Cucsat.G21334 (gene) Cucumber (B10) v3

Overview
NameCucsat.G21334
Typegene
OrganismCucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
DescriptionPectin lyase-like superfamily protein
Locationctg910: 1261629 .. 1263840 (+)
RNA-Seq ExpressionCucsat.G21334
SyntenyCucsat.G21334
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CATATATTCTACCTTCGTTGGTTTTTTCTTCCATATCTTTTCTTAGATTTTTATTTTTAAAATCGTGGGTAGAATGTAGATAACATCTGAACAAAGTTGATTTTTTAATTTGGAAGAAGATAATGAAGCATCCAACCATAACTTCAACCCATATATCATATAATAAAATTTCTTCCTCTCAAAACGCAAAGTGGGGGCCAGAGCGCTAAAATCAAAAGCATTTCTTTTCCTTACAAACAAACTTAATCACACACTTAAAGCCTCCTTACTCATTCTTCTCTTTCTTCCTCCCCATTTTCTTCCATTAATTACTTAAATCTTTTCTCCATTTCCACTTCCTTCTTGGATCTTTCTCCTTGTTTTCACTCTCAGATCTACTCCCATCCTTCTTCTTCTTTAAATCCTTACATAATTCCCCCTAAAAAGCTTCTCTCAACTCCTTTCTCCTTGTTTTCTTTCCCATTTCTTCACAATGCTCCCCTTTCCCCTCTTCATTTTCATCTTCTTCACTACCCTTTTCCCCTCTCCTCTCGCCGTCGCCGACCTCACTACCTGCTCCGGTATAGTCCCCATGAAGTACAGGAACGACAAGATTTCCATTGCCGACTTTGGTGGAATCGGCGATGGTCGAACATTGAATACCAGAGCCTTTCGAGCTGCCATTTATCGGATTCAGCATTTGAGGAGACGAGGGGGTACTTTGCTTTACATTCCTCCGGGGGTTTACTTGACCGAGACCTTCAATCTCACTAGCCATATGACTCTCTATCTTGCTAAAGGCGCTGTTATCAAAGCTGTTCAGGTATTTACATCTCTCTCAAGTCTCAACTCAACCGAACTTCATCCTTCTTTTCCTAGTTTGTGATTTGTGTGGTTGTTCATGTTTAGGGTCTTTGTTTGTGTGTTTTTTTAATCGTCAATTCTGACATTGAGCTTGTTTTTGTTGGAGATTGGTATGAAATCCAGAAACAAATAAAACAGAAAATGTAAACGGGAGAGAATCGACACAGAGGTTACATGGTTGACTAACAGTGTAGCTAGGTTCATGGCAGTGAGAGAACAATTCTCAATTTATTATTATTAGAGTGAAAATCTTATATTACAGATTTAGGAGGACCAGTAGTGTTATAAAATTTCTATATTGCACTCTTCTTTAACTTCAGAACCTGAGTCGTAAATAACATAAATAATGTGGAATAACAAATTCAAAACATTCATAATGATAATGGTTTCTAAATTAGAGGATTGGGATTTATGAGAATGAATGTGGGTCCTGAATGGAAATTGCAAGAAGTGGTGGGTGGGTCTTTGATTTAAGCTGTGGCATGTGCATCCACTCTAAATTAATACTATGATATATGATTGGACCCTTGACAGGCTGTTCTTTGTCAGCCTCTGATGCTAACTTTTAATTAGAATATGATCCCATTTTAGTTGATTGGTCAATTCACAGCTCAAAATTGCTAATTTGTGATTGTTATTCTACTGATCTGGACATCAATTTCATGCAAACAAAATTGGTTGTCAGTTAGTTCATGTTCAAATATCTAATGTGTAAACTATGTCAAAAAATTGGTAGGCCTTAAATTACAATGATAATGACAACGTTGTTAACGAGTGATAGTAATTAGTCTTAAATTTGCTAGGATACCCCATAACGTGAAAACTCAAGAAGCACACAGATAGTTATTCGTTGCAATATCAAGAGAAGTTACGATATACCATAGCCTTTCTAGAGGCCTATCTTAGTCTCTCCAAGTCCCACAATGGAAGCTTTCACCAAAAATAGTCTCCTAAGGCCCCTATCTCCCTTTGTTTAAGATCAAGTCTCTCCTGGCTAACCTATTTACTACACTCACAACATCATGTTTATTTCTGCTAGCAGAAAGAAAAAAGGGGGTCTAGTTTATGCTTTTTGATCTTTTTGAAATTAGAACGTCTCTACTATCCTTCCTATGAAGTGATTTGCTGATGATCATGAGACTTGTCCGACATCTGTAAATTTTCTAATATGCTAAATAGCTGAAGATTCTTTCACTTTACTTGCATCATGCAAATTTCTTTAGTAAGCTTGTGGTTTTCGATTGATTGTCCAGGATTCTTCAAATTGGCCAGTAATAGCTCCGTTGCCATCTTATGGAAGAGGGAGAGAGCGCCCTGGAGGAAGATATATAAGCCTTATCCATGGAGATGGTGTTCATGATGTGGTGATCACTGGTATGAATCATCAAGTTCTTTTAAATATGAAAGATATCACAACCTTGGGTTACCTGTGCTGTTTTTGGAAAAGTTATGGATATTGATAGCCTGAGTAAAATTGTTATCTTAGGTGAGAATGGGACTATTGATGGCCAAGGTGATGCCTGGTGGAATATGTGGAGGACAGGAACTCTGAAGTACACTAGGCCTAGTCTTGTTGAATTTGTCAATTCATACAATATCATCATATCCAATGTAATGTTCCTGAATTCTCCGTTTTGGAACATTCACCCTGTTTACTGCCGGTAAGAATTGAAGTCTTATCATCAATCTTGTTACAGCTCCATATAATTGCTCCAAGCTCCGTTGTATAGTTCTATCATGCATTTTTATCTTCTATTGCAGGAATGTTGTTGTCAGATATGTCACAATATTGGCTCCTCGTGATTCCCCTAACACCGATGGAGTTGATCCAGGTGCACTTTCGGATTCTTTGGTGCTTCATTGTTCTGATTACAAGAGCTAAACAAACTTGTTAAAACAAGTGCTTATTGTAAATCATGTTCAAAATTCTCATTATATTAGCTTTGTATATCCTTAAAAGTAACAAAACTTGCAAACTGATGCTCCACAGATTCAAGCAATAACGTTTGCATAGAAGATTCCTACATTTCAACTGGAGATGATCTTGTAGCTGTGAAGAGTGGGTGGGATGAATACGGTATTGCTTATGGTCGCTGTAGTTACGACATTACCATCCGAAGAATTTCGGGGTCTAGTCCATTTGCTGGAGTTGCAGTTGGAAGTGAAGCCTCTGGTGGAGTGGCAAATGTATTGGCAGAACACCTGAACTTTTACGATATGGGAGTTGGTATCAACATCAAGACAAACATCGGAAGGGGAGGGTTCATAAAGAACATAACTGTGTCCAATGTCTACATGGAGAATTCAAGAAAGGGTCTAAAGATTGCTGGCGATGCCGGAGATCATCCCGACGACAAGTTCGACCCAAATGCTCTTCCTATTGTCAAAGACATCACAATTAAAAATATTTGGGGCGTGAATGTACAGCAAGCTGGTTCTATATATGGCTTGAGAGACTCTCCATTTACTGGTATATGTCTTTCGAACATCAACCTTCGCGGTGCGACAAGGCCAAGATCAGTACCGTGGACTTGCTCGTATGTAAGTGGTGCAGCTTCTTTGGTTAGTCCATGGCCGTGCTCGGAGCTCACCAGCACAGACCAAGATGGCCTGTGCTCTGATAATTTCTAAATACATGTACTTCATATATTTTGTTCTTTAAACTTGTGAAATTTTCACATTCTCAGTTTGTAGCATCTATATTTTATTTGTCTTGAAAGTGTTTACGAAGATGTTCAATATCATAATGGAAGTATCGAATATATTAAAATTTGAACTTGTTCTACGGAAAGTTAGACTAAAATGTAATGAGACTCAAAGTGTAGGGCCTAAAGACAGGTATTTTAACCCAAGAAAATTAAAAAATAAGTCCATTGTTTTGCCTTTTTTA

Coding sequence (CDS)

ATGCTCCCCTTTCCCCTCTTCATTTTCATCTTCTTCACTACCCTTTTCCCCTCTCCTCTCGCCGTCGCCGACCTCACTACCTGCTCCGGTATAGTCCCCATGAAGTACAGGAACGACAAGATTTCCATTGCCGACTTTGGTGGAATCGGCGATGGTCGAACATTGAATACCAGAGCCTTTCGAGCTGCCATTTATCGGATTCAGCATTTGAGGAGACGAGGGGGTACTTTGCTTTACATTCCTCCGGGGGTTTACTTGACCGAGACCTTCAATCTCACTAGCCATATGACTCTCTATCTTGCTAAAGGCGCTGTTATCAAAGCTGTTCAGGATTCTTCAAATTGGCCAGTAATAGCTCCGTTGCCATCTTATGGAAGAGGGAGAGAGCGCCCTGGAGGAAGATATATAAGCCTTATCCATGGAGATGGTGTTCATGATGTGGTGATCACTGGTATGAATCATCAAGTTCTTTTAAATATGAAAGATATCACAACCTTGGGTTACCTGTGCTGTTTTTGGAAAAGTTATGGATATTGA

Protein sequence

MLPFPLFIFIFFTTLFPSPLAVADLTTCSGIVPMKYRNDKISIADFGGIGDGRTLNTRAFRAAIYRIQHLRRRGGTLLYIPPGVYLTETFNLTSHMTLYLAKGAVIKAVQDSSNWPVIAPLPSYGRGRERPGGRYISLIHGDGVHDVVITGMNHQVLLNMKDITTLGYLCCFWKSYGY
Homology
[Close]
BLAST of Cucsat.G21334 vs. ExPASy Swiss-Prot
Match: A7PZL3 (Probable polygalacturonase OS=Vitis vinifera OX=29760 GN=GSVIVT00026920001 PE=1 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 1.3e-24
Identity = 52/133 (39.10%), Postives = 81/133 (60.90%), Query Frame = 0 

Query: 4   GINIKTNIGRGGFIKNITVSNVYMENSRKGLKIAGDAGDHPDDKFDPNALPIVKDITIKN 63
           GI IKT IGRGG++K+I V  + M+  +    + G+ G H D+ +DP A P+++ I  ++
Sbjct: 335 GIRIKTGIGRGGYVKDIYVRGMTMKTMKWAFWMTGNYGSHADNHYDPKAFPVIQGINYRD 394

Query: 64  IWGVNVQQAGSIYGLRDSPFTGICLSNINLRGATRPRSVPWTCSYVSGAASLVSPWPCSE 123
           +   NV  A  + G+   PFTGIC+SN+ +  A + + VPWTC+ V G +S V+P PCS 
Sbjct: 395 MVAENVSMAARLEGIPSDPFTGICISNVTIHLAAKAKKVPWTCTDVEGISSGVTPTPCST 454

Query: 124 L--TSTDQDGLCS 135
           L     ++  LC+
Sbjct: 455 LPDQGPEKTSLCN 467

[Close]
BLAST of Cucsat.G21334 vs. NCBI nr
Match: XP_004143871.1 (probable polygalacturonase [Cucumis sativus] >KGN50025.1 hypothetical protein Csa_000391 [Cucumis sativus])

HSP 1 Score: 286 bits (733), Expect = 2.38e-93
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 0 

Query: 1   MGVGINIKTNIGRGGFIKNITVSNVYMENSRKGLKIAGDAGDHPDDKFDPNALPIVKDIT 60
           MGVGINIKTNIGRGGFIKNITVSNVYMENSRKGLKIAGDAGDHPDDKFDPNALPIVKDIT
Sbjct: 309 MGVGINIKTNIGRGGFIKNITVSNVYMENSRKGLKIAGDAGDHPDDKFDPNALPIVKDIT 368

Query: 61  IKNIWGVNVQQAGSIYGLRDSPFTGICLSNINLRGATRPRSVPWTCSYVSGAASLVSPWP 120
           IKNIWGVNVQQAGSIYGLRDSPFTGICLSNINLRGATRPRSVPWTCSYVSGAASLVSPWP
Sbjct: 369 IKNIWGVNVQQAGSIYGLRDSPFTGICLSNINLRGATRPRSVPWTCSYVSGAASLVSPWP 428

Query: 121 CSELTSTDQDGLCSDNF 137
           CSELTSTDQDGLCSDNF
Sbjct: 429 CSELTSTDQDGLCSDNF 445

[Close]
BLAST of Cucsat.G21334 vs. NCBI nr
Match: XP_008437386.1 (PREDICTED: probable polygalacturonase [Cucumis melo] >KAA0042687.1 putative polygalacturonase [Cucumis melo var. makuwa] >TYK06090.1 putative polygalacturonase [Cucumis melo var. makuwa])

HSP 1 Score: 273 bits (698), Expect = 4.57e-88
Identity = 129/137 (94.16%), Postives = 131/137 (95.62%), Query Frame = 0 

Query: 1   MGVGINIKTNIGRGGFIKNITVSNVYMENSRKGLKIAGDAGDHPDDKFDPNALPIVKDIT 60
           MGVGINIKTNIGRGGFIKNITVSNVYMENSRKGLKIAGD GDHPDDKFDPNALPIVKDIT
Sbjct: 309 MGVGINIKTNIGRGGFIKNITVSNVYMENSRKGLKIAGDTGDHPDDKFDPNALPIVKDIT 368

Query: 61  IKNIWGVNVQQAGSIYGLRDSPFTGICLSNINLRGATRPRSVPWTCSYVSGAASLVSPWP 120
           IKN WGV VQQAGSIYGLRDSPFTGICLSNIN RG TRPRSVPWTCSYVSGAA +VSPWP
Sbjct: 369 IKNAWGVKVQQAGSIYGLRDSPFTGICLSNINFRGTTRPRSVPWTCSYVSGAALMVSPWP 428

Query: 121 CSELTSTDQDGLCSDNF 137
           CSELTST+QDGLCSDNF
Sbjct: 429 CSELTSTEQDGLCSDNF 445

[Close]
BLAST of Cucsat.G21334 vs. NCBI nr
Match: XP_022146051.1 (probable polygalacturonase [Momordica charantia])

HSP 1 Score: 271 bits (693), Expect = 1.00e-87
Identity = 128/137 (93.43%), Postives = 131/137 (95.62%), Query Frame = 0 

Query: 1   MGVGINIKTNIGRGGFIKNITVSNVYMENSRKGLKIAGDAGDHPDDKFDPNALPIVKDIT 60
           MGVGINIKTNIGRGGFIKNITVSNVYME SRKGLKIAGD GDHPDDKFDPNALPIVKDIT
Sbjct: 276 MGVGINIKTNIGRGGFIKNITVSNVYMERSRKGLKIAGDTGDHPDDKFDPNALPIVKDIT 335

Query: 61  IKNIWGVNVQQAGSIYGLRDSPFTGICLSNINLRGATRPRSVPWTCSYVSGAASLVSPWP 120
           IKN+WGVNVQQAGSIYGL++SPFTGICLSNINL G TRPRSVPWTCSYVSGAA LVSPWP
Sbjct: 336 IKNVWGVNVQQAGSIYGLKNSPFTGICLSNINLHGTTRPRSVPWTCSYVSGAALLVSPWP 395

Query: 121 CSELTSTDQDGLCSDNF 137
           CSELTST QDGLCSDNF
Sbjct: 396 CSELTSTQQDGLCSDNF 412

[Close]
BLAST of Cucsat.G21334 vs. NCBI nr
Match: XP_038876129.1 (probable polygalacturonase [Benincasa hispida])

HSP 1 Score: 269 bits (688), Expect = 1.47e-86
Identity = 127/137 (92.70%), Postives = 132/137 (96.35%), Query Frame = 0 

Query: 1   MGVGINIKTNIGRGGFIKNITVSNVYMENSRKGLKIAGDAGDHPDDKFDPNALPIVKDIT 60
           MGVGINIKTNIGRGGFI+NITVSNVYME+SRKGLKIAGD GDHPDDK+DPNALPIVKDIT
Sbjct: 309 MGVGINIKTNIGRGGFIRNITVSNVYMESSRKGLKIAGDTGDHPDDKYDPNALPIVKDIT 368

Query: 61  IKNIWGVNVQQAGSIYGLRDSPFTGICLSNINLRGATRPRSVPWTCSYVSGAASLVSPWP 120
           IKN+WG NVQQAGSIYGLR+SPFTGICLSNINLRGA RPRSVPWTCSYVSGAA LVSPWP
Sbjct: 369 IKNVWGENVQQAGSIYGLRNSPFTGICLSNINLRGARRPRSVPWTCSYVSGAALLVSPWP 428

Query: 121 CSELTSTDQDGLCSDNF 137
           CSELTST QDGLCSDNF
Sbjct: 429 CSELTSTQQDGLCSDNF 445

[Close]
BLAST of Cucsat.G21334 vs. NCBI nr
Match: XP_023534421.1 (probable polygalacturonase isoform X1 [Cucurbita pepo subsp. pepo] >XP_023534422.1 probable polygalacturonase isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 266 bits (680), Expect = 2.37e-85
Identity = 125/137 (91.24%), Postives = 131/137 (95.62%), Query Frame = 0 

Query: 1   MGVGINIKTNIGRGGFIKNITVSNVYMENSRKGLKIAGDAGDHPDDKFDPNALPIVKDIT 60
           MGVGINIKTNIGRGGFIKNIT+S+VYME+SRKGLKIA D GDHPDDKFDPNALPIVKDIT
Sbjct: 309 MGVGINIKTNIGRGGFIKNITISDVYMESSRKGLKIASDTGDHPDDKFDPNALPIVKDIT 368

Query: 61  IKNIWGVNVQQAGSIYGLRDSPFTGICLSNINLRGATRPRSVPWTCSYVSGAASLVSPWP 120
           IKN+WGVNVQQAGSIYGLR+SPFTGICLSNINLRG  RPRSVPWTCSYVSGAA LVSPWP
Sbjct: 369 IKNVWGVNVQQAGSIYGLRNSPFTGICLSNINLRGTARPRSVPWTCSYVSGAALLVSPWP 428

Query: 121 CSELTSTDQDGLCSDNF 137
           CSELTST QDGLCS+NF
Sbjct: 429 CSELTSTQQDGLCSNNF 445

[Close]
BLAST of Cucsat.G21334 vs. ExPASy TrEMBL
Match: A0A0A0KK36 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G150430 PE=3 SV=1)

HSP 1 Score: 286 bits (733), Expect = 1.15e-93
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 0 

Query: 1   MGVGINIKTNIGRGGFIKNITVSNVYMENSRKGLKIAGDAGDHPDDKFDPNALPIVKDIT 60
           MGVGINIKTNIGRGGFIKNITVSNVYMENSRKGLKIAGDAGDHPDDKFDPNALPIVKDIT
Sbjct: 309 MGVGINIKTNIGRGGFIKNITVSNVYMENSRKGLKIAGDAGDHPDDKFDPNALPIVKDIT 368

Query: 61  IKNIWGVNVQQAGSIYGLRDSPFTGICLSNINLRGATRPRSVPWTCSYVSGAASLVSPWP 120
           IKNIWGVNVQQAGSIYGLRDSPFTGICLSNINLRGATRPRSVPWTCSYVSGAASLVSPWP
Sbjct: 369 IKNIWGVNVQQAGSIYGLRDSPFTGICLSNINLRGATRPRSVPWTCSYVSGAASLVSPWP 428

Query: 121 CSELTSTDQDGLCSDNF 137
           CSELTSTDQDGLCSDNF
Sbjct: 429 CSELTSTDQDGLCSDNF 445

[Close]
BLAST of Cucsat.G21334 vs. ExPASy TrEMBL
Match: A0A5A7TLS6 (Putative polygalacturonase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold376G001910 PE=3 SV=1)

HSP 1 Score: 273 bits (698), Expect = 2.21e-88
Identity = 129/137 (94.16%), Postives = 131/137 (95.62%), Query Frame = 0 

Query: 1   MGVGINIKTNIGRGGFIKNITVSNVYMENSRKGLKIAGDAGDHPDDKFDPNALPIVKDIT 60
           MGVGINIKTNIGRGGFIKNITVSNVYMENSRKGLKIAGD GDHPDDKFDPNALPIVKDIT
Sbjct: 309 MGVGINIKTNIGRGGFIKNITVSNVYMENSRKGLKIAGDTGDHPDDKFDPNALPIVKDIT 368

Query: 61  IKNIWGVNVQQAGSIYGLRDSPFTGICLSNINLRGATRPRSVPWTCSYVSGAASLVSPWP 120
           IKN WGV VQQAGSIYGLRDSPFTGICLSNIN RG TRPRSVPWTCSYVSGAA +VSPWP
Sbjct: 369 IKNAWGVKVQQAGSIYGLRDSPFTGICLSNINFRGTTRPRSVPWTCSYVSGAALMVSPWP 428

Query: 121 CSELTSTDQDGLCSDNF 137
           CSELTST+QDGLCSDNF
Sbjct: 429 CSELTSTEQDGLCSDNF 445

[Close]
BLAST of Cucsat.G21334 vs. ExPASy TrEMBL
Match: A0A1S3ATJ9 (probable polygalacturonase OS=Cucumis melo OX=3656 GN=LOC103482817 PE=3 SV=1)

HSP 1 Score: 273 bits (698), Expect = 2.21e-88
Identity = 129/137 (94.16%), Postives = 131/137 (95.62%), Query Frame = 0 

Query: 1   MGVGINIKTNIGRGGFIKNITVSNVYMENSRKGLKIAGDAGDHPDDKFDPNALPIVKDIT 60
           MGVGINIKTNIGRGGFIKNITVSNVYMENSRKGLKIAGD GDHPDDKFDPNALPIVKDIT
Sbjct: 309 MGVGINIKTNIGRGGFIKNITVSNVYMENSRKGLKIAGDTGDHPDDKFDPNALPIVKDIT 368

Query: 61  IKNIWGVNVQQAGSIYGLRDSPFTGICLSNINLRGATRPRSVPWTCSYVSGAASLVSPWP 120
           IKN WGV VQQAGSIYGLRDSPFTGICLSNIN RG TRPRSVPWTCSYVSGAA +VSPWP
Sbjct: 369 IKNAWGVKVQQAGSIYGLRDSPFTGICLSNINFRGTTRPRSVPWTCSYVSGAALMVSPWP 428

Query: 121 CSELTSTDQDGLCSDNF 137
           CSELTST+QDGLCSDNF
Sbjct: 429 CSELTSTEQDGLCSDNF 445

[Close]
BLAST of Cucsat.G21334 vs. ExPASy TrEMBL
Match: A0A6J1CY77 (probable polygalacturonase OS=Momordica charantia OX=3673 GN=LOC111015353 PE=3 SV=1)

HSP 1 Score: 271 bits (693), Expect = 4.85e-88
Identity = 128/137 (93.43%), Postives = 131/137 (95.62%), Query Frame = 0 

Query: 1   MGVGINIKTNIGRGGFIKNITVSNVYMENSRKGLKIAGDAGDHPDDKFDPNALPIVKDIT 60
           MGVGINIKTNIGRGGFIKNITVSNVYME SRKGLKIAGD GDHPDDKFDPNALPIVKDIT
Sbjct: 276 MGVGINIKTNIGRGGFIKNITVSNVYMERSRKGLKIAGDTGDHPDDKFDPNALPIVKDIT 335

Query: 61  IKNIWGVNVQQAGSIYGLRDSPFTGICLSNINLRGATRPRSVPWTCSYVSGAASLVSPWP 120
           IKN+WGVNVQQAGSIYGL++SPFTGICLSNINL G TRPRSVPWTCSYVSGAA LVSPWP
Sbjct: 336 IKNVWGVNVQQAGSIYGLKNSPFTGICLSNINLHGTTRPRSVPWTCSYVSGAALLVSPWP 395

Query: 121 CSELTSTDQDGLCSDNF 137
           CSELTST QDGLCSDNF
Sbjct: 396 CSELTSTQQDGLCSDNF 412

[Close]
BLAST of Cucsat.G21334 vs. ExPASy TrEMBL
Match: A0A6J1K7T4 (probable polygalacturonase OS=Cucurbita maxima OX=3661 GN=LOC111490953 PE=3 SV=1)

HSP 1 Score: 266 bits (680), Expect = 1.15e-85
Identity = 125/137 (91.24%), Postives = 131/137 (95.62%), Query Frame = 0 

Query: 1   MGVGINIKTNIGRGGFIKNITVSNVYMENSRKGLKIAGDAGDHPDDKFDPNALPIVKDIT 60
           MGVGINIKTNIGRGGFIKNIT+S+VYME+SRKGLKIA D GDHPDDKFDPNALPIVKDIT
Sbjct: 309 MGVGINIKTNIGRGGFIKNITISDVYMESSRKGLKIASDTGDHPDDKFDPNALPIVKDIT 368

Query: 61  IKNIWGVNVQQAGSIYGLRDSPFTGICLSNINLRGATRPRSVPWTCSYVSGAASLVSPWP 120
           IKN+WGVNVQQAGSIYGLR+SPFTGICLSNINLRG  RPRSVPWTCSYVSGAA LVSPWP
Sbjct: 369 IKNVWGVNVQQAGSIYGLRNSPFTGICLSNINLRGTARPRSVPWTCSYVSGAALLVSPWP 428

Query: 121 CSELTSTDQDGLCSDNF 137
           CSELTST QDGLCS+NF
Sbjct: 429 CSELTSTQQDGLCSNNF 445

The following BLAST results are available for this feature:
BLAST of Cucsat.G21334 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
A7PZL31.3e-2439.10Probable polygalacturonase OS=Vitis vinifera OX=29760 GN=GSVIVT00026920001 PE=1 ... [more]
BLAST of Cucsat.G21334 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004143871.12.38e-93100.00probable polygalacturonase [Cucumis sativus] >KGN50025.1 hypothetical protein Cs... [more]
XP_008437386.14.57e-8894.16PREDICTED: probable polygalacturonase [Cucumis melo] >KAA0042687.1 putative poly... [more]
XP_022146051.11.00e-8793.43probable polygalacturonase [Momordica charantia][more]
XP_038876129.11.47e-8692.70probable polygalacturonase [Benincasa hispida][more]
XP_023534421.12.37e-8591.24probable polygalacturonase isoform X1 [Cucurbita pepo subsp. pepo] >XP_023534422... [more]
BLAST of Cucsat.G21334 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KK361.15e-93100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G150430 PE=3 SV=1[more]
A0A5A7TLS62.21e-8894.16Putative polygalacturonase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff... [more]
A0A1S3ATJ92.21e-8894.16probable polygalacturonase OS=Cucumis melo OX=3656 GN=LOC103482817 PE=3 SV=1[more]
A0A6J1CY774.85e-8893.43probable polygalacturonase OS=Momordica charantia OX=3673 GN=LOC111015353 PE=3 S... [more]
A0A6J1K7T41.15e-8591.24probable polygalacturonase OS=Cucurbita maxima OX=3661 GN=LOC111490953 PE=3 SV=1[more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012334Pectin lyase foldGENE3D2.160.20.10coord: 37..245
e-value: 8.7E-62
score: 211.4
IPR000743Glycoside hydrolase, family 28PFAMPF00295Glyco_hydro_28coord: 138..234
e-value: 1.7E-15
score: 56.9
NoneNo IPR availablePANTHERPTHR31339:SF3PECTIN LYASE-LIKE SUPERFAMILY PROTEINcoord: 9..238
NoneNo IPR availablePANTHERPTHR31339PECTIN LYASE-RELATEDcoord: 9..238
IPR011050Pectin lyase fold/virulence factorSUPERFAMILY51126Pectin lyase-likecoord: 33..243

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsat.G21334.T11Cucsat.G21334.T11mRNA
Cucsat.G21334.T3Cucsat.G21334.T3mRNA
Cucsat.G21334.T1Cucsat.G21334.T1mRNA
Cucsat.G21334.T7Cucsat.G21334.T7mRNA
Cucsat.G21334.T8Cucsat.G21334.T8mRNA
Cucsat.G21334.T6Cucsat.G21334.T6mRNA
Cucsat.G21334.T2Cucsat.G21334.T2mRNA
Cucsat.G21334.T5Cucsat.G21334.T5mRNA
Cucsat.G21334.T4Cucsat.G21334.T4mRNA
Cucsat.G21334.T9Cucsat.G21334.T9mRNA
Cucsat.G21334.T10Cucsat.G21334.T10mRNA
Cucsat.G21334.T12Cucsat.G21334.T12mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0005975 carbohydrate metabolic process
molecular_function GO:0016829 lyase activity
molecular_function GO:0004650 polygalacturonase activity