1.39e-74
Identity = 110/116 (94.83%), Postives = 113/116 (97.41%), Query Frame = 0


Query: 1   MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAG 60
           MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFI+EREDHTIGNI+RMQLHRDDNVLFA 
Sbjct: 1   MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFIVEREDHTIGNIIRMQLHRDDNVLFAA 60

Query: 61  YQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDVLKYELEGEISRFSRAY 116
           YQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDVLKYELEG  SRFSR+Y
Sbjct: 61  YQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDVLKYELEGAFSRFSRSY 116

[Close]

BLAST of Cucsat.G3003 vs. NCBI nr
Match: XP_022960210.1 (DNA-directed RNA polymerases II, IV and V subunit 11-like isoform X1 [Cucurbita moschata] >XP_023514374.1 DNA-directed RNA polymerases II, IV and V subunit 11-like isoform X1 [Cucurbita pepo subsp. pepo] >KAG7025644.1 DNA-directed RNA polymerases II, IV and V subunit 11 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 226 bits (576), Expect = 1.97e-74
Identity = 110/116 (94.83%), Postives = 112/116 (96.55%), Query Frame = 0


Query: 1   MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAG 60
           MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFI+EREDHTIGNI+RMQLHRDDNVLFA 
Sbjct: 1   MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFIVEREDHTIGNIIRMQLHRDDNVLFAA 60

Query: 61  YQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDVLKYELEGEISRFSRAY 116
           YQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDVLKYELEG  SRFSR Y
Sbjct: 61  YQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDVLKYELEGAFSRFSRTY 116

[Close]

BLAST of Cucsat.G3003 vs. ExPASy TrEMBL
Match: A0A1S3CFN3 (DNA-directed RNA polymerases II, IV and V subunit 11-like OS=Cucumis melo OX=3656 GN=LOC103499938 PE=3 SV=1)

HSP 1 Score: 233 bits (595), Expect = 1.20e-77
Identity = 115/116 (99.14%), Postives = 115/116 (99.14%), Query Frame = 0


Query: 1   MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAG 60
           MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAG
Sbjct: 1   MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAG 60

Query: 61  YQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDVLKYELEGEISRFSRAY 116
           YQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDVLKYELE EISRFSRAY
Sbjct: 61  YQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDVLKYELESEISRFSRAY 116

[Close]

BLAST of Cucsat.G3003 vs. ExPASy TrEMBL
Match: A0A6J1KX24 (DNA-directed RNA polymerases II, IV and V subunit 11-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111497917 PE=3 SV=1)

HSP 1 Score: 226 bits (577), Expect = 6.71e-75
Identity = 110/116 (94.83%), Postives = 113/116 (97.41%), Query Frame = 0


Query: 1   MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAG 60
           MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFI+EREDHTIGNI+RMQLHRDDNVLFA 
Sbjct: 1   MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFIVEREDHTIGNIIRMQLHRDDNVLFAA 60

Query: 61  YQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDVLKYELEGEISRFSRAY 116
           YQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDVLKYELEG  SRFSR+Y
Sbjct: 61  YQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDVLKYELEGAFSRFSRSY 116

[Close]

BLAST of Cucsat.G3003 vs. ExPASy TrEMBL
Match: A0A6J1H8G6 (DNA-directed RNA polymerases II, IV and V subunit 11-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111461018 PE=3 SV=1)

HSP 1 Score: 226 bits (576), Expect = 9.53e-75
Identity = 110/116 (94.83%), Postives = 112/116 (96.55%), Query Frame = 0


Query: 1   MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAG 60
           MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFI+EREDHTIGNI+RMQLHRDDNVLFA 
Sbjct: 1   MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFIVEREDHTIGNIIRMQLHRDDNVLFAA 60

Query: 61  YQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDVLKYELEGEISRFSRAY 116
           YQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDVLKYELEG  SRFSR Y
Sbjct: 61  YQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDVLKYELEGAFSRFSRTY 116

[Close]

BLAST of Cucsat.G3003 vs. ExPASy TrEMBL
Match: A0A6J1DA06 (DNA-directed RNA polymerases II, IV and V subunit 11-like OS=Momordica charantia OX=3673 GN=LOC111019017 PE=3 SV=1)

HSP 1 Score: 223 bits (568), Expect = 1.58e-73
Identity = 107/116 (92.24%), Postives = 112/116 (96.55%), Query Frame = 0


Query: 1   MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAG 60
           MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHT+GNILRMQLHRDDNVLFA 
Sbjct: 1   MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAA 60

Query: 61  YQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDVLKYELEGEISRFSRAY 116
           YQLPHPLKYRIL+RI TASQSSPMQAYNQA+NDLDKELD LK+ELE E+SRFSRAY
Sbjct: 61  YQLPHPLKYRILIRIHTASQSSPMQAYNQAVNDLDKELDHLKFELESELSRFSRAY 116

[Close]

BLAST of Cucsat.G3003 vs. ExPASy TrEMBL
Match: A0A6J1KVB7 (DNA-directed RNA polymerases II, IV and V subunit 11-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111497917 PE=3 SV=1)

HSP 1 Score: 218 bits (555), Expect = 1.43e-71
Identity = 108/116 (93.10%), Postives = 111/116 (95.69%), Query Frame = 0


Query: 1   MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAG 60
           MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFI+EREDHTIGNI+RMQLHRDDNVLFA 
Sbjct: 1   MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFIVEREDHTIGNIIRMQLHRDDNVLFAA 60

Query: 61  YQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDVLKYELEGEISRFSRAY 116
           YQLPHPLKYRILVR  TASQSSPMQAYNQAINDLDKELDVLKYELEG  SRFSR+Y
Sbjct: 61  YQLPHPLKYRILVR--TASQSSPMQAYNQAINDLDKELDVLKYELEGAFSRFSRSY 114

[Close]

BLAST of Cucsat.G3003 vs. TAIR 10
Match: AT3G52090.1 (DNA-directed RNA polymerase, RBP11-like )

HSP 1 Score: 196.4 bits (498), Expect = 1.2e-50
Identity = 91/116 (78.45%), Postives = 105/116 (90.52%), Query Frame = 0


Query: 1   MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAG 60
           MN P+RYERFVVPEG KKVSY+RDTKI+NAA+F +EREDHTIGNI+RMQLHRD+NVLFAG
Sbjct: 1   MNAPERYERFVVPEGTKKVSYDRDTKIINAASFTVEREDHTIGNIVRMQLHRDENVLFAG 60

Query: 61  YQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDVLKYELEGEISRFSRAY 117
           YQLPHPLKY+I+VRI T SQSSPMQAYNQAINDLDKELD LK + E E+++FS  +
Sbjct: 61  YQLPHPLKYKIIVRIHTTSQSSPMQAYNQAINDLDKELDYLKNQFEAEVAKFSNQF 116

[Close]

BLAST of Cucsat.G3003 vs. TAIR 10
Match: AT3G52090.2 (DNA-directed RNA polymerase, RBP11-like )

HSP 1 Score: 180.6 bits (457), Expect = 7.0e-46
Identity = 91/146 (62.33%), Postives = 105/146 (71.92%), Query Frame = 0


Query: 1   MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAG 60
           MN P+RYERFVVPEG KKVSY+RDTKI+NAA+F +EREDHTIGNI+RMQLHRD+NVLFAG
Sbjct: 1   MNAPERYERFVVPEGTKKVSYDRDTKIINAASFTVEREDHTIGNIVRMQLHRDENVLFAG 60

Query: 61  YQLPHPLKYRILVR------------------------------IQTASQSSPMQAYNQA 117
           YQLPHPLKY+I+VR                              I T SQSSPMQAYNQA
Sbjct: 61  YQLPHPLKYKIIVRDPKDWFRNLKVVYGCLETVNISWFKLLVLTIHTTSQSSPMQAYNQA 120

The following BLAST results are available for this feature:

BLAST of Cucsat.G3003 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q38859	1.7e-49	78.45	DNA-directed RNA polymerases II, IV and V subunit 11 OS=Arabidopsis thaliana OX=...	[more]
O08740	1.3e-25	46.79	DNA-directed RNA polymerase II subunit RPB11 OS=Mus musculus OX=10090 GN=Polr2j ...	[more]
Q86JJ5	1.8e-25	49.02	DNA-directed RNA polymerase II subunit rpb11 OS=Dictyostelium discoideum OX=4468...	[more]
Q32P79	6.7e-25	48.04	DNA-directed RNA polymerase II subunit RPB11 OS=Bos taurus OX=9913 GN=POLR2J PE=...	[more]
P52435	6.7e-25	48.04	DNA-directed RNA polymerase II subunit RPB11-a OS=Homo sapiens OX=9606 GN=POLR2J...	[more]

BLAST of Cucsat.G3003 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004135939.1	3.02e-78	100.00	DNA-directed RNA polymerases II, IV and V subunit 11 isoform X3 [Cucumis sativus...	[more]
XP_008461312.1	2.49e-77	99.14	PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 11-like [Cucumis me...	[more]
XP_038899336.1	1.44e-76	98.28	DNA-directed RNA polymerases II, IV and V subunit 11-like [Benincasa hispida]	[more]
XP_023004699.1	1.39e-74	94.83	DNA-directed RNA polymerases II, IV and V subunit 11-like isoform X1 [Cucurbita ...	[more]
XP_022960210.1	1.97e-74	94.83	DNA-directed RNA polymerases II, IV and V subunit 11-like isoform X1 [Cucurbita ...	[more]

BLAST of Cucsat.G3003 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CFN3	1.20e-77	99.14	DNA-directed RNA polymerases II, IV and V subunit 11-like OS=Cucumis melo OX=365...	[more]
A0A6J1KX24	6.71e-75	94.83	DNA-directed RNA polymerases II, IV and V subunit 11-like isoform X1 OS=Cucurbit...	[more]
A0A6J1H8G6	9.53e-75	94.83	DNA-directed RNA polymerases II, IV and V subunit 11-like isoform X1 OS=Cucurbit...	[more]
A0A6J1DA06	1.58e-73	92.24	DNA-directed RNA polymerases II, IV and V subunit 11-like OS=Momordica charantia...	[more]
A0A6J1KVB7	1.43e-71	93.10	DNA-directed RNA polymerases II, IV and V subunit 11-like isoform X2 OS=Cucurbit...	[more]

BLAST of Cucsat.G3003 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G52090.1	1.2e-50	78.45	DNA-directed RNA polymerase, RBP11-like	[more]
AT3G52090.2	7.0e-46	62.33	DNA-directed RNA polymerase, RBP11-like	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 130..150
None	No IPR available	PANTHER	PTHR13946:SF16	DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11	coord: 1..156
None	No IPR available	PANTHER	PTHR13946	DNA-DIRECTED RNA POLYMERASE I,II,III	coord: 1..156
IPR009025	DNA-directed RNA polymerase, RBP11-like dimerisation domain	PFAM	PF13656	RNA_pol_L_2	coord: 77..148 e-value: 1.9E-24 score: 85.2
IPR036603	RNA polymerase, RBP11-like subunit	GENE3D	3.30.1360.10		coord: 1..160 e-value: 3.5E-46 score: 157.7
IPR036603	RNA polymerase, RBP11-like subunit	SUPERFAMILY	55257	RBP11-like subunits of RNA polymerase	coord: 64..158
IPR008193	DNA-directed RNA polymerase Rpb11, 13-16kDa subunit, conserved site	PROSITE	PS01154	RNA_POL_L_13KD	coord: 81..112
IPR037685	RNA polymerase RBP11	CDD	cd06926	RNAP_II_RPB11	coord: 64..148 e-value: 9.58379E-44 score: 138.109

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsat.G3003.T1	Cucsat.G3003.T1	mRNA
Cucsat.G3003.T2	Cucsat.G3003.T2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006366	transcription by RNA polymerase II
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0005665	RNA polymerase II, core complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0001055	RNA polymerase II activity
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity