Cucsat.G2300 (gene) Cucumber (B10) v3

Overview


Name	Cucsat.G2300
Type	gene
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	protein SCO1 homolog 2, mitochondrial
Location	ctg1002: 3199517 .. 3202565 (+)
RNA-Seq Expression	Cucsat.G2300
Synteny	Cucsat.G2300

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AGCTTAAACATAGATGGTAGATGGATAGACATGATGAATTTCAAGATAATTGCTCCACTCCATTCCATATAGTGTTAAAAGGAACCTGAAAAATAAAAATGGGAGAAAGTGATTTTTGATTGAGCTGCTCTCATTTTAAGTATTATTATATTCCATCTTGGTTGGAGTTAGGGGGAGGAAGCCATAGTCCGTGTCGGCATCGAACTCCGATTAGTCAAGGTCAGGGAAGCGTTGCATTTGCCGGAGGAACATCAAAATTTCGTATTGCATACATTCATATCCTCAAATGTCAAAATCTATGCGGATTTTGATACTTTTAGGAGGTAAACGACCTTGGGGAGCAAGGCAACTCCGGAGGGTAAATACCCCAAGCTGACTTTCAATCAATTTCATTACCGATTGACATGGGTTTTTGGCTCAACCCACGATTCTTCATAACCTCCTAATAAAGCCCCTTCACTCAACAAACAATGCTCACTTTTCGCTCTATTTTCTCAACCTCCAAACATCACTCCCGTCAGGCTCCATCTGTATTTCAAAGGTTTTTCCCTTAAACCCCCTTTTGTACCCATTCCCGCTGGTTATGTTGCGTTTTATTACTGTTTATATGCCTTTCTATTATCTTTCTCTCAATCCAAATCCCGCATGTGCAAATAATTATCCCGCTGAGTTGGTTTCTGCTTTCTATCAATGCAATTCCATGTTTTGGTTTATCAATAACTTACTTTAAATTGTTAACTGGAGGCATACGGCTGTGACTATATTTGTATTGGGATCGTTCTTTCCAGTGAACCTGGTTAATTTTGAATTTTGGCGTAGGTTACATCCATCAATTAGCGTTCTGTCCTGCAAATGTTCCACATCATCAAAATACAGCAAGGAAAGACCTGAAGTTCCTCTTCTATCCGCAGATGGACATACTTCTTCTTCATGGACTACTTATATCATTGTATGACCTGATCTCATCTTTTAGTTTCAAGTTTCTCCTTGTTGGGTAAATATAGTTTTGTGAAGACGTTTTAAATTGGCCTTCTTTTGTGTTTCGTTACATTACTATTCTATACTAATCATCATAATGCCTTTTTGAATTTCTTTGCTTTACTTTTATTATTTTTGTTTTTGTGCAGCCAGCTGCGGTGATGGGTTTTGTTGGGTTAGCAGCCTTTGTACATTATAACGATGAGAGAAGAGCTGTCTTGAAAGGTTACTATCTTTGTGCTCTTCTGTCGATTTTTTGCTGCCATTACAATTAGTTTCAGTAATTTATTGTCTGCATTAAGATACGAGAAAGATTATATGGCACTAGCAGTCGTGTTAGGACTTGGGACGACCTCAAGAAACCATAGATAGTTGTGGAACCATCCAGTAGTTGTGAATTTCCTAGACTTCTATATGCTCAGGTAGAGAGATGAGAAAGTAGAAGATGGAAAAAGCTTGAATGGGCTGAACAATAACCTCTTTATATGTGGATTATGAAAATGTCAGATTTGTGTCTATGAACAGGCATTATATATACATATCCTACTTGCGTAATCTGATTATATCTAAACTGTACGATGAAGTTATGGGCTGTTACAACTCACGATGTGGATGGCAGGGGTTAACTTATTGAAATTAATGTTGTAATATACTGTACGATCAAGTTTATGCTCTGAAGATTTGACATCCGCCTGACTTTTAGTTATCCCGTGGCAGCATGTAGTATACTTTTTAGATTGATTTTAGGGGCCATGTTTTAGTGCTTCAGATTTAAAGACAACTAAAGTGTCTTCTTTGATTCAGGACAGGGAAACACGTGCGAAAACATAGTTAAAGGACCAGTTATTGGGGGCCCATTTTCTCTTATCGATACAGAGAAAAGAAATGTAACAGAGAAAGATCTTCGGGGGAACTGGACTCTGCTCTACTTTGGATACACTTCGTCTCCTGATGTTGTGCCAGAGCAACTCCAGATTATGTCCAAGGCTATAGACATATTAGGTATTCGACTACTTTAAAACATGCAACTTTGGATTATTGTTGCCGTGTACTTCCACTCTTGTTTTAATTACTTGTTTGTTGTTCTGTGAATAAGAATCTAGACATAAATTCAAGGTTCTACCTATATTCGTGACAATTGATCCACAACGGGATAACCCATCACATCTTCGTGCTTATCTTAAAGGTCAGTCTTTACCTCTTCATGAAGATTGTCAAGATAAATATATTTTGGCGGAGGTTTATCTTATCTTTCCTATCATTTATGGACTGCAGAGTTCGATTCAAGAATTATAGGACTAACTGGGCCAGTTGCAGCAGTAAGGCAAATGGCACAGGAATACCGAGTTTACTTTAAGAAGGTTGAGGAGGAAGGCAATGATTATCTTATCGATACTTCACACAAAATGTAAGCCACCTGACACAATCGAATCTACTTCTCATATTATGACTTGAACAATGTATTATGTATGTATGACGGGGAAAAACGATCAGGTATTTGTTGAGTCCAAACCTGGAGGTTTTGAGATGCTTTGGAATGGAGTACAATGCTGAAGAGGTTTCACAAGCCATACTGAACGTACTTCAGAAAACTCCTCAATAACGCCCTACAGGTCTTCAACTTCTCTCCTATGCATTCCTATTTGTTCTAAATTTCTTTTTAGTCATCCAGTAAAGCACTTGAGACGTCGGCTTAACATTATTACCTGAATTTGAACCCTTTAGAAGTCCATTCGTAGTACAATACGGTAAACAGAAAAGGCAATTTTTTTGTTCAGCAATTGTTTCAACTTTATAACTTGGGTATAGAATCACTATAATCCGTTGAACTCTCCAGCTTGCTTGATTATGATTCTTTGATTTAAAGATGGTTCGACTGCAGTCTTGAACCTCTTCTTTCATTTCTTTGTCTGCAATATAAAATAAACGGGAAATCACTATCCTCTCAGACCACGTATCTCAATTCTCGACCTGTTAGGTTCTTCATTGGTAAATCTTTGATCTAGAGCTTGTAGGAGAAGCAGGAATACCCATAGAAGATGATGATTTTGTTGGTCCTAAAGTACTGTAATGAATGAAATGCTGATTGATTTGATTTCATAATACTTCTACTATAAGAAACTTTATTTTGGCTTAGTTTGGTTTTGGATTGATGGAGAGAAATTACTGTAGGGGCAAGAATGTTGTGTTTACTTGAAAATGTATCAACATCTATAGCCACACCTAAGTCTGTTTATTAGT

Coding sequence (CDS)

ATGCTCACTTTTCGCTCTATTTTCTCAACCTCCAAACATCACTCCCGTCAGGCTCCATCTGTATTTCAAAGGTTACATCCATCAATTAGCGTTCTGTCCTGCAAATGTTCCACATCATCAAAATACAGCAAGGAAAGACCTGAAGTTCCTCTTCTATCCGCAGATGGACATACTTCTTCTTCATGGACTACTTATATCATTCCAGCTGCGGTGATGGGTTTTGTTGGGTTAGCAGCCTTTGTACATTATAACGATGAGAGAAGAGCTGTCTTGAAAGGACAGGGAAACACGTGCGAAAACATAGTTAAAGGACCAGTTATTGGGGGCCCATTTTCTCTTATCGATACAGAGAAAAGAAATGTAACAGAGAAAGATCTTCGGGGGAACTGGACTCTGCTCTACTTTGGATACACTTCGTCTCCTGATGTTGTGCCAGAGCAACTCCAGATTATGTCCAAGGCTATAGACATATTAGAATCTAGACATAAATTCAAGGTTCTACCTATATTCGTGACAATTGATCCACAACGGGATAACCCATCACATCTTCGTGCTTATCTTAAAGAGTTCGATTCAAGAATTATAGGACTAACTGGGCCAGTTGCAGCAGTAAGGCAAATGGCACAGGAATACCGAGTTTACTTTAAGAAGGTTGAGGAGGAAGGCAATGATTATCTTATCGATACTTCACACAAAATGTATTTGTTGAGTCCAAACCTGGAGGTTTTGAGATGCTTTGGAATGGAGTACAATGCTGAAGAGGTTTCACAAGCCATACTGAACGTACTTCAGAAAACTCCTCAATAA

Protein sequence

MLTFRSIFSTSKHHSRQAPSVFQRLHPSISVLSCKCSTSSKYSKERPEVPLLSADGHTSSSWTTYIIPAAVMGFVGLAAFVHYNDERRAVLKGQGNTCENIVKGPVIGGPFSLIDTEKRNVTEKDLRGNWTLLYFGYTSSPDVVPEQLQIMSKAIDILESRHKFKVLPIFVTIDPQRDNPSHLRAYLKEFDSRIIGLTGPVAAVRQMAQEYRVYFKKVEEEGNDYLIDTSHKMYLLSPNLEVLRCFGMEYNAEEVSQAILNVLQKTPQ

Homology

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BLAST of Cucsat.G2300 vs. ExPASy Swiss-Prot
Match: Q8LAL0 (Protein SCO1 homolog 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=HCC2 PE=2 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 1.5e-30
Identity = 77/169 (45.56%), Postives = 100/169 (59.17%), Query Frame = 0


Query: 1   MLTFRSIFSTSKHHSRQAPSVFQRLHPSISVLSCKCSTSSKYSKERPEV-PLLSADGHT- 60
           ML  R +  + K+   QA S  +R  PS  + S     S++   E P+V PL    G T 
Sbjct: 1   MLPCRRLVLSCKN---QAASFLRRCGPSKRIQSVNYCKSTRQGHEIPDVKPLFPTGGGTQ 60

Query: 61  --SSSWTTYIIPAAVMGFVGLAAFVHYNDERRAVLKGQGNT-------CENIVKGPVIGG 120
             S S   Y +PA ++GF G   F+HYNDERRAV +GQ ++           VKGP+IGG
Sbjct: 61  APSRSRARYAVPAILLGFAGFVGFLHYNDERRAVPRGQASSNSGCGCGSNTTVKGPIIGG 120

Query: 121 PFSLIDTEKRNVTEKDLRGNWTLLYFGYTSSPDVVPEQLQIMSKAIDIL 159
           PF+L+ TE + VTE D  G W LLYFGY+ SPDV PEQL++MSKA+D L
Sbjct: 121 PFTLVSTENKIVTENDFCGKWVLLYFGYSFSPDVGPEQLKMMSKAVDKL 166

[Close]

BLAST of Cucsat.G2300 vs. ExPASy Swiss-Prot
Match: O42899 (Protein sco1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=sco1 PE=3 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 4.8e-13
Identity = 44/135 (32.59%), Postives = 68/135 (50.37%), Query Frame = 0


Query: 42  YSKERPEVPL--------------LSADGHTSS--SWTTYIIPAAVM--GFVGLAAFVHY 101
           YS  RP  PL              L+ D  T +  SW   I   A++      +  + ++
Sbjct: 14  YSLIRPRFPLNRTCLARFADGRKNLATDNRTQTYQSWRGMISIRALLLAAATSVGLYAYF 73

Query: 102 NDERRAVLKGQGNTCENIVKGPVIGGPFSLIDTEKRNVTEKDLRGNWTLLYFGYTSSPDV 159
             E++ VL+ Q +     +  P +GG FSLID     VT+ D +G ++L+YFG+T  PD+
Sbjct: 74  QHEKKKVLERQNDKVLATIGRPQLGGAFSLIDHHGNRVTDNDFKGKFSLIYFGFTRCPDI 133

[Close]

BLAST of Cucsat.G2300 vs. ExPASy Swiss-Prot
Match: Q8VYP0 (Protein SCO1 homolog 1, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=HCC1 PE=1 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 6.9e-12
Identity = 35/101 (34.65%), Postives = 57/101 (56.44%), Query Frame = 0


Query: 61  SWTTYIIPAAVMGFVGLAAFVHYNDERRAVLKGQGNTCENIVKGP-----VIGGPFSLID 120
           SW ++ +  A     G     +Y+ +++  ++        + +GP      IGGPFSLI 
Sbjct: 126 SWMSFFLLFA----TGAGLVYYYDTQKKRHIEDINKNSIAVKEGPSAGKAAIGGPFSLIR 185

Query: 121 TEKRNVTEKDLRGNWTLLYFGYTSSPDVVPEQLQIMSKAID 157
            + + VTEK+L G WT+LYFG+T  PD+ P++L  ++ AID
Sbjct: 186 DDGKRVTEKNLMGKWTILYFGFTHCPDICPDELIKLAAAID 222

[Close]

BLAST of Cucsat.G2300 vs. ExPASy Swiss-Prot
Match: O75880 (Protein SCO1 homolog, mitochondrial OS=Homo sapiens OX=9606 GN=SCO1 PE=1 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.0e-10
Identity = 35/96 (36.46%), Postives = 52/96 (54.17%), Query Frame = 0


Query: 61  SWTTYIIPAAVMGFVGLAAFVHYNDERRAVLKGQGNTCENIVKGPVIGGPFSLIDTEKRN 120
           SW +  I  A+ G + LA   H   E+   L+ +    +  +  P++GGPFSL       
Sbjct: 94  SWKSLAITFAIGGAL-LAGMKHVKKEKAEKLEKER---QRHIGKPLLGGPFSLTTHTGER 153

Query: 121 VTEKDLRGNWTLLYFGYTSSPDVVPEQLQIMSKAID 157
            T+KD  G W L+YFG+T  PDV PE+L+ M + +D
Sbjct: 154 KTDKDYLGQWLLIYFGFTHCPDVCPEELEKMIQVVD 185

[Close]

BLAST of Cucsat.G2300 vs. ExPASy Swiss-Prot
Match: A1A4J8 (Protein SCO1 homolog, mitochondrial OS=Bos taurus OX=9913 GN=SCO1 PE=2 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 5.0e-10
Identity = 32/96 (33.33%), Postives = 53/96 (55.21%), Query Frame = 0


Query: 61  SWTTYIIPAAVMGFVGLAAFVHYNDERRAVLKGQGNTCENIVKGPVIGGPFSLIDTEKRN 120
           SW +  +  A+ G + LA   ++  E+   L+ + +     +  P++GGPFSL       
Sbjct: 98  SWKSLAVTFAIGGAL-LAGMKYFKKEKTEKLEKERH---RSIGKPLLGGPFSLTTHTGEP 157

Query: 121 VTEKDLRGNWTLLYFGYTSSPDVVPEQLQIMSKAID 157
            T+KD  G W L+YFG+T  PD+ PE+L+ M + +D
Sbjct: 158 KTDKDYLGQWVLIYFGFTHCPDICPEELEKMIQVVD 189

[Close]

BLAST of Cucsat.G2300 vs. NCBI nr
Match: XP_004143472.1 (protein SCO1 homolog 2, mitochondrial [Cucumis sativus] >KGN48759.1 hypothetical protein Csa_003251 [Cucumis sativus])

HSP 1 Score: 319 bits (818), Expect = 3.11e-108
Identity = 159/161 (98.76%), Postives = 159/161 (98.76%), Query Frame = 0


Query: 1   MLTFRSIFSTSKHHSRQAPSVFQRLHPSISVLSCKCSTSSKYSKERPEVPLLSADGHTSS 60
           MLTFRSIFSTSKHHSRQAPSVFQRLHPSISVLSCKCSTSSKYSKERPEVPLLSADGHTSS
Sbjct: 1   MLTFRSIFSTSKHHSRQAPSVFQRLHPSISVLSCKCSTSSKYSKERPEVPLLSADGHTSS 60

Query: 61  SWTTYIIPAAVMGFVGLAAFVHYNDERRAVLKGQGNTCENIVKGPVIGGPFSLIDTEKRN 120
           SWTTYIIPAAVMGFVGLAAFVHYNDERRAVLKGQGNTCENIVKGPVIGGPFSLIDTEKRN
Sbjct: 61  SWTTYIIPAAVMGFVGLAAFVHYNDERRAVLKGQGNTCENIVKGPVIGGPFSLIDTEKRN 120

Query: 121 VTEKDLRGNWTLLYFGYTSSPDVVPEQLQIMSKAIDILGIR 161
           VTEKDLRGNWTLLYFGYTSSPDVVPEQLQIMSKAIDIL  R
Sbjct: 121 VTEKDLRGNWTLLYFGYTSSPDVVPEQLQIMSKAIDILESR 161

[Close]

BLAST of Cucsat.G2300 vs. NCBI nr
Match: XP_008440607.1 (PREDICTED: protein SCO1 homolog 2, mitochondrial [Cucumis melo])

HSP 1 Score: 298 bits (763), Expect = 7.53e-100
Identity = 152/159 (95.60%), Postives = 153/159 (96.23%), Query Frame = 0


Query: 1   MLTFRSIFSTSKHHSRQAPSVFQRLHPSISVLSCKCSTSSKYSKERPEV-PLLSADGHTS 60
           MLTFRSIFSTSKHHSRQA SVFQRLHPSISVLSCK STSSKYSKERPEV  +LS DGHTS
Sbjct: 1   MLTFRSIFSTSKHHSRQARSVFQRLHPSISVLSCKYSTSSKYSKERPEVHSILSVDGHTS 60

Query: 61  SSWTTYIIPAAVMGFVGLAAFVHYNDERRAVLKGQGNTCENIVKGPVIGGPFSLIDTEKR 120
           SSWTTYIIPAAVMGFVGLAAFVHYNDERRAVLKGQGNTC NIVKGPVIGGPFSLIDTEKR
Sbjct: 61  SSWTTYIIPAAVMGFVGLAAFVHYNDERRAVLKGQGNTCVNIVKGPVIGGPFSLIDTEKR 120

Query: 121 NVTEKDLRGNWTLLYFGYTSSPDVVPEQLQIMSKAIDIL 158
           NVTEKDLRGNWTLLYFGYTSSPDVVPEQLQIMSKAIDIL
Sbjct: 121 NVTEKDLRGNWTLLYFGYTSSPDVVPEQLQIMSKAIDIL 159

[Close]

BLAST of Cucsat.G2300 vs. NCBI nr
Match: XP_038881278.1 (protein SCO1 homolog 2, mitochondrial [Benincasa hispida])

HSP 1 Score: 258 bits (659), Expect = 4.28e-84
Identity = 135/162 (83.33%), Postives = 142/162 (87.65%), Query Frame = 0


Query: 1   MLTFRSIFSTSKHHSRQAPSVFQRLHPSISVLSCKCSTSSKYSKERPEVP-LLSADGHTS 60
           MLTFR+IFS   +HSRQ  S+ QRLHP ISV SCK S+SSKYSKERPE+  LLS D HTS
Sbjct: 1   MLTFRTIFS---YHSRQTRSLLQRLHPLISVRSCKYSSSSKYSKERPEIHHLLSVDAHTS 60

Query: 61  SSWTTYIIPAAVMGFVGLAAFVHYNDERRAVLKGQGNTCENIVKGPVIGGPFSLIDTEKR 120
            SW TYIIPAAVMGFVGLAAFVHYNDERRAVLKGQGNT  N+VKGPVIGGPFSLIDTEKR
Sbjct: 61  PSWATYIIPAAVMGFVGLAAFVHYNDERRAVLKGQGNTSVNVVKGPVIGGPFSLIDTEKR 120

Query: 121 NVTEKDLRGNWTLLYFGYTSSPDVVPEQLQIMSKAIDILGIR 161
            VTEKDLRGNWTLLYFGYTSSPDVVPEQLQI+SKAIDIL  R
Sbjct: 121 IVTEKDLRGNWTLLYFGYTSSPDVVPEQLQIISKAIDILESR 159

[Close]

BLAST of Cucsat.G2300 vs. NCBI nr
Match: KAG6604025.1 (Protein SCO1-like 2, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia] >KAG7034189.1 Protein SCO1-like 2, mitochondrial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 255 bits (651), Expect = 8.00e-83
Identity = 131/162 (80.86%), Postives = 142/162 (87.65%), Query Frame = 0


Query: 1   MLTFRSIFSTSKHHSRQAPSVFQRLHPSISVLSCKCSTSSKYSKERPEV-PLLSADGHTS 60
           MLT RSIFS SK HS  A  + +RLHPSISV SC+ ST+SKY+KERPEV P++S D HTS
Sbjct: 1   MLTSRSIFSPSKLHSPHARCLLRRLHPSISVRSCRYSTASKYNKERPEVHPVISVDAHTS 60

Query: 61  SSWTTYIIPAAVMGFVGLAAFVHYNDERRAVLKGQGNTCENIVKGPVIGGPFSLIDTEKR 120
            SW TYIIPAAVMGFVGLAAFVHYNDERRAVLKGQG+T  N+VKGPVIGGPF+LIDTEKR
Sbjct: 61  RSWATYIIPAAVMGFVGLAAFVHYNDERRAVLKGQGSTSVNVVKGPVIGGPFALIDTEKR 120

Query: 121 NVTEKDLRGNWTLLYFGYTSSPDVVPEQLQIMSKAIDILGIR 161
            VTEKDLRGNWTLLYFGYTSSPDVVPEQLQIMSKAI+IL  R
Sbjct: 121 IVTEKDLRGNWTLLYFGYTSSPDVVPEQLQIMSKAINILESR 162

[Close]

BLAST of Cucsat.G2300 vs. NCBI nr
Match: XP_022949607.1 (protein SCO1 homolog 2, mitochondrial isoform X1 [Cucurbita moschata])

HSP 1 Score: 255 bits (651), Expect = 8.00e-83
Identity = 131/162 (80.86%), Postives = 142/162 (87.65%), Query Frame = 0


Query: 1   MLTFRSIFSTSKHHSRQAPSVFQRLHPSISVLSCKCSTSSKYSKERPEV-PLLSADGHTS 60
           MLT RSIFS SK HS  A  + +RLHPSISV SC+ ST+SKY+KERPEV P++S D HTS
Sbjct: 1   MLTSRSIFSPSKLHSPHARCLLRRLHPSISVRSCRYSTASKYNKERPEVHPVISVDAHTS 60

Query: 61  SSWTTYIIPAAVMGFVGLAAFVHYNDERRAVLKGQGNTCENIVKGPVIGGPFSLIDTEKR 120
            SW TYIIPAAVMGFVGLAAFVHYNDERRAVLKGQG+T  N+VKGPVIGGPF+LIDTEKR
Sbjct: 61  RSWATYIIPAAVMGFVGLAAFVHYNDERRAVLKGQGSTSVNVVKGPVIGGPFALIDTEKR 120

Query: 121 NVTEKDLRGNWTLLYFGYTSSPDVVPEQLQIMSKAIDILGIR 161
            VTEKDLRGNWTLLYFGYTSSPDVVPEQLQIMSKAI+IL  R
Sbjct: 121 IVTEKDLRGNWTLLYFGYTSSPDVVPEQLQIMSKAINILESR 162

[Close]

BLAST of Cucsat.G2300 vs. ExPASy TrEMBL
Match: A0A0A0KIW8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G500510 PE=3 SV=1)

HSP 1 Score: 319 bits (818), Expect = 1.50e-108
Identity = 159/161 (98.76%), Postives = 159/161 (98.76%), Query Frame = 0


Query: 1   MLTFRSIFSTSKHHSRQAPSVFQRLHPSISVLSCKCSTSSKYSKERPEVPLLSADGHTSS 60
           MLTFRSIFSTSKHHSRQAPSVFQRLHPSISVLSCKCSTSSKYSKERPEVPLLSADGHTSS
Sbjct: 1   MLTFRSIFSTSKHHSRQAPSVFQRLHPSISVLSCKCSTSSKYSKERPEVPLLSADGHTSS 60

Query: 61  SWTTYIIPAAVMGFVGLAAFVHYNDERRAVLKGQGNTCENIVKGPVIGGPFSLIDTEKRN 120
           SWTTYIIPAAVMGFVGLAAFVHYNDERRAVLKGQGNTCENIVKGPVIGGPFSLIDTEKRN
Sbjct: 61  SWTTYIIPAAVMGFVGLAAFVHYNDERRAVLKGQGNTCENIVKGPVIGGPFSLIDTEKRN 120

Query: 121 VTEKDLRGNWTLLYFGYTSSPDVVPEQLQIMSKAIDILGIR 161
           VTEKDLRGNWTLLYFGYTSSPDVVPEQLQIMSKAIDIL  R
Sbjct: 121 VTEKDLRGNWTLLYFGYTSSPDVVPEQLQIMSKAIDILESR 161

[Close]

BLAST of Cucsat.G2300 vs. ExPASy TrEMBL
Match: A0A1S3B131 (protein SCO1 homolog 2, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103484980 PE=3 SV=1)

HSP 1 Score: 298 bits (763), Expect = 3.65e-100
Identity = 152/159 (95.60%), Postives = 153/159 (96.23%), Query Frame = 0


Query: 1   MLTFRSIFSTSKHHSRQAPSVFQRLHPSISVLSCKCSTSSKYSKERPEV-PLLSADGHTS 60
           MLTFRSIFSTSKHHSRQA SVFQRLHPSISVLSCK STSSKYSKERPEV  +LS DGHTS
Sbjct: 1   MLTFRSIFSTSKHHSRQARSVFQRLHPSISVLSCKYSTSSKYSKERPEVHSILSVDGHTS 60

Query: 61  SSWTTYIIPAAVMGFVGLAAFVHYNDERRAVLKGQGNTCENIVKGPVIGGPFSLIDTEKR 120
           SSWTTYIIPAAVMGFVGLAAFVHYNDERRAVLKGQGNTC NIVKGPVIGGPFSLIDTEKR
Sbjct: 61  SSWTTYIIPAAVMGFVGLAAFVHYNDERRAVLKGQGNTCVNIVKGPVIGGPFSLIDTEKR 120

Query: 121 NVTEKDLRGNWTLLYFGYTSSPDVVPEQLQIMSKAIDIL 158
           NVTEKDLRGNWTLLYFGYTSSPDVVPEQLQIMSKAIDIL
Sbjct: 121 NVTEKDLRGNWTLLYFGYTSSPDVVPEQLQIMSKAIDIL 159

[Close]

BLAST of Cucsat.G2300 vs. ExPASy TrEMBL
Match: A0A6J1GCL0 (protein SCO1 homolog 2, mitochondrial isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111452949 PE=3 SV=1)

HSP 1 Score: 255 bits (651), Expect = 3.87e-83
Identity = 131/162 (80.86%), Postives = 142/162 (87.65%), Query Frame = 0


Query: 1   MLTFRSIFSTSKHHSRQAPSVFQRLHPSISVLSCKCSTSSKYSKERPEV-PLLSADGHTS 60
           MLT RSIFS SK HS  A  + +RLHPSISV SC+ ST+SKY+KERPEV P++S D HTS
Sbjct: 1   MLTSRSIFSPSKLHSPHARCLLRRLHPSISVRSCRYSTASKYNKERPEVHPVISVDAHTS 60

Query: 61  SSWTTYIIPAAVMGFVGLAAFVHYNDERRAVLKGQGNTCENIVKGPVIGGPFSLIDTEKR 120
            SW TYIIPAAVMGFVGLAAFVHYNDERRAVLKGQG+T  N+VKGPVIGGPF+LIDTEKR
Sbjct: 61  RSWATYIIPAAVMGFVGLAAFVHYNDERRAVLKGQGSTSVNVVKGPVIGGPFALIDTEKR 120

Query: 121 NVTEKDLRGNWTLLYFGYTSSPDVVPEQLQIMSKAIDILGIR 161
            VTEKDLRGNWTLLYFGYTSSPDVVPEQLQIMSKAI+IL  R
Sbjct: 121 IVTEKDLRGNWTLLYFGYTSSPDVVPEQLQIMSKAINILESR 162

[Close]

BLAST of Cucsat.G2300 vs. ExPASy TrEMBL
Match: A0A6J1ITF2 (protein SCO1 homolog 2, mitochondrial isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111478493 PE=3 SV=1)

HSP 1 Score: 252 bits (643), Expect = 6.35e-82
Identity = 130/162 (80.25%), Postives = 141/162 (87.04%), Query Frame = 0


Query: 1   MLTFRSIFSTSKHHSRQAPSVFQRLHPSISVLSCKCSTSSKYSKERPEV-PLLSADGHTS 60
           MLT RSIFS SK  S  A  + QRLHPSISV SC+ ST+SKY+KERPEV P++S D HTS
Sbjct: 1   MLTSRSIFSPSKLPSPHARCLLQRLHPSISVRSCRYSTTSKYNKERPEVHPVISVDAHTS 60

Query: 61  SSWTTYIIPAAVMGFVGLAAFVHYNDERRAVLKGQGNTCENIVKGPVIGGPFSLIDTEKR 120
            SW TYIIPAAVMGFVGLAAFVHYNDERRAVLKGQG+T  N+VKGPVIGGPF+LIDTEKR
Sbjct: 61  RSWATYIIPAAVMGFVGLAAFVHYNDERRAVLKGQGSTSVNVVKGPVIGGPFALIDTEKR 120

Query: 121 NVTEKDLRGNWTLLYFGYTSSPDVVPEQLQIMSKAIDILGIR 161
            VTEKDLRGNWTLLYFGYTSSPDVVPEQLQIMSKA++IL  R
Sbjct: 121 IVTEKDLRGNWTLLYFGYTSSPDVVPEQLQIMSKALNILESR 162

[Close]

BLAST of Cucsat.G2300 vs. ExPASy TrEMBL
Match: A0A6J1BW99 (protein SCO1 homolog 2, mitochondrial OS=Momordica charantia OX=3673 GN=LOC111005302 PE=3 SV=1)

HSP 1 Score: 224 bits (570), Expect = 7.85e-71
Identity = 118/163 (72.39%), Postives = 132/163 (80.98%), Query Frame = 0


Query: 1   MLTFRSIFSTSKHHSRQAPSVFQRLHPSISVLSCKCSTSSKYSKERPEV-PLLSADGHTS 60
           M  F SIF +SKHH RQA  + QR HPS SV SCK S SSKY+KE PEV PL+S D   S
Sbjct: 1   MPIFNSIFFSSKHHFRQARGLLQRFHPSNSVRSCKYSKSSKYNKEIPEVHPLISIDEQAS 60

Query: 61  SSWTTYIIPAAVMGFVGLAAFVHYNDERRAVLKGQGNTCE-NIVKGPVIGGPFSLIDTEK 120
            S  TY+IPAAVM FVGLAA VHYNDERRAVLKGQGN+ + N+V+GP+IGGPF+L DTE 
Sbjct: 61  RSRATYVIPAAVMSFVGLAALVHYNDERRAVLKGQGNSSDGNLVRGPIIGGPFTLTDTEN 120

Query: 121 RNVTEKDLRGNWTLLYFGYTSSPDVVPEQLQIMSKAIDILGIR 161
           R VTE++LRGNW+LLYFGYTSSPDVVPEQLQIMSKAIDIL  R
Sbjct: 121 RVVTEQNLRGNWSLLYFGYTSSPDVVPEQLQIMSKAIDILESR 163

[Close]

BLAST of Cucsat.G2300 vs. TAIR 10
Match: AT4G39740.1 (Thioredoxin superfamily protein )

HSP 1 Score: 134.0 bits (336), Expect = 1.1e-31
Identity = 77/169 (45.56%), Postives = 100/169 (59.17%), Query Frame = 0


Query: 1   MLTFRSIFSTSKHHSRQAPSVFQRLHPSISVLSCKCSTSSKYSKERPEV-PLLSADGHT- 60
           ML  R +  + K+   QA S  +R  PS  + S     S++   E P+V PL    G T 
Sbjct: 1   MLPCRRLVLSCKN---QAASFLRRCGPSKRIQSVNYCKSTRQGHEIPDVKPLFPTGGGTQ 60

Query: 61  --SSSWTTYIIPAAVMGFVGLAAFVHYNDERRAVLKGQGNT-------CENIVKGPVIGG 120
             S S   Y +PA ++GF G   F+HYNDERRAV +GQ ++           VKGP+IGG
Sbjct: 61  APSRSRARYAVPAILLGFAGFVGFLHYNDERRAVPRGQASSNSGCGCGSNTTVKGPIIGG 120

Query: 121 PFSLIDTEKRNVTEKDLRGNWTLLYFGYTSSPDVVPEQLQIMSKAIDIL 159
           PF+L+ TE + VTE D  G W LLYFGY+ SPDV PEQL++MSKA+D L
Sbjct: 121 PFTLVSTENKIVTENDFCGKWVLLYFGYSFSPDVGPEQLKMMSKAVDKL 166

[Close]

BLAST of Cucsat.G2300 vs. TAIR 10
Match: AT3G08950.1 (electron transport SCO1/SenC family protein )

HSP 1 Score: 72.0 bits (175), Expect = 4.9e-13
Identity = 35/101 (34.65%), Postives = 57/101 (56.44%), Query Frame = 0


Query: 61  SWTTYIIPAAVMGFVGLAAFVHYNDERRAVLKGQGNTCENIVKGP-----VIGGPFSLID 120
           SW ++ +  A     G     +Y+ +++  ++        + +GP      IGGPFSLI 
Sbjct: 126 SWMSFFLLFA----TGAGLVYYYDTQKKRHIEDINKNSIAVKEGPSAGKAAIGGPFSLIR 185

Query: 121 TEKRNVTEKDLRGNWTLLYFGYTSSPDVVPEQLQIMSKAID 157
            + + VTEK+L G WT+LYFG+T  PD+ P++L  ++ AID
Sbjct: 186 DDGKRVTEKNLMGKWTILYFGFTHCPDICPDELIKLAAAID 222

The following BLAST results are available for this feature:

BLAST of Cucsat.G2300 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LAL0	1.5e-30	45.56	Protein SCO1 homolog 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=HCC2 PE...	[more]
O42899	4.8e-13	32.59	Protein sco1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN...	[more]
Q8VYP0	6.9e-12	34.65	Protein SCO1 homolog 1, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=HCC1 PE...	[more]
O75880	1.0e-10	36.46	Protein SCO1 homolog, mitochondrial OS=Homo sapiens OX=9606 GN=SCO1 PE=1 SV=1	[more]
A1A4J8	5.0e-10	33.33	Protein SCO1 homolog, mitochondrial OS=Bos taurus OX=9913 GN=SCO1 PE=2 SV=1	[more]

BLAST of Cucsat.G2300 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004143472.1	3.11e-108	98.76	protein SCO1 homolog 2, mitochondrial [Cucumis sativus] >KGN48759.1 hypothetical...	[more]
XP_008440607.1	7.53e-100	95.60	PREDICTED: protein SCO1 homolog 2, mitochondrial [Cucumis melo]	[more]
XP_038881278.1	4.28e-84	83.33	protein SCO1 homolog 2, mitochondrial [Benincasa hispida]	[more]
KAG6604025.1	8.00e-83	80.86	Protein SCO1-like 2, mitochondrial, partial [Cucurbita argyrosperma subsp. soror...	[more]
XP_022949607.1	8.00e-83	80.86	protein SCO1 homolog 2, mitochondrial isoform X1 [Cucurbita moschata]	[more]

BLAST of Cucsat.G2300 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KIW8	1.50e-108	98.76	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G500510 PE=3 SV=1	[more]
A0A1S3B131	3.65e-100	95.60	protein SCO1 homolog 2, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103484980 PE...	[more]
A0A6J1GCL0	3.87e-83	80.86	protein SCO1 homolog 2, mitochondrial isoform X1 OS=Cucurbita moschata OX=3662 G...	[more]
A0A6J1ITF2	6.35e-82	80.25	protein SCO1 homolog 2, mitochondrial isoform X1 OS=Cucurbita maxima OX=3661 GN=...	[more]
A0A6J1BW99	7.85e-71	72.39	protein SCO1 homolog 2, mitochondrial OS=Momordica charantia OX=3673 GN=LOC11100...	[more]

BLAST of Cucsat.G2300 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G39740.1	1.1e-31	45.56	Thioredoxin superfamily protein	[more]
AT3G08950.1	4.9e-13	34.65	electron transport SCO1/SenC family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.40.30.10	Glutaredoxin	coord: 21..195 e-value: 6.2E-49 score: 167.9
None	No IPR available	PANTHER	PTHR12151:SF1	PROTEIN SCO1 HOMOLOG 2, MITOCHONDRIAL	coord: 2..195
IPR003782	Copper chaperone SCO1/SenC	PFAM	PF02630	SCO1-SenC	coord: 37..169 e-value: 2.8E-42 score: 143.9
IPR003782	Copper chaperone SCO1/SenC	PANTHER	PTHR12151	ELECTRON TRANSPORT PROTIN SCO1/SENC FAMILY MEMBER	coord: 2..195
IPR003782	Copper chaperone SCO1/SenC	CDD	cd02968	SCO	coord: 36..177 e-value: 1.23191E-59 score: 181.262
IPR036249	Thioredoxin-like superfamily	SUPERFAMILY	52833	Thioredoxin-like	coord: 34..193

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsat.G2300.T1	Cucsat.G2300.T1	mRNA
Cucsat.G2300.T3	Cucsat.G2300.T3	mRNA
Cucsat.G2300.T5	Cucsat.G2300.T5	mRNA
Cucsat.G2300.T2	Cucsat.G2300.T2	mRNA
Cucsat.G2300.T6	Cucsat.G2300.T6	mRNA
Cucsat.G2300.T4	Cucsat.G2300.T4	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055070	copper ion homeostasis
biological_process	GO:0033617	mitochondrial cytochrome c oxidase assembly
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005739	mitochondrion