Cucsat.G21022 (gene) Cucumber (B10) v3

Overview


Name	Cucsat.G21022
Type	gene
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	Polypyrimidine tract-binding protein-like protein 2
Location	ctg910: 337785 .. 340459 (-)
RNA-Seq Expression	Cucsat.G21022
Synteny	Cucsat.G21022

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AGAGGCGACGTGTCTCAACTTTGAAGGATTCTGTTTCTTTGAACACCTCCATGCATGCAGCCACGTAACGTAAGCGTAACACATCATCATCAACAATCCCTTTCTCTCTCCTACATCTCACATTCTCTCTCTGGAGTATACGCCCATATTCTCATTTTTCACAGAAGCTGCAAGTGATTTTCCAATTTCCATTACCAAATCCAAAATCAAACCCAATCCCAGAATCAGATTTGCCATGGTCAAGCTAGTCTCCGCTAGAGATTTCAGGGTCTATGGCCCTCGTTCGGTTCGGAACCGGGCGGAGTACATCAATGCCGGCCTCTACTTGTTCGCCACTATCCTCCTTCTGGGTGGCTTTGTTGCTCAGCTTTCCCGAGAACCCAAATCTGGTTTGGCACTAATTCTTCTCGCCACTTCCCTATTTGCCATCGTTAATTTGCATGATCTCTTCGCGCATCTCGCCGGAATTGATTACCGGTTGCCACTGCTTGTTCAGTACGATGCCCAGCTTTTTTTTGTGGAATTTGCTGTTCCGTTTCTTCAGGCGATTGGGTCGCTGCTTTTGTCTTTCGCTGCACTGTTTCTTCTAATTCAGGTCCTTATTAATCGTTTGTTTGCTTTACTCTGCTTAATTTAGTTTTCTAGGTTAATGGTAATACTATTTTTGCTTTGGAATTTCTAACAAAATTGCACTTGTCGATCTTGATGAGAAATTGTTTTGAGGGGCTGGTCAATTGGTTTTATGAGATGTTCTGTGTGCTACCTAAGTTTAATTACTCTTGTTCTCCTCTGTTATTAGTCTTGGATTTTAGAATTAGTCAAAATCAGCAACCCTTTTAGAACCATCCACTTCTTTGGATAGTTTCAAGTTTGAGTCAATGATTTCAGTGCCATTTTCCCTGCCATTGGTTGTGATAATTTTGGGCAATGAGTGACTGAGTGAGTTATGTAAGGCTTGGTGGCAACATTTCTGCTACTCATTTCTTCAATTTTTCTTTAAAGAAATAAAAGCAAAACTGTGTTTGGTAATTGTTTCTATTTCTTATTGAAATTTGGAAGAACAAAAAAGCAGAAGATGGATAATTTTATAGGGGAAAATATTGTGTAGTTTTTTCAGCAATAGTCTCCCAGTTTTCAAATATTCAATTATTAACAAAAGAACAAGATGCAGTCGTTTCAGCAATGTTTAATTGTTCGAAGAACAGTGTGTTGTTGTAAGTACTTGACAATGTTTTGGGTTCACCTGACTTCGTTACATGCTATCACTGGAGGCCCTCCTCACACCCGGGACACAGAAATAAAAAACCCCGTGTCAAAGATCAAAAGCGATGGCGAAATCTAGAAATGCCATCCTCGGTTTCAATGATTGCACATTGTAGGAAAACTGTTTGATCAACTTCGTTCCGTTCCTAATGTTAATTTTTTACAGTATTCATGTTTGTTGTGTTGTCCTCCTTTTGCACTTTACAAGAGCTGCCATTCAATTTGCTGCTGCAGGAAAAGAAGGGACATGATTATCACAAACTCGAAAAGCATGCTTCAAATATGCTTATTGCGGGTCCTGCCTTATGGATGCTTGGATCGATCCACAACTCATGCCAAATCTACGAAAGGGCTGATGCACATGTTCAAATCTTGCAACAGAGTGTCCATATTCCATTTTTAATAGGAAGCTTGCTGTTTTTTGTTGCAGCAGTTCTCAATAGCTACGAGCAAGTTGGGTTAGCCCATCATGGTCTCAAACTTCTGGTATGTGACATTGAATACATACATTTTACTGTCAGTAGCGAACAATTGATTCTGAATTGCCTTTAAAAAGCTTATTCAAAAAAGGAAAAAGTTGTCACAATGATTATGGTTCCACCCTCAAGAATAATAGAGTGTCAATGACGTGAGGTAAAGAAATCAAAATAGATTGGTGATTGTGAACTATAACCACGGTTCATATTGTTGTTTTGCTATGAATTCAAATTTTAAACATTTTGATGAATATTTTAGTTATAAGCAACAAACAAAAGTTTGATAATCGGTCTAACAAAATGGTTGCATAAATATTTGCTTCAAAAGGAATGGCATTTTACTGAAGTTTTACGTGTTGACGAGTGTGTGAATGCAGGGCAAAAACTGGATTTGGTTAGGTATCTTTGGGAGCTTATCGTTCTTGTTAGGCGGATTGGCAAACGTGCTTAAAGTGTTCAAGATGCAGCAGTTCGAGGGACTGCGACTTGAGAAGCTTCGAGGAGGGGCAAACGAGCGGCTTCTTGGAGAAAGAGAAGGCAGGATTCCTCTGATTCTAGAGGATCAGGGTAGGAGAAAACGACACTCAGATGAAGAAAGAGGAAGGGTCGAAGCCAGACCAACGCCTTATAAAGACGTACTCGTAGGCCAATCACCCTGAAGTTCTCTTTCCCTCTTCCACTTCCATTACTGACTCCTGCAACTGAACTTGATCAATCTCTGGAAAGTACCTTTTGTTACCGAATATTATGTGCATTTGCATATAGAATTTATGTGATTATGATTATGATTGATGAGCAAGTTCGTAGAAGTAATAGAATATTGTTGATATATATTTGATATCTGATCTTGTTTGGTTGTTTCTGTTTGGACATTCAACTTATCTGTTGATAAACTGACTTTTGAAATAGTTTGGTGTATGTTCTCTTTTTTCTTCT

Coding sequence (CDS)

ATGGTCAAGCTAGTCTCCGCTAGAGATTTCAGGGTCTATGGCCCTCGTTCGGTTCGGAACCGGGCGGAGTACATCAATGCCGGCCTCTACTTGTTCGCCACTATCCTCCTTCTGGGTGGCTTTGTTGCTCAGCTTTCCCGAGAACCCAAATCTGGTTTGGCACTAATTCTTCTCGCCACTTCCCTATTTGCCATCGTTAATTTGCATGATCTCTTCGCGCATCTCGCCGGAATTGATTACCGGTTGCCACTGCTTGTTCAGTACGATGCCCAGCTTTTTTTTGTGGAATTTGCTGTTCCGTTTCTTCAGGCGATTGGGTCGCTGCTTTTGTCTTTCGCTGCACTGTTTCTTCTAATTCAGGAAAAGAAGGGACATGATTATCACAAACTCGAAAAGCATGCTTCAAATATGCTTATTGCGGGTCCTGCCTTATGGATGCTTGGATCGATCCACAACTCATGCCAAATCTACGAAAGGGCTGATGCACATGTTCAAATCTTGCAACAGAGTGTCCATATTCCATTTTTAATAGGAAGCTTGCTGTTTTTTGTTGCAGCAGTTCTCAATAGCTACGAGCAAGTTGGGTTAGCCCATCATGGTCTCAAACTTCTGGGCAAAAACTGGATTTGGTTAGGTATCTTTGGGAGCTTATCGTTCTTGTTAGGCGGATTGGCAAACGTGCTTAAAGTGTTCAAGATGCAGCAGTTCGAGGGACTGCGACTTGAGAAGCTTCGAGGAGGGGCAAACGAGCGGCTTCTTGGAGAAAGAGAAGGCAGGATTCCTCTGATTCTAGAGGATCAGGGTAGGAGAAAACGACACTCAGATGAAGAAAGAGGAAGGGTCGAAGCCAGACCAACGCCTTATAAAGACGTACTCGTAGGCCAATCACCCTGA

Protein sequence

MVKLVSARDFRVYGPRSVRNRAEYINAGLYLFATILLLGGFVAQLSREPKSGLALILLATSLFAIVNLHDLFAHLAGIDYRLPLLVQYDAQLFFVEFAVPFLQAIGSLLLSFAALFLLIQEKKGHDYHKLEKHASNMLIAGPALWMLGSIHNSCQIYERADAHVQILQQSVHIPFLIGSLLFFVAAVLNSYEQVGLAHHGLKLLGKNWIWLGIFGSLSFLLGGLANVLKVFKMQQFEGLRLEKLRGGANERLLGEREGRIPLILEDQGRRKRHSDEERGRVEARPTPYKDVLVGQSP

Homology

[Close]

BLAST of Cucsat.G21022 vs. NCBI nr
Match: KGN49880.1 (hypothetical protein Csa_000601 [Cucumis sativus])

HSP 1 Score: 575 bits (1481), Expect = 1.98e-206
Identity = 297/297 (100.00%), Postives = 297/297 (100.00%), Query Frame = 0


Query: 1   MVKLVSARDFRVYGPRSVRNRAEYINAGLYLFATILLLGGFVAQLSREPKSGLALILLAT 60
           MVKLVSARDFRVYGPRSVRNRAEYINAGLYLFATILLLGGFVAQLSREPKSGLALILLAT
Sbjct: 1   MVKLVSARDFRVYGPRSVRNRAEYINAGLYLFATILLLGGFVAQLSREPKSGLALILLAT 60

Query: 61  SLFAIVNLHDLFAHLAGIDYRLPLLVQYDAQLFFVEFAVPFLQAIGSLLLSFAALFLLIQ 120
           SLFAIVNLHDLFAHLAGIDYRLPLLVQYDAQLFFVEFAVPFLQAIGSLLLSFAALFLLIQ
Sbjct: 61  SLFAIVNLHDLFAHLAGIDYRLPLLVQYDAQLFFVEFAVPFLQAIGSLLLSFAALFLLIQ 120

Query: 121 EKKGHDYHKLEKHASNMLIAGPALWMLGSIHNSCQIYERADAHVQILQQSVHIPFLIGSL 180
           EKKGHDYHKLEKHASNMLIAGPALWMLGSIHNSCQIYERADAHVQILQQSVHIPFLIGSL
Sbjct: 121 EKKGHDYHKLEKHASNMLIAGPALWMLGSIHNSCQIYERADAHVQILQQSVHIPFLIGSL 180

Query: 181 LFFVAAVLNSYEQVGLAHHGLKLLGKNWIWLGIFGSLSFLLGGLANVLKVFKMQQFEGLR 240
           LFFVAAVLNSYEQVGLAHHGLKLLGKNWIWLGIFGSLSFLLGGLANVLKVFKMQQFEGLR
Sbjct: 181 LFFVAAVLNSYEQVGLAHHGLKLLGKNWIWLGIFGSLSFLLGGLANVLKVFKMQQFEGLR 240

Query: 241 LEKLRGGANERLLGEREGRIPLILEDQGRRKRHSDEERGRVEARPTPYKDVLVGQSP 297
           LEKLRGGANERLLGEREGRIPLILEDQGRRKRHSDEERGRVEARPTPYKDVLVGQSP
Sbjct: 241 LEKLRGGANERLLGEREGRIPLILEDQGRRKRHSDEERGRVEARPTPYKDVLVGQSP 297

[Close]

BLAST of Cucsat.G21022 vs. NCBI nr
Match: XP_031741225.1 (polypyrimidine tract-binding protein homolog 2 [Cucumis sativus])

HSP 1 Score: 575 bits (1481), Expect = 1.17e-198
Identity = 297/297 (100.00%), Postives = 297/297 (100.00%), Query Frame = 0


Query: 1   MVKLVSARDFRVYGPRSVRNRAEYINAGLYLFATILLLGGFVAQLSREPKSGLALILLAT 60
           MVKLVSARDFRVYGPRSVRNRAEYINAGLYLFATILLLGGFVAQLSREPKSGLALILLAT
Sbjct: 1   MVKLVSARDFRVYGPRSVRNRAEYINAGLYLFATILLLGGFVAQLSREPKSGLALILLAT 60

Query: 61  SLFAIVNLHDLFAHLAGIDYRLPLLVQYDAQLFFVEFAVPFLQAIGSLLLSFAALFLLIQ 120
           SLFAIVNLHDLFAHLAGIDYRLPLLVQYDAQLFFVEFAVPFLQAIGSLLLSFAALFLLIQ
Sbjct: 61  SLFAIVNLHDLFAHLAGIDYRLPLLVQYDAQLFFVEFAVPFLQAIGSLLLSFAALFLLIQ 120

Query: 121 EKKGHDYHKLEKHASNMLIAGPALWMLGSIHNSCQIYERADAHVQILQQSVHIPFLIGSL 180
           EKKGHDYHKLEKHASNMLIAGPALWMLGSIHNSCQIYERADAHVQILQQSVHIPFLIGSL
Sbjct: 121 EKKGHDYHKLEKHASNMLIAGPALWMLGSIHNSCQIYERADAHVQILQQSVHIPFLIGSL 180

Query: 181 LFFVAAVLNSYEQVGLAHHGLKLLGKNWIWLGIFGSLSFLLGGLANVLKVFKMQQFEGLR 240
           LFFVAAVLNSYEQVGLAHHGLKLLGKNWIWLGIFGSLSFLLGGLANVLKVFKMQQFEGLR
Sbjct: 181 LFFVAAVLNSYEQVGLAHHGLKLLGKNWIWLGIFGSLSFLLGGLANVLKVFKMQQFEGLR 240

Query: 241 LEKLRGGANERLLGEREGRIPLILEDQGRRKRHSDEERGRVEARPTPYKDVLVGQSP 297
           LEKLRGGANERLLGEREGRIPLILEDQGRRKRHSDEERGRVEARPTPYKDVLVGQSP
Sbjct: 241 LEKLRGGANERLLGEREGRIPLILEDQGRRKRHSDEERGRVEARPTPYKDVLVGQSP 297

