Cucsat.G249 (gene) Cucumber (B10) v3

Overview
NameCucsat.G249
Typegene
OrganismCucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
DescriptionUnknown protein
Locationctg1: 5629888 .. 5632827 (-)
RNA-Seq ExpressionCucsat.G249
SyntenyCucsat.G249
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TCCTTCTCTTCCTTTTCCACAAATTTTCCCCTTCATTCCCTTCCCCACAATTTTTCCATTCCTTCCAAAGTCAGTGGCTTTCACCACCGTCGCTGCACCTCTGTCGCATTGCCCGCCGCCGACGCTGACTCCAGCCGCAAGCTCCGCCCAGATCTGACTCCGCTGCCGCTGCCGCCGCTGATTCCAGCCTCCCTCGCGCCGCCGCACACTACTGCGCTGCAGGTTCCAACGCCAGCCAAATCTTCAACCGTACGTTCTACTCTCGGTGAGTTCATCTATTTTTGTTTATATTAGTAATTTGGGTTGTGTTTAGAGTGATAGAAACATATATTTTCTACACCCGTCATAAAAAATATATTAAGATTTTTGAATTGTAAGCTTCTTTAGGTTAGAATTCAAGATTTTTTTTTAAGAAAAAACATTCCAATTAGACATGGTTTATATGTGTTCTAATTGTTTTTTACATTACCTTGAGGCTAAATTTGTGCAGTTGAAAAGAACTTTGTCATTGTGTATTTGTAGGAGTCCGATTGTTGTGTTTTATGCTTTTACAACCATTGAAGTCTAGTTTAGTCTTGAAAGAAATTTAGTTGGATGTAGGTGGGAGGGGTTCGCTTTGTACTTTATATGCATTTTTGTTGCTACTTTCTAGATTTAAAGGGCAGTTTGATGGAACTTAGAAAATGTTCATAGCTTTTGGGAGGGGTGTTTATGTGTTCTAATTGTTTTTTCTTCTCTCTAATTTTTCCCTCAAAATGTGAGATTTTATTTCTTGATTTCAATCTCTATTTGTTGATCAATTTAATTCATATATGTTTTTGTAGTATAGCCTTTTAATGGGTTTGTCAAGGTATTAGTTTGAATTGGAACCTTTAAATCCGCATCCATTCTCTTTTCTCTGACACGAAATTAATGCAATGGTTGTGGTTTCTGAAGATGATTATGGGTCTTTTGTAAACTATTCTTGTTGCAGGTTGCTGGGAATTTCATAGCTGAATATGCATCCTCCTCTAACTTTGCACAAGCACCCGATGTGTGCTGAAGTGAGTTCCAAACTATACCGTCTTAATCTATATATATAGTTGAATTTCTTTAGATGGTTGTCTTGATCTTCATTTCATTTCTGAACAACCTTTTGTTTATGAATCAATTCTGTTATATTGCAAGAAAGTGGGATAAAGAAATCATATGTTGAACTTTGATGACCAGTTTTTACCTCTTTAAATGTTGTATTCAAGTAAACTCTTCTTCAATCAAGCAAAGAACTATTGGCAATCTAATTTAGTTTTATACTAATGGAAATCAAATGATGGGTTGCTTACAGTCATACATGAAAACGGCAACATGTCATTTTTAAAAAAAAATCAAGGACACAACACGGAAATCACGCATTTGTTAAAGTATACACTTTAAAAAATATATTATTTTTATACCAAAAACAATTCAAAAGAAAACGGATTGATGTATTTATATGTGTAGCAAACTTAGTTTTACGTATTCACACTCAAAATTTATTATTATTGTCATAAATTTGTCTTTTTAGTCTGTTGATGATGACATGTTTTTCCAAAGGTTGCTTCTCCCAAATATATTTATGCAGCTGCCTTGCTTAAAGCTCTCGCCTTTTTCTTAGGAGACTTGAGCGCTTAACGCTGCCATCTTGGAGTATCTGAAACAAAAAAAAAATGTCTTTTTAGTCTATACAACAAGTGTTTTATGTATGTCTAAACTCATATTTGTTATACCAATAAGTGTTCGATACATGTCTAACAAGGGTTTGAATTTTGATAAGTATCGGACACAGACACAATAGCCAAATTAGGCTACAAGAAGTTGAACTATGGTCCATAGGTGGTGCAGTACATTGAACAACTGCTATGGAATTGCTGTAGGAGTTAAAATTTGTCTACTAACTAGCAAGTGAGAAGCATATTGCTTTCCTACCAATCAAAGTGAAGAGAATTGCTATAGATTTCCTAGGTGTTCATGAGTGAAATAAGTTCAAATTTTATAGTTGTGCCACCTATTTGAGTTCTAGTTTCTTAACAACGAAATGTTGTAAGCTAGCCTAGGCACTTGCTTATTAGGGAAAGAAGAGGTAAGAGTATCTTTTCGTATTGTACTGAAGCCGAAACTTCCCTTTTATTATGCAGTTTTGTCAGTGGAACCCCTTTTTAAAAGCTAATTTTTTCCTTTCCCTTCTCTTCCATTATTTACAGATTATTGAGCAATTTCAGAAGTGTCATATAGACCATCCTGTTGGAAAATTTTTTGGTGAATGCACAGATCTCAAAATTAAGCTTGATCGTTGTTTCAGACAGGAAGTGAGTTTTGTGCTTCCACATTCAAGCTTTCCTTGCTTTGTTTTCAACTTGACAAGTTCCTTTTTTGTCACCCATCTCAAATGGCACTTTCTATTCTTCGTTTGCAGAAAGCTTTGAAACGAAAGGCAAACTTTGAACAGAGTAAAAAAATGAAGGAAAGGCTAGACGCTTTAAGAAAGGAAAATGCTTTGTGAAGTAGCTAGGGAGGAGGGTATGGCTCCCATGGAAAATTTGCAAGTGGAAATATTTAACTTATCAAATGACCGAGATTGAGAGGACACGTAAATTCATTACAGCGATAAAGAATTTGTTGCCAGTTTCAACGGTTGGAGAACTTGAATGACTCCTCCAGATTGTGGAAGCTAAGAGATAGAAATGATAGTGTGAACACCAAACTTGTAGATTGTGAAGTGATGTTGAGCAATACTGCAGTTTGGGTTCGGAAATTTGATATTTACAAGGCTGGTTAGATGGGAATGTGGTTTTTGAATGCTTGAAAACTGGTGATAGACTCGTAATATTAATCATGTTTAGTTGACATAATTGATGATTTACGCAATAATTGTGATGAGACAATGAGAAAGATTTCTCCCTTTTTCACATATTTCTTCTGCAG

Coding sequence (CDS)

TCCTTCTCTTCCTTTTCCACAAATTTTCCCCTTCATTCCCTTCCCCACAATTTTTCCATTCCTTCCAAAGTCAGTGGCTTTCACCACCGTCGCTGCACCTCTGTCGCATTGCCCGCCGCCGACGCTGACTCCAGCCGCAAGCTCCGCCCAGATCTGACTCCGCTGCCGCTGCCGCCGCTGATTCCAGCCTCCCTCGCGCCGCCGCACACTACTGCGCTGCAGGTTCCAACGCCAGCCAAATCTTCAACCGTTGCTGGGAATTTCATAGCTGAATATGCATCCTCCTCTAACTTTGCACAAGCACCCGATGTGTGCTGA

Protein sequence

SFSSFSTNFPLHSLPHNFSIPSKVSGFHHRRCTSVALPAADADSSRKLRPDLTPLPLPPLIPASLAPPHTTALQVPTPAKSSTVAGNFIAEYASSSNFAQAPDVC
Homology
[Close]
BLAST of Cucsat.G249 vs. NCBI nr
Match: KGN56274.1 (hypothetical protein Csa_009672 [Cucumis sativus])

HSP 1 Score: 163 bits (413), Expect = 6.39e-50
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0 

Query: 1  SFSSFSTNFPLHSLPHNFSIPSKVSGFHHRRCTSVALPAADADSSRKLRPDLTPLPLPPL 60
          SFSSFSTNFPLHSLPHNFSIPSKVSGFHHRRCTSVALPAADADSSRKLRPDLTPLPLPPL
Sbjct: 11 SFSSFSTNFPLHSLPHNFSIPSKVSGFHHRRCTSVALPAADADSSRKLRPDLTPLPLPPL 70

Query: 61 IPASLAPPHTTALQVPTPAKSSTV 84
          IPASLAPPHTTALQVPTPAKSSTV
Sbjct: 71 IPASLAPPHTTALQVPTPAKSSTV 94

[Close]
BLAST of Cucsat.G249 vs. ExPASy TrEMBL
Match: A0A0A0L5F8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G110710 PE=4 SV=1)

HSP 1 Score: 163 bits (413), Expect = 3.09e-50
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0 

Query: 1  SFSSFSTNFPLHSLPHNFSIPSKVSGFHHRRCTSVALPAADADSSRKLRPDLTPLPLPPL 60
          SFSSFSTNFPLHSLPHNFSIPSKVSGFHHRRCTSVALPAADADSSRKLRPDLTPLPLPPL
Sbjct: 11 SFSSFSTNFPLHSLPHNFSIPSKVSGFHHRRCTSVALPAADADSSRKLRPDLTPLPLPPL 70

Query: 61 IPASLAPPHTTALQVPTPAKSSTV 84
          IPASLAPPHTTALQVPTPAKSSTV
Sbjct: 71 IPASLAPPHTTALQVPTPAKSSTV 94

The following BLAST results are available for this feature:
BLAST of Cucsat.G249 vs.
Match NameE-valueIdentityDescription
BLAST of Cucsat.G249 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN56274.16.39e-50100.00hypothetical protein Csa_009672 [Cucumis sativus][more]
BLAST of Cucsat.G249 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L5F83.09e-50100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G110710 PE=4 SV=1[more]
BLAST of Cucsat.G249 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsat.G249.T7Cucsat.G249.T7mRNA