Cucsat.G21193 (gene) Cucumber (B10) v3

Overview


Name	Cucsat.G21193
Type	gene
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	late embryogenesis abundant protein At5g17165-like
Location	ctg910: 3338264 .. 3339980 (-)
RNA-Seq Expression	Cucsat.G21193
Synteny	Cucsat.G21193

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AGAAGAGAAAAGGCATATTTTCATTTTGTGTGTGTTTCTCTTTCTATTCCTCCAACCATTGGCATTGGCTTGGCATCAAAACTAATATTTGTAGCTAAAGTACTTAACTTGTGTGTGTTTGATTTGCATGGCCTGCAGTTCGAAGATTATCGTTGCTGCTGCTGCTGCTAGTCCACGACTCTCATTATTACTTCCTCACACTTATCTCTTTCCCTTCCCTAATTTTGGCTTCCGGTACGTTTTTCTTTAATCCTCTTTGGTATTTCATGTGATGTTTTTGTTTAGGGTTGATTCTCTTCTTTTACCTTTTGAGTCATACTATAGAGATTTGATTTTATGATGTTTCTGCCTTCAAACTTCGCTCCAAAACTTTTACTGTTTGTCGAGGTGAAAAAGTACTAGAGAGAGATCTTTGTTGATGATTTTTATGCGTGAATCGAAGTCAGTTAACATATTAACACCGATGCATTTGATGTTGTGTTGATTGAATTGTTCACGCACGCTACGTTGACGAAACTTTGTTTATGTTGACACAATAGTGACTGTGTAAGCCCGTTGATGATTTCTACTCACATAAGATACCTAAAACAAAAAGAACTTTTTGTTCGTGTGTGGACAAAAGTATCATTTCCACATATGCACGATATATTGATACAAAAAAGATGTTTATAGAAGTCCATTAATCCTCTCTCAAGAGCTATGTTAAGTCTTGGTTGTGCCTTGTTTAATTTATTCAAATATTGAGATTTTGTTGTTTTTTAAATGTTTATTGAAAATTAAAACGTACATGTGGAAGTATATATATCACGAAATTTTTTTTTTTTTTAAAAAAGACATAATCTAATAAGTAACCACGATAATTAGAACTAGATCATAAATATATAACCGAAAAACAACTATCAATCCAATAATTAGTATTAAAATCTTTCATCTAAAATTAAAATTAAGACACTATCATATACTCAATCTTTTTCTATCGTCCTATTAACACAAACAATGAATTTTTCACACTAGAAACGTAAGAACACAAAAAAAATTTTAAAAAATAGAGTGAGATTCACTAATGTTAATATGACATCCATTACTACTCACGAAAATAAATCTATAGTATGATATGGTATGATATGATATGATATGATATCCCGATGCAACCAACCCGAGTTTATTAGTTGTTGGTTTTTTAGGTCAAGTCATTGGTCAGCGTACGAGAAGAACCAAGAGGACCAAATATGGCCTACAATGGTACCCAATCACCTGATCTCTCGTGATCTATCCGAAGATTATTGGGTTCCCCATCCTGAAACCGGAGTTTTTGGGCCTCCAAAAGCCCACCACAATTCTTCAACTGTTCCCAACGACACGTCGGCTGGTGGTAACGAGGGTTCCGTTCTAAACCTCAAGGCTTGGTTCCGACATAACGGCCTCGAAGACCTCGAGAAACCACACACTCTCTAATTTGGACCCTTGAGATCATATGATAAGAAGATAATAAATAGTATTTTGTCACACATTAATAACATAGTTGATTAAGTTGTTTGCATACTTTATATCAATATTTTTATTTTATGAATAATATGTCAATATGTTGTATGTTTGGATTGAGGGTCGTGCTTTTAATATCAAGTGTGATGAATTACATAAATTTAGTGTTATAAATGTTGAAATTTTGAGTATTAGTGTGTACTTCTATATCCCTTTTTACCATACGAGTAAGAAT

Coding sequence (CDS)

ATGGCCTGCAGTTCGAAGATTATCGTTGCTGCTGCTGCTGCTAGTCCACGACTCTCATTATTACTTCCTCACACTTATCTCTTTCCCTTCCCTAATTTTGGCTTCCGTTGTTGGTTTTTTAGGTCAAGTCATTGGTCAGCGTACGAGAAGAACCAAGAGGACCAAATATGGCCTACAATGGTACCCAATCACCTGATCTCTCGTGATCTATCCGAAGATTATTGGGTTCCCCATCCTGAAACCGGAGTTTTTGGGCCTCCAAAAGCCCACCACAATTCTTCAACTGTTCCCAACGACACGTCGGCTGGTGGTAACGAGGGTTCCGTTCTAAACCTCAAGGCTTGGTTCCGACATAACGGCCTCGAAGACCTCGAGAAACCACACACTCTCTAA

Protein sequence

MACSSKIIVAAAAASPRLSLLLPHTYLFPFPNFGFRCWFFRSSHWSAYEKNQEDQIWPTMVPNHLISRDLSEDYWVPHPETGVFGPPKAHHNSSTVPNDTSAGGNEGSVLNLKAWFRHNGLEDLEKPHTL

Homology

[Close]

BLAST of Cucsat.G21193 vs. ExPASy Swiss-Prot
Match: F4KFM8 (Late embryogenesis abundant protein At5g17165 OS=Arabidopsis thaliana OX=3702 GN=At5g17165 PE=3 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 8.8e-18
Identity = 45/88 (51.14%), Postives = 58/88 (65.91%), Query Frame = 0


Query: 41  RSSHWSAYEKNQEDQIWPTMVPNHLISRDLSEDYWVPHPETGVFGPPKAHHNSSTVPNDT 100
           R+ H SAY+KN E+++ P+ VP+ +I  D S+ YW PHP+TGVFGP     +SST   D 
Sbjct: 32  RNDHTSAYDKNVEEELQPSQVPDEMIKPD-SDKYWSPHPQTGVFGP----SSSSTNAKDE 91

Query: 101 SAGGNEGSVLNLKAWFRHNGLEDLEKPH 129
             GG E SV+  KAWFR   LEDL+K H
Sbjct: 92  FRGGQEDSVMEEKAWFRPTSLEDLDKTH 114

[Close]

BLAST of Cucsat.G21193 vs. NCBI nr
Match: KAE8647930.1 (hypothetical protein Csa_000491 [Cucumis sativus])

HSP 1 Score: 280 bits (716), Expect = 2.45e-95
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 0


Query: 1   MACSSKIIVAAAAASPRLSLLLPHTYLFPFPNFGFRCWFFRSSHWSAYEKNQEDQIWPTM 60
           MACSSKIIVAAAAASPRLSLLLPHTYLFPFPNFGFRCWFFRSSHWSAYEKNQEDQIWPTM
Sbjct: 1   MACSSKIIVAAAAASPRLSLLLPHTYLFPFPNFGFRCWFFRSSHWSAYEKNQEDQIWPTM 60

Query: 61  VPNHLISRDLSEDYWVPHPETGVFGPPKAHHNSSTVPNDTSAGGNEGSVLNLKAWFRHNG 120
           VPNHLISRDLSEDYWVPHPETGVFGPPKAHHNSSTVPNDTSAGGNEGSVLNLKAWFRHNG
Sbjct: 61  VPNHLISRDLSEDYWVPHPETGVFGPPKAHHNSSTVPNDTSAGGNEGSVLNLKAWFRHNG 120

Query: 121 LEDLEKPHTL 130
           LEDLEKPHTL
Sbjct: 121 LEDLEKPHTL 130

[Close]

BLAST of Cucsat.G21193 vs. NCBI nr
Match: XP_004143665.1 (late embryogenesis abundant protein At5g17165 [Cucumis sativus])

HSP 1 Score: 261 bits (666), Expect = 8.79e-88
Identity = 125/130 (96.15%), Postives = 125/130 (96.15%), Query Frame = 0


Query: 1   MACSSKIIVAAAAASPRLSLLLPHTYLFPFPNFGFRCWFFRSSHWSAYEKNQEDQIWPTM 60
           MACSSKIIVAAAAASPRLSLLLPHTYLFPFPNFGFR     SSHWSAYEKNQEDQIWPTM
Sbjct: 1   MACSSKIIVAAAAASPRLSLLLPHTYLFPFPNFGFR-----SSHWSAYEKNQEDQIWPTM 60

Query: 61  VPNHLISRDLSEDYWVPHPETGVFGPPKAHHNSSTVPNDTSAGGNEGSVLNLKAWFRHNG 120
           VPNHLISRDLSEDYWVPHPETGVFGPPKAHHNSSTVPNDTSAGGNEGSVLNLKAWFRHNG
Sbjct: 61  VPNHLISRDLSEDYWVPHPETGVFGPPKAHHNSSTVPNDTSAGGNEGSVLNLKAWFRHNG 120

Query: 121 LEDLEKPHTL 130
           LEDLEKPHTL
Sbjct: 121 LEDLEKPHTL 125

[Close]

BLAST of Cucsat.G21193 vs. NCBI nr
Match: KAA0055104.1 (uncharacterized protein E6C27_scaffold231G00300 [Cucumis melo var. makuwa])

HSP 1 Score: 206 bits (524), Expect = 4.53e-66
Identity = 103/134 (76.87%), Postives = 117/134 (87.31%), Query Frame = 0


Query: 1   MACSSKIIVAAA--AASPRLSLLLPHT-YLFPFPNFGFRCWFFRSSHWSAYEKNQEDQIW 60
           MACSSKIIV A+  AA+PRLSLL+ H+ +LFPF N GFR     +SHWSAYEKNQED IW
Sbjct: 1   MACSSKIIVVASTTAAAPRLSLLVSHSPHLFPFANSGFR-----ASHWSAYEKNQEDPIW 60

Query: 61  PTMVPNHLISRDLSEDYWVPHPETGVFGPPKAHHNSSTVPNDTSAGGNEG-SVLNLKAWF 120
           PTMVPN +I  +LS++YWVPHP+TGVFGPPKAHH+SST+PNDTSAGGNEG SVLNLKAWF
Sbjct: 61  PTMVPNDVIHHNLSDNYWVPHPQTGVFGPPKAHHDSSTLPNDTSAGGNEGGSVLNLKAWF 120

Query: 121 RHNGLEDLEKPHTL 130
           RHNGLEDLEKPH+L
Sbjct: 121 RHNGLEDLEKPHSL 129

[Close]

BLAST of Cucsat.G21193 vs. NCBI nr
Match: XP_016903720.1 (PREDICTED: uncharacterized protein LOC103504694 [Cucumis melo])

HSP 1 Score: 205 bits (521), Expect = 2.50e-65
Identity = 100/130 (76.92%), Postives = 113/130 (86.92%), Query Frame = 0


Query: 4   SSKIIVAA--AAASPRLSLLLPHT-YLFPFPNFGFRCWFFRSSHWSAYEKNQEDQIWPTM 63
           +SKIIV A   AA+PRLSLL+ H+ +LFPF N GFR     +SHWSAYEKNQED IWPTM
Sbjct: 25  NSKIIVVAFTTAAAPRLSLLVSHSPHLFPFANSGFR-----ASHWSAYEKNQEDPIWPTM 84

Query: 64  VPNHLISRDLSEDYWVPHPETGVFGPPKAHHNSSTVPNDTSAGGNEGSVLNLKAWFRHNG 123
           VPN +I  +LS++YWVPHP+TGVFGPPKAHHNSST+PNDTSAGGNEGSVLNLKAWFRHNG
Sbjct: 85  VPNDVIHHNLSDNYWVPHPQTGVFGPPKAHHNSSTLPNDTSAGGNEGSVLNLKAWFRHNG 144

Query: 124 LEDLEKPHTL 130
           LEDLEKPH+L
Sbjct: 145 LEDLEKPHSL 149

[Close]

BLAST of Cucsat.G21193 vs. NCBI nr
Match: XP_038875585.1 (late embryogenesis abundant protein At5g17165-like [Benincasa hispida])

HSP 1 Score: 164 bits (414), Expect = 2.21e-49
Identity = 82/132 (62.12%), Postives = 98/132 (74.24%), Query Frame = 0


Query: 1   MACSSKIIVAAAAASPRLSLLLP-----HTYLFPFPNFGFRCWFFRSSHWSAYEKNQEDQ 60
           MA S +II+    ASPR  L  P     H++LFP   F       R+SHWSAYEKN E+Q
Sbjct: 1   MASSWRIII----ASPRFLLSSPPSSLSHSHLFPSATF-----LLRASHWSAYEKNPEEQ 60

Query: 61  IWPTMVPNHLISRDLSEDYWVPHPETGVFGPPKAHHNSSTVPNDTSAGGNEGSVLNLKAW 120
           IWPT+VP+H+I  ++SE+YW PHPETGVFGPP AH ++S VPNDTSAGG E SVL++KAW
Sbjct: 61  IWPTVVPDHVIHTNISENYWAPHPETGVFGPPIAHQSTSAVPNDTSAGGKEDSVLDIKAW 120

Query: 121 FRHNGLEDLEKP 127
           FRHNGLEDLEKP
Sbjct: 121 FRHNGLEDLEKP 123

[Close]

BLAST of Cucsat.G21193 vs. ExPASy TrEMBL
Match: A0A0A0KRJ5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G168830 PE=4 SV=1)

HSP 1 Score: 261 bits (666), Expect = 4.26e-88
Identity = 125/130 (96.15%), Postives = 125/130 (96.15%), Query Frame = 0


Query: 1   MACSSKIIVAAAAASPRLSLLLPHTYLFPFPNFGFRCWFFRSSHWSAYEKNQEDQIWPTM 60
           MACSSKIIVAAAAASPRLSLLLPHTYLFPFPNFGFR     SSHWSAYEKNQEDQIWPTM
Sbjct: 1   MACSSKIIVAAAAASPRLSLLLPHTYLFPFPNFGFR-----SSHWSAYEKNQEDQIWPTM 60

Query: 61  VPNHLISRDLSEDYWVPHPETGVFGPPKAHHNSSTVPNDTSAGGNEGSVLNLKAWFRHNG 120
           VPNHLISRDLSEDYWVPHPETGVFGPPKAHHNSSTVPNDTSAGGNEGSVLNLKAWFRHNG
Sbjct: 61  VPNHLISRDLSEDYWVPHPETGVFGPPKAHHNSSTVPNDTSAGGNEGSVLNLKAWFRHNG 120

Query: 121 LEDLEKPHTL 130
           LEDLEKPHTL
Sbjct: 121 LEDLEKPHTL 125

[Close]

BLAST of Cucsat.G21193 vs. ExPASy TrEMBL
Match: A0A5A7UIY1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold231G00300 PE=4 SV=1)

HSP 1 Score: 206 bits (524), Expect = 2.19e-66
Identity = 103/134 (76.87%), Postives = 117/134 (87.31%), Query Frame = 0


Query: 1   MACSSKIIVAAA--AASPRLSLLLPHT-YLFPFPNFGFRCWFFRSSHWSAYEKNQEDQIW 60
           MACSSKIIV A+  AA+PRLSLL+ H+ +LFPF N GFR     +SHWSAYEKNQED IW
Sbjct: 1   MACSSKIIVVASTTAAAPRLSLLVSHSPHLFPFANSGFR-----ASHWSAYEKNQEDPIW 60

Query: 61  PTMVPNHLISRDLSEDYWVPHPETGVFGPPKAHHNSSTVPNDTSAGGNEG-SVLNLKAWF 120
           PTMVPN +I  +LS++YWVPHP+TGVFGPPKAHH+SST+PNDTSAGGNEG SVLNLKAWF
Sbjct: 61  PTMVPNDVIHHNLSDNYWVPHPQTGVFGPPKAHHDSSTLPNDTSAGGNEGGSVLNLKAWF 120

Query: 121 RHNGLEDLEKPHTL 130
           RHNGLEDLEKPH+L
Sbjct: 121 RHNGLEDLEKPHSL 129

[Close]

BLAST of Cucsat.G21193 vs. ExPASy TrEMBL
Match: A0A1S4E6U6 (uncharacterized protein LOC103504694 OS=Cucumis melo OX=3656 GN=LOC103504694 PE=4 SV=1)

HSP 1 Score: 205 bits (521), Expect = 1.21e-65
Identity = 100/130 (76.92%), Postives = 113/130 (86.92%), Query Frame = 0


Query: 4   SSKIIVAA--AAASPRLSLLLPHT-YLFPFPNFGFRCWFFRSSHWSAYEKNQEDQIWPTM 63
           +SKIIV A   AA+PRLSLL+ H+ +LFPF N GFR     +SHWSAYEKNQED IWPTM
Sbjct: 25  NSKIIVVAFTTAAAPRLSLLVSHSPHLFPFANSGFR-----ASHWSAYEKNQEDPIWPTM 84

Query: 64  VPNHLISRDLSEDYWVPHPETGVFGPPKAHHNSSTVPNDTSAGGNEGSVLNLKAWFRHNG 123
           VPN +I  +LS++YWVPHP+TGVFGPPKAHHNSST+PNDTSAGGNEGSVLNLKAWFRHNG
Sbjct: 85  VPNDVIHHNLSDNYWVPHPQTGVFGPPKAHHNSSTLPNDTSAGGNEGSVLNLKAWFRHNG 144

Query: 124 LEDLEKPHTL 130
           LEDLEKPH+L
Sbjct: 145 LEDLEKPHSL 149

[Close]

BLAST of Cucsat.G21193 vs. ExPASy TrEMBL
Match: A0A6J1K564 (late embryogenesis abundant protein At5g17165-like OS=Cucurbita maxima OX=3661 GN=LOC111490853 PE=4 SV=1)

HSP 1 Score: 129 bits (324), Expect = 4.64e-36
Identity = 71/131 (54.20%), Postives = 87/131 (66.41%), Query Frame = 0


Query: 1   MACSSKIIVAAAAASPRLSLLLPHTYLFPFPNFGFRCWFFRSSHWSAYEKNQEDQIWPTM 60
           MA +S +I+   AA PRL+ L       P        +  R+ HWSAYEKN E+++ PT+
Sbjct: 1   MAAASNLII---AARPRLAHLRN-----PVRRLSPSLFTLRAGHWSAYEKNPEEEVCPTV 60

Query: 61  VPNHLISRDLSEDYWVPHPETGVFGPPKAHHNSSTVPNDTSAGG-NEGSVLNLKAWFRHN 120
           VP+H+I   +SEDYW PHP+TGVFGPP + HN   VP+DTSAGG  EGSVL LK WFRH 
Sbjct: 61  VPDHMI-HSISEDYWAPHPQTGVFGPPISQHNP--VPSDTSAGGAKEGSVLELKVWFRHI 120

Query: 121 GLEDLEKPHTL 130
            LED EKPH L
Sbjct: 121 ELEDPEKPHDL 120

[Close]

BLAST of Cucsat.G21193 vs. ExPASy TrEMBL
Match: A0A6J1H0D3 (late embryogenesis abundant protein At5g17165-like OS=Cucurbita moschata OX=3662 GN=LOC111459285 PE=4 SV=1)

HSP 1 Score: 117 bits (293), Expect = 1.92e-31
Identity = 66/123 (53.66%), Postives = 80/123 (65.04%), Query Frame = 0


Query: 1   MACSSKIIVAAAAASPRLSLLLPHTYLFPFPNFGFRCWFFRSSHWSAYEKNQEDQIWPTM 60
           MA +S +I+   AA PRL+ L       P        +  R+ HWSAYEKN E+++ PT+
Sbjct: 1   MAAASNLII---AARPRLAHLRN-----PLRRLSPSLFTLRAGHWSAYEKNPEEEVCPTV 60

Query: 61  VPNHLISRDLSEDYWVPHPETGVFGPPKAHHNSSTVPNDTSAGG-NEGSVLNLKAWFRHN 120
           VP+H+I   LSEDYW PHP+TGVFGPP   HN   VP+DTSAGG  EGSVL LK WFRH 
Sbjct: 61  VPDHMI-HSLSEDYWAPHPQTGVFGPPITQHNP--VPSDTSAGGAKEGSVLELKVWFRHV 112

Query: 121 GLE 122
            LE
Sbjct: 121 ELE 112

The following BLAST results are available for this feature:

BLAST of Cucsat.G21193 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4KFM8	8.8e-18	51.14	Late embryogenesis abundant protein At5g17165 OS=Arabidopsis thaliana OX=3702 GN...	[more]

BLAST of Cucsat.G21193 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8647930.1	2.45e-95	100.00	hypothetical protein Csa_000491 [Cucumis sativus]	[more]
XP_004143665.1	8.79e-88	96.15	late embryogenesis abundant protein At5g17165 [Cucumis sativus]	[more]
KAA0055104.1	4.53e-66	76.87	uncharacterized protein E6C27_scaffold231G00300 [Cucumis melo var. makuwa]	[more]
XP_016903720.1	2.50e-65	76.92	PREDICTED: uncharacterized protein LOC103504694 [Cucumis melo]	[more]
XP_038875585.1	2.21e-49	62.12	late embryogenesis abundant protein At5g17165-like [Benincasa hispida]	[more]

BLAST of Cucsat.G21193 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KRJ5	4.26e-88	96.15	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G168830 PE=4 SV=1	[more]
A0A5A7UIY1	2.19e-66	76.87	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A1S4E6U6	1.21e-65	76.92	uncharacterized protein LOC103504694 OS=Cucumis melo OX=3656 GN=LOC103504694 PE=...	[more]
A0A6J1K564	4.64e-36	54.20	late embryogenesis abundant protein At5g17165-like OS=Cucurbita maxima OX=3661 G...	[more]
A0A6J1H0D3	1.92e-31	53.66	late embryogenesis abundant protein At5g17165-like OS=Cucurbita moschata OX=3662...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 80..99
None	No IPR available	PANTHER	PTHR35122:SF2	OSJNBA0093F12.14 PROTEIN	coord: 27..124
IPR039291	Late embryogenesis abundant protein At5g17165-like	PANTHER	PTHR35122	OSJNBA0093F12.14 PROTEIN	coord: 27..124

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsat.G21193.T2	Cucsat.G21193.T2	mRNA
Cucsat.G21193.T1	Cucsat.G21193.T1	mRNA