[Close]

BLAST of Cucsat.G21022 vs. NCBI nr
Match: TYK05966.1 (polypyrimidine tract-binding protein-like protein 2 [Cucumis melo var. makuwa])

HSP 1 Score: 553 bits (1425), Expect = 6.54e-198
Identity = 289/297 (97.31%), Postives = 290/297 (97.64%), Query Frame = 0


Query: 1   MVKLVSARDFRVYGPRSVRNRAEYINAGLYLFATILLLGGFVAQLSREPKSGLALILLAT 60
           MVKLVSARDFRVYGPR +RNRAEYINAGLYLFATILLLGGFVAQLSREPKSGLALILLAT
Sbjct: 1   MVKLVSARDFRVYGPRPLRNRAEYINAGLYLFATILLLGGFVAQLSREPKSGLALILLAT 60

Query: 61  SLFAIVNLHDLFAHLAGIDYRLPLLVQYDAQLFFVEFAVPFLQAIGSLLLSFAALFLLIQ 120
           SL AIVNLHDLFAHLAGIDYRLPLLVQYDAQLFFVEFAVPFLQAIGSLLLS AALFLLIQ
Sbjct: 61  SLIAIVNLHDLFAHLAGIDYRLPLLVQYDAQLFFVEFAVPFLQAIGSLLLSLAALFLLIQ 120

Query: 121 EKKGHDYHKLEKHASNMLIAGPALWMLGSIHNSCQIYERADAHVQILQQSVHIPFLIGSL 180
           EKKGHDY KLEKHASNMLIAGPALWMLGSIHNSCQIYERAD HVQILQQSVHIPFLIGSL
Sbjct: 121 EKKGHDYDKLEKHASNMLIAGPALWMLGSIHNSCQIYERADGHVQILQQSVHIPFLIGSL 180

Query: 181 LFFVAAVLNSYEQVGLAHHGLKLLGKNWIWLGIFGSLSFLLGGLANVLKVFKMQQFEGLR 240
           LFFVAAVLNSYEQVGLAHHGLKLLGKNWIWLGIFGSLS LLGGLANVLKVFKMQQFEGLR
Sbjct: 181 LFFVAAVLNSYEQVGLAHHGLKLLGKNWIWLGIFGSLSLLLGGLANVLKVFKMQQFEGLR 240

Query: 241 LEKLRGGANERLLGEREGRIPLILEDQGRRKRHSDEERGRVEARPTPYKDVLVGQSP 297
           LEKLRGGANERLLGEREGRIPLILEDQGRRKRHSDEERGR EARPTPYKDVLVGQSP
Sbjct: 241 LEKLRGGANERLLGEREGRIPLILEDQGRRKRHSDEERGR-EARPTPYKDVLVGQSP 296

[Close]

BLAST of Cucsat.G21022 vs. NCBI nr
Match: XP_008437579.1 (PREDICTED: LOW QUALITY PROTEIN: polypyrimidine tract-binding protein homolog 2 [Cucumis melo])

HSP 1 Score: 551 bits (1420), Expect = 2.36e-190
Identity = 288/297 (96.97%), Postives = 290/297 (97.64%), Query Frame = 0


Query: 1   MVKLVSARDFRVYGPRSVRNRAEYINAGLYLFATILLLGGFVAQLSREPKSGLALILLAT 60
           MVKLVSARDFRVYGPR +RNRAEYINAGLYLFATILLLGGFVAQLSREPKSGLALILLAT
Sbjct: 1   MVKLVSARDFRVYGPRPLRNRAEYINAGLYLFATILLLGGFVAQLSREPKSGLALILLAT 60

Query: 61  SLFAIVNLHDLFAHLAGIDYRLPLLVQYDAQLFFVEFAVPFLQAIGSLLLSFAALFLLIQ 120
           SL AIVNLHDLFAHLAGID+RLPLLVQYDAQLFFVEFAVPFLQAIGSLLLS AALFLLIQ
Sbjct: 61  SLIAIVNLHDLFAHLAGIDHRLPLLVQYDAQLFFVEFAVPFLQAIGSLLLSLAALFLLIQ 120

Query: 121 EKKGHDYHKLEKHASNMLIAGPALWMLGSIHNSCQIYERADAHVQILQQSVHIPFLIGSL 180
           EKKGHDY KLEKHASNMLIAGPALWMLGSIHNSCQIYERAD HVQILQQSVHIPFLIGSL
Sbjct: 121 EKKGHDYDKLEKHASNMLIAGPALWMLGSIHNSCQIYERADGHVQILQQSVHIPFLIGSL 180

Query: 181 LFFVAAVLNSYEQVGLAHHGLKLLGKNWIWLGIFGSLSFLLGGLANVLKVFKMQQFEGLR 240
           LFFVAAVLNSYEQVGLAHHGLKLLGKNWIWLGIFGSLS LLGGLANVLKVFKMQQFEGLR
Sbjct: 181 LFFVAAVLNSYEQVGLAHHGLKLLGKNWIWLGIFGSLSLLLGGLANVLKVFKMQQFEGLR 240

Query: 241 LEKLRGGANERLLGEREGRIPLILEDQGRRKRHSDEERGRVEARPTPYKDVLVGQSP 297
           LEKLRGGANERLLGEREGRIPLILEDQGRRKRHSDEERGR EARPTPYKDVLVGQSP
Sbjct: 241 LEKLRGGANERLLGEREGRIPLILEDQGRRKRHSDEERGR-EARPTPYKDVLVGQSP 296

[Close]

BLAST of Cucsat.G21022 vs. NCBI nr
Match: KAA0042561.1 (polypyrimidine tract-binding protein-like protein 2 [Cucumis melo var. makuwa])

HSP 1 Score: 543 bits (1400), Expect = 2.83e-187
Identity = 284/293 (96.93%), Postives = 285/293 (97.27%), Query Frame = 0


Query: 1   MVKLVSARDFRVYGPRSVRNRAEYINAGLYLFATILLLGGFVAQLSREPKSGLALILLAT 60
           MVKLVSARDFRVYGPR +RNRAEYINAGLYLFATILLLGGFVAQLSREPKSGLALILLAT
Sbjct: 1   MVKLVSARDFRVYGPRPLRNRAEYINAGLYLFATILLLGGFVAQLSREPKSGLALILLAT 60

Query: 61  SLFAIVNLHDLFAHLAGIDYRLPLLVQYDAQLFFVEFAVPFLQAIGSLLLSFAALFLLIQ 120
           SL AIVNLHDLFAHLAGIDYRLPLLVQYDAQLFFVEFAVPFLQAIGSLLLS AALFLLIQ
Sbjct: 61  SLIAIVNLHDLFAHLAGIDYRLPLLVQYDAQLFFVEFAVPFLQAIGSLLLSLAALFLLIQ 120

Query: 121 EKKGHDYHKLEKHASNMLIAGPALWMLGSIHNSCQIYERADAHVQILQQSVHIPFLIGSL 180
           EKKGHDY KLEKHASNMLIAGPALWMLGSIHNSCQIYERAD HVQILQQSVHIPFLIGSL
Sbjct: 121 EKKGHDYDKLEKHASNMLIAGPALWMLGSIHNSCQIYERADGHVQILQQSVHIPFLIGSL 180

Query: 181 LFFVAAVLNSYEQVGLAHHGLKLLGKNWIWLGIFGSLSFLLGGLANVLKVFKMQQFEGLR 240
           LFFVAAVLNSYEQVGLAHHGLKLLGKNWIWLGIFGSLS LLGGLANVLKVFKMQQFEGLR
Sbjct: 181 LFFVAAVLNSYEQVGLAHHGLKLLGKNWIWLGIFGSLSLLLGGLANVLKVFKMQQFEGLR 240

Query: 241 LEKLRGGANERLLGEREGRIPLILEDQGRRKRHSDEERGRVEARPTPYKDVLV 293
           LEKLRGGANERLLGEREGRIPLILEDQGRRKRHSDEERGR EARPTPYKDVL 
Sbjct: 241 LEKLRGGANERLLGEREGRIPLILEDQGRRKRHSDEERGR-EARPTPYKDVLA 292

[Close]

BLAST of Cucsat.G21022 vs. ExPASy TrEMBL
Match: A0A0A0KJH6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G139580 PE=4 SV=1)

HSP 1 Score: 575 bits (1481), Expect = 9.57e-207
Identity = 297/297 (100.00%), Postives = 297/297 (100.00%), Query Frame = 0


Query: 1   MVKLVSARDFRVYGPRSVRNRAEYINAGLYLFATILLLGGFVAQLSREPKSGLALILLAT 60
           MVKLVSARDFRVYGPRSVRNRAEYINAGLYLFATILLLGGFVAQLSREPKSGLALILLAT
Sbjct: 1   MVKLVSARDFRVYGPRSVRNRAEYINAGLYLFATILLLGGFVAQLSREPKSGLALILLAT 60

Query: 61  SLFAIVNLHDLFAHLAGIDYRLPLLVQYDAQLFFVEFAVPFLQAIGSLLLSFAALFLLIQ 120
           SLFAIVNLHDLFAHLAGIDYRLPLLVQYDAQLFFVEFAVPFLQAIGSLLLSFAALFLLIQ
Sbjct: 61  SLFAIVNLHDLFAHLAGIDYRLPLLVQYDAQLFFVEFAVPFLQAIGSLLLSFAALFLLIQ 120

Query: 121 EKKGHDYHKLEKHASNMLIAGPALWMLGSIHNSCQIYERADAHVQILQQSVHIPFLIGSL 180
           EKKGHDYHKLEKHASNMLIAGPALWMLGSIHNSCQIYERADAHVQILQQSVHIPFLIGSL
Sbjct: 121 EKKGHDYHKLEKHASNMLIAGPALWMLGSIHNSCQIYERADAHVQILQQSVHIPFLIGSL 180

Query: 181 LFFVAAVLNSYEQVGLAHHGLKLLGKNWIWLGIFGSLSFLLGGLANVLKVFKMQQFEGLR 240
           LFFVAAVLNSYEQVGLAHHGLKLLGKNWIWLGIFGSLSFLLGGLANVLKVFKMQQFEGLR
Sbjct: 181 LFFVAAVLNSYEQVGLAHHGLKLLGKNWIWLGIFGSLSFLLGGLANVLKVFKMQQFEGLR 240

Query: 241 LEKLRGGANERLLGEREGRIPLILEDQGRRKRHSDEERGRVEARPTPYKDVLVGQSP 297
           LEKLRGGANERLLGEREGRIPLILEDQGRRKRHSDEERGRVEARPTPYKDVLVGQSP
Sbjct: 241 LEKLRGGANERLLGEREGRIPLILEDQGRRKRHSDEERGRVEARPTPYKDVLVGQSP 297

[Close]

BLAST of Cucsat.G21022 vs. ExPASy TrEMBL
Match: A0A5D3C6J8 (Polypyrimidine tract-binding protein-like protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold376G00600 PE=4 SV=1)

HSP 1 Score: 553 bits (1425), Expect = 3.17e-198
Identity = 289/297 (97.31%), Postives = 290/297 (97.64%), Query Frame = 0


Query: 1   MVKLVSARDFRVYGPRSVRNRAEYINAGLYLFATILLLGGFVAQLSREPKSGLALILLAT 60
           MVKLVSARDFRVYGPR +RNRAEYINAGLYLFATILLLGGFVAQLSREPKSGLALILLAT
Sbjct: 1   MVKLVSARDFRVYGPRPLRNRAEYINAGLYLFATILLLGGFVAQLSREPKSGLALILLAT 60

Query: 61  SLFAIVNLHDLFAHLAGIDYRLPLLVQYDAQLFFVEFAVPFLQAIGSLLLSFAALFLLIQ 120
           SL AIVNLHDLFAHLAGIDYRLPLLVQYDAQLFFVEFAVPFLQAIGSLLLS AALFLLIQ
Sbjct: 61  SLIAIVNLHDLFAHLAGIDYRLPLLVQYDAQLFFVEFAVPFLQAIGSLLLSLAALFLLIQ 120

Query: 121 EKKGHDYHKLEKHASNMLIAGPALWMLGSIHNSCQIYERADAHVQILQQSVHIPFLIGSL 180
           EKKGHDY KLEKHASNMLIAGPALWMLGSIHNSCQIYERAD HVQILQQSVHIPFLIGSL
Sbjct: 121 EKKGHDYDKLEKHASNMLIAGPALWMLGSIHNSCQIYERADGHVQILQQSVHIPFLIGSL 180

Query: 181 LFFVAAVLNSYEQVGLAHHGLKLLGKNWIWLGIFGSLSFLLGGLANVLKVFKMQQFEGLR 240
           LFFVAAVLNSYEQVGLAHHGLKLLGKNWIWLGIFGSLS LLGGLANVLKVFKMQQFEGLR
Sbjct: 181 LFFVAAVLNSYEQVGLAHHGLKLLGKNWIWLGIFGSLSLLLGGLANVLKVFKMQQFEGLR 240

Query: 241 LEKLRGGANERLLGEREGRIPLILEDQGRRKRHSDEERGRVEARPTPYKDVLVGQSP 297
           LEKLRGGANERLLGEREGRIPLILEDQGRRKRHSDEERGR EARPTPYKDVLVGQSP
Sbjct: 241 LEKLRGGANERLLGEREGRIPLILEDQGRRKRHSDEERGR-EARPTPYKDVLVGQSP 296

[Close]

BLAST of Cucsat.G21022 vs. ExPASy TrEMBL
Match: A0A1S3AUZ4 (LOW QUALITY PROTEIN: polypyrimidine tract-binding protein homolog 2 OS=Cucumis melo OX=3656 GN=LOC103482951 PE=4 SV=1)

HSP 1 Score: 551 bits (1420), Expect = 1.14e-190
Identity = 288/297 (96.97%), Postives = 290/297 (97.64%), Query Frame = 0


Query: 1   MVKLVSARDFRVYGPRSVRNRAEYINAGLYLFATILLLGGFVAQLSREPKSGLALILLAT 60
           MVKLVSARDFRVYGPR +RNRAEYINAGLYLFATILLLGGFVAQLSREPKSGLALILLAT
Sbjct: 1   MVKLVSARDFRVYGPRPLRNRAEYINAGLYLFATILLLGGFVAQLSREPKSGLALILLAT 60

Query: 61  SLFAIVNLHDLFAHLAGIDYRLPLLVQYDAQLFFVEFAVPFLQAIGSLLLSFAALFLLIQ 120
           SL AIVNLHDLFAHLAGID+RLPLLVQYDAQLFFVEFAVPFLQAIGSLLLS AALFLLIQ
Sbjct: 61  SLIAIVNLHDLFAHLAGIDHRLPLLVQYDAQLFFVEFAVPFLQAIGSLLLSLAALFLLIQ 120

Query: 121 EKKGHDYHKLEKHASNMLIAGPALWMLGSIHNSCQIYERADAHVQILQQSVHIPFLIGSL 180
           EKKGHDY KLEKHASNMLIAGPALWMLGSIHNSCQIYERAD HVQILQQSVHIPFLIGSL
Sbjct: 121 EKKGHDYDKLEKHASNMLIAGPALWMLGSIHNSCQIYERADGHVQILQQSVHIPFLIGSL 180

Query: 181 LFFVAAVLNSYEQVGLAHHGLKLLGKNWIWLGIFGSLSFLLGGLANVLKVFKMQQFEGLR 240
           LFFVAAVLNSYEQVGLAHHGLKLLGKNWIWLGIFGSLS LLGGLANVLKVFKMQQFEGLR
Sbjct: 181 LFFVAAVLNSYEQVGLAHHGLKLLGKNWIWLGIFGSLSLLLGGLANVLKVFKMQQFEGLR 240

Query: 241 LEKLRGGANERLLGEREGRIPLILEDQGRRKRHSDEERGRVEARPTPYKDVLVGQSP 297
           LEKLRGGANERLLGEREGRIPLILEDQGRRKRHSDEERGR EARPTPYKDVLVGQSP
Sbjct: 241 LEKLRGGANERLLGEREGRIPLILEDQGRRKRHSDEERGR-EARPTPYKDVLVGQSP 296

[Close]

BLAST of Cucsat.G21022 vs. ExPASy TrEMBL
Match: A0A5A7TLW2 (Polypyrimidine tract-binding protein-like protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold44G00560 PE=4 SV=1)

HSP 1 Score: 543 bits (1400), Expect = 1.37e-187
Identity = 284/293 (96.93%), Postives = 285/293 (97.27%), Query Frame = 0


Query: 1   MVKLVSARDFRVYGPRSVRNRAEYINAGLYLFATILLLGGFVAQLSREPKSGLALILLAT 60
           MVKLVSARDFRVYGPR +RNRAEYINAGLYLFATILLLGGFVAQLSREPKSGLALILLAT
Sbjct: 1   MVKLVSARDFRVYGPRPLRNRAEYINAGLYLFATILLLGGFVAQLSREPKSGLALILLAT 60

Query: 61  SLFAIVNLHDLFAHLAGIDYRLPLLVQYDAQLFFVEFAVPFLQAIGSLLLSFAALFLLIQ 120
           SL AIVNLHDLFAHLAGIDYRLPLLVQYDAQLFFVEFAVPFLQAIGSLLLS AALFLLIQ
Sbjct: 61  SLIAIVNLHDLFAHLAGIDYRLPLLVQYDAQLFFVEFAVPFLQAIGSLLLSLAALFLLIQ 120

Query: 121 EKKGHDYHKLEKHASNMLIAGPALWMLGSIHNSCQIYERADAHVQILQQSVHIPFLIGSL 180
           EKKGHDY KLEKHASNMLIAGPALWMLGSIHNSCQIYERAD HVQILQQSVHIPFLIGSL
Sbjct: 121 EKKGHDYDKLEKHASNMLIAGPALWMLGSIHNSCQIYERADGHVQILQQSVHIPFLIGSL 180

Query: 181 LFFVAAVLNSYEQVGLAHHGLKLLGKNWIWLGIFGSLSFLLGGLANVLKVFKMQQFEGLR 240
           LFFVAAVLNSYEQVGLAHHGLKLLGKNWIWLGIFGSLS LLGGLANVLKVFKMQQFEGLR
Sbjct: 181 LFFVAAVLNSYEQVGLAHHGLKLLGKNWIWLGIFGSLSLLLGGLANVLKVFKMQQFEGLR 240

Query: 241 LEKLRGGANERLLGEREGRIPLILEDQGRRKRHSDEERGRVEARPTPYKDVLV 293
           LEKLRGGANERLLGEREGRIPLILEDQGRRKRHSDEERGR EARPTPYKDVL 
Sbjct: 241 LEKLRGGANERLLGEREGRIPLILEDQGRRKRHSDEERGR-EARPTPYKDVLA 292

[Close]

BLAST of Cucsat.G21022 vs. ExPASy TrEMBL
Match: A0A6J1K7T0 (uncharacterized protein LOC111490949 OS=Cucurbita maxima OX=3661 GN=LOC111490949 PE=4 SV=1)

HSP 1 Score: 489 bits (1259), Expect = 6.22e-173
Identity = 253/296 (85.47%), Postives = 269/296 (90.88%), Query Frame = 0


Query: 1   MVKLVSARDFRVYGPRSVRNRAEYINAGLYLFATILLLGGFVAQLSREPKSGLALILLAT 60
           MVKL SARDFR YGPR+ R+RAEYINAGLYLFATILLLGGFVAQLSRE KSGLALI+LA 
Sbjct: 1   MVKLASARDFRAYGPRAARSRAEYINAGLYLFATILLLGGFVAQLSREAKSGLALIVLAA 60

Query: 61  SLFAIVNLHDLFAHLAGIDYRLPLLVQYDAQLFFVEFAVPFLQAIGSLLLSFAALFLLIQ 120
           +L  IVN+HDLFAHLAGIDYRLPLL QYD QL FVEF+VPFLQAIGSLLLS   LFLLIQ
Sbjct: 61  ALILIVNVHDLFAHLAGIDYRLPLLAQYDVQLLFVEFSVPFLQAIGSLLLSLGTLFLLIQ 120

Query: 121 EKKGHDYHKLEKHASNMLIAGPALWMLGSIHNSCQIYERADAHVQILQQSVHIPFLIGSL 180
           E+KGHDY+KLEKH  +MLIAGPALW+LGSI NSCQIYERAD HVQILQQSVHIPFLIGSL
Sbjct: 121 EQKGHDYYKLEKHVLDMLIAGPALWILGSILNSCQIYERADGHVQILQQSVHIPFLIGSL 180

Query: 181 LFFVAAVLNSYEQVGLAHHGLKLLGKNWIWLGIFGSLSFLLGGLANVLKVFKMQQFEGLR 240
           LFFVAAVLN +EQ GLAH GLKLLGKNW+W GIFGSLS LLGGL NV KVFKMQQF+GLR
Sbjct: 181 LFFVAAVLNGFEQAGLAHRGLKLLGKNWVWFGIFGSLSLLLGGLGNVHKVFKMQQFDGLR 240

Query: 241 LEKLRGGANERLLGEREGRIPLILEDQGRRKRHSDEERGRVEARPTPYKDVLVGQS 296
           LEKLRGGANERLLGEREGRIPLILEDQGRRKR SDEE+GR +A PTPYKDVLVGQ+
Sbjct: 241 LEKLRGGANERLLGEREGRIPLILEDQGRRKRLSDEEKGR-QASPTPYKDVLVGQT 295

The following BLAST results are available for this feature:

BLAST of Cucsat.G21022 vs.


Match Name	E-value	Identity	Description

BLAST of Cucsat.G21022 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN49880.1	1.98e-206	100.00	hypothetical protein Csa_000601 [Cucumis sativus]	[more]
XP_031741225.1	1.17e-198	100.00	polypyrimidine tract-binding protein homolog 2 [Cucumis sativus]	[more]
TYK05966.1	6.54e-198	97.31	polypyrimidine tract-binding protein-like protein 2 [Cucumis melo var. makuwa]	[more]
XP_008437579.1	2.36e-190	96.97	PREDICTED: LOW QUALITY PROTEIN: polypyrimidine tract-binding protein homolog 2 [...	[more]
KAA0042561.1	2.83e-187	96.93	polypyrimidine tract-binding protein-like protein 2 [Cucumis melo var. makuwa]	[more]

BLAST of Cucsat.G21022 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KJH6	9.57e-207	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G139580 PE=4 SV=1	[more]
A0A5D3C6J8	3.17e-198	97.31	Polypyrimidine tract-binding protein-like protein 2 OS=Cucumis melo var. makuwa ...	[more]
A0A1S3AUZ4	1.14e-190	96.97	LOW QUALITY PROTEIN: polypyrimidine tract-binding protein homolog 2 OS=Cucumis m...	[more]
A0A5A7TLW2	1.37e-187	96.93	Polypyrimidine tract-binding protein-like protein 2 OS=Cucumis melo var. makuwa ...	[more]
A0A6J1K7T0	6.22e-173	85.47	uncharacterized protein LOC111490949 OS=Cucurbita maxima OX=3661 GN=LOC111490949...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 266..297
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 266..285
None	No IPR available	PANTHER	PTHR34967	OS02G0257200 PROTEIN	coord: 1..296

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsat.G21022.T1	Cucsat.G21022.T1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003723	RNA binding