Cucsat.G2387 (gene) Cucumber (B10) v3

Overview


Name	Cucsat.G2387
Type	gene
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	heterogeneous nuclear ribonucleoprotein H2 isoform X1
Location	ctg1002: 4386688 .. 4389092 (+)
RNA-Seq Expression	Cucsat.G2387
Synteny	Cucsat.G2387

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AATCAAAGTTACGAAAGTTTTAACCCTAGTTTGTGTTTTTTGTGTTGAATTTGGGCGGTGGAATCGGAAGCCAAAATCGAAGTTCAGAATCAATCCTTCGTAATCTTGGTTAGGGTTTTCTTTTTCCCGCTTTCTTCTCTTCTCTTTCCCTTTGAATCCACTTCCTTAATCCTTCACAGTCCCTCCAATTTATTCCTTTTCCTTCCATTATCAGAGTGTAGCTTTTGGAGATTCAACACAATCATGTACGGACCCAGAGGGTAAGTCTAGAATTTCTGACCTTTCTCTCTTCGCTCTTGTCTTGTTTCATTTGGATTTTCATGGGTTGTTCTTGAATTTGTGTGCTGGGATTGAGAGCAGCTGGATTGAGGGATGAGTTCCTCTGTTATTCGTCTTGGTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAATTTTATTATAATTGTTATCAAATGGGGTTTTTTAGTAGAACATATTCTTTAAACAACAACTTATGTTTTTGTTAATGTAATTCAAATTGATGTCCTTTTTTTGTTTTATAAATAAAATGAAGGCGCGATTTATGAAACCATCTATGTGTTGCATTCTATTTACTTGATTCTCTTCTTTAGATTTTAACTTTAAAATCAACTCAATACAGTCGGTGGTTTTTCTTCGATCGGGTCGATTATCAGGAATCTCGTAGGATGCCATATATCTGAGTCGTATTAGGATTTGATTTTTCTTTTCTAAGTTTTAACCAGAAAGCAAGAATTTGAATGTTGTATCGGTGTCTTATGACCTGTCTCGTTTTTTTTTTAATACCACTATCAAATTTAGAAGAGGCTTTTGCAGCGTTATTTAAGCTATGGAGGCCAGTGATTTAATTGGTTAATTAATGTTCTCGTGAATTGTCTTTACTTTAACATGAAGGGCTTAAACTTATATGAACATTGGGAAATCATTTTCTACTGCTTGATGGGTTGGTGTTCACTGAGGCTCAAAATGCCTTTTCTGCTGGTACTTTTAGAAAGTCTTACTTATTCTATATCTAGTTAAATTGTTTTGTTTATAGGAGTGGTAATGGCATGTAACTTCATTGACCATAAATCGTGTACACCAATAGGTTTTAGAGGTGTAGGTTGGGCTTGGTTTTATTAACTTGCTTGAGTGGGGATTTTTCTTTTCTTTTTTCTGGGTTGGTAATTGAAGGGCAATGTTGGGAAGCGGGGGGGTTTCGGATGGGTACGAAGTCGGCTCAAAAAGACAAAGAATGATGGAACCGAATCCCTACTTCGCAGTTAGCAGCAGCACTGCTGGATTTCAACCTTACGGCTATGGGAGTTTTCCACCTACTCATGCCTTCCCTGTGGTTCGCCTTAGAGGACTTCCCTTCAACTGCACTGACATTGATATTTTCAAGTTCTTTGCTGGACTGGACATTGTGGATGTGCTGCTCGTCAACAAGAATGGACGGTTCATGGGAGAGGCCTTTGTTGTCTTTGCTGGCTCTGTGCAGGTTGAGTTCGCATTGCAACGGGATCGACAGAATATGGGACGTAGGTATGTAGAAGTCTTCAGGTGCAAAAGGCAGGATTATTACAACGCTGTTGCTGCAGAAGTAAATTATGAGGGTATTTATGATAATGACTACCACGGAAGCCCTCCTCCTCGACAAAAGAGGTTCAGTGACAAGGACCAGATGGAATACACTGAGATACTGAAACTTCGTGGTCTCCCCTTCTCTGTGACAAAATCCAACATCATTGAATTTTTCGGAGAGTTTGACCTTGCAGAAGATAGGATACATATTGCAAGTCGCCCAGATGGGAAGGCTACCGGGGAGGCCTATGTGGAGTTTGCTTCAGCAGAGGAGGCAAAGAGAGCAATGAGCAAGGACAAGATGACAATTGGATCGAGATACGTGGAGTTGTTTCCTTCAACCCCAAATGAAGCAAGAAGAGCTGAGTCAAGGTCAAGACAGTAAAGTAGGTAAACTTGGTCATGGAGTCTAAAAGGTTCTCTGTTGCTATATTTTTGTGCCGAGGCTTTGCCGTTCTTGTACTTTTTTCCAGTTTGTAGGATGACTATCGATGTGGTATATTCTCTGCAGTTTTTGCTGAAACTGTGGAGTAAATCGATACTGCATTTTGAGATTGAAATGTTAGTCTTATGGTTAAAGCACTGATCTTCTTTTCCTTCTTTTTCCTATTTCACCGCATTTCGTTTTCCATTGAGGTACCCTTTCTTTGTAGGGTTTACTCCAAATATGCATGAGATTAGGAATTTAGGCTACAGTTGTTGGAATTCAATTACTCAAAGTACTGCAAAAGGCCCATACATTAATGGTGTGGCAGACATTAATGAACAATAGCCAAAATTAAAAGCTGTCGTGAATTGTGTACTGTTGTTTATCATTTACCATTTCTCGTACATTCAACTAGGGGACTTTGATTGAATTCATTTGAAAA

Coding sequence (CDS)

ATGTTGGGAAGCGGGGGGGTTTCGGATGGGTACGAAGTCGGCTCAAAAAGACAAAGAATGATGGAACCGAATCCCTACTTCGCAGTTAGCAGCAGCACTGCTGGATTTCAACCTTACGGCTATGGGAGTTTTCCACCTACTCATGCCTTCCCTGTGGTTCGCCTTAGAGGACTTCCCTTCAACTGCACTGACATTGATATTTTCAAGTTCTTTGCTGGACTGGACATTGTGGATGTGCTGCTCGTCAACAAGAATGGACGGTTCATGGGAGAGGCCTTTGTTGTCTTTGCTGGCTCTGTGCAGGTTGAGTTCGCATTGCAACGGGATCGACAGAATATGGGACGTAGGTATGTAGAAGTCTTCAGGTGCAAAAGGCAGGATTATTACAACGCTGTTGCTGCAGAAGTAAATTATGAGGGTATTTATGATAATGACTACCACGGAAGCCCTCCTCCTCGACAAAAGAGGTTCAGTGACAAGGACCAGATGGAATACACTGAGATACTGAAACTTCGTGGTCTCCCCTTCTCTGTGACAAAATCCAACATCATTGAATTTTTCGGAGAGTTTGACCTTGCAGAAGATAGGATACATATTGCAAGTCGCCCAGATGGGAAGGCTACCGGGGAGGCCTATGTGGAGTTTGCTTCAGCAGAGGAGGCAAAGAGAGCAATGAGCAAGGACAAGATGACAATTGGATCGAGATACGTGGAGTTGTTTCCTTCAACCCCAAATGAAGCAAGAAGAGCTGAGTCAAGGTCAAGACAGTAA

Protein sequence

MLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVVRLRGLPFNCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVAAEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRGLPFSVTKSNIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASAEEAKRAMSKDKMTIGSRYVELFPSTPNEARRAESRSRQ

Homology

[Close]

BLAST of Cucsat.G2387 vs. ExPASy Swiss-Prot
Match: Q5E9J1 (Heterogeneous nuclear ribonucleoprotein F OS=Bos taurus OX=9913 GN=HNRNPF PE=2 SV=3)

HSP 1 Score: 119.8 bits (299), Expect = 4.6e-26
Identity = 74/202 (36.63%), Postives = 108/202 (53.47%), Query Frame = 0


Query: 52  VVRLRGLPFNCTDIDIFKFFAGLDIVDVL-----LVNKNGRFMGEAFVVFAGSVQVEFAL 111
           VV+LRGLP++C+  D+  F +   I D +     +  + GR  GEAFV       V+ AL
Sbjct: 12  VVKLRGLPWSCSVEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLAL 71

Query: 112 QRDRQNMGRRYVEVFRCKRQDYYNAVAAEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYT 171
           ++DR++MG RY+EVF+  R +               D     S P      +D       
Sbjct: 72  KKDRESMGHRYIEVFKSHRTE--------------MDWVLKHSGPNSADTAND------- 131

Query: 172 EILKLRGLPFSVTKSNIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASAEEAKRAMS 231
             ++LRGLPF  TK  II+FF   ++  + I +   P+GK TGEA+V+FAS E A++A+ 
Sbjct: 132 GFVRLRGLPFGCTKEEIIQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG 191

Query: 232 KDKMTIGSRYVELFPSTPNEAR 249
           K K  IG RY+E+F S+  E R
Sbjct: 192 KHKERIGHRYIEVFKSSQEEVR 192

[Close]

BLAST of Cucsat.G2387 vs. ExPASy Swiss-Prot
Match: P52597 (Heterogeneous nuclear ribonucleoprotein F OS=Homo sapiens OX=9606 GN=HNRNPF PE=1 SV=3)

HSP 1 Score: 119.4 bits (298), Expect = 6.0e-26
Identity = 73/202 (36.14%), Postives = 107/202 (52.97%), Query Frame = 0


Query: 52  VVRLRGLPFNCTDIDIFKFFAGLDIVD-----VLLVNKNGRFMGEAFVVFAGSVQVEFAL 111
           VV+LRGLP++C+  D+  F +   I D       +  + GR  GEAFV       V+ AL
Sbjct: 12  VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMAL 71

Query: 112 QRDRQNMGRRYVEVFRCKRQDYYNAVAAEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYT 171
           ++DR++MG RY+EVF+  R +               D     S P      +D       
Sbjct: 72  KKDRESMGHRYIEVFKSHRTE--------------MDWVLKHSGPNSADSAND------- 131

Query: 172 EILKLRGLPFSVTKSNIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASAEEAKRAMS 231
             ++LRGLPF  TK  I++FF   ++  + I +   P+GK TGEA+V+FAS E A++A+ 
Sbjct: 132 GFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG 191

Query: 232 KDKMTIGSRYVELFPSTPNEAR 249
           K K  IG RY+E+F S+  E R
Sbjct: 192 KHKERIGHRYIEVFKSSQEEVR 192

[Close]

BLAST of Cucsat.G2387 vs. ExPASy Swiss-Prot
Match: Q60HC3 (Heterogeneous nuclear ribonucleoprotein F OS=Macaca fascicularis OX=9541 GN=HNRNPF PE=2 SV=3)

HSP 1 Score: 119.4 bits (298), Expect = 6.0e-26
Identity = 73/202 (36.14%), Postives = 107/202 (52.97%), Query Frame = 0


Query: 52  VVRLRGLPFNCTDIDIFKFFAGLDIVD-----VLLVNKNGRFMGEAFVVFAGSVQVEFAL 111
           VV+LRGLP++C+  D+  F +   I D       +  + GR  GEAFV       V+ AL
Sbjct: 12  VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMAL 71

Query: 112 QRDRQNMGRRYVEVFRCKRQDYYNAVAAEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYT 171
           ++DR++MG RY+EVF+  R +               D     S P      +D       
Sbjct: 72  KKDRESMGHRYIEVFKSHRTE--------------MDWVLKHSGPNSADSAND------- 131

Query: 172 EILKLRGLPFSVTKSNIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASAEEAKRAMS 231
             ++LRGLPF  TK  I++FF   ++  + I +   P+GK TGEA+V+FAS E A++A+ 
Sbjct: 132 GFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG 191

Query: 232 KDKMTIGSRYVELFPSTPNEAR 249
           K K  IG RY+E+F S+  E R
Sbjct: 192 KHKERIGHRYIEVFKSSQEEVR 192

[Close]

BLAST of Cucsat.G2387 vs. ExPASy Swiss-Prot
Match: Q9Z2X1 (Heterogeneous nuclear ribonucleoprotein F OS=Mus musculus OX=10090 GN=Hnrnpf PE=1 SV=3)

HSP 1 Score: 119.4 bits (298), Expect = 6.0e-26
Identity = 73/202 (36.14%), Postives = 108/202 (53.47%), Query Frame = 0


Query: 52  VVRLRGLPFNCTDIDIFKFFAGLDIVDVL-----LVNKNGRFMGEAFVVFAGSVQVEFAL 111
           VV+LRGLP++C+  D+  F +   I D +     +  + GR  GEAFV       V+ AL
Sbjct: 12  VVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLAL 71

Query: 112 QRDRQNMGRRYVEVFRCKRQDYYNAVAAEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYT 171
           ++DR++MG RY+EVF+  R +               D     S P      +D       
Sbjct: 72  KKDRESMGHRYIEVFKSHRTE--------------MDWVLKHSGPNSADSAND------- 131

Query: 172 EILKLRGLPFSVTKSNIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASAEEAKRAMS 231
             ++LRGLPF  TK  I++FF   ++  + I +   P+GK TGEA+V+FAS E A++A+ 
Sbjct: 132 GFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG 191

Query: 232 KDKMTIGSRYVELFPSTPNEAR 249
           K K  IG RY+E+F S+  E R
Sbjct: 192 KHKERIGHRYIEVFKSSQEEVR 192

[Close]

BLAST of Cucsat.G2387 vs. ExPASy Swiss-Prot
Match: Q794E4 (Heterogeneous nuclear ribonucleoprotein F OS=Rattus norvegicus OX=10116 GN=Hnrnpf PE=1 SV=3)

HSP 1 Score: 119.4 bits (298), Expect = 6.0e-26
Identity = 73/202 (36.14%), Postives = 108/202 (53.47%), Query Frame = 0


Query: 52  VVRLRGLPFNCTDIDIFKFFAGLDIVDVL-----LVNKNGRFMGEAFVVFAGSVQVEFAL 111
           VV+LRGLP++C+  D+  F +   I D +     +  + GR  GEAFV       V+ AL
Sbjct: 12  VVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLAL 71

Query: 112 QRDRQNMGRRYVEVFRCKRQDYYNAVAAEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYT 171
           ++DR++MG RY+EVF+  R +               D     S P      +D       
Sbjct: 72  KKDRESMGHRYIEVFKSHRTE--------------MDWVLKHSGPNSADSAND------- 131

Query: 172 EILKLRGLPFSVTKSNIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASAEEAKRAMS 231
             ++LRGLPF  TK  I++FF   ++  + I +   P+GK TGEA+V+FAS E A++A+ 
Sbjct: 132 GFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG 191

Query: 232 KDKMTIGSRYVELFPSTPNEAR 249
           K K  IG RY+E+F S+  E R
Sbjct: 192 KHKERIGHRYIEVFKSSQEEVR 192

[Close]

BLAST of Cucsat.G2387 vs. NCBI nr
Match: XP_004134826.1 (heterogeneous nuclear ribonucleoprotein H2 isoform X1 [Cucumis sativus] >XP_011658072.1 heterogeneous nuclear ribonucleoprotein H2 isoform X1 [Cucumis sativus] >KGN48994.1 hypothetical protein Csa_003171 [Cucumis sativus])

HSP 1 Score: 516 bits (1330), Expect = 1.12e-184
Identity = 256/256 (100.00%), Postives = 256/256 (100.00%), Query Frame = 0


Query: 1   MLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVVRLRGLPF 60
           MLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVVRLRGLPF
Sbjct: 8   MLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVVRLRGLPF 67

Query: 61  NCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNMGRRYVEV 120
           NCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNMGRRYVEV
Sbjct: 68  NCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNMGRRYVEV 127

Query: 121 FRCKRQDYYNAVAAEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRGLPFSVTK 180
           FRCKRQDYYNAVAAEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRGLPFSVTK
Sbjct: 128 FRCKRQDYYNAVAAEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRGLPFSVTK 187

Query: 181 SNIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASAEEAKRAMSKDKMTIGSRYVELF 240
           SNIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASAEEAKRAMSKDKMTIGSRYVELF
Sbjct: 188 SNIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASAEEAKRAMSKDKMTIGSRYVELF 247

Query: 241 PSTPNEARRAESRSRQ 256
           PSTPNEARRAESRSRQ
Sbjct: 248 PSTPNEARRAESRSRQ 263

[Close]

BLAST of Cucsat.G2387 vs. NCBI nr
Match: XP_008440908.1 (PREDICTED: heterogeneous nuclear ribonucleoprotein H2 isoform X1 [Cucumis melo] >XP_016899253.1 PREDICTED: heterogeneous nuclear ribonucleoprotein H2 isoform X1 [Cucumis melo])

HSP 1 Score: 516 bits (1329), Expect = 1.59e-184
Identity = 255/256 (99.61%), Postives = 256/256 (100.00%), Query Frame = 0


Query: 1   MLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVVRLRGLPF 60
           MLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVVRLRGLPF
Sbjct: 8   MLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVVRLRGLPF 67

Query: 61  NCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNMGRRYVEV 120
           NCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNMGRRYVEV
Sbjct: 68  NCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNMGRRYVEV 127

Query: 121 FRCKRQDYYNAVAAEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRGLPFSVTK 180
           FRCKRQDYYNA+AAEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRGLPFSVTK
Sbjct: 128 FRCKRQDYYNAIAAEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRGLPFSVTK 187

Query: 181 SNIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASAEEAKRAMSKDKMTIGSRYVELF 240
           SNIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASAEEAKRAMSKDKMTIGSRYVELF
Sbjct: 188 SNIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASAEEAKRAMSKDKMTIGSRYVELF 247

Query: 241 PSTPNEARRAESRSRQ 256
           PSTPNEARRAESRSRQ
Sbjct: 248 PSTPNEARRAESRSRQ 263

[Close]

BLAST of Cucsat.G2387 vs. NCBI nr
Match: XP_038882740.1 (heterogeneous nuclear ribonucleoprotein H2 isoform X1 [Benincasa hispida])

HSP 1 Score: 515 bits (1327), Expect = 3.20e-184
Identity = 255/256 (99.61%), Postives = 256/256 (100.00%), Query Frame = 0


Query: 1   MLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVVRLRGLPF 60
           MLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVVRLRGLPF
Sbjct: 8   MLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVVRLRGLPF 67

Query: 61  NCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNMGRRYVEV 120
           NCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNMGRRYVEV
Sbjct: 68  NCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNMGRRYVEV 127

Query: 121 FRCKRQDYYNAVAAEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRGLPFSVTK 180
           FRCKRQDYYNAVA+EVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRGLPFSVTK
Sbjct: 128 FRCKRQDYYNAVASEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRGLPFSVTK 187

Query: 181 SNIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASAEEAKRAMSKDKMTIGSRYVELF 240
           SNIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASAEEAKRAMSKDKMTIGSRYVELF
Sbjct: 188 SNIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASAEEAKRAMSKDKMTIGSRYVELF 247

Query: 241 PSTPNEARRAESRSRQ 256
           PSTPNEARRAESRSRQ
Sbjct: 248 PSTPNEARRAESRSRQ 263

[Close]

BLAST of Cucsat.G2387 vs. NCBI nr
Match: XP_022133202.1 (heterogeneous nuclear ribonucleoprotein H2 isoform X1 [Momordica charantia] >XP_022133203.1 heterogeneous nuclear ribonucleoprotein H2 isoform X1 [Momordica charantia])

HSP 1 Score: 505 bits (1301), Expect = 2.95e-180
Identity = 250/256 (97.66%), Postives = 252/256 (98.44%), Query Frame = 0


Query: 1   MLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVVRLRGLPF 60
           MLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPT AFPVVRLRGLPF
Sbjct: 8   MLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTPAFPVVRLRGLPF 67

Query: 61  NCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNMGRRYVEV 120
           NCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGS+QVEFALQRDRQNMGRRYVEV
Sbjct: 68  NCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSMQVEFALQRDRQNMGRRYVEV 127

Query: 121 FRCKRQDYYNAVAAEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRGLPFSVTK 180
           FRCKRQDYYNAVAAEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRGLPFSVTK
Sbjct: 128 FRCKRQDYYNAVAAEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRGLPFSVTK 187

Query: 181 SNIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASAEEAKRAMSKDKMTIGSRYVELF 240
           SNI EFFGEFDL EDR+HIASRPDGKATGEAYVEFASAEEAKRAMSKDKM IGSRYVELF
Sbjct: 188 SNITEFFGEFDLTEDRVHIASRPDGKATGEAYVEFASAEEAKRAMSKDKMMIGSRYVELF 247

Query: 241 PSTPNEARRAESRSRQ 256
           PSTPNEARRAESRSRQ
Sbjct: 248 PSTPNEARRAESRSRQ 263

[Close]

BLAST of Cucsat.G2387 vs. NCBI nr
Match: XP_023544124.1 (heterogeneous nuclear ribonucleoprotein H-like isoform X2 [Cucurbita pepo subsp. pepo] >XP_023544125.1 heterogeneous nuclear ribonucleoprotein H-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 504 bits (1297), Expect = 9.29e-180
Identity = 249/256 (97.27%), Postives = 253/256 (98.83%), Query Frame = 0


Query: 1   MLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVVRLRGLPF 60
           MLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVVRLRGLPF
Sbjct: 1   MLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVVRLRGLPF 60

Query: 61  NCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNMGRRYVEV 120
           NCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGS+QVEFALQRDRQNMGRRYVEV
Sbjct: 61  NCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSLQVEFALQRDRQNMGRRYVEV 120

Query: 121 FRCKRQDYYNAVAAEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRGLPFSVTK 180
           F CKRQDYYNAVAAEVNYEGIYDNDY+GSPPPRQKR SDKDQMEYTEILKLRGLPFSVTK
Sbjct: 121 FSCKRQDYYNAVAAEVNYEGIYDNDYNGSPPPRQKRISDKDQMEYTEILKLRGLPFSVTK 180

Query: 181 SNIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASAEEAKRAMSKDKMTIGSRYVELF 240
           SNIIEFFGEFDLAE+RIHIASRPDGKATGEAYVEFAS E+AKRAMSKDKMTIGSRYVELF
Sbjct: 181 SNIIEFFGEFDLAEERIHIASRPDGKATGEAYVEFASVEDAKRAMSKDKMTIGSRYVELF 240

Query: 241 PSTPNEARRAESRSRQ 256
           PSTPNEARRAESRSRQ
Sbjct: 241 PSTPNEARRAESRSRQ 256

[Close]

BLAST of Cucsat.G2387 vs. ExPASy TrEMBL
Match: A0A0A0KJN7 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G509630 PE=4 SV=1)

HSP 1 Score: 516 bits (1330), Expect = 5.41e-185
Identity = 256/256 (100.00%), Postives = 256/256 (100.00%), Query Frame = 0


Query: 1   MLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVVRLRGLPF 60
           MLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVVRLRGLPF
Sbjct: 8   MLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVVRLRGLPF 67

Query: 61  NCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNMGRRYVEV 120
           NCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNMGRRYVEV
Sbjct: 68  NCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNMGRRYVEV 127

Query: 121 FRCKRQDYYNAVAAEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRGLPFSVTK 180
           FRCKRQDYYNAVAAEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRGLPFSVTK
Sbjct: 128 FRCKRQDYYNAVAAEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRGLPFSVTK 187

Query: 181 SNIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASAEEAKRAMSKDKMTIGSRYVELF 240
           SNIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASAEEAKRAMSKDKMTIGSRYVELF
Sbjct: 188 SNIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASAEEAKRAMSKDKMTIGSRYVELF 247

Query: 241 PSTPNEARRAESRSRQ 256
           PSTPNEARRAESRSRQ
Sbjct: 248 PSTPNEARRAESRSRQ 263

[Close]

BLAST of Cucsat.G2387 vs. ExPASy TrEMBL
Match: A0A1S4DTH1 (heterogeneous nuclear ribonucleoprotein H2 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103485191 PE=4 SV=1)

HSP 1 Score: 516 bits (1329), Expect = 7.69e-185
Identity = 255/256 (99.61%), Postives = 256/256 (100.00%), Query Frame = 0


Query: 1   MLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVVRLRGLPF 60
           MLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVVRLRGLPF
Sbjct: 8   MLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVVRLRGLPF 67

Query: 61  NCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNMGRRYVEV 120
           NCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNMGRRYVEV
Sbjct: 68  NCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNMGRRYVEV 127

Query: 121 FRCKRQDYYNAVAAEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRGLPFSVTK 180
           FRCKRQDYYNA+AAEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRGLPFSVTK
Sbjct: 128 FRCKRQDYYNAIAAEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRGLPFSVTK 187

Query: 181 SNIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASAEEAKRAMSKDKMTIGSRYVELF 240
           SNIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASAEEAKRAMSKDKMTIGSRYVELF
Sbjct: 188 SNIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASAEEAKRAMSKDKMTIGSRYVELF 247

Query: 241 PSTPNEARRAESRSRQ 256
           PSTPNEARRAESRSRQ
Sbjct: 248 PSTPNEARRAESRSRQ 263

[Close]

BLAST of Cucsat.G2387 vs. ExPASy TrEMBL
Match: A0A6J1BYF3 (heterogeneous nuclear ribonucleoprotein H2 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111005858 PE=4 SV=1)

HSP 1 Score: 505 bits (1301), Expect = 1.43e-180
Identity = 250/256 (97.66%), Postives = 252/256 (98.44%), Query Frame = 0


Query: 1   MLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVVRLRGLPF 60
           MLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPT AFPVVRLRGLPF
Sbjct: 8   MLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTPAFPVVRLRGLPF 67

Query: 61  NCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNMGRRYVEV 120
           NCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGS+QVEFALQRDRQNMGRRYVEV
Sbjct: 68  NCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSMQVEFALQRDRQNMGRRYVEV 127

Query: 121 FRCKRQDYYNAVAAEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRGLPFSVTK 180
           FRCKRQDYYNAVAAEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRGLPFSVTK
Sbjct: 128 FRCKRQDYYNAVAAEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRGLPFSVTK 187

Query: 181 SNIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASAEEAKRAMSKDKMTIGSRYVELF 240
           SNI EFFGEFDL EDR+HIASRPDGKATGEAYVEFASAEEAKRAMSKDKM IGSRYVELF
Sbjct: 188 SNITEFFGEFDLTEDRVHIASRPDGKATGEAYVEFASAEEAKRAMSKDKMMIGSRYVELF 247

Query: 241 PSTPNEARRAESRSRQ 256
           PSTPNEARRAESRSRQ
Sbjct: 248 PSTPNEARRAESRSRQ 263

[Close]

BLAST of Cucsat.G2387 vs. ExPASy TrEMBL
Match: A0A6J1EFC5 (heterogeneous nuclear ribonucleoprotein H2-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111433681 PE=4 SV=1)

HSP 1 Score: 504 bits (1297), Expect = 5.81e-180
Identity = 249/256 (97.27%), Postives = 252/256 (98.44%), Query Frame = 0


Query: 1   MLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVVRLRGLPF 60
           MLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSST GFQPYGYGSFPPTHAFPVVRLRGLPF
Sbjct: 8   MLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTVGFQPYGYGSFPPTHAFPVVRLRGLPF 67

Query: 61  NCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNMGRRYVEV 120
           NC+DIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNMGRRYVEV
Sbjct: 68  NCSDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNMGRRYVEV 127

Query: 121 FRCKRQDYYNAVAAEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRGLPFSVTK 180
           FRCKRQDYYNA+AAEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRGLPFSV K
Sbjct: 128 FRCKRQDYYNAIAAEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRGLPFSVKK 187

Query: 181 SNIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASAEEAKRAMSKDKMTIGSRYVELF 240
           S+IIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFAS EEAKRAMSKDKMTIGSRYVELF
Sbjct: 188 SDIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASEEEAKRAMSKDKMTIGSRYVELF 247

Query: 241 PSTPNEARRAESRSRQ 256
           PST NEARRAESRSRQ
Sbjct: 248 PSTSNEARRAESRSRQ 263

[Close]

BLAST of Cucsat.G2387 vs. ExPASy TrEMBL
Match: A0A6J1IR18 (heterogeneous nuclear ribonucleoprotein H-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111477672 PE=4 SV=1)

HSP 1 Score: 503 bits (1295), Expect = 9.08e-180
Identity = 249/256 (97.27%), Postives = 254/256 (99.22%), Query Frame = 0


Query: 1   MLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVVRLRGLPF 60
           MLGSGGVSDGY+VGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVVRLRGLPF
Sbjct: 1   MLGSGGVSDGYKVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVVRLRGLPF 60

Query: 61  NCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNMGRRYVEV 120
           NCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGS+QVEFALQRDRQNMGRRYVEV
Sbjct: 61  NCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSLQVEFALQRDRQNMGRRYVEV 120

Query: 121 FRCKRQDYYNAVAAEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRGLPFSVTK 180
           F CKRQDYYNAVAAEVNYEGIY+NDY+GSPPPRQKR SDKDQMEYTEILKLRGLPFSVTK
Sbjct: 121 FSCKRQDYYNAVAAEVNYEGIYNNDYNGSPPPRQKRISDKDQMEYTEILKLRGLPFSVTK 180

Query: 181 SNIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASAEEAKRAMSKDKMTIGSRYVELF 240
           SNIIEFFGEFDLAE+RIHIASRPDGKATGEAYVEFASAEEAKRAMSKDKMTIGSRYVELF
Sbjct: 181 SNIIEFFGEFDLAEERIHIASRPDGKATGEAYVEFASAEEAKRAMSKDKMTIGSRYVELF 240

Query: 241 PSTPNEARRAESRSRQ 256
           PSTPNEARRAESRSRQ
Sbjct: 241 PSTPNEARRAESRSRQ 256

[Close]

BLAST of Cucsat.G2387 vs. TAIR 10
Match: AT5G66010.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 344.4 bits (882), Expect = 8.1e-95
Identity = 176/263 (66.92%), Postives = 206/263 (78.33%), Query Frame = 0


Query: 1   MLGSGGV---SDGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVVRLRG 60
           M GS G    S GYEVGSKRQRMM+ NPY AV +    F P+GY        FPVVRLRG
Sbjct: 1   MYGSRGAMFGSGGYEVGSKRQRMMQSNPYLAVGTGPTSFPPFGYAG-----GFPVVRLRG 60

Query: 61  LPFNCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNMGRRY 120
           LPFNC DIDIF+FFAGL+IVDVLLV+KNG+F GEAFVVFAG +QVE ALQRDR NMGRRY
Sbjct: 61  LPFNCADIDIFEFFAGLNIVDVLLVSKNGKFSGEAFVVFAGPMQVEIALQRDRHNMGRRY 120

Query: 121 VEVFRCKRQDYYNAVAAEVNYEGIYDNDYHGSPPP----RQKRFSDKDQMEYTEILKLRG 180
           VEVFRC +QDYYNAVAAE   EG Y+ +   SPPP    R KRFS+K+++EYTE+LK+RG
Sbjct: 121 VEVFRCSKQDYYNAVAAE---EGAYEYEVRASPPPTGPSRAKRFSEKEKLEYTEVLKMRG 180

Query: 181 LPFSVTKSNIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASAEEAKRAMSKDKMTIG 240
           LP+SV K  IIEFF  + + + R+ +  RPDGKATGEA+VEF + EEA+RAM+KDKM+IG
Sbjct: 181 LPYSVNKPQIIEFFSGYKVIQGRVQVVCRPDGKATGEAFVEFETGEEARRAMAKDKMSIG 240

Query: 241 SRYVELFPSTPNEARRAESRSRQ 257
           SRYVELFP+T  EARRAE+RSRQ
Sbjct: 241 SRYVELFPTTREEARRAEARSRQ 255

[Close]

BLAST of Cucsat.G2387 vs. TAIR 10
Match: AT3G20890.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 236.1 bits (601), Expect = 3.1e-62
Identity = 131/288 (45.49%), Postives = 181/288 (62.85%), Query Frame = 0


Query: 3   GSGGVSDGYEVGSKRQRMME---PNPYFAV-SSSTAGFQPYGYGSFPPTHAFPVVRLRGL 62
           G G   DG E+G KRQRM++   P P++    SS   + PYG+ + PP   FP VRLRGL
Sbjct: 5   GYGDGPDGREMGPKRQRMIDQGPPGPFYGPHPSSGFMYNPYGFVAPPPPPPFPAVRLRGL 64

Query: 63  PFNCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNMGRRYV 122
           PF+C ++D+ +FF GLD+VDVL V++N +  GEAF V    +QV+FALQ++RQNMGRRYV
Sbjct: 65  PFDCAELDVVEFFHGLDVVDVLFVHRNNKVTGEAFCVLGYPLQVDFALQKNRQNMGRRYV 124

Query: 123 EVFRCKRQDYYNAVAAEVNYEGIY--------------------------DNDYHGSPPP 182
           EVFR  +Q+YY A+A EV    ++                               GS P 
Sbjct: 125 EVFRSTKQEYYKAIANEVAESRVHGMASGGGGGLGGGNGSGGGGGGGGGGGRISGGSSPR 184

Query: 183 R---QKRFSD--KDQMEYTEILKLRGLPFSVTKSNIIEFFGEFDLAEDRIHIASRPDGKA 242
           R   + R SD  K+ +E+T IL+LRGLPFS  K +I++FF +F+L+ED +H+    +G+ 
Sbjct: 185 RHVQRARSSDDGKEDIEHTGILRLRGLPFSAGKEDILDFFKDFELSEDFVHVTVNGEGRP 244

Query: 243 TGEAYVEFASAEEAKRAMSKDKMTIGSRYVELFPSTPNEARRAESRSR 256
           TGEA+VEF +AE+++ AM KD+ T+GSRY+ELFPS+  E   A SR R
Sbjct: 245 TGEAFVEFRNAEDSRAAMVKDRKTLGSRYIELFPSSVEELEEALSRGR 292

[Close]

BLAST of Cucsat.G2387 vs. TAIR 10
Match: AT5G66010.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 214.2 bits (544), Expect = 1.3e-55
Identity = 107/161 (66.46%), Postives = 130/161 (80.75%), Query Frame = 0


Query: 100 VQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVAAEVNYEGIYDNDYHGSPPP----RQK 159
           +QVE ALQRDR NMGRRYVEVFRC +QDYYNAVAAE   EG Y+ +   SPPP    R K
Sbjct: 1   MQVEIALQRDRHNMGRRYVEVFRCSKQDYYNAVAAE---EGAYEYEVRASPPPTGPSRAK 60

Query: 160 RFSDKDQMEYTEILKLRGLPFSVTKSNIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEF 219
           RFS+K+++EYTE+LK+RGLP+SV K  IIEFF  + + + R+ +  RPDGKATGEA+VEF
Sbjct: 61  RFSEKEKLEYTEVLKMRGLPYSVNKPQIIEFFSGYKVIQGRVQVVCRPDGKATGEAFVEF 120

Query: 220 ASAEEAKRAMSKDKMTIGSRYVELFPSTPNEARRAESRSRQ 257
            + EEA+RAM+KDKM+IGSRYVELFP+T  EARRAE+RSRQ
Sbjct: 121 ETGEEARRAMAKDKMSIGSRYVELFPTTREEARRAEARSRQ 158

[Close]

BLAST of Cucsat.G2387 vs. TAIR 10
Match: AT4G36960.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 51.6 bits (122), Expect = 1.1e-06
Identity = 28/85 (32.94%), Postives = 49/85 (57.65%), Query Frame = 0


Query: 169 LKLRGLPFSVTKSNIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASAEEAKRAMSKD 228
           L + G+P+ +    + ++  +F   ED I +  R  G++ G  YV FASAE+AK A+ K 
Sbjct: 5   LVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNAL-KG 64

Query: 229 KMTIGSRYVELFPSTPNEARRAESR 254
           +  +G+R +E+  +TP E  R  ++
Sbjct: 65  EHFLGNRILEVKVATPKEEMRQPAK 88

[Close]

BLAST of Cucsat.G2387 vs. TAIR 10
Match: AT4G36960.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 51.6 bits (122), Expect = 1.1e-06
Identity = 28/85 (32.94%), Postives = 49/85 (57.65%), Query Frame = 0


Query: 169 LKLRGLPFSVTKSNIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASAEEAKRAMSKD 228
           L + G+P+ +    + ++  +F   ED I +  R  G++ G  YV FASAE+AK A+ K 
Sbjct: 5   LVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNAL-KG 64

Query: 229 KMTIGSRYVELFPSTPNEARRAESR 254
           +  +G+R +E+  +TP E  R  ++
Sbjct: 65  EHFLGNRILEVKVATPKEEMRQPAK 88

The following BLAST results are available for this feature:

BLAST of Cucsat.G2387 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q5E9J1	4.6e-26	36.63	Heterogeneous nuclear ribonucleoprotein F OS=Bos taurus OX=9913 GN=HNRNPF PE=2 S...	[more]
P52597	6.0e-26	36.14	Heterogeneous nuclear ribonucleoprotein F OS=Homo sapiens OX=9606 GN=HNRNPF PE=1...	[more]
Q60HC3	6.0e-26	36.14	Heterogeneous nuclear ribonucleoprotein F OS=Macaca fascicularis OX=9541 GN=HNRN...	[more]
Q9Z2X1	6.0e-26	36.14	Heterogeneous nuclear ribonucleoprotein F OS=Mus musculus OX=10090 GN=Hnrnpf PE=...	[more]
Q794E4	6.0e-26	36.14	Heterogeneous nuclear ribonucleoprotein F OS=Rattus norvegicus OX=10116 GN=Hnrnp...	[more]

BLAST of Cucsat.G2387 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004134826.1	1.12e-184	100.00	heterogeneous nuclear ribonucleoprotein H2 isoform X1 [Cucumis sativus] >XP_0116...	[more]
XP_008440908.1	1.59e-184	99.61	PREDICTED: heterogeneous nuclear ribonucleoprotein H2 isoform X1 [Cucumis melo] ...	[more]
XP_038882740.1	3.20e-184	99.61	heterogeneous nuclear ribonucleoprotein H2 isoform X1 [Benincasa hispida]	[more]
XP_022133202.1	2.95e-180	97.66	heterogeneous nuclear ribonucleoprotein H2 isoform X1 [Momordica charantia] >XP_...	[more]
XP_023544124.1	9.29e-180	97.27	heterogeneous nuclear ribonucleoprotein H-like isoform X2 [Cucurbita pepo subsp....	[more]

BLAST of Cucsat.G2387 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KJN7	5.41e-185	100.00	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G509630 PE=4 SV...	[more]
A0A1S4DTH1	7.69e-185	99.61	heterogeneous nuclear ribonucleoprotein H2 isoform X1 OS=Cucumis melo OX=3656 GN...	[more]
A0A6J1BYF3	1.43e-180	97.66	heterogeneous nuclear ribonucleoprotein H2 isoform X1 OS=Momordica charantia OX=...	[more]
A0A6J1EFC5	5.81e-180	97.27	heterogeneous nuclear ribonucleoprotein H2-like isoform X1 OS=Cucurbita moschata...	[more]
A0A6J1IR18	9.08e-180	97.27	heterogeneous nuclear ribonucleoprotein H-like isoform X2 OS=Cucurbita maxima OX...	[more]

BLAST of Cucsat.G2387 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G66010.1	8.1e-95	66.92	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G20890.1	3.1e-62	45.49	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G66010.2	1.3e-55	66.46	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G36960.1	1.1e-06	32.94	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G36960.2	1.1e-06	32.94	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 168..240 e-value: 1.0E-8 score: 45.0 coord: 52..121 e-value: 1.3E-5 score: 34.6
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 54..116 e-value: 1.7E-6 score: 27.8 coord: 171..237 e-value: 2.2E-8 score: 33.8
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 167..244 score: 10.274912
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 152..256 e-value: 2.0E-29 score: 103.7
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 49..134 e-value: 3.2E-23 score: 83.7
None	No IPR available	PANTHER	PTHR13976:SF71	RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN	coord: 3..256
None	No IPR available	PANTHER	PTHR13976	HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN-RELATED	coord: 3..256
None	No IPR available	CDD	cd12254	RRM_hnRNPH_ESRPs_RBM12_like	coord: 168..240 e-value: 7.18808E-29 score: 102.635
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 45..130
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 166..253

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsat.G2387.T1	Cucsat.G2387.T1	mRNA
Cucsat.G2387.T6	Cucsat.G2387.T6	mRNA
Cucsat.G2387.T5	Cucsat.G2387.T5	mRNA
Cucsat.G2387.T3	Cucsat.G2387.T3	mRNA
Cucsat.G2387.T2	Cucsat.G2387.T2	mRNA
Cucsat.G2387.T7	Cucsat.G2387.T7	mRNA
Cucsat.G2387.T4	Cucsat.G2387.T4	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:1990904	ribonucleoprotein complex
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding