Cucsat.G2014 (gene) Cucumber (B10) v3

Overview


Name	Cucsat.G2014
Type	gene
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	30S ribosomal protein S5
Location	ctg1002: 5508632 .. 5511212 (-)
RNA-Seq Expression	Cucsat.G2014
Synteny	Cucsat.G2014

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TAGTTTCTTCGCACATGATTACTTCTTCGCCTTACCCGTGTAGAGTCCATTGGGATAAGCCTCCATCTCCGAACCCACAAACCTTCTCAATCTTTCCTTCAATGGCTTCTTCGACTCTCGTCCCCATTTCCTCTATTTCTCTTCGTTCTTCTCCTTCCCACCGCCTCTCAATTCCACTATTCAAGCCTTTCCCCCTCCTCCACTCCACTGTATTCCTACTCCCAATCTCCTCCTCCTCCTCTTCCTCCATTCTCTCTGCAACTCGGGCCAAATCCTCTGACATCGACACCACCTTCTTCGACAACGTCAATCCCCAAGAAGACATCGTTTACGACCCTCCCGAAGTCCCCGAAGGCTTCGTCCCTCCTCCCTCCTTCGATGAGGGCCCTATCGAAACCGAGGAAGAAATTGCCGCTGGTTACGAGGAGATCTATGGCCCCGCTTACAGTGGAGTCAGTGTTCTCGGAAACGACATTTATGTAATGGATTCTAAGGTCAAGAAAGCGGGCGGGTTCGGCTCCAAGGCCAAGAAGGACAAGCCGCGAGATGGGTTCGATGAGCGGGTTGTCCAAGTTCGGAGGGTTACTAAAGTGGTTAAAGGTGGGAAACAGTTACATTTTAGGGCAATTGTTGTTGTGGGTGATAAACAGGGCCAAGTGGGTGTTGGTGTTGGTAAAGCTAAGGAAGTCATCACCGCTGTTCAGAAATCGGCAGTTAATGCTCGCCGGAACATTGTCACCGTTCCCATGACCAAGTATCTAACATTTCCCCACAGGTTTGTGACTATTTTCGATTTGCAAACTGGAATTGTTTGATTGGAGTTTCTGTAGCTGCTCTCTTGTTAAGCTTTTGGTTTGCTGATAATGGGAATGCATTCAATTAGGAGTATGAAACTTGAACCTAATGTGTTGATAAGTTAAGCATTACCATTTGAAAGGTGGATGGTTCAATCCCACCTCTGAAATGGGATTTAAGGAAGAGTAGAATTGGATGAGTACTTTGATTTATAGGAATCTTTGACTTAATTTTTCAACGGTTAATTGACATCTTTTTAAGTTAGTTAATACGAATTCTGTAATCTGTAGGCAGTTTAAACTTTGAATCCTCACTGCAAGTTGGTCATTGGAGGTATTTGCTGCTTCTGTGGCTGAATTTTGTAAATGTTTTTAGTTGTCTGTTGTAGATACTAGATGGTCTATTTCACAGTTTTGTCTACTCTGCTACAATTAAACTGTGGAGAACTTGTTGTTTCGACCGATCTTCCAGTGTTTCTATGGCTGAAAGAATCAGTACCCAATAAGCATATGGACAGCAAGAGATATATACACTGATTTCCTTTTTAGACGTAAATGTAAAGAGTTAAAAAGTATAGCAGATTCCAGGAAGTGAGAACCTAAATCAAATGAAGCTTCAAGTTATGAATGCTAGTGAAGTAATACTTTTGTCATATTCACATCTTGAGTTGCTGTGTGTTACTATAAGTGTTAGCTAAGGAGAGTTGAAAATTGTAGGTCGGAGGGAGATTATGGAGCAGCAAAAGTAATGCTAAGACCTGCTTCTCCTGGTACTGGTGTGATTGCTGGTGGAGCAGTGAGAATCGTCCTCGAAATGGCCGGTGTCGAGAATGCTTTAGGGAAGCAACTTGGAAGTAATAATGCCCTCAACAATGCTAGAGCAACAGTGGTCGCCGTGCAGAAGATGAAACAGTTTAGGGACGTTGCACAAGAGCGTGGCATCCCCATGGAAGAGTTGTGGAAGTGAAGAGGGAAATGGTGAGGCTTCATTTTTCCTTCGTCTCATTTTTTTCTTTCACGTATATTAGTGCATCTATTCTTGTAACTCAGTGTTGTAAAAACAACAGTCAGGCTTCGTTCCTTTTGTTTCTTACCTCATTTCTTTACAACATATATTAGTTGACCTGTCTTGAAAAGGAATTGTGTTTATTTTTCTGTTGCTTCATTCTGCAAGTGGGTATTATTAAAATCTGAAGGATGTTGAAGGAATAAGAACATTGTTGTAAGTTTTCAGCTATCTAAAAATGTCAAAAAGTGAAGAGACTAAATTTGTAACTATTCTATAATCTACTCCAATAAAGAATGCTAATACTTTGGGAGTTTGAAGGTTCAGATTTATTTAGTTTTAGTGTCTAAAATAAAAATTTTTGTTTTAATAATATTTTAGAATATATTATCCTCTTTAATAATTTCTAAAAAATTTCCATTCCTTCAGTAATGGTGTCTGCAGAGACATTGAGCAAGCAGAGTCTTCACAACTTCAGAGAAAAGAGAAGCTTTTGTAGACATCTTTATTCTATAGCTTTTCTGTATTCTAATAAGTTAAAACTCAATTTTGTATTTAATACATTTAGGAAAATCCATTGTTCAAAATTGAATCTAAACTCAAAATCTATAAACCAATTGATATTTTCCTAACATTATTGAAGTGACCACTTGGATTGGATTGGATTGGTATGGGTAGGAAACAATATTATTGTACAGCCTATGGGCTTGAATTTTTCAACTTCTTTTTGAAGTGTAATATTACTCTCCTGTCTCTCCACACATTTTGGAGTCCCCCATCC

Coding sequence (CDS)

GTTTCTTCGCACATGATTACTTCTTCGCCTTACCCGTGTAGAGTCCATTGGGATAAGCCTCCATCTCCGAACCCACAAACCTTCTCAATCTTTCCTTCAATGGCTTCTTCGACTCTCGTCCCCATTTCCTCTATTTCTCTTCGTTCTTCTCCTTCCCACCGCCTCTCAATTCCACTATTCAAGCCTTTCCCCCTCCTCCACTCCACTGTATTCCTACTCCCAATCTCCTCCTCCTCCTCTTCCTCCATTCTCTCTGCAACTCGGGCCAAATCCTCTGACATCGACACCACCTTCTTCGACAACGTCAATCCCCAAGAAGACATCGTTTACGACCCTCCCGAAGTCCCCGAAGGCTTCGTCCCTCCTCCCTCCTTCGATGAGGGCCCTATCGAAACCGAGGAAGAAATTGCCGCTGGTTACGAGGAGATCTATGGCCCCGCTTACAGTGGAGTCAGTGTTCTCGGAAACGACATTTATGTAATGGATTCTAAGGTCAAGAAAGCGGGCGGGTTCGGCTCCAAGGCCAAGAAGGACAAGCCGCGAGATGGGTTCGATGAGCGGGTTGTCCAAGTTCGGAGGGTTACTAAAGTGGTTAAAGGTGGGAAACAGTTACATTTTAGGGCAATTGTTGTTGTGGGTGATAAACAGGGCCAAGTGGGTGTTGGTGTTGGTAAAGCTAAGGAAGTCATCACCGCTGTTCAGAAATCGGCAGTTAATGCTCGCCGGAACATTGTCACCGTTCCCATGACCAAGTATCTAACATTTCCCCACAGGTCGGAGGGAGATTATGGAGCAGCAAAAGTAATGCTAAGACCTGCTTCTCCTGGTACTGGTGTGATTGCTGGTGGAGCAGTGAGAATCGTCCTCGAAATGGCCGGTGTCGAGAATGCTTTAGGGAAGCAACTTGGAAGTAATAATGCCCTCAACAATGCTAGAGCAACAGTGGTCGCCGTGCAGAAGATGAAACAGTTTAGGGACGTTGCACAAGAGCGTGGCATCCCCATGGAAGAGTTGTGGAAGTGA

Protein sequence

VSSHMITSSPYPCRVHWDKPPSPNPQTFSIFPSMASSTLVPISSISLRSSPSHRLSIPLFKPFPLLHSTVFLLPISSSSSSSILSATRAKSSDIDTTFFDNVNPQEDIVYDPPEVPEGFVPPPSFDEGPIETEEEIAAGYEEIYGPAYSGVSVLGNDIYVMDSKVKKAGGFGSKAKKDKPRDGFDERVVQVRRVTKVVKGGKQLHFRAIVVVGDKQGQVGVGVGKAKEVITAVQKSAVNARRNIVTVPMTKYLTFPHRSEGDYGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQFRDVAQERGIPMEELWK

Homology

[Close]

BLAST of Cucsat.G2014 vs. ExPASy Swiss-Prot
Match: Q9ST69 (30S ribosomal protein S5, chloroplastic OS=Spinacia oleracea OX=3562 GN=rps5 PE=1 SV=1)

HSP 1 Score: 400.6 bits (1028), Expect = 1.8e-110
Identity = 213/302 (70.53%), Postives = 248/302 (82.12%), Query Frame = 0


Query: 49  SSPSHRLSIPLFKPFPLLHSTVFLLPISSSSSSSI--LSATRA--------KSSDIDTTF 108
           ++PS      L +  PL  +T  LL +SSSS      LS+TR+        K  DID TF
Sbjct: 7   TTPSATSLTTLHRRIPLFPTTTTLLSLSSSSKPLFLSLSSTRSFPTHLYCIKKDDIDITF 66

Query: 109 FDNVNPQEDIVYDPPEVPEGFVPPPSFDEGPIETEEEIAAGYEEIYGPAYSGVSVLGNDI 168
           F+  NP E+I +DPPE PEG++PP + DE P E+EEEIA  YEE+YG AYSG S+LGND+
Sbjct: 67  FEQDNPDEEITFDPPEKPEGYIPPRAVDEPPFESEEEIALAYEELYGAAYSGESLLGNDV 126

Query: 169 YVMDSKVKKAGGFGSKAKKDKPRDGFDERVVQVRRVTKVVKGGKQLHFRAIVVVGDKQGQ 228
           Y MDSK+KKA GFGSK+KK+K RDGF+E VVQVRRVTKVVKGGK + FRAIVVVGDK+GQ
Sbjct: 127 YAMDSKIKKATGFGSKSKKEKIRDGFEENVVQVRRVTKVVKGGKHMRFRAIVVVGDKKGQ 186

Query: 229 VGVGVGKAKEVITAVQKSAVNARRNIVTVPMTKYLTFPHRSEGDYGAAKVMLRPASPGTG 288
           VGVGVGKAKEV++AVQK+AV+ARRNI+TVPMTKYLTFPHR+E DYGAA+VMLRPA+PGTG
Sbjct: 187 VGVGVGKAKEVVSAVQKAAVDARRNIITVPMTKYLTFPHRNEADYGAARVMLRPAAPGTG 246

Query: 289 VIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQFRDVAQERGIPMEEL 341
           VIAGGAVR VLEMAGVENALGKQLGSNNALNNARAT+VAVQ M+QF DVA++RGIPMEEL
Sbjct: 247 VIAGGAVRTVLEMAGVENALGKQLGSNNALNNARATIVAVQTMRQFSDVARDRGIPMEEL 306

[Close]

BLAST of Cucsat.G2014 vs. ExPASy Swiss-Prot
Match: P93014 (30S ribosomal protein S5, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=rps5 PE=2 SV=1)

HSP 1 Score: 389.8 bits (1000), Expect = 3.1e-107
Identity = 217/309 (70.23%), Postives = 246/309 (79.61%), Query Frame = 0


Query: 36  SSTLVPISSISLRSSPSHRLSIPLFKPFPLLHSTVFLLPISS--SSSSSILSATRAKSSD 95
           +S L  +SS+SL +  S  +S           ST  ++  SS  +   S L+  +A S+D
Sbjct: 4   ASALSSLSSLSLHTRTSSLIS---------SSSTKSIVSFSSFLNRRFSSLTLVKASSTD 63

Query: 96  IDTTFFDNVNPQ--EDIVYDPPEVPEGFVPPPSFDEGPIETEEEIAAGYEEIYGPAYSGV 155
            +T FF++  P+   ++V+DPP  PEGFV PP FDEG  ETEEEIA  +EE+YGPAYSG 
Sbjct: 64  TETIFFEDETPEITANVVFDPPIAPEGFVSPPYFDEGSDETEEEIATAFEELYGPAYSGE 123

Query: 156 SVLGNDIYVMDSKVKKAGGFGSKAKKDKPRDGFDERVVQVRRVTKVVKGGKQLHFRAIVV 215
           S+LG DIYVMDSK KK+ G G K KKDK RDGF+ERVVQVRRVTKVVKGGKQL FRAIVV
Sbjct: 124 SMLGKDIYVMDSKHKKSSGIGGKPKKDKIRDGFEERVVQVRRVTKVVKGGKQLKFRAIVV 183

Query: 216 VGDKQGQVGVGVGKAKEVITAVQKSAVNARRNIVTVPMTKYLTFPHRSEGDYGAAKVMLR 275
           VGDKQG VGVG  KAKEV+ AVQKSA++ARRNIV VPMTKY TFPHRSEGDYGAAKVMLR
Sbjct: 184 VGDKQGNVGVGCAKAKEVVAAVQKSAIDARRNIVQVPMTKYSTFPHRSEGDYGAAKVMLR 243

Query: 276 PASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQFRDVAQER 335
           PASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARAT+ AVQ+M+QFRDVAQER
Sbjct: 244 PASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATLAAVQQMRQFRDVAQER 303

Query: 336 GIPMEELWK 341
           GIPMEELWK
Sbjct: 304 GIPMEELWK 303

[Close]

BLAST of Cucsat.G2014 vs. ExPASy Swiss-Prot
Match: Q1XDJ0 (30S ribosomal protein S5, chloroplastic OS=Pyropia yezoensis OX=2788 GN=rps5 PE=3 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 1.6e-47
Identity = 98/167 (58.68%), Postives = 135/167 (80.84%), Query Frame = 0


Query: 174 KAKKDKPRD-GFDERVVQVRRVTKVVKGGKQLHFRAIVVVGDKQGQVGVGVGKAKEVITA 233
           K  K K +D G++ERVVQV+RVTKVVKGGK+L FR I+V+G++QGQVGVGVGKA +VI A
Sbjct: 6   KQSKGKDKDSGWEERVVQVKRVTKVVKGGKKLSFRVILVIGNEQGQVGVGVGKASDVIGA 65

Query: 234 VQKSAVNARRNIVTVPMTKYLTFPHRSEGDYGAAKVMLRPASPGTGVIAGGAVRIVLEMA 293
           V+K   +A++++VTVP+TK  + PH   G  GAAKV+LRP++PG+GVIAGG+VR VLE++
Sbjct: 66  VKKGVTDAKKHLVTVPLTKSNSIPHPINGISGAAKVILRPSAPGSGVIAGGSVRTVLELS 125

Query: 294 GVENALGKQLGSNNALNNARATVVAVQKMKQFRDVAQERGIPMEELW 340
           GV+N L KQLGSNN LNNARA +  + +++ F + A++RG+P+E L+
Sbjct: 126 GVQNILAKQLGSNNTLNNARAVLNGLTQLRTFSEAAKDRGVPIESLY 172

[Close]

BLAST of Cucsat.G2014 vs. ExPASy Swiss-Prot
Match: P51298 (30S ribosomal protein S5, chloroplastic OS=Porphyra purpurea OX=2787 GN=rps5 PE=3 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 4.8e-47
Identity = 98/167 (58.68%), Postives = 135/167 (80.84%), Query Frame = 0


Query: 174 KAKKDKPRD-GFDERVVQVRRVTKVVKGGKQLHFRAIVVVGDKQGQVGVGVGKAKEVITA 233
           K  K K +D G++ERVVQV+RVTKVVKGGK+L FR I+VVG++QGQVGVGVGKA +VI A
Sbjct: 6   KQGKSKEKDNGWEERVVQVKRVTKVVKGGKKLSFRVILVVGNEQGQVGVGVGKASDVIGA 65

Query: 234 VQKSAVNARRNIVTVPMTKYLTFPHRSEGDYGAAKVMLRPASPGTGVIAGGAVRIVLEMA 293
           V+K   +A++++VTVP+TK  + PH   G  GAA+V+LRP++PG+GVIAGG+VR VLE++
Sbjct: 66  VKKGVTDAKKHLVTVPLTKSNSIPHPINGISGAAQVILRPSAPGSGVIAGGSVRTVLELS 125

Query: 294 GVENALGKQLGSNNALNNARATVVAVQKMKQFRDVAQERGIPMEELW 340
           GV+N L KQLGSNN LNNARA +  + +++ F + A++RG+P+E L+
Sbjct: 126 GVQNILAKQLGSNNTLNNARAVLNGLTQLRTFSEAAKDRGVPIENLY 172

[Close]

BLAST of Cucsat.G2014 vs. ExPASy Swiss-Prot
Match: B1WQS7 (30S ribosomal protein S5 OS=Crocosphaera subtropica (strain ATCC 51142 / BH68) OX=43989 GN=rpsE PE=3 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 1.4e-46
Identity = 97/167 (58.08%), Postives = 134/167 (80.24%), Query Frame = 0


Query: 174 KAKKDKPRD-GFDERVVQVRRVTKVVKGGKQLHFRAIVVVGDKQGQVGVGVGKAKEVITA 233
           K+ +DK +D  + ERV+Q+RRV+KVVKGGK+L FRAIVVVG+++GQVGVGVGKA +VI A
Sbjct: 6   KSNRDKSKDSNWQERVIQIRRVSKVVKGGKKLSFRAIVVVGNEKGQVGVGVGKAGDVIGA 65

Query: 234 VQKSAVNARRNIVTVPMTKYLTFPHRSEGDYGAAKVMLRPASPGTGVIAGGAVRIVLEMA 293
           V+K   + ++ ++ V +TK  +  H ++G  G AKV++RPA+PGTGVIAGGAVR VLE+A
Sbjct: 66  VRKGVADGKKQLIDVSLTKSSSITHVAKGVSGGAKVIVRPAAPGTGVIAGGAVRTVLELA 125

Query: 294 GVENALGKQLGSNNALNNARATVVAVQKMKQFRDVAQERGIPMEELW 340
           G++N L KQLGSNN LNNARA + A++ ++ F +VAQERG+P+E L+
Sbjct: 126 GLKNILAKQLGSNNPLNNARAVINALEGLRTFSEVAQERGVPLEHLY 172

[Close]

BLAST of Cucsat.G2014 vs. NCBI nr
Match: XP_004134699.1 (30S ribosomal protein S5, chloroplastic [Cucumis sativus] >XP_011658214.1 30S ribosomal protein S5, chloroplastic [Cucumis sativus] >KAE8647691.1 hypothetical protein Csa_004214 [Cucumis sativus])

HSP 1 Score: 581 bits (1497), Expect = 5.86e-208
Identity = 307/307 (100.00%), Postives = 307/307 (100.00%), Query Frame = 0


Query: 34  MASSTLVPISSISLRSSPSHRLSIPLFKPFPLLHSTVFLLPISSSSSSSILSATRAKSSD 93
           MASSTLVPISSISLRSSPSHRLSIPLFKPFPLLHSTVFLLPISSSSSSSILSATRAKSSD
Sbjct: 1   MASSTLVPISSISLRSSPSHRLSIPLFKPFPLLHSTVFLLPISSSSSSSILSATRAKSSD 60

Query: 94  IDTTFFDNVNPQEDIVYDPPEVPEGFVPPPSFDEGPIETEEEIAAGYEEIYGPAYSGVSV 153
           IDTTFFDNVNPQEDIVYDPPEVPEGFVPPPSFDEGPIETEEEIAAGYEEIYGPAYSGVSV
Sbjct: 61  IDTTFFDNVNPQEDIVYDPPEVPEGFVPPPSFDEGPIETEEEIAAGYEEIYGPAYSGVSV 120

Query: 154 LGNDIYVMDSKVKKAGGFGSKAKKDKPRDGFDERVVQVRRVTKVVKGGKQLHFRAIVVVG 213
           LGNDIYVMDSKVKKAGGFGSKAKKDKPRDGFDERVVQVRRVTKVVKGGKQLHFRAIVVVG
Sbjct: 121 LGNDIYVMDSKVKKAGGFGSKAKKDKPRDGFDERVVQVRRVTKVVKGGKQLHFRAIVVVG 180

Query: 214 DKQGQVGVGVGKAKEVITAVQKSAVNARRNIVTVPMTKYLTFPHRSEGDYGAAKVMLRPA 273
           DKQGQVGVGVGKAKEVITAVQKSAVNARRNIVTVPMTKYLTFPHRSEGDYGAAKVMLRPA
Sbjct: 181 DKQGQVGVGVGKAKEVITAVQKSAVNARRNIVTVPMTKYLTFPHRSEGDYGAAKVMLRPA 240

Query: 274 SPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQFRDVAQERGI 333
           SPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQFRDVAQERGI
Sbjct: 241 SPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQFRDVAQERGI 300

Query: 334 PMEELWK 340
           PMEELWK
Sbjct: 301 PMEELWK 307

[Close]

BLAST of Cucsat.G2014 vs. NCBI nr
Match: KAA0052681.1 (30S ribosomal protein S5 [Cucumis melo var. makuwa] >TYK13143.1 30S ribosomal protein S5 [Cucumis melo var. makuwa])

HSP 1 Score: 559 bits (1441), Expect = 1.99e-199
Identity = 296/307 (96.42%), Postives = 300/307 (97.72%), Query Frame = 0


Query: 34  MASSTLVPISSISLRSSPSHRLSIPLFKPFPLLHSTVFLLPISSSSSSSILSATRAKSSD 93
           MASSTLVPISSISLRSSPSHRLSIPLFKPFPLLHS V +L ISSSSSSSILSATRAKSSD
Sbjct: 1   MASSTLVPISSISLRSSPSHRLSIPLFKPFPLLHSPVSVLSISSSSSSSILSATRAKSSD 60

Query: 94  IDTTFFDNVNPQEDIVYDPPEVPEGFVPPPSFDEGPIETEEEIAAGYEEIYGPAYSGVSV 153
           IDTTFFDNVNP EDI +DPPEVPEGFVPPPSFDEGP+ETEEEIAA YEEIYGPAYSGVSV
Sbjct: 61  IDTTFFDNVNPDEDIAFDPPEVPEGFVPPPSFDEGPMETEEEIAAAYEEIYGPAYSGVSV 120

Query: 154 LGNDIYVMDSKVKKAGGFGSKAKKDKPRDGFDERVVQVRRVTKVVKGGKQLHFRAIVVVG 213
           LGNDIYVMDSKVKKAGGFGSKAKK+KPRDGFDERVVQVRRVTKVVKGGKQLHFRAIVVVG
Sbjct: 121 LGNDIYVMDSKVKKAGGFGSKAKKEKPRDGFDERVVQVRRVTKVVKGGKQLHFRAIVVVG 180

Query: 214 DKQGQVGVGVGKAKEVITAVQKSAVNARRNIVTVPMTKYLTFPHRSEGDYGAAKVMLRPA 273
           DKQGQVGVGVGKAKEVI AVQKSAVNARRNIVTVPMTKYLTFPHRSEGDYGAAKVMLRPA
Sbjct: 181 DKQGQVGVGVGKAKEVIAAVQKSAVNARRNIVTVPMTKYLTFPHRSEGDYGAAKVMLRPA 240

Query: 274 SPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQFRDVAQERGI 333
           SPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQFRDVAQERGI
Sbjct: 241 SPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQFRDVAQERGI 300

Query: 334 PMEELWK 340
           PMEELWK
Sbjct: 301 PMEELWK 307

[Close]

BLAST of Cucsat.G2014 vs. NCBI nr
Match: XP_008439845.1 (PREDICTED: 30S ribosomal protein S5, chloroplastic [Cucumis melo] >XP_008439846.1 PREDICTED: 30S ribosomal protein S5, chloroplastic [Cucumis melo])

HSP 1 Score: 557 bits (1436), Expect = 1.15e-198
Identity = 295/307 (96.09%), Postives = 299/307 (97.39%), Query Frame = 0


Query: 34  MASSTLVPISSISLRSSPSHRLSIPLFKPFPLLHSTVFLLPISSSSSSSILSATRAKSSD 93
           MASSTLVPISSISLRSSPSHRLSIPLFKPFPLLHS V +L ISSSSSSSILSATRAKSSD
Sbjct: 1   MASSTLVPISSISLRSSPSHRLSIPLFKPFPLLHSPVSVLSISSSSSSSILSATRAKSSD 60

Query: 94  IDTTFFDNVNPQEDIVYDPPEVPEGFVPPPSFDEGPIETEEEIAAGYEEIYGPAYSGVSV 153
            DTTFFDNVNP EDI +DPPEVPEGFVPPPSFDEGP+ETEEEIAA YEEIYGPAYSGVSV
Sbjct: 61  TDTTFFDNVNPDEDIAFDPPEVPEGFVPPPSFDEGPMETEEEIAAAYEEIYGPAYSGVSV 120

Query: 154 LGNDIYVMDSKVKKAGGFGSKAKKDKPRDGFDERVVQVRRVTKVVKGGKQLHFRAIVVVG 213
           LGNDIYVMDSKVKKAGGFGSKAKK+KPRDGFDERVVQVRRVTKVVKGGKQLHFRAIVVVG
Sbjct: 121 LGNDIYVMDSKVKKAGGFGSKAKKEKPRDGFDERVVQVRRVTKVVKGGKQLHFRAIVVVG 180

Query: 214 DKQGQVGVGVGKAKEVITAVQKSAVNARRNIVTVPMTKYLTFPHRSEGDYGAAKVMLRPA 273
           DKQGQVGVGVGKAKEVI AVQKSAVNARRNIVTVPMTKYLTFPHRSEGDYGAAKVMLRPA
Sbjct: 181 DKQGQVGVGVGKAKEVIAAVQKSAVNARRNIVTVPMTKYLTFPHRSEGDYGAAKVMLRPA 240

Query: 274 SPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQFRDVAQERGI 333
           SPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQFRDVAQERGI
Sbjct: 241 SPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQFRDVAQERGI 300

Query: 334 PMEELWK 340
           PMEELWK
Sbjct: 301 PMEELWK 307

[Close]

BLAST of Cucsat.G2014 vs. NCBI nr
Match: XP_038883765.1 (30S ribosomal protein S5, chloroplastic [Benincasa hispida])

HSP 1 Score: 544 bits (1402), Expect = 1.74e-193
Identity = 288/307 (93.81%), Postives = 294/307 (95.77%), Query Frame = 0


Query: 34  MASSTLVPISSISLRSSPSHRLSIPLFKPFPLLHSTVFLLPISSSSSSSILSATRAKSSD 93
           MASSTLVPISS+SLRSSPSHRL IPLFKPF +LHS V + PISSSSSS ILSAT  KSSD
Sbjct: 1   MASSTLVPISSLSLRSSPSHRLPIPLFKPFTVLHSAVSVPPISSSSSSFILSATPPKSSD 60

Query: 94  IDTTFFDNVNPQEDIVYDPPEVPEGFVPPPSFDEGPIETEEEIAAGYEEIYGPAYSGVSV 153
           IDTTFFDNV PQED+VYDPPEVPEGFVPPPSFDEGP E+E+EIAA YEEIYGPAYSGVSV
Sbjct: 61  IDTTFFDNVTPQEDVVYDPPEVPEGFVPPPSFDEGPPESEDEIAAAYEEIYGPAYSGVSV 120

Query: 154 LGNDIYVMDSKVKKAGGFGSKAKKDKPRDGFDERVVQVRRVTKVVKGGKQLHFRAIVVVG 213
           LGNDIYVMDSKVKK GGFGSKAKKDKPRDGFDERVVQVRRVTKVVKGGKQLHFRAIVVVG
Sbjct: 121 LGNDIYVMDSKVKKVGGFGSKAKKDKPRDGFDERVVQVRRVTKVVKGGKQLHFRAIVVVG 180

Query: 214 DKQGQVGVGVGKAKEVITAVQKSAVNARRNIVTVPMTKYLTFPHRSEGDYGAAKVMLRPA 273
           DKQGQVGVGVGKAKEVI AVQKSAVNARRNIVTVPMTKYLTFPHRSEGDYGAAKVMLRPA
Sbjct: 181 DKQGQVGVGVGKAKEVIAAVQKSAVNARRNIVTVPMTKYLTFPHRSEGDYGAAKVMLRPA 240

Query: 274 SPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQFRDVAQERGI 333
           SPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQFRDVAQERGI
Sbjct: 241 SPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQFRDVAQERGI 300

Query: 334 PMEELWK 340
           PMEELWK
Sbjct: 301 PMEELWK 307

[Close]

BLAST of Cucsat.G2014 vs. NCBI nr
Match: XP_022142374.1 (30S ribosomal protein S5, chloroplastic [Momordica charantia])

HSP 1 Score: 517 bits (1331), Expect = 1.01e-182
Identity = 275/307 (89.58%), Postives = 288/307 (93.81%), Query Frame = 0


Query: 34  MASSTLVPISSISLRSSPSHRLSIPLFKPFPLLHSTVFLLPISSSSSSSILSATRAKSSD 93
           MASSTLVPISS+SLRSSPSHRL I   KPF +LHS + L PISSSS   IL+  RAKSSD
Sbjct: 1   MASSTLVPISSLSLRSSPSHRLPILPLKPFTVLHSALSLAPISSSS---ILAPIRAKSSD 60

Query: 94  IDTTFFDNVNPQEDIVYDPPEVPEGFVPPPSFDEGPIETEEEIAAGYEEIYGPAYSGVSV 153
           IDTTFFDNV P++D+VYDPPEVPEGFV PPSFDEGP+ETEEEIAA YEEIYGPAYSGVSV
Sbjct: 61  IDTTFFDNVTPEDDVVYDPPEVPEGFVAPPSFDEGPLETEEEIAAAYEEIYGPAYSGVSV 120

Query: 154 LGNDIYVMDSKVKKAGGFGSKAKKDKPRDGFDERVVQVRRVTKVVKGGKQLHFRAIVVVG 213
           LGNDI+VMDSKVKK GGFGSKAKKDK RDGF+ERVVQVRRVTKVVKGGKQLHFRAIVVVG
Sbjct: 121 LGNDIHVMDSKVKKVGGFGSKAKKDKLRDGFEERVVQVRRVTKVVKGGKQLHFRAIVVVG 180

Query: 214 DKQGQVGVGVGKAKEVITAVQKSAVNARRNIVTVPMTKYLTFPHRSEGDYGAAKVMLRPA 273
           DKQGQVGVGVGKAKEVI+AVQKSAVNARRNIVTVPMTKYLTFPHRS+GDYGAAKVMLRPA
Sbjct: 181 DKQGQVGVGVGKAKEVISAVQKSAVNARRNIVTVPMTKYLTFPHRSDGDYGAAKVMLRPA 240

Query: 274 SPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQFRDVAQERGI 333
           SPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATV AVQKMKQFR+VAQERGI
Sbjct: 241 SPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVAAVQKMKQFREVAQERGI 300

Query: 334 PMEELWK 340
           PMEELWK
Sbjct: 301 PMEELWK 304

[Close]

BLAST of Cucsat.G2014 vs. ExPASy TrEMBL
Match: A0A0A0KK69 (S5 DRBM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G517420 PE=3 SV=1)

HSP 1 Score: 652 bits (1682), Expect = 1.01e-235
Identity = 340/340 (100.00%), Postives = 340/340 (100.00%), Query Frame = 0


Query: 1   VSSHMITSSPYPCRVHWDKPPSPNPQTFSIFPSMASSTLVPISSISLRSSPSHRLSIPLF 60
           VSSHMITSSPYPCRVHWDKPPSPNPQTFSIFPSMASSTLVPISSISLRSSPSHRLSIPLF
Sbjct: 14  VSSHMITSSPYPCRVHWDKPPSPNPQTFSIFPSMASSTLVPISSISLRSSPSHRLSIPLF 73

Query: 61  KPFPLLHSTVFLLPISSSSSSSILSATRAKSSDIDTTFFDNVNPQEDIVYDPPEVPEGFV 120
           KPFPLLHSTVFLLPISSSSSSSILSATRAKSSDIDTTFFDNVNPQEDIVYDPPEVPEGFV
Sbjct: 74  KPFPLLHSTVFLLPISSSSSSSILSATRAKSSDIDTTFFDNVNPQEDIVYDPPEVPEGFV 133

Query: 121 PPPSFDEGPIETEEEIAAGYEEIYGPAYSGVSVLGNDIYVMDSKVKKAGGFGSKAKKDKP 180
           PPPSFDEGPIETEEEIAAGYEEIYGPAYSGVSVLGNDIYVMDSKVKKAGGFGSKAKKDKP
Sbjct: 134 PPPSFDEGPIETEEEIAAGYEEIYGPAYSGVSVLGNDIYVMDSKVKKAGGFGSKAKKDKP 193

Query: 181 RDGFDERVVQVRRVTKVVKGGKQLHFRAIVVVGDKQGQVGVGVGKAKEVITAVQKSAVNA 240
           RDGFDERVVQVRRVTKVVKGGKQLHFRAIVVVGDKQGQVGVGVGKAKEVITAVQKSAVNA
Sbjct: 194 RDGFDERVVQVRRVTKVVKGGKQLHFRAIVVVGDKQGQVGVGVGKAKEVITAVQKSAVNA 253

Query: 241 RRNIVTVPMTKYLTFPHRSEGDYGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGK 300
           RRNIVTVPMTKYLTFPHRSEGDYGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGK
Sbjct: 254 RRNIVTVPMTKYLTFPHRSEGDYGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGK 313

Query: 301 QLGSNNALNNARATVVAVQKMKQFRDVAQERGIPMEELWK 340
           QLGSNNALNNARATVVAVQKMKQFRDVAQERGIPMEELWK
Sbjct: 314 QLGSNNALNNARATVVAVQKMKQFRDVAQERGIPMEELWK 353

[Close]

BLAST of Cucsat.G2014 vs. ExPASy TrEMBL
Match: A0A5D3CMJ7 (30S ribosomal protein S5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G007540 PE=3 SV=1)

HSP 1 Score: 559 bits (1441), Expect = 9.66e-200
Identity = 296/307 (96.42%), Postives = 300/307 (97.72%), Query Frame = 0


Query: 34  MASSTLVPISSISLRSSPSHRLSIPLFKPFPLLHSTVFLLPISSSSSSSILSATRAKSSD 93
           MASSTLVPISSISLRSSPSHRLSIPLFKPFPLLHS V +L ISSSSSSSILSATRAKSSD
Sbjct: 1   MASSTLVPISSISLRSSPSHRLSIPLFKPFPLLHSPVSVLSISSSSSSSILSATRAKSSD 60

Query: 94  IDTTFFDNVNPQEDIVYDPPEVPEGFVPPPSFDEGPIETEEEIAAGYEEIYGPAYSGVSV 153
           IDTTFFDNVNP EDI +DPPEVPEGFVPPPSFDEGP+ETEEEIAA YEEIYGPAYSGVSV
Sbjct: 61  IDTTFFDNVNPDEDIAFDPPEVPEGFVPPPSFDEGPMETEEEIAAAYEEIYGPAYSGVSV 120

Query: 154 LGNDIYVMDSKVKKAGGFGSKAKKDKPRDGFDERVVQVRRVTKVVKGGKQLHFRAIVVVG 213
           LGNDIYVMDSKVKKAGGFGSKAKK+KPRDGFDERVVQVRRVTKVVKGGKQLHFRAIVVVG
Sbjct: 121 LGNDIYVMDSKVKKAGGFGSKAKKEKPRDGFDERVVQVRRVTKVVKGGKQLHFRAIVVVG 180

Query: 214 DKQGQVGVGVGKAKEVITAVQKSAVNARRNIVTVPMTKYLTFPHRSEGDYGAAKVMLRPA 273
           DKQGQVGVGVGKAKEVI AVQKSAVNARRNIVTVPMTKYLTFPHRSEGDYGAAKVMLRPA
Sbjct: 181 DKQGQVGVGVGKAKEVIAAVQKSAVNARRNIVTVPMTKYLTFPHRSEGDYGAAKVMLRPA 240

Query: 274 SPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQFRDVAQERGI 333
           SPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQFRDVAQERGI
Sbjct: 241 SPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQFRDVAQERGI 300

Query: 334 PMEELWK 340
           PMEELWK
Sbjct: 301 PMEELWK 307

[Close]

BLAST of Cucsat.G2014 vs. ExPASy TrEMBL
Match: A0A1S3AZA3 (30S ribosomal protein S5, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103484514 PE=3 SV=1)

HSP 1 Score: 557 bits (1436), Expect = 5.58e-199
Identity = 295/307 (96.09%), Postives = 299/307 (97.39%), Query Frame = 0


Query: 34  MASSTLVPISSISLRSSPSHRLSIPLFKPFPLLHSTVFLLPISSSSSSSILSATRAKSSD 93
           MASSTLVPISSISLRSSPSHRLSIPLFKPFPLLHS V +L ISSSSSSSILSATRAKSSD
Sbjct: 1   MASSTLVPISSISLRSSPSHRLSIPLFKPFPLLHSPVSVLSISSSSSSSILSATRAKSSD 60

Query: 94  IDTTFFDNVNPQEDIVYDPPEVPEGFVPPPSFDEGPIETEEEIAAGYEEIYGPAYSGVSV 153
            DTTFFDNVNP EDI +DPPEVPEGFVPPPSFDEGP+ETEEEIAA YEEIYGPAYSGVSV
Sbjct: 61  TDTTFFDNVNPDEDIAFDPPEVPEGFVPPPSFDEGPMETEEEIAAAYEEIYGPAYSGVSV 120

Query: 154 LGNDIYVMDSKVKKAGGFGSKAKKDKPRDGFDERVVQVRRVTKVVKGGKQLHFRAIVVVG 213
           LGNDIYVMDSKVKKAGGFGSKAKK+KPRDGFDERVVQVRRVTKVVKGGKQLHFRAIVVVG
Sbjct: 121 LGNDIYVMDSKVKKAGGFGSKAKKEKPRDGFDERVVQVRRVTKVVKGGKQLHFRAIVVVG 180

Query: 214 DKQGQVGVGVGKAKEVITAVQKSAVNARRNIVTVPMTKYLTFPHRSEGDYGAAKVMLRPA 273
           DKQGQVGVGVGKAKEVI AVQKSAVNARRNIVTVPMTKYLTFPHRSEGDYGAAKVMLRPA
Sbjct: 181 DKQGQVGVGVGKAKEVIAAVQKSAVNARRNIVTVPMTKYLTFPHRSEGDYGAAKVMLRPA 240

Query: 274 SPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQFRDVAQERGI 333
           SPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQFRDVAQERGI
Sbjct: 241 SPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQFRDVAQERGI 300

Query: 334 PMEELWK 340
           PMEELWK
Sbjct: 301 PMEELWK 307

[Close]

BLAST of Cucsat.G2014 vs. ExPASy TrEMBL
Match: A0A6J1CLD7 (30S ribosomal protein S5, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111012511 PE=3 SV=1)

HSP 1 Score: 517 bits (1331), Expect = 4.91e-183
Identity = 275/307 (89.58%), Postives = 288/307 (93.81%), Query Frame = 0


Query: 34  MASSTLVPISSISLRSSPSHRLSIPLFKPFPLLHSTVFLLPISSSSSSSILSATRAKSSD 93
           MASSTLVPISS+SLRSSPSHRL I   KPF +LHS + L PISSSS   IL+  RAKSSD
Sbjct: 1   MASSTLVPISSLSLRSSPSHRLPILPLKPFTVLHSALSLAPISSSS---ILAPIRAKSSD 60

Query: 94  IDTTFFDNVNPQEDIVYDPPEVPEGFVPPPSFDEGPIETEEEIAAGYEEIYGPAYSGVSV 153
           IDTTFFDNV P++D+VYDPPEVPEGFV PPSFDEGP+ETEEEIAA YEEIYGPAYSGVSV
Sbjct: 61  IDTTFFDNVTPEDDVVYDPPEVPEGFVAPPSFDEGPLETEEEIAAAYEEIYGPAYSGVSV 120

Query: 154 LGNDIYVMDSKVKKAGGFGSKAKKDKPRDGFDERVVQVRRVTKVVKGGKQLHFRAIVVVG 213
           LGNDI+VMDSKVKK GGFGSKAKKDK RDGF+ERVVQVRRVTKVVKGGKQLHFRAIVVVG
Sbjct: 121 LGNDIHVMDSKVKKVGGFGSKAKKDKLRDGFEERVVQVRRVTKVVKGGKQLHFRAIVVVG 180

Query: 214 DKQGQVGVGVGKAKEVITAVQKSAVNARRNIVTVPMTKYLTFPHRSEGDYGAAKVMLRPA 273
           DKQGQVGVGVGKAKEVI+AVQKSAVNARRNIVTVPMTKYLTFPHRS+GDYGAAKVMLRPA
Sbjct: 181 DKQGQVGVGVGKAKEVISAVQKSAVNARRNIVTVPMTKYLTFPHRSDGDYGAAKVMLRPA 240

Query: 274 SPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQFRDVAQERGI 333
           SPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATV AVQKMKQFR+VAQERGI
Sbjct: 241 SPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVAAVQKMKQFREVAQERGI 300

Query: 334 PMEELWK 340
           PMEELWK
Sbjct: 301 PMEELWK 304

[Close]

BLAST of Cucsat.G2014 vs. ExPASy TrEMBL
Match: A0A6J1IU44 (30S ribosomal protein S5, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111478601 PE=3 SV=1)

HSP 1 Score: 504 bits (1297), Expect = 7.39e-178
Identity = 266/307 (86.64%), Postives = 286/307 (93.16%), Query Frame = 0


Query: 34  MASSTLVPISSISLRSSPSHRLSIPLFKPFPLLHSTVFLLPISSSSSSSILSATRAKSSD 93
           MASS +VPISS+SLRSSPS+ L IP  KPF +LHS V + PISSS    ILSA RAK SD
Sbjct: 1   MASSIVVPISSLSLRSSPSYCLPIPPLKPFTVLHSAVSVPPISSSL---ILSAARAKPSD 60

Query: 94  IDTTFFDNVNPQEDIVYDPPEVPEGFVPPPSFDEGPIETEEEIAAGYEEIYGPAYSGVSV 153
           IDT FF++VNP+ED+VYDPPEVPEGFV PPSFDEGP+E+E+EIAA YEE+YGPAYSGVSV
Sbjct: 61  IDTIFFESVNPEEDVVYDPPEVPEGFVAPPSFDEGPLESEDEIAAAYEELYGPAYSGVSV 120

Query: 154 LGNDIYVMDSKVKKAGGFGSKAKKDKPRDGFDERVVQVRRVTKVVKGGKQLHFRAIVVVG 213
           LGNDIYVMDSK+KK GGFGSKA+K+K RDGFDERVVQVRRVTKVVKGGKQLHFRAIVVVG
Sbjct: 121 LGNDIYVMDSKMKKVGGFGSKARKEKARDGFDERVVQVRRVTKVVKGGKQLHFRAIVVVG 180

Query: 214 DKQGQVGVGVGKAKEVITAVQKSAVNARRNIVTVPMTKYLTFPHRSEGDYGAAKVMLRPA 273
           DK+GQVGVGVGKAKEVI+AVQKSA+NARRNIVTVPMTKYLTFPHRSEGDYGAAKVMLRPA
Sbjct: 181 DKKGQVGVGVGKAKEVISAVQKSAINARRNIVTVPMTKYLTFPHRSEGDYGAAKVMLRPA 240

Query: 274 SPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQFRDVAQERGI 333
           SPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAV KMKQFRDVA+ERGI
Sbjct: 241 SPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVMKMKQFRDVARERGI 300

Query: 334 PMEELWK 340
           PMEELWK
Sbjct: 301 PMEELWK 304

[Close]

BLAST of Cucsat.G2014 vs. TAIR 10
Match: AT2G33800.1 (Ribosomal protein S5 family protein )

HSP 1 Score: 389.8 bits (1000), Expect = 2.2e-108
Identity = 217/309 (70.23%), Postives = 246/309 (79.61%), Query Frame = 0


Query: 36  SSTLVPISSISLRSSPSHRLSIPLFKPFPLLHSTVFLLPISS--SSSSSILSATRAKSSD 95
           +S L  +SS+SL +  S  +S           ST  ++  SS  +   S L+  +A S+D
Sbjct: 4   ASALSSLSSLSLHTRTSSLIS---------SSSTKSIVSFSSFLNRRFSSLTLVKASSTD 63

Query: 96  IDTTFFDNVNPQ--EDIVYDPPEVPEGFVPPPSFDEGPIETEEEIAAGYEEIYGPAYSGV 155
            +T FF++  P+   ++V+DPP  PEGFV PP FDEG  ETEEEIA  +EE+YGPAYSG 
Sbjct: 64  TETIFFEDETPEITANVVFDPPIAPEGFVSPPYFDEGSDETEEEIATAFEELYGPAYSGE 123

Query: 156 SVLGNDIYVMDSKVKKAGGFGSKAKKDKPRDGFDERVVQVRRVTKVVKGGKQLHFRAIVV 215
           S+LG DIYVMDSK KK+ G G K KKDK RDGF+ERVVQVRRVTKVVKGGKQL FRAIVV
Sbjct: 124 SMLGKDIYVMDSKHKKSSGIGGKPKKDKIRDGFEERVVQVRRVTKVVKGGKQLKFRAIVV 183

Query: 216 VGDKQGQVGVGVGKAKEVITAVQKSAVNARRNIVTVPMTKYLTFPHRSEGDYGAAKVMLR 275
           VGDKQG VGVG  KAKEV+ AVQKSA++ARRNIV VPMTKY TFPHRSEGDYGAAKVMLR
Sbjct: 184 VGDKQGNVGVGCAKAKEVVAAVQKSAIDARRNIVQVPMTKYSTFPHRSEGDYGAAKVMLR 243

Query: 276 PASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQFRDVAQER 335
           PASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARAT+ AVQ+M+QFRDVAQER
Sbjct: 244 PASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATLAAVQQMRQFRDVAQER 303

Query: 336 GIPMEELWK 341
           GIPMEELWK
Sbjct: 304 GIPMEELWK 303

[Close]

BLAST of Cucsat.G2014 vs. TAIR 10
Match: AT1G64880.1 (Ribosomal protein S5 family protein )

HSP 1 Score: 81.6 bits (200), Expect = 1.3e-15
Identity = 52/159 (32.70%), Postives = 88/159 (55.35%), Query Frame = 0


Query: 176 KKDKP--RDGFDERVVQVRRVTKVVKGGKQLHFRAIVVVGDKQGQVGVGVGKAKEVITAV 235
           KK +P  R G+D  V+ V++V KV KGG+   + A++V G+ +G +G    KA+   +A+
Sbjct: 348 KKRQPLYRKGYDVHVIDVKKVCKVTKGGRVERYTALMVCGNYEGIIGYAKAKAETGQSAM 407

Query: 236 QKSAVNARRNIVTVPMTKYLTFPHRSEGDYGAAKVMLRPASPGTGVIAGGAVRIVLEMAG 295
           QK+     +N+  V   +  T  H  +  Y   K+ L PA   TG+ AG  V+ +L +AG
Sbjct: 408 QKAYEKCFQNLHYVERHEEHTIAHAIQTSYKKTKLYLWPAPTTTGMKAGRVVKTILLLAG 467

Query: 296 VENALGKQLGSNNALNNARATVVAVQKMKQFRDVAQERG 333
            +N   K +GS N+ N  +A + A+  ++  +DV ++ G
Sbjct: 468 FKNIKSKVIGSRNSYNTVKAVLKALNAVETPKDVQEKFG 506

[Close]

BLAST of Cucsat.G2014 vs. TAIR 10
Match: AT1G58983.1 (Ribosomal protein S5 family protein )

HSP 1 Score: 72.0 bits (175), Expect = 1.0e-12
Identity = 48/147 (32.65%), Postives = 79/147 (53.74%), Query Frame = 0


Query: 186 ERVVQVRRVTKVVKGGKQLHFRAIVVVGDKQGQVGVGVGKAKEVITAVQKSAVNARRNIV 245
           + V+++  V K  + G++  F+A VVVGD  G VG+GV  +KEV TA++ + + A+ ++V
Sbjct: 97  DEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVV 156

Query: 246 TV-------PMTKYLTFPHRSEGDYGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENAL 305
            V        + K  T P +  G  G+  V + PA  G+G++A    + VL+ AG+++  
Sbjct: 157 PVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVF 216

Query: 306 GKQLGSNNALNN-ARATVVAVQKMKQF 325
               GS   L N  +AT   +QK   F
Sbjct: 217 TSSRGSTKTLGNFVKATFDCLQKTYGF 243

[Close]

BLAST of Cucsat.G2014 vs. TAIR 10
Match: AT1G59359.1 (Ribosomal protein S5 family protein )

HSP 1 Score: 72.0 bits (175), Expect = 1.0e-12
Identity = 48/147 (32.65%), Postives = 79/147 (53.74%), Query Frame = 0


Query: 186 ERVVQVRRVTKVVKGGKQLHFRAIVVVGDKQGQVGVGVGKAKEVITAVQKSAVNARRNIV 245
           + V+++  V K  + G++  F+A VVVGD  G VG+GV  +KEV TA++ + + A+ ++V
Sbjct: 97  DEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVV 156

Query: 246 TV-------PMTKYLTFPHRSEGDYGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENAL 305
            V        + K  T P +  G  G+  V + PA  G+G++A    + VL+ AG+++  
Sbjct: 157 PVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVF 216

Query: 306 GKQLGSNNALNN-ARATVVAVQKMKQF 325
               GS   L N  +AT   +QK   F
Sbjct: 217 TSSRGSTKTLGNFVKATFDCLQKTYGF 243

[Close]

BLAST of Cucsat.G2014 vs. TAIR 10
Match: AT1G58380.1 (Ribosomal protein S5 family protein )

HSP 1 Score: 72.0 bits (175), Expect = 1.0e-12
Identity = 48/147 (32.65%), Postives = 79/147 (53.74%), Query Frame = 0


Query: 186 ERVVQVRRVTKVVKGGKQLHFRAIVVVGDKQGQVGVGVGKAKEVITAVQKSAVNARRNIV 245
           + V+++  V K  + G++  F+A VVVGD  G VG+GV  +KEV TA++ + + A+ ++V
Sbjct: 97  DEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVV 156

Query: 246 TV-------PMTKYLTFPHRSEGDYGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENAL 305
            V        + K  T P +  G  G+  V + PA  G+G++A    + VL+ AG+++  
Sbjct: 157 PVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVF 216

Query: 306 GKQLGSNNALNN-ARATVVAVQKMKQF 325
               GS   L N  +AT   +QK   F
Sbjct: 217 TSSRGSTKTLGNFVKATFDCLQKTYGF 243

The following BLAST results are available for this feature:

BLAST of Cucsat.G2014 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ST69	1.8e-110	70.53	30S ribosomal protein S5, chloroplastic OS=Spinacia oleracea OX=3562 GN=rps5 PE=...	[more]
P93014	3.1e-107	70.23	30S ribosomal protein S5, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=rps5 ...	[more]
Q1XDJ0	1.6e-47	58.68	30S ribosomal protein S5, chloroplastic OS=Pyropia yezoensis OX=2788 GN=rps5 PE=...	[more]
P51298	4.8e-47	58.68	30S ribosomal protein S5, chloroplastic OS=Porphyra purpurea OX=2787 GN=rps5 PE=...	[more]
B1WQS7	1.4e-46	58.08	30S ribosomal protein S5 OS=Crocosphaera subtropica (strain ATCC 51142 / BH68) O...	[more]

BLAST of Cucsat.G2014 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004134699.1	5.86e-208	100.00	30S ribosomal protein S5, chloroplastic [Cucumis sativus] >XP_011658214.1 30S ri...	[more]
KAA0052681.1	1.99e-199	96.42	30S ribosomal protein S5 [Cucumis melo var. makuwa] >TYK13143.1 30S ribosomal pr...	[more]
XP_008439845.1	1.15e-198	96.09	PREDICTED: 30S ribosomal protein S5, chloroplastic [Cucumis melo] >XP_008439846....	[more]
XP_038883765.1	1.74e-193	93.81	30S ribosomal protein S5, chloroplastic [Benincasa hispida]	[more]
XP_022142374.1	1.01e-182	89.58	30S ribosomal protein S5, chloroplastic [Momordica charantia]	[more]

BLAST of Cucsat.G2014 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KK69	1.01e-235	100.00	S5 DRBM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G517420 PE=...	[more]
A0A5D3CMJ7	9.66e-200	96.42	30S ribosomal protein S5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A1S3AZA3	5.58e-199	96.09	30S ribosomal protein S5, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103484514 ...	[more]
A0A6J1CLD7	4.91e-183	89.58	30S ribosomal protein S5, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111...	[more]
A0A6J1IU44	7.39e-178	86.64	30S ribosomal protein S5, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]

BLAST of Cucsat.G2014 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G33800.1	2.2e-108	70.23	Ribosomal protein S5 family protein	[more]
AT1G64880.1	1.3e-15	32.70	Ribosomal protein S5 family protein	[more]
AT1G58983.1	1.0e-12	32.65	Ribosomal protein S5 family protein	[more]
AT1G59359.1	1.0e-12	32.65	Ribosomal protein S5 family protein	[more]
AT1G58380.1	1.0e-12	32.65	Ribosomal protein S5 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005324	Ribosomal protein S5, C-terminal	PFAM	PF03719	Ribosomal_S5_C	coord: 261..331 e-value: 2.6E-25 score: 87.7
IPR013810	Ribosomal protein S5, N-terminal	PFAM	PF00333	Ribosomal_S5	coord: 184..248 e-value: 8.0E-24 score: 83.4
IPR013810	Ribosomal protein S5, N-terminal	PROSITE	PS50881	S5_DSRBD	coord: 184..247 score: 24.929888
IPR014721	Ribosomal protein S5 domain 2-type fold, subgroup	GENE3D	3.30.230.10		coord: 251..339 e-value: 1.8E-27 score: 96.7
None	No IPR available	GENE3D	3.30.160.20		coord: 179..245 e-value: 9.7E-24 score: 85.0
None	No IPR available	PANTHER	PTHR13718:SF94	30S RIBOSOMAL PROTEIN S5, CHLOROPLASTIC	coord: 37..340
None	No IPR available	SUPERFAMILY	54768	dsRNA-binding domain-like	coord: 181..249
IPR005712	Ribosomal protein S5, bacterial-type	TIGRFAM	TIGR01021	TIGR01021	coord: 183..337 e-value: 4.3E-59 score: 196.8
IPR005712	Ribosomal protein S5, bacterial-type	HAMAP	MF_01307_B	Ribosomal_S5_B	coord: 161..337 score: 32.345222
IPR000851	Ribosomal protein S5	PANTHER	PTHR13718	RIBOSOMAL S SUBUNIT	coord: 37..340
IPR018192	Ribosomal protein S5, N-terminal, conserved site	PROSITE	PS00585	RIBOSOMAL_S5	coord: 201..233
IPR020568	Ribosomal protein S5 domain 2-type fold	SUPERFAMILY	54211	Ribosomal protein S5 domain 2-like	coord: 254..332

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsat.G2014.T2	Cucsat.G2014.T2	mRNA
Cucsat.G2014.T3	Cucsat.G2014.T3	mRNA
Cucsat.G2014.T1	Cucsat.G2014.T1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005763	mitochondrial small ribosomal subunit
cellular_component	GO:0005840	ribosome
cellular_component	GO:0015935	small ribosomal subunit
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0003723	RNA binding