Cucsat.G21348 (gene) Cucumber (B10) v3

Overview
NameCucsat.G21348
Typegene
OrganismCucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
DescriptionUnknown protein
Locationctg910: 1534035 .. 1535556 (+)
RNA-Seq ExpressionCucsat.G21348
SyntenyCucsat.G21348
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTCGGACACTCTCATCTTGCTCTTCTCCTACCTTCTAAAATTCATATCTCATGTAACTCTTCATATTTTTCCTCCCTCCCATCAATCTTTCTCAATCGGTGTTTAAATTTTCGTCTCTTTTCCTTAACATTACTTTTCTTGAAATTCTTGATCCTAAGTTTTGTTATTTTCATTTTATGATCAGATTTAATACACAGTCTCAGCTTCTGTTACATTCAACTCATTGGTCTCTGCGTTTGGGGAAGCTTAACTGCTCAAAGTTGTATAATACTATGCGTGGTGCAGCTGCCTTCTTGACTGTAAAGAACAAATCTAAACTGATCCATCCTCCGAAAGGATCATGGGGTATTGACCCTTCTCTTTGATTGATTAATCTTTCCATTTCTTTTTGGTAAATTACAAGATTGGCTCCTAAGTTTTCAGAGTTTTGTTGATTTTGTCTTTGTACCTTACAAAATTTCTAATAAGTTCTGAACTTGTAAAGTTAACTCCCTGTGTTTTAAAATGTTTTTTTAATTGATCTCGGAATCTCAATTTTGTATCTAATAGGTTAGGTTGTGATTTCGAAACACTTGCATGACACACATTTTTAAGGGTCTCTTAGTAGGTTGATTTTAGGTGTAAGCATTGAACAATAAAATTAGTGAAAATAAGTTTAGTGATTTGTTGAGTGCGAAAGTGAAAGTTAAAAAACTTATCAAGGTATATTAGTTAAACTTATAATTCAAGCATACAAATTTTGCTATCTATTTGAAGCTTTTTTAGTTTCTAAAGTACAAAGATTATGTTCACAAAAGTTAATGGACCAAACATATAATATAATTTTGCTATCTGTTTGGTTCGTTGCTTGAAACAATTGTTGGACTGCGATTTGATTAGGTAGTCTGACTTCCACAGTACAAAGGCAAGGAATGAAGAATGATTCTGAGGGAGAGTCTGTGGTTACAAAAGAGAAAGCTGACCCAATTGCAGCGTTCAGTAGGCCTCCACCACTCCCCCCCCTTCTTGGTCCATTGGCTGTTTTTTCATTGTTAGAAACATATTTGAGTCCTGATGGAAACGATGACTAGAACGGGATGTTTTGTAATACCTTTTGGCTGAGATCAAGTGTAGTATCTGTTCTAGAAGGGGATGTCTTGTATGTTCATTAACTGTACCATTTCCACGACCTCGCTATTACCATGTATGATATTTTCCTTGTTTGTGAAATAAAGTAAAATGAAGAGTACGTAAAAAAAAAGTGGAGACCCAAACGTATTAAAATCTTTAGAAAGGGCTTGCAAATGTTCCAGAGAAACTTGAAGAGAATTATACAGATCTTTGGCATCCACTTTACCCAACGTTGTTGAGAAACTTTTATCAGCCCTACAGGAGTTTATGTATTTTTAATGTTAAATAAGGAGCTTTTTTCATGAAGATCAATGGCATATGGTATTAATTTTGACTTACATTCATGGATTGCTGGATACTTAGTACGCAATAAAGTCACGAGCTTCATTATAGCCTGATATTAGTTATAGA

Coding sequence (CDS)

ATGATCAGATTTAATACACAGTCTCAGCTTCTGTTACATTCAACTCATTGGTCTCTGCGTTTGGGGAAGCTTAACTGCTCAAAGTTGTATAATACTATGCGTGGTGCAGCTGCCTTCTTGACTGTAAAGAACAAATCTAAACTGATCCATCCTCCGAAAGGATCATGGGGTAGTCTGACTTCCACAGTACAAAGGCAAGGAATGAAGAATGATTCTGAGGGAGAGTCTGTGGTTACAAAAGAGAAAGCTGACCCAATTGCAGCGTTCAGTAGGCCTCCACCACTCCCCCCCCTTCTTGGTCCATTGGCTGTTTTTTCATTGTTAGAAACATATTTGAGTCCTGATGGAAACGATGACTAG

Protein sequence

MIRFNTQSQLLLHSTHWSLRLGKLNCSKLYNTMRGAAAFLTVKNKSKLIHPPKGSWGSLTSTVQRQGMKNDSEGESVVTKEKADPIAAFSRPPPLPPLLGPLAVFSLLETYLSPDGNDD
Homology
BLAST of Cucsat.G21348 vs. NCBI nr
Match: KAA0042731.1 (hypothetical protein E6C27_scaffold44G002300 [Cucumis melo var. makuwa])

HSP 1 Score: 166 bits (420), Expect = 5.53e-51
Identity = 82/87 (94.25%), Postives = 83/87 (95.40%), Query Frame = 0

Query: 33  MRGAAAFLTVKNKSKLIHPPKGSWGSLTSTVQRQGMKNDSEGESVVTKEKADPIAAFSRP 92
           MRGAAA LTVKNK KLIHP KGSWGSLTSTVQRQGMKNDSEGESVVTKEKADPIAAFS+P
Sbjct: 1   MRGAAALLTVKNKPKLIHPTKGSWGSLTSTVQRQGMKNDSEGESVVTKEKADPIAAFSKP 60

Query: 93  PPLPPLLGPLAVFSLLETYLSPDGNDD 119
           PPLPPLLGPLAV SLLETYLSPDGNDD
Sbjct: 61  PPLPPLLGPLAVLSLLETYLSPDGNDD 87

BLAST of Cucsat.G21348 vs. NCBI nr
Match: KAE8647849.1 (hypothetical protein Csa_000256 [Cucumis sativus])

HSP 1 Score: 159 bits (403), Expect = 1.81e-48
Identity = 81/87 (93.10%), Postives = 81/87 (93.10%), Query Frame = 0

Query: 33  MRGAAAFLTVKNKSKLIHPPKGSWGSLTSTVQRQGMKNDSEGESVVTKEKADPIAAFSRP 92
           MRGAAAFLTVKNKSKLIHPPKGSW      VQRQGMKNDSEGESVVTKEKADPIAAFSRP
Sbjct: 1   MRGAAAFLTVKNKSKLIHPPKGSW------VQRQGMKNDSEGESVVTKEKADPIAAFSRP 60

Query: 93  PPLPPLLGPLAVFSLLETYLSPDGNDD 119
           PPLPPLLGPLAVFSLLETYLSPDGNDD
Sbjct: 61  PPLPPLLGPLAVFSLLETYLSPDGNDD 81

BLAST of Cucsat.G21348 vs. NCBI nr
Match: CBI34376.3 (unnamed protein product, partial [Vitis vinifera])

HSP 1 Score: 105 bits (262), Expect = 6.38e-27
Identity = 53/88 (60.23%), Postives = 63/88 (71.59%), Query Frame = 0

Query: 33  MRGAAAFLTVKNKSKLIHPPKGSWGSL-TSTVQRQGMKNDSEGESVVTKEKADPIAAFSR 92
           MRG AA L  KNK K I+PPKG+WGS  TST++R+G  ND   +  +T EK DPI AFS+
Sbjct: 1   MRGTAALLPAKNKLKQIYPPKGTWGSASTSTLKREG-NNDFREQGTITNEKIDPIVAFSK 60

Query: 93  PPPLPPLLGPLAVFSLLETYLSPDGNDD 119
           PPPLPP+LGPL   SLLE + S D NDD
Sbjct: 61  PPPLPPVLGPLVALSLLEAWWSRDSNDD 87

BLAST of Cucsat.G21348 vs. NCBI nr
Match: PRQ17609.1 (hypothetical protein RchiOBHm_Chr7g0196851 [Rosa chinensis])

HSP 1 Score: 97.4 bits (241), Expect = 9.90e-24
Identity = 52/88 (59.09%), Postives = 61/88 (69.32%), Query Frame = 0

Query: 33  MRGAAAFLTVKNKSKLIHPPKGSWGSL-TSTVQRQGMKNDSEGESVVTKEKADPIAAFSR 92
           MRG AA   VKN+ K IHP KGSWG++ TST  +QG  N  E   +VTKEK DPI  FSR
Sbjct: 1   MRGVAALSPVKNRFKQIHPIKGSWGTVVTSTSNKQGNSNYGEA-GLVTKEKTDPIVVFSR 60

Query: 93  PPPLPPLLGPLAVFSLLETYLSPDGNDD 119
           PPPLPP++GPL V SLLE   S + +DD
Sbjct: 61  PPPLPPVIGPLLVLSLLEASWSRNNDDD 87

BLAST of Cucsat.G21348 vs. NCBI nr
Match: XP_015896471.1 (uncharacterized protein LOC107430187 [Ziziphus jujuba])

HSP 1 Score: 94.4 bits (233), Expect = 1.67e-22
Identity = 49/88 (55.68%), Postives = 59/88 (67.05%), Query Frame = 0

Query: 33  MRGAAAFLTVKNKSKLIHPPKGSWGSL-TSTVQRQGMKNDSEGESVVTKEKADPIAAFSR 92
           MRG AA    KNK K I+P KGSWG+  TST ++Q      E    VTKEK  P+ AFSR
Sbjct: 1   MRGIAALTPAKNKFKQIYPLKGSWGNAATSTPKKQRNNEPGEERGPVTKEKDVPVVAFSR 60

Query: 93  PPPLPPLLGPLAVFSLLETYLSPDGNDD 119
           PPPLPP++GPL + SLLET+   DGND+
Sbjct: 61  PPPLPPVVGPLVLLSLLETWSGRDGNDN 88

BLAST of Cucsat.G21348 vs. ExPASy TrEMBL
Match: A0A0A0KKH2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G152830 PE=4 SV=1)

HSP 1 Score: 177 bits (448), Expect = 1.44e-55
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0

Query: 33  MRGAAAFLTVKNKSKLIHPPKGSWGSLTSTVQRQGMKNDSEGESVVTKEKADPIAAFSRP 92
           MRGAAAFLTVKNKSKLIHPPKGSWGSLTSTVQRQGMKNDSEGESVVTKEKADPIAAFSRP
Sbjct: 1   MRGAAAFLTVKNKSKLIHPPKGSWGSLTSTVQRQGMKNDSEGESVVTKEKADPIAAFSRP 60

Query: 93  PPLPPLLGPLAVFSLLETYLSPDGNDD 119
           PPLPPLLGPLAVFSLLETYLSPDGNDD
Sbjct: 61  PPLPPLLGPLAVFSLLETYLSPDGNDD 87

BLAST of Cucsat.G21348 vs. ExPASy TrEMBL
Match: A0A5A7TME5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold44G002300 PE=4 SV=1)

HSP 1 Score: 166 bits (420), Expect = 2.68e-51
Identity = 82/87 (94.25%), Postives = 83/87 (95.40%), Query Frame = 0

Query: 33  MRGAAAFLTVKNKSKLIHPPKGSWGSLTSTVQRQGMKNDSEGESVVTKEKADPIAAFSRP 92
           MRGAAA LTVKNK KLIHP KGSWGSLTSTVQRQGMKNDSEGESVVTKEKADPIAAFS+P
Sbjct: 1   MRGAAALLTVKNKPKLIHPTKGSWGSLTSTVQRQGMKNDSEGESVVTKEKADPIAAFSKP 60

Query: 93  PPLPPLLGPLAVFSLLETYLSPDGNDD 119
           PPLPPLLGPLAV SLLETYLSPDGNDD
Sbjct: 61  PPLPPLLGPLAVLSLLETYLSPDGNDD 87

BLAST of Cucsat.G21348 vs. ExPASy TrEMBL
Match: D7TV51 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_02s0025g00230 PE=4 SV=1)

HSP 1 Score: 105 bits (262), Expect = 3.09e-27
Identity = 53/88 (60.23%), Postives = 63/88 (71.59%), Query Frame = 0

Query: 33  MRGAAAFLTVKNKSKLIHPPKGSWGSL-TSTVQRQGMKNDSEGESVVTKEKADPIAAFSR 92
           MRG AA L  KNK K I+PPKG+WGS  TST++R+G  ND   +  +T EK DPI AFS+
Sbjct: 1   MRGTAALLPAKNKLKQIYPPKGTWGSASTSTLKREG-NNDFREQGTITNEKIDPIVAFSK 60

Query: 93  PPPLPPLLGPLAVFSLLETYLSPDGNDD 119
           PPPLPP+LGPL   SLLE + S D NDD
Sbjct: 61  PPPLPPVLGPLVALSLLEAWWSRDSNDD 87

BLAST of Cucsat.G21348 vs. ExPASy TrEMBL
Match: A0A2P6P6R2 (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr7g0196851 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 4.79e-24
Identity = 52/88 (59.09%), Postives = 61/88 (69.32%), Query Frame = 0

Query: 33  MRGAAAFLTVKNKSKLIHPPKGSWGSL-TSTVQRQGMKNDSEGESVVTKEKADPIAAFSR 92
           MRG AA   VKN+ K IHP KGSWG++ TST  +QG  N  E   +VTKEK DPI  FSR
Sbjct: 1   MRGVAALSPVKNRFKQIHPIKGSWGTVVTSTSNKQGNSNYGEA-GLVTKEKTDPIVVFSR 60

Query: 93  PPPLPPLLGPLAVFSLLETYLSPDGNDD 119
           PPPLPP++GPL V SLLE   S + +DD
Sbjct: 61  PPPLPPVIGPLLVLSLLEASWSRNNDDD 87

BLAST of Cucsat.G21348 vs. ExPASy TrEMBL
Match: A0A2N9IQZ8 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS17274 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 5.54e-23
Identity = 46/87 (52.87%), Postives = 59/87 (67.82%), Query Frame = 0

Query: 33  MRGAAAFLTVKNKSKLIHPPKGSWGSLTSTVQRQGMKNDSEGESVVTKEKADPIAAFSRP 92
           MRG A F   K K K I+P  GSWG++ +++ ++   N++  E  +TKEK  PI AFSRP
Sbjct: 1   MRGTAVFSPAKYKFKQIYPIAGSWGTVATSMPKKQENNNTGKEGPITKEKNGPIVAFSRP 60

Query: 93  PPLPPLLGPLAVFSLLETYLSPDGNDD 119
           PPLPP+LGPL   SLLET+ S D NDD
Sbjct: 61  PPLPPVLGPLVALSLLETWSSRDSNDD 87

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAA0042731.15.53e-5194.25hypothetical protein E6C27_scaffold44G002300 [Cucumis melo var. makuwa][more]
KAE8647849.11.81e-4893.10hypothetical protein Csa_000256 [Cucumis sativus][more]
CBI34376.36.38e-2760.23unnamed protein product, partial [Vitis vinifera][more]
PRQ17609.19.90e-2459.09hypothetical protein RchiOBHm_Chr7g0196851 [Rosa chinensis][more]
XP_015896471.11.67e-2255.68uncharacterized protein LOC107430187 [Ziziphus jujuba][more]
Match NameE-valueIdentityDescription
A0A0A0KKH21.44e-55100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G152830 PE=4 SV=1[more]
A0A5A7TME52.68e-5194.25Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
D7TV513.09e-2760.23Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_02s0025g00230 PE=4 SV=... [more]
A0A2P6P6R24.79e-2459.09Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr7g0196851 PE=4... [more]
A0A2N9IQZ85.54e-2352.87Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS17274 PE=4 SV=1[more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 55..73
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 53..79

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsat.G21348.T5Cucsat.G21348.T5mRNA