Cucsat.G20907 (gene) Cucumber (B10) v3

Overview


Name	Cucsat.G20907
Type	gene
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	Unknown protein
Location	ctg907: 107359 .. 110357 (-)
RNA-Seq Expression	Cucsat.G20907
Synteny	Cucsat.G20907

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TAATGGTAAAGTCATTATTTGAAAAGCCATAGAGAGGTATGACCAATCTGGAATTTTTCATAATGCTTGGAGTCGCCATCTTTGTTAGGATCAACCAATTTCAAATTAGATGAATGAAAAGGCAAAAAGCAAAAAGCAAAAAGTGAAGAAACTTGGCTTGCTAAATTTTTTGTCTAACTTGTGAAAAAGCAATCCTAATCTTCTCTGTTCAAAAGGGTTTTGTGATCTTTTTGAAACCATTCACATGATTGGTGAGCCACTTTAATTATGAACCCCCATTACCTCGATCTCAGCTCCAAAAATGGTCCTCAATCGCTTGCCAATGCCGTCGCACGGGCGGCTGAAAGCCCTCTTCCACCACCCACTCGTGCGCTCTTGATGTAAATTCAAAAACCCTTTTATGTTTTTGGATCTCTCTTTATATCTATCTCTCTTTTTATGCACTTTTATCCGTTTCTGCAATTCCATTTTCTCTATGATTGTTGAAAAGACTGAGATCCCTTTTTGTGTGGGACTACTGATTACTGGGTAGTGATATGATCATGTGGGGTACTTTATATACTACGAATATGGCCAATCAAGGCACCTATATCTCATCATCATCGTCATGATTGTCTATGATGGAATACCTTGAATTCGTTATTTGTTTCTCCAAATATCCAAGCATTTAGGGTCTTACTCTATGTTATAAATTGTATTCATATTTATGTTATTTACATTGTTTATGATTTTGATTCTAGAGTTTAGAGAAGTACTAAATCTCTATGCAGATTCTCTATGTTTTTGTTTTTCCTTGATTGTTGATTGTTGATTCCGTAGGACTCTGGATTCTTTTGATGGTTCAAAGATGATTAGAGTTTTGAGTGGGCTTTTGAATTATTGTTATCCCTTTGTATTATGGTACTTTTGGTTTTGGGGGGTAGTCTTTTTTTAAATCTGTGGCTATGGTTTTGTTGGACTCACTTGCATAACCCATTCCAACGCGTCCCTACTCTGAAATCTGATTCAAGCTCTTTTTCCACAAACCCGAAATTTGTTTGAGATATCAGTCTCTTTTCTCGTGGGGTTGGCCCGGCTCTGAATTAAAGTTCTTATGAGCTTTTTCATTTTCCCTTGTGAAGTTCTTATGAAGCTTCACTTTCAGTTTTACTCAGCAATCTTGTGGTTGGAATTCATAATGTTAAGAGTAAGATGATGATGATGAGAGATAGAGAGATAGAGAGAGAGGTGGGGAAAGAGTTCTGTGGTATGTCAATTCTAGGACAAGTTCGGTTATGGAAATATGCCAATTTCTAGCCTCAACTTTATGGAAAAATTTGAACCTTTTTCAATTGATTTTCTGAAATATTTATGTTAAGGTTTAATTAAACAGTGAAACCTATCTGTCTTTGATGAATGAACTTTTTCATAGCATTGTCAGCAAAGCGACTGAAAAAAAAATTCTGTTCTATGATGTTCTTCATTTATTGATTCATTCAATTCTTTGCATTAATAACACATGAAAAAGCGTAGTCTATGCACAAGCCAAGGAGGTTTTTAAAATTATTATAATTCACGATCAAGAATAGTGTATAAGAACAATTAATCATTGGCCTTTTTACATTAAATACCAACTTCATTTCTCTGAGATTTTGGAAGCCATGCAAGCAGTTTAAATGATTGACACCTCTGTGTGTGGATATTTTACAGAAATCCGTGTTTGCAAGCAAAAGAAGATTTACTGTTAATCTCAACTCTTGACATTGGTTTTATCTTCTTTAGCAATGGAGTTCTTACAGTGAGCAATCGCAGCTTGAATTGCAGATTGCAACTCTTCCATGGTGCTATCACTTGTAGCATAACTCATAGATGGAGTCGCAACGAGAAGGCCGCTATTTGTCGGGGATGTTCTCATGGATGCTGGTGCTGAGAATTCTCCTCTTCTTCCTCTCAATTCTTGCTTGTTTCGAGGATTCAAATTGCCCGAAAATGAATAAGCTTGACGACGAATATGCAGGTTCTCTTTCCTCCATCTGAAGAACAACAATGGCCTAACCACTCTTGCATATCGTTTTAGAACCTGACTAACATCAAACCCCAACTTCCTCTTGTGCTTTGCTTTATCGTCTTGCTCGGTAATCTCGCATCCTTTTCGCCATCTCGAAAATCCAAACAACGAGAAAGGCTTGGATTTGGTTCTCCCACCTGTTTCAGTAGGTTCAGTTTCCAGATTCTTGACGCTGCTGGTGCTACAACTTGAGCTGTCCTTGAGGGGCTCTTCATTGTCCCATATCTCTTTGATTGGGATGGTGAAACTGTCCATGGAATTGGTGGAGGAACGAGGCGAAGAAGGAAGATGGGACAGGAGATGGAGGGGAAGCAAGTGGCCATGGAAGAAGATATCATCTGCAGGAGACAAATCAATGGCAAAGGAAGGTGGAGTTGGTTTGTTTCTGTCAGAAGAGGAAGAATGGAGAGAAATTGTGAAGGAAAATTCATGTGAAGGAGAAGAAGAAGCTGAAGGAAGAAGAGGGGAAGTTGTTGATGATGAGTCTTGAATTGGTTGTTGGGTTTCTTTTTCTTCAACCTTAAACTTCTCTGTTTCTTGCTTCTTGTACTCTGCAAAATTCTCTGCTGTGGTATTGTGGTTCCGATTGGAGTTCATAATTCAGATTCTTAGATACTGTGTCTCTAAATTCAACTTTTGGAGAAAGATAAGGAGATTATGAAGTAGTGGAGAGATAGAAAGAGAGAGAGAGAGAGAGAGAAAGGATCTTGTCTATTGACTTGCCTGAAAGCTGAGAATGGAATGTCTTTTGTGGAAATAGCAACCCATTGAATTTAGGTTTGGTTTAAGTACATTTTTCCTCTTCATGTACAGAAATATGGGTCCCCAATTCAATCCAACAGCTATTAAAGTACTAAGTACTTTGATCATAGGGATCCCCTTCAGAAATAGCTTTTTTTCTGACATTATTATATCTTCAATAAATTAGAAAAATACTTCGGAAGATCAATGC

Coding sequence (CDS)

ATGAACCCCCATTACCTCGATCTCAGCTCCAAAAATGGTCCTCAATCGCTTGCCAATGCCGTCGCACGGGCGGCTGAAAGCCCTCTTCCACCACCCACTCGTGCGCTCTTGATAAATCCGTGTTTGCAAGCAAAAGAAGATTTACTGTTAATCTCAACTCTTGACATTGGTTTTATCTTCTTTAGCAATGGAGTTCTTACAGTGAGCAATCGCAGCTTGAATTGCAGATTGCAACTCTTCCATGGTGCTATCACTTGTAGCATAACTCATAGATGGAGTCGCAACGAGAAGGCCGCTATTTGTCGGGGATGTTCTCATGGATGCTGGTGCTGA

Protein sequence

MNPHYLDLSSKNGPQSLANAVARAAESPLPPPTRALLINPCLQAKEDLLLISTLDIGFIFFSNGVLTVSNRSLNCRLQLFHGAITCSITHRWSRNEKAAICRGCSHGCWC

Homology

[Close]

BLAST of Cucsat.G20907 vs. NCBI nr
Match: KGN55184.1 (hypothetical protein Csa_012872 [Cucumis sativus])

HSP 1 Score: 77.8 bits (190), Expect = 4.84e-16
Identity = 45/73 (61.64%), Postives = 55/73 (75.34%), Query Frame = 0


Query: 1  MNPHYLDLSSKNGPQSLANAVARAAESPLPPPTRALLINPCLQAKEDLLLISTLDIGFIF 60
          MNPHYLDLSSKNGPQSLANAVARAAESPLPPPTRALLI+   +A   +LL S L +G   
Sbjct: 1  MNPHYLDLSSKNGPQSLANAVARAAESPLPPPTRALLIS--YEASLSVLL-SNLVVGIHN 60

Query: 61 FSNGVLTVSNRSL 73
            + ++ + +R +
Sbjct: 61 VKSKMMMMRDREI 70

[Close]

BLAST of Cucsat.G20907 vs. ExPASy TrEMBL
Match: A0A0A0L2C1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G639230 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 2.35e-16
Identity = 45/73 (61.64%), Postives = 55/73 (75.34%), Query Frame = 0


Query: 1  MNPHYLDLSSKNGPQSLANAVARAAESPLPPPTRALLINPCLQAKEDLLLISTLDIGFIF 60
          MNPHYLDLSSKNGPQSLANAVARAAESPLPPPTRALLI+   +A   +LL S L +G   
Sbjct: 1  MNPHYLDLSSKNGPQSLANAVARAAESPLPPPTRALLIS--YEASLSVLL-SNLVVGIHN 60

Query: 61 FSNGVLTVSNRSL 73
            + ++ + +R +
Sbjct: 61 VKSKMMMMRDREI 70

The following BLAST results are available for this feature:

BLAST of Cucsat.G20907 vs.


Match Name	E-value	Identity	Description

BLAST of Cucsat.G20907 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN55184.1	4.84e-16	61.64	hypothetical protein Csa_012872 [Cucumis sativus]	[more]

BLAST of Cucsat.G20907 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L2C1	2.35e-16	61.64	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G639230 PE=4 SV=1	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsat.G20907.T2	Cucsat.G20907.T2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane