Cucsat.G2496 (gene) Cucumber (B10) v3

Overview


Name	Cucsat.G2496
Type	gene
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	60S ribosomal protein L11
Location	ctg1002: 5924830 .. 5929706 (+)
RNA-Seq Expression	Cucsat.G2496
Synteny	Cucsat.G2496

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCTCACATCTTTACCCGCCGGAGCTTCGTTTTCTGCTCTCAACTTCGATACGGCAAAAATGGTATCTCTCCCCCATTCGTTTGATTTCAATTTGGCTTCAAGTTTAGGCGTCGCATACATTTTTACGTATTTAGATTTCTAATTGTGTTTAACTCATTGCTTTTCAGGCTTCAGAGAAGAAGCTGTCTAATCCTATGCGCGATATCAAAGTCCAAAAACTTGTCCTCAACATCTCCGTTGGCGAAAGTGGCGATCGTCTTACCAGAGCCGCTAAGGTTTCTTTCCCGTCTCTGACGTCTCCCTTTGCTTCTCTTCTGTTTAGTTTCTGTATAATCTTAACAAGGATTGTGGTATTTCATTTTGTTTACTTTAGGTGCTCGAACAACTCAGTGGCCAATCTCCAGTCTTCTCAAAGGGTATAATTCCCTTTACCTTTTAGTCACTTTTATCGATTCCTGTTTCTTTCTTCTTCATTCATTATCTGAATTTTGTGGTTGGAACAGCTCGGTACACCGTTCGGTCGTTTGGGATCCGTCGTAACGAAAAGATTGCGTGTTATGTGACCGTCAGGGGCGACAAAGCAATGCAGCTTCTTGAGAGTGGTTTGAAGGTTAAGGAGTATGAGCTTTTGCGCCGTAACTTCAGTGATACTGGCTGCTTTGGTTTTGGAATTCAGGAGCACATTGATCTTGGAATTAAGTGAGTTACCATTCTGTTATTGTTTATATTCCCCTGTGACGGTTTTTTTTTTTGTTGATGATGCTGATAATTATTATGGACTTTATGCGAATCTGGATTTCGGCTTATGATATGTTAAATCCTCATGAAATACTGAAGTGAAGAGGGACAATTGGATAATTTTAATTTCGTTAGGACTATATTAAACTCGTGTCGTCAATTGTCTATAACCATACTTTGCATTTAGGATTACATTTGCTTCGCTATCTGACCAGTATCAAGGTTCAGAACATGGGTTTCTTGAACTGCTTTGTGCACCAGAATTATTGGTATATACCCAATACGAGTAATAGACCTGTCACCTGACCTAAACCGGGGTTAATACACGTCAAAACGATCTGTTCACTGATATAATGAAGCATAGCTTTGTGTATGGTTGGAGATTCAGCCATCATTTTGTTTGATGAATAAGAGTTCTATATTAACTCTTGCATGCTTAATCTTATCTGAAAAAATTTGTGCGGAAATGGTATCTGTTTATTATATGCTTAACCTTGGTTGCATTCAAACTAAATGTAAACATATTTGATGCTGTTGAAAAACCTTGTTCCAAAGCATTGCTTATAGTGGTATCATCTTAACTTATTTGTAAGATCACGTCCAACATATATAATATGGTGTCTTATTTATATCGAACATGAACTGAAACCAAGGAAAATATTCATACACATGCTCAACTTTGGTTTCTTGAGGCTATAACTTGTGTGAGTTCTTTGCTGATTTACATACATTATCTTCAAATAACTGTCTAGTATACAAGTTGCATCTCCATGCCACATTTTCGTATCTCTGAGTAATCTTCTTGTACAAGAAGAGTTCTGTAGATGCAAGTGCTGGCAGCTTTGAGTTATTTTGAAATCTTATCATAAACATGGTTTATACTCACAAGTACTTGATCACTTCTTATTCTAAATTTCCTTTGTTCTATTTTTTCTACAGATATGATCCTTCTACTGGTATTTACGGCATGGATTTCTACGTTGTTCTGGAAAGACCAGGTTACCGTGTAGGTCGGCGCCGTAGATGCAAATCAACTGTTGGAATTCAGCATAGAGTCACTAAAGAGGATGCCATGAAGTGGTTCCAAGTCAAATATGAAGGAGTTATCCTCAACAAGTCTCAAAATATATCCTAGAAAAGGTTCTCTACTATCTTTGATAGCATGTTCAAATTTTGGCAATATGTTTTCTTGTTTTAAGATTTTTGTCTATCAGAACTTCAATTTCTTGTTTAAGGAGCGTTTTAGCTTTTCTTATTTTATAGTGTGCTTCGTTTCAACTCTTTTGACCGCATTGAAAGTTAATATTCACTTTTTGTTAGCTGATACAATGTCAGTCAGTTGTTTTGTTATGAAACCATACTACACAAGCAAATATTCCAAGACCTAGTGGGATACTTGTGTATATAAAGCATTTCGTTCTTTAAAAGAAAAGGAATCCTCGTCTCCTCACTCAAAGATGTTTTTGTTATACTAAACTTCCCTACTTTTTTTTCCTCCCTTGTGTGTGAGGACAAAGATAGGCCATCAATTTTAT

Coding sequence (CDS)

CTCACATCTTTACCCGCCGGAGCTTCGTTTTCTGCTCTCAACTTCGATACGGCAAAAATGGCTTCAGAGAAGAAGCTGTCTAATCCTATGCGCGATATCAAAGTCCAAAAACTTGTCCTCAACATCTCCGTTGGCGAAAGTGGCGATCGTCTTACCAGAGCCGCTAAGGTGCTCGAACAACTCAGTGGCCAATCTCCAGTCTTCTCAAAGGCTCGGTACACCGTTCGGTCGTTTGGGATCCGTCGTAACGAAAAGATTGCGTGTTATGTGACCGTCAGGGGCGACAAAGCAATGCAGCTTCTTGAGAGTGGTTTGAAGGTTAAGGAGTATGAGCTTTTGCGCCGTAACTTCAGTGATACTGGCTGCTTTGGTTTTGGAATTCAGGAGCACATTGATCTTGGAATTAAATATGATCCTTCTACTGGTATTTACGGCATGGATTTCTACGTTGTTCTGGAAAGACCAGGTTACCGTGTAGGTCGGCGCCGTAGATGCAAATCAACTGTTGGAATTCAGCATAGAGTCACTAAAGAGGATGCCATGAAGTGGTTCCAAGTCAAATATGAAGGAGTTATCCTCAACAAGTCTCAAAATATATCCTAG

Protein sequence

LTSLPAGASFSALNFDTAKMASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLERPGYRVGRRRRCKSTVGIQHRVTKEDAMKWFQVKYEGVILNKSQNIS

Homology

[Close]

BLAST of Cucsat.G2496 vs. ExPASy Swiss-Prot
Match: P42795 (60S ribosomal protein L11-1 OS=Arabidopsis thaliana OX=3702 GN=RPL11A PE=2 SV=2)

HSP 1 Score: 352.4 bits (903), Expect = 3.3e-96
Identity = 173/181 (95.58%), Postives = 179/181 (98.90%), Query Frame = 0


Query: 20  MASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFG 79
           MASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRA+KVLEQLSGQ+PVFSKARYTVRSFG
Sbjct: 1   MASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFG 60

Query: 80  IRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 139
           IRRNEKIACYVTVRG+KAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP
Sbjct: 61  IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 120

Query: 140 STGIYGMDFYVVLERPGYRVGRRRRCKSTVGIQHRVTKEDAMKWFQVKYEGVILNKSQNI 199
           STGIYGMDFYVVLERPGYRV RRRRCK+ VGIQHRVTK+DAMKWFQVKYEGVILNKSQNI
Sbjct: 121 STGIYGMDFYVVLERPGYRVARRRRCKARVGIQHRVTKDDAMKWFQVKYEGVILNKSQNI 180

Query: 200 S 201
           +
Sbjct: 181 T 181

[Close]

BLAST of Cucsat.G2496 vs. ExPASy Swiss-Prot
Match: P42794 (60S ribosomal protein L11-2 OS=Arabidopsis thaliana OX=3702 GN=RPL11B PE=2 SV=2)

HSP 1 Score: 352.4 bits (903), Expect = 3.3e-96
Identity = 173/181 (95.58%), Postives = 179/181 (98.90%), Query Frame = 0


Query: 20  MASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFG 79
           MASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRA+KVLEQLSGQ+PVFSKARYTVRSFG
Sbjct: 1   MASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFG 60

Query: 80  IRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 139
           IRRNEKIACYVTVRG+KAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP
Sbjct: 61  IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 120

Query: 140 STGIYGMDFYVVLERPGYRVGRRRRCKSTVGIQHRVTKEDAMKWFQVKYEGVILNKSQNI 199
           STGIYGMDFYVVLERPGYRV RRRRCK+ VGIQHRVTK+DAMKWFQVKYEGVILNKSQNI
Sbjct: 121 STGIYGMDFYVVLERPGYRVARRRRCKTRVGIQHRVTKDDAMKWFQVKYEGVILNKSQNI 180

Query: 200 S 201
           +
Sbjct: 181 T 181

[Close]

BLAST of Cucsat.G2496 vs. ExPASy Swiss-Prot
Match: P46287 (60S ribosomal protein L11 OS=Medicago sativa OX=3879 GN=RPL11 PE=2 SV=1)

HSP 1 Score: 350.9 bits (899), Expect = 9.5e-96
Identity = 173/180 (96.11%), Postives = 178/180 (98.89%), Query Frame = 0


Query: 20  MASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFG 79
           MASEKKLSNPMR+IKVQKLVLNISVGESGDRLTRAAKVLEQLSGQ+PVFSKARYTVRSFG
Sbjct: 1   MASEKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFG 60

Query: 80  IRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 139
           IRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP
Sbjct: 61  IRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 120

Query: 140 STGIYGMDFYVVLERPGYRVGRRRRCKSTVGIQHRVTKEDAMKWFQVKYEGVILNKSQNI 199
           STGIYGMDF+VVLERPGYRVGRRRRCK+ VGIQHRVTK+DAMKWFQVKYEGVILNKSQ I
Sbjct: 121 STGIYGMDFFVVLERPGYRVGRRRRCKARVGIQHRVTKDDAMKWFQVKYEGVILNKSQAI 180

[Close]

BLAST of Cucsat.G2496 vs. ExPASy Swiss-Prot
Match: A2YDY2 (60S ribosomal protein L11 OS=Oryza sativa subsp. indica OX=39946 GN=RPL11 PE=2 SV=2)

HSP 1 Score: 342.0 bits (876), Expect = 4.4e-93
Identity = 169/178 (94.94%), Postives = 174/178 (97.75%), Query Frame = 0


Query: 20  MASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFG 79
           MASEKK SNPMR+IKVQKLVLNISVGESGDRLTRA+KVLEQLSGQSPVFSKARYTVRSFG
Sbjct: 1   MASEKKQSNPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQSPVFSKARYTVRSFG 60

Query: 80  IRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 139
           IRRNEKIACYVTVRG+KAMQLLESGLKVKEYELLRRNFS+TGCFGFGIQEHIDLGIKYDP
Sbjct: 61  IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSETGCFGFGIQEHIDLGIKYDP 120

Query: 140 STGIYGMDFYVVLERPGYRVGRRRRCKSTVGIQHRVTKEDAMKWFQVKYEGVILNKSQ 198
           STGIYGMDFYVVLER GYRV RRRRCKS VGIQHRVTKEDAMKWFQVKYEGVILNK+Q
Sbjct: 121 STGIYGMDFYVVLERAGYRVARRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKAQ 178

[Close]

BLAST of Cucsat.G2496 vs. ExPASy Swiss-Prot
Match: Q0DK10 (60S ribosomal protein L11 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL11 PE=2 SV=1)

HSP 1 Score: 342.0 bits (876), Expect = 4.4e-93
Identity = 169/178 (94.94%), Postives = 174/178 (97.75%), Query Frame = 0


Query: 20  MASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFG 79
           MASEKK SNPMR+IKVQKLVLNISVGESGDRLTRA+KVLEQLSGQSPVFSKARYTVRSFG
Sbjct: 1   MASEKKQSNPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQSPVFSKARYTVRSFG 60

Query: 80  IRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 139
           IRRNEKIACYVTVRG+KAMQLLESGLKVKEYELLRRNFS+TGCFGFGIQEHIDLGIKYDP
Sbjct: 61  IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSETGCFGFGIQEHIDLGIKYDP 120

Query: 140 STGIYGMDFYVVLERPGYRVGRRRRCKSTVGIQHRVTKEDAMKWFQVKYEGVILNKSQ 198
           STGIYGMDFYVVLER GYRV RRRRCKS VGIQHRVTKEDAMKWFQVKYEGVILNK+Q
Sbjct: 121 STGIYGMDFYVVLERAGYRVARRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKAQ 178

[Close]

BLAST of Cucsat.G2496 vs. NCBI nr
Match: KAG6594538.1 (60S ribosomal protein L11-2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 381 bits (979), Expect = 2.28e-129
Identity = 190/193 (98.45%), Postives = 193/193 (100.00%), Query Frame = 0


Query: 8   ASFSALNFDTAKMASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPV 67
           ASF+ALNFD+AKMASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRA+KVLEQLSGQSPV
Sbjct: 261 ASFTALNFDSAKMASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQSPV 320

Query: 68  FSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGI 127
           FSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGI
Sbjct: 321 FSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGI 380

Query: 128 QEHIDLGIKYDPSTGIYGMDFYVVLERPGYRVGRRRRCKSTVGIQHRVTKEDAMKWFQVK 187
           QEHIDLGIKYDPSTGIYGMDFYVVLERPGYRVGRRRRCKSTVGIQHRVTKEDAMKWFQVK
Sbjct: 381 QEHIDLGIKYDPSTGIYGMDFYVVLERPGYRVGRRRRCKSTVGIQHRVTKEDAMKWFQVK 440

Query: 188 YEGVILNKSQNIS 200
           YEGVILNKSQNIS
Sbjct: 441 YEGVILNKSQNIS 453

[Close]

BLAST of Cucsat.G2496 vs. NCBI nr
Match: XP_004134655.1 (60S ribosomal protein L11-1 [Cucumis sativus] >XP_008439725.1 PREDICTED: 60S ribosomal protein L11-1-like [Cucumis melo] >XP_038881245.1 60S ribosomal protein L11-1-like [Benincasa hispida] >XP_038881246.1 60S ribosomal protein L11-1-like [Benincasa hispida] >KGN49316.1 hypothetical protein Csa_003237 [Cucumis sativus])

HSP 1 Score: 363 bits (933), Expect = 2.01e-126
Identity = 181/181 (100.00%), Postives = 181/181 (100.00%), Query Frame = 0


Query: 20  MASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFG 79
           MASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFG
Sbjct: 1   MASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFG 60

Query: 80  IRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 139
           IRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP
Sbjct: 61  IRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 120

Query: 140 STGIYGMDFYVVLERPGYRVGRRRRCKSTVGIQHRVTKEDAMKWFQVKYEGVILNKSQNI 199
           STGIYGMDFYVVLERPGYRVGRRRRCKSTVGIQHRVTKEDAMKWFQVKYEGVILNKSQNI
Sbjct: 121 STGIYGMDFYVVLERPGYRVGRRRRCKSTVGIQHRVTKEDAMKWFQVKYEGVILNKSQNI 180

[Close]

BLAST of Cucsat.G2496 vs. NCBI nr
Match: KAA0052611.1 (Ribosomal protein L5 [Cucumis melo var. makuwa])

HSP 1 Score: 365 bits (938), Expect = 2.53e-126
Identity = 183/187 (97.86%), Postives = 184/187 (98.40%), Query Frame = 0


Query: 14  NFDTAKMASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARY 73
           NF  A +ASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARY
Sbjct: 51  NFLMACLASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARY 110

Query: 74  TVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL 133
           TVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL
Sbjct: 111 TVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL 170

Query: 134 GIKYDPSTGIYGMDFYVVLERPGYRVGRRRRCKSTVGIQHRVTKEDAMKWFQVKYEGVIL 193
           GIKYDPSTGIYGMDFYVVLERPGYRVGRRRRCKSTVGIQHRVTKEDAMKWFQVKYEGVIL
Sbjct: 171 GIKYDPSTGIYGMDFYVVLERPGYRVGRRRRCKSTVGIQHRVTKEDAMKWFQVKYEGVIL 230

Query: 194 NKSQNIS 200
           NKSQNIS
Sbjct: 231 NKSQNIS 237

[Close]

BLAST of Cucsat.G2496 vs. NCBI nr
Match: XP_022926626.1 (60S ribosomal protein L11-1-like [Cucurbita moschata] >XP_023003612.1 60S ribosomal protein L11-1-like [Cucurbita maxima] >XP_023518618.1 60S ribosomal protein L11-1 [Cucurbita pepo subsp. pepo] >XP_023518619.1 60S ribosomal protein L11-1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 362 bits (930), Expect = 5.77e-126
Identity = 180/181 (99.45%), Postives = 181/181 (100.00%), Query Frame = 0


Query: 20  MASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFG 79
           MASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRA+KVLEQLSGQSPVFSKARYTVRSFG
Sbjct: 1   MASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQSPVFSKARYTVRSFG 60

Query: 80  IRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 139
           IRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP
Sbjct: 61  IRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 120

Query: 140 STGIYGMDFYVVLERPGYRVGRRRRCKSTVGIQHRVTKEDAMKWFQVKYEGVILNKSQNI 199
           STGIYGMDFYVVLERPGYRVGRRRRCKSTVGIQHRVTKEDAMKWFQVKYEGVILNKSQNI
Sbjct: 121 STGIYGMDFYVVLERPGYRVGRRRRCKSTVGIQHRVTKEDAMKWFQVKYEGVILNKSQNI 180

[Close]

BLAST of Cucsat.G2496 vs. NCBI nr
Match: XP_022142341.1 (60S ribosomal protein L11-1-like [Momordica charantia] >XP_023544522.1 60S ribosomal protein L11-1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 362 bits (929), Expect = 8.19e-126
Identity = 180/181 (99.45%), Postives = 181/181 (100.00%), Query Frame = 0


Query: 20  MASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFG 79
           MASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFG
Sbjct: 1   MASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFG 60

Query: 80  IRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 139
           IRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP
Sbjct: 61  IRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 120

Query: 140 STGIYGMDFYVVLERPGYRVGRRRRCKSTVGIQHRVTKEDAMKWFQVKYEGVILNKSQNI 199
           STGIYGMDFYVVLERPGYRVGRRRRCKS+VGIQHRVTKEDAMKWFQVKYEGVILNKSQNI
Sbjct: 121 STGIYGMDFYVVLERPGYRVGRRRRCKSSVGIQHRVTKEDAMKWFQVKYEGVILNKSQNI 180

[Close]

BLAST of Cucsat.G2496 vs. ExPASy TrEMBL
Match: A0A0A0KNL5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G519680 PE=3 SV=1)

HSP 1 Score: 363 bits (933), Expect = 9.74e-127
Identity = 181/181 (100.00%), Postives = 181/181 (100.00%), Query Frame = 0


Query: 20  MASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFG 79
           MASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFG
Sbjct: 1   MASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFG 60

Query: 80  IRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 139
           IRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP
Sbjct: 61  IRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 120

Query: 140 STGIYGMDFYVVLERPGYRVGRRRRCKSTVGIQHRVTKEDAMKWFQVKYEGVILNKSQNI 199
           STGIYGMDFYVVLERPGYRVGRRRRCKSTVGIQHRVTKEDAMKWFQVKYEGVILNKSQNI
Sbjct: 121 STGIYGMDFYVVLERPGYRVGRRRRCKSTVGIQHRVTKEDAMKWFQVKYEGVILNKSQNI 180

[Close]

BLAST of Cucsat.G2496 vs. ExPASy TrEMBL
Match: A0A1S3AZF9 (60S ribosomal protein L11-1-like OS=Cucumis melo OX=3656 GN=LOC103484439 PE=3 SV=1)

HSP 1 Score: 363 bits (933), Expect = 9.74e-127
Identity = 181/181 (100.00%), Postives = 181/181 (100.00%), Query Frame = 0


Query: 20  MASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFG 79
           MASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFG
Sbjct: 1   MASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFG 60

Query: 80  IRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 139
           IRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP
Sbjct: 61  IRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 120

Query: 140 STGIYGMDFYVVLERPGYRVGRRRRCKSTVGIQHRVTKEDAMKWFQVKYEGVILNKSQNI 199
           STGIYGMDFYVVLERPGYRVGRRRRCKSTVGIQHRVTKEDAMKWFQVKYEGVILNKSQNI
Sbjct: 121 STGIYGMDFYVVLERPGYRVGRRRRCKSTVGIQHRVTKEDAMKWFQVKYEGVILNKSQNI 180

[Close]

BLAST of Cucsat.G2496 vs. ExPASy TrEMBL
Match: A0A5A7UGH5 (Ribosomal protein L5 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold120G002190 PE=3 SV=1)

HSP 1 Score: 365 bits (938), Expect = 1.22e-126
Identity = 183/187 (97.86%), Postives = 184/187 (98.40%), Query Frame = 0


Query: 14  NFDTAKMASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARY 73
           NF  A +ASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARY
Sbjct: 51  NFLMACLASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARY 110

Query: 74  TVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL 133
           TVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL
Sbjct: 111 TVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL 170

Query: 134 GIKYDPSTGIYGMDFYVVLERPGYRVGRRRRCKSTVGIQHRVTKEDAMKWFQVKYEGVIL 193
           GIKYDPSTGIYGMDFYVVLERPGYRVGRRRRCKSTVGIQHRVTKEDAMKWFQVKYEGVIL
Sbjct: 171 GIKYDPSTGIYGMDFYVVLERPGYRVGRRRRCKSTVGIQHRVTKEDAMKWFQVKYEGVIL 230

Query: 194 NKSQNIS 200
           NKSQNIS
Sbjct: 231 NKSQNIS 237

[Close]

BLAST of Cucsat.G2496 vs. ExPASy TrEMBL
Match: A0A6J1KN27 (60S ribosomal protein L11-1-like OS=Cucurbita maxima OX=3661 GN=LOC111497161 PE=3 SV=1)

HSP 1 Score: 362 bits (930), Expect = 2.79e-126
Identity = 180/181 (99.45%), Postives = 181/181 (100.00%), Query Frame = 0


Query: 20  MASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFG 79
           MASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRA+KVLEQLSGQSPVFSKARYTVRSFG
Sbjct: 1   MASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQSPVFSKARYTVRSFG 60

Query: 80  IRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 139
           IRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP
Sbjct: 61  IRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 120

Query: 140 STGIYGMDFYVVLERPGYRVGRRRRCKSTVGIQHRVTKEDAMKWFQVKYEGVILNKSQNI 199
           STGIYGMDFYVVLERPGYRVGRRRRCKSTVGIQHRVTKEDAMKWFQVKYEGVILNKSQNI
Sbjct: 121 STGIYGMDFYVVLERPGYRVGRRRRCKSTVGIQHRVTKEDAMKWFQVKYEGVILNKSQNI 180

[Close]

BLAST of Cucsat.G2496 vs. ExPASy TrEMBL
Match: A0A6J1EFE9 (60S ribosomal protein L11-1-like OS=Cucurbita moschata OX=3662 GN=LOC111433702 PE=3 SV=1)

HSP 1 Score: 362 bits (930), Expect = 2.79e-126
Identity = 180/181 (99.45%), Postives = 181/181 (100.00%), Query Frame = 0


Query: 20  MASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFG 79
           MASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRA+KVLEQLSGQSPVFSKARYTVRSFG
Sbjct: 1   MASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQSPVFSKARYTVRSFG 60

Query: 80  IRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 139
           IRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP
Sbjct: 61  IRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 120

Query: 140 STGIYGMDFYVVLERPGYRVGRRRRCKSTVGIQHRVTKEDAMKWFQVKYEGVILNKSQNI 199
           STGIYGMDFYVVLERPGYRVGRRRRCKSTVGIQHRVTKEDAMKWFQVKYEGVILNKSQNI
Sbjct: 121 STGIYGMDFYVVLERPGYRVGRRRRCKSTVGIQHRVTKEDAMKWFQVKYEGVILNKSQNI 180

[Close]

BLAST of Cucsat.G2496 vs. TAIR 10
Match: AT2G42740.1 (ribosomal protein large subunit 16A )

HSP 1 Score: 352.4 bits (903), Expect = 2.3e-97
Identity = 173/181 (95.58%), Postives = 179/181 (98.90%), Query Frame = 0


Query: 20  MASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFG 79
           MASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRA+KVLEQLSGQ+PVFSKARYTVRSFG
Sbjct: 1   MASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFG 60

Query: 80  IRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 139
           IRRNEKIACYVTVRG+KAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP
Sbjct: 61  IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 120

Query: 140 STGIYGMDFYVVLERPGYRVGRRRRCKSTVGIQHRVTKEDAMKWFQVKYEGVILNKSQNI 199
           STGIYGMDFYVVLERPGYRV RRRRCK+ VGIQHRVTK+DAMKWFQVKYEGVILNKSQNI
Sbjct: 121 STGIYGMDFYVVLERPGYRVARRRRCKARVGIQHRVTKDDAMKWFQVKYEGVILNKSQNI 180

Query: 200 S 201
           +
Sbjct: 181 T 181

[Close]

BLAST of Cucsat.G2496 vs. TAIR 10
Match: AT3G58700.1 (Ribosomal L5P family protein )

HSP 1 Score: 352.4 bits (903), Expect = 2.3e-97
Identity = 173/181 (95.58%), Postives = 179/181 (98.90%), Query Frame = 0


Query: 20  MASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFG 79
           MASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRA+KVLEQLSGQ+PVFSKARYTVRSFG
Sbjct: 1   MASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFG 60

Query: 80  IRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 139
           IRRNEKIACYVTVRG+KAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP
Sbjct: 61  IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 120

Query: 140 STGIYGMDFYVVLERPGYRVGRRRRCKSTVGIQHRVTKEDAMKWFQVKYEGVILNKSQNI 199
           STGIYGMDFYVVLERPGYRV RRRRCK+ VGIQHRVTK+DAMKWFQVKYEGVILNKSQNI
Sbjct: 121 STGIYGMDFYVVLERPGYRVARRRRCKTRVGIQHRVTKDDAMKWFQVKYEGVILNKSQNI 180

Query: 200 S 201
           +
Sbjct: 181 T 181

[Close]

BLAST of Cucsat.G2496 vs. TAIR 10
Match: AT4G18730.1 (ribosomal protein L16B )

HSP 1 Score: 352.4 bits (903), Expect = 2.3e-97
Identity = 173/181 (95.58%), Postives = 179/181 (98.90%), Query Frame = 0


Query: 20  MASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFG 79
           MASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRA+KVLEQLSGQ+PVFSKARYTVRSFG
Sbjct: 1   MASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFG 60

Query: 80  IRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 139
           IRRNEKIACYVTVRG+KAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP
Sbjct: 61  IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 120

Query: 140 STGIYGMDFYVVLERPGYRVGRRRRCKSTVGIQHRVTKEDAMKWFQVKYEGVILNKSQNI 199
           STGIYGMDFYVVLERPGYRV RRRRCK+ VGIQHRVTK+DAMKWFQVKYEGVILNKSQNI
Sbjct: 121 STGIYGMDFYVVLERPGYRVARRRRCKTRVGIQHRVTKDDAMKWFQVKYEGVILNKSQNI 180

Query: 200 S 201
           +
Sbjct: 181 T 181

[Close]

BLAST of Cucsat.G2496 vs. TAIR 10
Match: AT5G45775.2 (Ribosomal L5P family protein )

HSP 1 Score: 352.4 bits (903), Expect = 2.3e-97
Identity = 173/181 (95.58%), Postives = 179/181 (98.90%), Query Frame = 0


Query: 20  MASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFG 79
           MASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRA+KVLEQLSGQ+PVFSKARYTVRSFG
Sbjct: 1   MASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFG 60

Query: 80  IRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 139
           IRRNEKIACYVTVRG+KAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP
Sbjct: 61  IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 120

Query: 140 STGIYGMDFYVVLERPGYRVGRRRRCKSTVGIQHRVTKEDAMKWFQVKYEGVILNKSQNI 199
           STGIYGMDFYVVLERPGYRV RRRRCK+ VGIQHRVTK+DAMKWFQVKYEGVILNKSQNI
Sbjct: 121 STGIYGMDFYVVLERPGYRVARRRRCKTRVGIQHRVTKDDAMKWFQVKYEGVILNKSQNI 180

Query: 200 S 201
           +
Sbjct: 181 T 181

[Close]

BLAST of Cucsat.G2496 vs. TAIR 10
Match: AT5G45775.1 (Ribosomal L5P family protein )

HSP 1 Score: 334.3 bits (856), Expect = 6.5e-92
Identity = 163/171 (95.32%), Postives = 169/171 (98.83%), Query Frame = 0


Query: 30  MRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFGIRRNEKIACY 89
           MRDIKVQKLVLNISVGESGDRLTRA+KVLEQLSGQ+PVFSKARYTVRSFGIRRNEKIACY
Sbjct: 1   MRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACY 60

Query: 90  VTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFY 149
           VTVRG+KAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFY
Sbjct: 61  VTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFY 120

Query: 150 VVLERPGYRVGRRRRCKSTVGIQHRVTKEDAMKWFQVKYEGVILNKSQNIS 201
           VVLERPGYRV RRRRCK+ VGIQHRVTK+DAMKWFQVKYEGVILNKSQNI+
Sbjct: 121 VVLERPGYRVARRRRCKTRVGIQHRVTKDDAMKWFQVKYEGVILNKSQNIT 171

The following BLAST results are available for this feature:

BLAST of Cucsat.G2496 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P42795	3.3e-96	95.58	60S ribosomal protein L11-1 OS=Arabidopsis thaliana OX=3702 GN=RPL11A PE=2 SV=2	[more]
P42794	3.3e-96	95.58	60S ribosomal protein L11-2 OS=Arabidopsis thaliana OX=3702 GN=RPL11B PE=2 SV=2	[more]
P46287	9.5e-96	96.11	60S ribosomal protein L11 OS=Medicago sativa OX=3879 GN=RPL11 PE=2 SV=1	[more]
A2YDY2	4.4e-93	94.94	60S ribosomal protein L11 OS=Oryza sativa subsp. indica OX=39946 GN=RPL11 PE=2 S...	[more]
Q0DK10	4.4e-93	94.94	60S ribosomal protein L11 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL11 PE=2...	[more]

BLAST of Cucsat.G2496 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6594538.1	2.28e-129	98.45	60S ribosomal protein L11-2, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_004134655.1	2.01e-126	100.00	60S ribosomal protein L11-1 [Cucumis sativus] >XP_008439725.1 PREDICTED: 60S rib...	[more]
KAA0052611.1	2.53e-126	97.86	Ribosomal protein L5 [Cucumis melo var. makuwa]	[more]
XP_022926626.1	5.77e-126	99.45	60S ribosomal protein L11-1-like [Cucurbita moschata] >XP_023003612.1 60S riboso...	[more]
XP_022142341.1	8.19e-126	99.45	60S ribosomal protein L11-1-like [Momordica charantia] >XP_023544522.1 60S ribos...	[more]

BLAST of Cucsat.G2496 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KNL5	9.74e-127	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G519680 PE=3 SV=1	[more]
A0A1S3AZF9	9.74e-127	100.00	60S ribosomal protein L11-1-like OS=Cucumis melo OX=3656 GN=LOC103484439 PE=3 SV...	[more]
A0A5A7UGH5	1.22e-126	97.86	Ribosomal protein L5 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold120...	[more]
A0A6J1KN27	2.79e-126	99.45	60S ribosomal protein L11-1-like OS=Cucurbita maxima OX=3661 GN=LOC111497161 PE=...	[more]
A0A6J1EFE9	2.79e-126	99.45	60S ribosomal protein L11-1-like OS=Cucurbita moschata OX=3662 GN=LOC111433702 P...	[more]

BLAST of Cucsat.G2496 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G42740.1	2.3e-97	95.58	ribosomal protein large subunit 16A	[more]
AT3G58700.1	2.3e-97	95.58	Ribosomal L5P family protein	[more]
AT4G18730.1	2.3e-97	95.58	ribosomal protein L16B	[more]
AT5G45775.2	2.3e-97	95.58	Ribosomal L5P family protein	[more]
AT5G45775.1	6.5e-92	95.32	Ribosomal L5P family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR031310	Ribosomal protein L5, N-terminal	PFAM	PF00281	Ribosomal_L5	coord: 1..52 e-value: 3.5E-19 score: 68.8
IPR022803	Ribosomal protein L5 domain superfamily	GENE3D	3.30.1440.10		coord: 1..167 e-value: 4.8E-70 score: 236.7
IPR022803	Ribosomal protein L5 domain superfamily	SUPERFAMILY	55282	RL5-like	coord: 1..163
IPR002132	Ribosomal protein L5	PIRSF	PIRSF002161	RPL5p_RPL5a_RPL11e_RPL5o	coord: 1..162 e-value: 3.1E-40 score: 135.6
IPR002132	Ribosomal protein L5	PANTHER	PTHR11994	60S RIBOSOMAL PROTEIN L11-RELATED	coord: 1..170
IPR031309	Ribosomal protein L5, C-terminal	PFAM	PF00673	Ribosomal_L5_C	coord: 56..154 e-value: 6.7E-21 score: 74.3
None	No IPR available	PANTHER	PTHR11994:SF31	60S RIBOSOMAL PROTEIN L11-1	coord: 1..170
IPR020929	Ribosomal protein L5, conserved site	PROSITE	PS00358	RIBOSOMAL_L5	coord: 29..45

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsat.G2496.T1	Cucsat.G2496.T1	mRNA
Cucsat.G2496.T4	Cucsat.G2496.T4	mRNA
Cucsat.G2496.T6	Cucsat.G2496.T6	mRNA
Cucsat.G2496.T2	Cucsat.G2496.T2	mRNA
Cucsat.G2496.T5	Cucsat.G2496.T5	mRNA
Cucsat.G2496.T3	Cucsat.G2496.T3	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome