Cucsat.G19890 (gene) Cucumber (B10) v3

Overview


Name	Cucsat.G19890
Type	gene
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	F-box domain LysM domain containing protein
Location	ctg4: 2763498 .. 2766092 (+)
RNA-Seq Expression	Cucsat.G19890
Synteny	Cucsat.G19890

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CCTAACTTAATAAATATTTCCAATCCCACCCTTTATCAATCTACAAAAAACACAACCATTCATTTCTTTTCTCTCTCTCTCTAAAATGGGATGCTGTTGCGATCAAGACGACGACGTTGAGATCCTCAGACACCTCAATCCCTCCCCGGCCCTTCACTCTCCACCGCCGCAACCTCCACCCGCGGATCATTCCGCTGCCATATTGTCTCCCATGAACTCTCACTTTTTCGCCCTCTCCTGCCGCGATATCCTCCGCCTCATCTTCGAGAACCTTTCCATCCCCGACTTGGCTCGTTCCAGCTGCGTTTGCCGTCTATGGCACTCCGTTGCTTCCGATCAGGAAATTGTCTCCGGAGCTTTCAAAGCGCCGTGGAAGGTGAAGGATGTGGTCGGGAAGCCGAGCTCCTGGAGCTTCTGGAGAGATAATTGCCTTGGGAAGTTTGCAATTTCTCATCGAATTCTCCGCGGCGATAGCTTGGCTAGTCTAGCCGTTAAGTATTCTGTTCAGGTATGGGCTTCGAATATTATTATTGTCTTATTTGAGAAAGTGACTGGAAATTAGGGTAAGAAACAGTAGTAGAATTTCTGAGAATCAATTCAATTTTAAGAAGTCGGAATCATCTATTTTCCTTGTTTTCTCTGAAAAACACGACGGTGCGACAGATTTATGGCTGTTCAAATTTTATAACTTCTCTTGCTGAATTTTTGTTTTATGTTGGATATGGAAACATATGAATTGAAAGTAAGGGAGCTAGAGTACAGAGAACACTTTGAACTTTCAGTACTCCTGTTGTAGCTATATGGTTTATTGCAGCAATGTAGCTTATAGATACTTGATTTCTTTAACATTGATCTTGAAGGCACTGCTGCTTTGAAGTCCTAACATTAATTGAAATTTGTTAACCTTTGAAAAAATCTGTACTTCATACTCTGTTGTTTGTGTTCCCAACTCTTGAGTTCTTGTAAAGTTCAATTAAGGACATTCATGTTCCACTGTTGAGATGAACCCTTTCTTGTGGCTATAAACTTTGATACATTATTGAAATCACCAGCAGTTTGAATCACAGTGGAAACTAATGTATATATATAATGAAATAAACTACTTTCGTTGAGGGGAAAAAATGAAAGAACTAAAAGAATCGAAGCCCAGGAACCTCTCCAAATAAAACGAACCAATCAAGAAAAATAATGCCTCTAGAATAGTTAAGAAAGAGCTTCGATGACGAACCCCAAAGAATGAATCTTAGAGCTCAAAAGTCACATCACTAGGTTTCCTTGCCATCTCTCTGAACACTTTGTTCATTTTCTCCCTAAAATATCAATTAGGAAGGATCAAGTATAAATGTTGAAATCAGCTCTTTCTGGTGGCCATGGACTTGGGTGTGTTGTTGAAATCATCATAGTTTTAACAATAGTTGAAACTTGTATATCTTTCACAACATTAACTTGCCGCAAAAATGAAGAGTTAAATAGTTTTTTTCCCACTCCCAAGCACTTGTAATAAATCAATTAGGAAGGGTCAAGTTCAATTTGAGGTCATTCCCTTTTTTTTTTATGACTATGGACTTTGGTGTATTAATCTTGTTTACATATCTTGTTCGTGTAGGTTATATACATACAATGTCTAAATAACATGACGTAGTACTGTTGCATTCTTGAGATGAATGCTTTTTGATGGTTATGGACGTTGGTGTATTAATTTTGTGTGTTTATATATACATCTTTCTTGTAGGTTACAGACATAAAACGTCTGAACAACATGATGAGTGACCATGGCATATACTCAAGAGAAAGATTGTTAATCCCCATTGGCAATCCCAATATGCTCATTAACAGTATATGTTACATCGAGATGGATGCTATTGCAAAACGAGAAGTTGCAGTGTTATATTTGGACGGAATCCCCATGACCCAACATTTGTATGGTAAGGTGACATCCGAACAAGGTATGTCTTCTGTTCAAGTGAACAAGCGGGTACTTCATTCATTGAGTCGAAGCATGATGGTTGACGACAAGACCGCTCAATATTACTTATCCATTTCCAATGGCAATCCTCGAGCTGCTCTTACAGAATTTGCCGAGGACATCAGGTGGGAGAGGCATATGAGCATTGCCTAATTCTCACAAAGGCAGATTGTTGCTTCGGGTAAAGATAGTGTGTAAATTATTCAGATGCTTTCTACTGGAATCTGTTGTTATTCCTCTCCATATCCACAAAGAATGATTAGATCAAGAATCCGTATCCAACACCAATTCACTCCTTGGCTCATTGGCTGATTGGTATGTACATCTACATCTACATTCTTACTGTCATTTGAATGAGGCATTTTGCCTCGTTTCATTATTGTGTATATATATATATGATATGATGTATTCTCATATTTACTTGAAGATGATGATGCTCTATTGTGTTTAGCTGTAAATCTAATGTTCTTGGAAGTTAAAAACATGTCTATTTAAGCAAAAAACATTGTAAACAAACTTCTTTTCCCCTAGAATTTAATGTCCATAAAGATTGAATTAGAGGTGTAGTGAGTCTGTTTGTGTTACTTTTTGTTTGCTATCAAGATTTAGTCTTTGAATTTCACTGACCT

Coding sequence (CDS)

ATGGGATGCTGTTGCGATCAAGACGACGACGTTGAGATCCTCAGACACCTCAATCCCTCCCCGGCCCTTCACTCTCCACCGCCGCAACCTCCACCCGCGGATCATTCCGCTGCCATATTGTCTCCCATGAACTCTCACTTTTTCGCCCTCTCCTGCCGCGATATCCTCCGCCTCATCTTCGAGAACCTTTCCATCCCCGACTTGGCTCGTTCCAGCTGCGTTTGCCGTCTATGGCACTCCGTTGCTTCCGATCAGGAAATTGTCTCCGGAGCTTTCAAAGCGCCGTGGAAGGTGAAGGATGTGGTCGGGAAGCCGAGCTCCTGGAGCTTCTGGAGAGATAATTGCCTTGGGAAGTTTGCAATTTCTCATCGAATTCTCCGCGGCGATAGCTTGGCTAGTCTAGCCGTTAAGTATTCTGTTCAGGTTACAGACATAAAACGTCTGAACAACATGATGAGTGACCATGGCATATACTCAAGAGAAAGATTGTTAATCCCCATTGGCAATCCCAATATGCTCATTAACAGTATATGTTACATCGAGATGGATGCTATTGCAAAACGAGAAGTTGCAGTGTTATATTTGGACGGAATCCCCATGACCCAACATTTGTATGGTAAGGTGACATCCGAACAAGGTATGTCTTCTGTTCAAGTGAACAAGCGGGTACTTCATTCATTGAGTCGAAGCATGATGGTTGACGACAAGACCGCTCAATATTACTTATCCATTTCCAATGGCAATCCTCGAGCTGCTCTTACAGAATTTGCCGAGGACATCAGGTGGGAGAGGCATATGAGCATTGCCTAA

Protein sequence

MGCCCDQDDDVEILRHLNPSPALHSPPPQPPPADHSAAILSPMNSHFFALSCRDILRLIFENLSIPDLARSSCVCRLWHSVASDQEIVSGAFKAPWKVKDVVGKPSSWSFWRDNCLGKFAISHRILRGDSLASLAVKYSVQVTDIKRLNNMMSDHGIYSRERLLIPIGNPNMLINSICYIEMDAIAKREVAVLYLDGIPMTQHLYGKVTSEQGMSSVQVNKRVLHSLSRSMMVDDKTAQYYLSISNGNPRAALTEFAEDIRWERHMSIA

Homology

[Close]

BLAST of Cucsat.G19890 vs. ExPASy Swiss-Prot
Match: Q9FZ32 (F-box protein At1g55000 OS=Arabidopsis thaliana OX=3702 GN=At1g55000 PE=1 SV=1)

HSP 1 Score: 278.5 bits (711), Expect = 8.1e-74
Identity = 132/220 (60.00%), Postives = 173/220 (78.64%), Query Frame = 0


Query: 49  ALSCRDILRLIFENLSIPDLARSSCVCRLWHSVASDQEIVSGAFKAPWKVKDVVGKPSSW 108
           AL CRD L +IF+ L++ DLAR+SCVC++W+SVA++ ++V  AF APW++K++VG+P+S 
Sbjct: 2   ALYCRDTLIIIFQKLTVADLARASCVCKVWNSVATEDDLVVSAFTAPWRIKELVGRPASV 61

Query: 109 SFWRDNCLGKFAISHRILRGDSLASLAVKYSVQVTDIKRLNNMMSDHGIYSRERLLIPIG 168
           SFWRDN + KFAISHRI RGDS+ SLAVKY+VQV DIKRLNNMMSDHGIYSR+RLLIPI 
Sbjct: 62  SFWRDNGIWKFAISHRICRGDSVTSLAVKYAVQVMDIKRLNNMMSDHGIYSRDRLLIPIS 121

Query: 169 NPNMLINSICYIEMDAIAKREVAVLYLDGIPMTQHLYGKVTSEQGMSSVQVNKRVLHSLS 228
           NP +L N+ CY+E+D  AKREVAVLYL+G P  +      T++Q   S    +R++ SL 
Sbjct: 122 NPEILANTTCYVELDKYAKREVAVLYLEGAPKREQPV-PGTNQQSNLSADGKRRLIESLR 181

Query: 229 RSMMVDDKTAQYYLSISNGNPRAALTEFAEDIRWERHMSI 269
           RSM VDD TA YYL+I+ G+PR+AL+EF+ D+RWER   +
Sbjct: 182 RSMQVDDGTALYYLAIAEGDPRSALSEFSADLRWERQAGL 220

[Close]

BLAST of Cucsat.G19890 vs. ExPASy Swiss-Prot
Match: Q6DEF4 (LysM and putative peptidoglycan-binding domain-containing protein 2 OS=Danio rerio OX=7955 GN=lysmd2 PE=2 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 6.7e-04
Identity = 21/52 (40.38%), Postives = 33/52 (63.46%), Query Frame = 0


Query: 116 LGKFAISHRILRGDSLASLAVKYSVQVTDIKRLNNMMSDHGIYSRERLLIPI 168
           LG+  I HR+  G++L  +A+KY V +  IKR+N + S+  I+ R  L IP+
Sbjct: 60  LGEKYIEHRVTDGETLQGIALKYGVTMEQIKRVNKLFSNDCIFLRNTLSIPV 111

[Close]

BLAST of Cucsat.G19890 vs. ExPASy Swiss-Prot
Match: Q7Z3D4 (LysM and putative peptidoglycan-binding domain-containing protein 3 OS=Homo sapiens OX=9606 GN=LYSMD3 PE=1 SV=2)

HSP 1 Score: 46.2 bits (108), Expect = 6.7e-04
Identity = 21/67 (31.34%), Postives = 38/67 (56.72%), Query Frame = 0


Query: 112 RDNCLGKFAISHRILRGDSLASLAVKYSVQVTDIKRLNNMMSDHGIYSRERLLIPIGNPN 171
           RD       ++  I  GD+L ++A++Y   V DIKR+NN++SD   ++   + IP+   +
Sbjct: 56  RDRLDDIIVLTKDIQEGDTLNAIALQYCCTVADIKRVNNLISDQDFFALRSIKIPVKKFS 115

Query: 172 MLINSIC 179
            L  ++C
Sbjct: 116 SLTETLC 122

[Close]

BLAST of Cucsat.G19890 vs. NCBI nr
Match: XP_004139174.1 (F-box protein At1g55000 [Cucumis sativus] >KGN60915.1 hypothetical protein Csa_023439 [Cucumis sativus])

HSP 1 Score: 547 bits (1409), Expect = 2.13e-196
Identity = 268/269 (99.63%), Postives = 269/269 (100.00%), Query Frame = 0


Query: 1   MGCCCDQDDDVEILRHLNPSPALHSPPPQPPPADHSAAILSPMNSHFFALSCRDILRLIF 60
           MGCCCDQDDDVEILRHLNPSPALHSPPPQPPPADHSAAILSPMNSHFFALSCRDILRLIF
Sbjct: 1   MGCCCDQDDDVEILRHLNPSPALHSPPPQPPPADHSAAILSPMNSHFFALSCRDILRLIF 60

Query: 61  ENLSIPDLARSSCVCRLWHSVASDQEIVSGAFKAPWKVKDVVGKPSSWSFWRDNCLGKFA 120
           ENLSIPDLARSSCVCRLWHSVASDQEIVSGAFKAPWKVKDVVGKPSSWSFWRDNCLGKFA
Sbjct: 61  ENLSIPDLARSSCVCRLWHSVASDQEIVSGAFKAPWKVKDVVGKPSSWSFWRDNCLGKFA 120

Query: 121 ISHRILRGDSLASLAVKYSVQVTDIKRLNNMMSDHGIYSRERLLIPIGNPNMLINSICYI 180
           ISHRILRGDSLASLAVKYSVQVTDIKRLNNMMSDHGIYSRERLLIPIGNPNMLINSICYI
Sbjct: 121 ISHRILRGDSLASLAVKYSVQVTDIKRLNNMMSDHGIYSRERLLIPIGNPNMLINSICYI 180

Query: 181 EMDAIAKREVAVLYLDGIPMTQHLYGKVTSEQGMSSVQVNKRVLHSLSRSMMVDDKTAQY 240
           EMDAIAKREVAVLYLDGIPMTQHLYGKVTSEQGMSSVQVNKRVLHSLSRSMMVDD+TAQY
Sbjct: 181 EMDAIAKREVAVLYLDGIPMTQHLYGKVTSEQGMSSVQVNKRVLHSLSRSMMVDDETAQY 240

Query: 241 YLSISNGNPRAALTEFAEDIRWERHMSIA 269
           YLSISNGNPRAALTEFAEDIRWERHMSIA
Sbjct: 241 YLSISNGNPRAALTEFAEDIRWERHMSIA 269

[Close]

BLAST of Cucsat.G19890 vs. NCBI nr
Match: XP_038877035.1 (F-box protein At1g55000 [Benincasa hispida])

HSP 1 Score: 504 bits (1299), Expect = 1.26e-179
Identity = 247/269 (91.82%), Postives = 257/269 (95.54%), Query Frame = 0


Query: 1   MGCCCDQDDDVEILRHLNPSPALHSPPPQPPPADHSAAILSPMNSHFFALSCRDILRLIF 60
           MGCCCDQDDDVEILRHLNPSP + S PP+PPP D SA +LSPMNSHF ALSCRDILRLIF
Sbjct: 1   MGCCCDQDDDVEILRHLNPSPPVQSLPPEPPPEDSSAVVLSPMNSHFLALSCRDILRLIF 60

Query: 61  ENLSIPDLARSSCVCRLWHSVASDQEIVSGAFKAPWKVKDVVGKPSSWSFWRDNCLGKFA 120
           ENLSIPDLARSSCV RLWHSVASDQEIVSGAFKAPWKVKDVVGKPSSWSFWRDNCLGKFA
Sbjct: 61  ENLSIPDLARSSCVSRLWHSVASDQEIVSGAFKAPWKVKDVVGKPSSWSFWRDNCLGKFA 120

Query: 121 ISHRILRGDSLASLAVKYSVQVTDIKRLNNMMSDHGIYSRERLLIPIGNPNMLINSICYI 180
           ISHRILRGDSLASLAVKYSVQVTDIKRLNNM+SDHGIYSRERLLIPIGNPN+LINSICYI
Sbjct: 121 ISHRILRGDSLASLAVKYSVQVTDIKRLNNMISDHGIYSRERLLIPIGNPNILINSICYI 180

Query: 181 EMDAIAKREVAVLYLDGIPMTQHLYGKVTSEQGMSSVQVNKRVLHSLSRSMMVDDKTAQY 240
           EMDAIAKREVAVLYLDGIP+T HLYGK T E+GMSSVQVNKRVLH LSRSMMVDD+TAQY
Sbjct: 181 EMDAIAKREVAVLYLDGIPITHHLYGKETCERGMSSVQVNKRVLHLLSRSMMVDDETAQY 240

Query: 241 YLSISNGNPRAALTEFAEDIRWERHMSIA 269
           YLSISNG+PRAALTEFAEDIRWERH+SIA
Sbjct: 241 YLSISNGDPRAALTEFAEDIRWERHLSIA 269

[Close]

BLAST of Cucsat.G19890 vs. NCBI nr
Match: XP_022150720.1 (F-box protein At1g55000 [Momordica charantia])

HSP 1 Score: 491 bits (1265), Expect = 1.91e-174
Identity = 242/269 (89.96%), Postives = 254/269 (94.42%), Query Frame = 0


Query: 1   MGCCCDQDDDVEILRHLNPSPALHSPPPQPPPADHSAAILSPMNSHFFALSCRDILRLIF 60
           MGCCCDQDDDVEILRHLNP+ A+HSP   PP AD S A+LSPMNSHFFALSCRDILRLIF
Sbjct: 1   MGCCCDQDDDVEILRHLNPAIAVHSPATLPPEADSSTAVLSPMNSHFFALSCRDILRLIF 60

Query: 61  ENLSIPDLARSSCVCRLWHSVASDQEIVSGAFKAPWKVKDVVGKPSSWSFWRDNCLGKFA 120
           E LSIPDLARSSCVCRLW SVASD EIV+GAFKAPWK+KDV+GKPSS SFWRDNCLGKFA
Sbjct: 61  EKLSIPDLARSSCVCRLWQSVASDHEIVAGAFKAPWKLKDVIGKPSSGSFWRDNCLGKFA 120

Query: 121 ISHRILRGDSLASLAVKYSVQVTDIKRLNNMMSDHGIYSRERLLIPIGNPNMLINSICYI 180
           ISHRILRGDSLASLAVKYSVQV DIKRLNNMMSDHGIYSRERLLIPIGNPN+LINSICYI
Sbjct: 121 ISHRILRGDSLASLAVKYSVQVMDIKRLNNMMSDHGIYSRERLLIPIGNPNILINSICYI 180

Query: 181 EMDAIAKREVAVLYLDGIPMTQHLYGKVTSEQGMSSVQVNKRVLHSLSRSMMVDDKTAQY 240
           EMDAIAKREVAVLYLDGIP T HLYGKVT EQGMSSVQVNK+VLHSLSRSMMVDD+TA+Y
Sbjct: 181 EMDAIAKREVAVLYLDGIPTTHHLYGKVTCEQGMSSVQVNKQVLHSLSRSMMVDDETARY 240

Query: 241 YLSISNGNPRAALTEFAEDIRWERHMSIA 269
           YLSIS+G+PRAALTEFAEDIRWERHMSIA
Sbjct: 241 YLSISHGDPRAALTEFAEDIRWERHMSIA 269

[Close]

BLAST of Cucsat.G19890 vs. NCBI nr
Match: XP_022937590.1 (F-box protein At1g55000 [Cucurbita moschata])

HSP 1 Score: 479 bits (1234), Expect = 1.05e-169
Identity = 238/270 (88.15%), Postives = 251/270 (92.96%), Query Frame = 0


Query: 1   MGCCCDQDDDVEILRHLNPSPALHSPPPQPPPA-DHSAAILSPMNSHFFALSCRDILRLI 60
           MGCCCD+DDDVEILRHL+PSP + SPP Q P   D S A+LSPMNSHFFALSCRDILRLI
Sbjct: 1   MGCCCDEDDDVEILRHLHPSPTVQSPPQQQPTLPDSSTAVLSPMNSHFFALSCRDILRLI 60

Query: 61  FENLSIPDLARSSCVCRLWHSVASDQEIVSGAFKAPWKVKDVVGKPSSWSFWRDNCLGKF 120
           FE LSIPDLARSSCV RLW+SVASDQEIVSGAFKAPWKVKDV+GKPSS SFWRDNCLGKF
Sbjct: 61  FEKLSIPDLARSSCVSRLWNSVASDQEIVSGAFKAPWKVKDVIGKPSSGSFWRDNCLGKF 120

Query: 121 AISHRILRGDSLASLAVKYSVQVTDIKRLNNMMSDHGIYSRERLLIPIGNPNMLINSICY 180
           AISHRILRGDSLASLAVKYSVQV DIKRLNNMMSDHGIYSRERLLIPIGNPN+LINSICY
Sbjct: 121 AISHRILRGDSLASLAVKYSVQVIDIKRLNNMMSDHGIYSRERLLIPIGNPNILINSICY 180

Query: 181 IEMDAIAKREVAVLYLDGIPMTQHLYGKVTSEQGMSSVQVNKRVLHSLSRSMMVDDKTAQ 240
           IEMDAIAKREVA LYLDGIP T HLYGK T++QGMSSVQV KRVLHSLSRSMMVDD+TAQ
Sbjct: 181 IEMDAIAKREVATLYLDGIPTTHHLYGKETNDQGMSSVQVKKRVLHSLSRSMMVDDETAQ 240

Query: 241 YYLSISNGNPRAALTEFAEDIRWERHMSIA 269
           YYLSIS+G+PRAALTEFAEDIRWERHM +A
Sbjct: 241 YYLSISDGDPRAALTEFAEDIRWERHMGMA 270

[Close]

BLAST of Cucsat.G19890 vs. NCBI nr
Match: KAG6586259.1 (F-box protein, partial [Cucurbita argyrosperma subsp. sororia] >KAG7021103.1 F-box protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 478 bits (1231), Expect = 3.01e-169
Identity = 237/270 (87.78%), Postives = 251/270 (92.96%), Query Frame = 0


Query: 1   MGCCCDQDDDVEILRHLNPSPALHSPPPQPPPA-DHSAAILSPMNSHFFALSCRDILRLI 60
           MGCCCD+DDDVEILRHL+PSP + SPP Q P   D S A+LSPMNSHFFALSCRDILRLI
Sbjct: 1   MGCCCDEDDDVEILRHLHPSPTVQSPPQQQPTLPDSSTAVLSPMNSHFFALSCRDILRLI 60

Query: 61  FENLSIPDLARSSCVCRLWHSVASDQEIVSGAFKAPWKVKDVVGKPSSWSFWRDNCLGKF 120
           FE LSIPDLARSSCV RLW+SVASDQEIVSGAFKAPWKVKDV+GKPSS SFWRDNCLGKF
Sbjct: 61  FEKLSIPDLARSSCVSRLWNSVASDQEIVSGAFKAPWKVKDVIGKPSSGSFWRDNCLGKF 120

Query: 121 AISHRILRGDSLASLAVKYSVQVTDIKRLNNMMSDHGIYSRERLLIPIGNPNMLINSICY 180
           AISHRILRGDSLASLAVKYSVQV DIKRLNNMMSDHGIYSRERLLIPIGNPN+LINSICY
Sbjct: 121 AISHRILRGDSLASLAVKYSVQVIDIKRLNNMMSDHGIYSRERLLIPIGNPNILINSICY 180

Query: 181 IEMDAIAKREVAVLYLDGIPMTQHLYGKVTSEQGMSSVQVNKRVLHSLSRSMMVDDKTAQ 240
           IEMDAIAKREVA LYLDGIP T HLYG+ T++QGMSSVQV KRVLHSLSRSMMVDD+TAQ
Sbjct: 181 IEMDAIAKREVATLYLDGIPTTHHLYGRETNDQGMSSVQVKKRVLHSLSRSMMVDDETAQ 240

Query: 241 YYLSISNGNPRAALTEFAEDIRWERHMSIA 269
           YYLSIS+G+PRAALTEFAEDIRWERHM +A
Sbjct: 241 YYLSISDGDPRAALTEFAEDIRWERHMGMA 270

[Close]

BLAST of Cucsat.G19890 vs. ExPASy TrEMBL
Match: A0A0A0LFS6 (LysM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G022840 PE=4 SV=1)

HSP 1 Score: 547 bits (1409), Expect = 1.03e-196
Identity = 268/269 (99.63%), Postives = 269/269 (100.00%), Query Frame = 0


Query: 1   MGCCCDQDDDVEILRHLNPSPALHSPPPQPPPADHSAAILSPMNSHFFALSCRDILRLIF 60
           MGCCCDQDDDVEILRHLNPSPALHSPPPQPPPADHSAAILSPMNSHFFALSCRDILRLIF
Sbjct: 1   MGCCCDQDDDVEILRHLNPSPALHSPPPQPPPADHSAAILSPMNSHFFALSCRDILRLIF 60

Query: 61  ENLSIPDLARSSCVCRLWHSVASDQEIVSGAFKAPWKVKDVVGKPSSWSFWRDNCLGKFA 120
           ENLSIPDLARSSCVCRLWHSVASDQEIVSGAFKAPWKVKDVVGKPSSWSFWRDNCLGKFA
Sbjct: 61  ENLSIPDLARSSCVCRLWHSVASDQEIVSGAFKAPWKVKDVVGKPSSWSFWRDNCLGKFA 120

Query: 121 ISHRILRGDSLASLAVKYSVQVTDIKRLNNMMSDHGIYSRERLLIPIGNPNMLINSICYI 180
           ISHRILRGDSLASLAVKYSVQVTDIKRLNNMMSDHGIYSRERLLIPIGNPNMLINSICYI
Sbjct: 121 ISHRILRGDSLASLAVKYSVQVTDIKRLNNMMSDHGIYSRERLLIPIGNPNMLINSICYI 180

Query: 181 EMDAIAKREVAVLYLDGIPMTQHLYGKVTSEQGMSSVQVNKRVLHSLSRSMMVDDKTAQY 240
           EMDAIAKREVAVLYLDGIPMTQHLYGKVTSEQGMSSVQVNKRVLHSLSRSMMVDD+TAQY
Sbjct: 181 EMDAIAKREVAVLYLDGIPMTQHLYGKVTSEQGMSSVQVNKRVLHSLSRSMMVDDETAQY 240

Query: 241 YLSISNGNPRAALTEFAEDIRWERHMSIA 269
           YLSISNGNPRAALTEFAEDIRWERHMSIA
Sbjct: 241 YLSISNGNPRAALTEFAEDIRWERHMSIA 269

[Close]

BLAST of Cucsat.G19890 vs. ExPASy TrEMBL
Match: A0A6J1D9A3 (F-box protein At1g55000 OS=Momordica charantia OX=3673 GN=LOC111018786 PE=4 SV=1)

HSP 1 Score: 491 bits (1265), Expect = 9.24e-175
Identity = 242/269 (89.96%), Postives = 254/269 (94.42%), Query Frame = 0


Query: 1   MGCCCDQDDDVEILRHLNPSPALHSPPPQPPPADHSAAILSPMNSHFFALSCRDILRLIF 60
           MGCCCDQDDDVEILRHLNP+ A+HSP   PP AD S A+LSPMNSHFFALSCRDILRLIF
Sbjct: 1   MGCCCDQDDDVEILRHLNPAIAVHSPATLPPEADSSTAVLSPMNSHFFALSCRDILRLIF 60

Query: 61  ENLSIPDLARSSCVCRLWHSVASDQEIVSGAFKAPWKVKDVVGKPSSWSFWRDNCLGKFA 120
           E LSIPDLARSSCVCRLW SVASD EIV+GAFKAPWK+KDV+GKPSS SFWRDNCLGKFA
Sbjct: 61  EKLSIPDLARSSCVCRLWQSVASDHEIVAGAFKAPWKLKDVIGKPSSGSFWRDNCLGKFA 120

Query: 121 ISHRILRGDSLASLAVKYSVQVTDIKRLNNMMSDHGIYSRERLLIPIGNPNMLINSICYI 180
           ISHRILRGDSLASLAVKYSVQV DIKRLNNMMSDHGIYSRERLLIPIGNPN+LINSICYI
Sbjct: 121 ISHRILRGDSLASLAVKYSVQVMDIKRLNNMMSDHGIYSRERLLIPIGNPNILINSICYI 180

Query: 181 EMDAIAKREVAVLYLDGIPMTQHLYGKVTSEQGMSSVQVNKRVLHSLSRSMMVDDKTAQY 240
           EMDAIAKREVAVLYLDGIP T HLYGKVT EQGMSSVQVNK+VLHSLSRSMMVDD+TA+Y
Sbjct: 181 EMDAIAKREVAVLYLDGIPTTHHLYGKVTCEQGMSSVQVNKQVLHSLSRSMMVDDETARY 240

Query: 241 YLSISNGNPRAALTEFAEDIRWERHMSIA 269
           YLSIS+G+PRAALTEFAEDIRWERHMSIA
Sbjct: 241 YLSISHGDPRAALTEFAEDIRWERHMSIA 269

[Close]

BLAST of Cucsat.G19890 vs. ExPASy TrEMBL
Match: A0A6J1FH66 (F-box protein At1g55000 OS=Cucurbita moschata OX=3662 GN=LOC111443952 PE=4 SV=1)

HSP 1 Score: 479 bits (1234), Expect = 5.08e-170
Identity = 238/270 (88.15%), Postives = 251/270 (92.96%), Query Frame = 0


Query: 1   MGCCCDQDDDVEILRHLNPSPALHSPPPQPPPA-DHSAAILSPMNSHFFALSCRDILRLI 60
           MGCCCD+DDDVEILRHL+PSP + SPP Q P   D S A+LSPMNSHFFALSCRDILRLI
Sbjct: 1   MGCCCDEDDDVEILRHLHPSPTVQSPPQQQPTLPDSSTAVLSPMNSHFFALSCRDILRLI 60

Query: 61  FENLSIPDLARSSCVCRLWHSVASDQEIVSGAFKAPWKVKDVVGKPSSWSFWRDNCLGKF 120
           FE LSIPDLARSSCV RLW+SVASDQEIVSGAFKAPWKVKDV+GKPSS SFWRDNCLGKF
Sbjct: 61  FEKLSIPDLARSSCVSRLWNSVASDQEIVSGAFKAPWKVKDVIGKPSSGSFWRDNCLGKF 120

Query: 121 AISHRILRGDSLASLAVKYSVQVTDIKRLNNMMSDHGIYSRERLLIPIGNPNMLINSICY 180
           AISHRILRGDSLASLAVKYSVQV DIKRLNNMMSDHGIYSRERLLIPIGNPN+LINSICY
Sbjct: 121 AISHRILRGDSLASLAVKYSVQVIDIKRLNNMMSDHGIYSRERLLIPIGNPNILINSICY 180

Query: 181 IEMDAIAKREVAVLYLDGIPMTQHLYGKVTSEQGMSSVQVNKRVLHSLSRSMMVDDKTAQ 240
           IEMDAIAKREVA LYLDGIP T HLYGK T++QGMSSVQV KRVLHSLSRSMMVDD+TAQ
Sbjct: 181 IEMDAIAKREVATLYLDGIPTTHHLYGKETNDQGMSSVQVKKRVLHSLSRSMMVDDETAQ 240

Query: 241 YYLSISNGNPRAALTEFAEDIRWERHMSIA 269
           YYLSIS+G+PRAALTEFAEDIRWERHM +A
Sbjct: 241 YYLSISDGDPRAALTEFAEDIRWERHMGMA 270

[Close]

BLAST of Cucsat.G19890 vs. ExPASy TrEMBL
Match: A0A6J1HS58 (F-box protein At1g55000 OS=Cucurbita maxima OX=3661 GN=LOC111465634 PE=4 SV=1)

HSP 1 Score: 476 bits (1224), Expect = 1.70e-168
Identity = 236/270 (87.41%), Postives = 250/270 (92.59%), Query Frame = 0


Query: 1   MGCCCDQDDDVEILRHLNPSPALHSPPPQPPPADHSA-AILSPMNSHFFALSCRDILRLI 60
           MGCCCD+DDDVEILRHL+PSP + SPP Q P    S+ A+LSPMNSHFFALSCRDILRLI
Sbjct: 1   MGCCCDEDDDVEILRHLHPSPTVQSPPQQQPTLPGSSTAVLSPMNSHFFALSCRDILRLI 60

Query: 61  FENLSIPDLARSSCVCRLWHSVASDQEIVSGAFKAPWKVKDVVGKPSSWSFWRDNCLGKF 120
           FE LSIPDLARSSCV RLW+SVASDQEIVSGAFKAPWKVKDV+GKPSS SFWRDNCLGKF
Sbjct: 61  FEKLSIPDLARSSCVSRLWNSVASDQEIVSGAFKAPWKVKDVIGKPSSGSFWRDNCLGKF 120

Query: 121 AISHRILRGDSLASLAVKYSVQVTDIKRLNNMMSDHGIYSRERLLIPIGNPNMLINSICY 180
           AISHRILRGDSLASLAVKYSVQV DIKRLNNMMSDHGIYSRER+LIPIGNPN+LINSICY
Sbjct: 121 AISHRILRGDSLASLAVKYSVQVIDIKRLNNMMSDHGIYSRERMLIPIGNPNILINSICY 180

Query: 181 IEMDAIAKREVAVLYLDGIPMTQHLYGKVTSEQGMSSVQVNKRVLHSLSRSMMVDDKTAQ 240
           IEMDAIAKREVA LYLDGIP T HLYGK T +QGMSSVQV KRVLHSLSRSMMVDD+TAQ
Sbjct: 181 IEMDAIAKREVATLYLDGIPTTHHLYGKETDDQGMSSVQVKKRVLHSLSRSMMVDDETAQ 240

Query: 241 YYLSISNGNPRAALTEFAEDIRWERHMSIA 269
           YYLSIS+G+PRAALTEFAEDIRWERHM +A
Sbjct: 241 YYLSISDGDPRAALTEFAEDIRWERHMGMA 270

[Close]

BLAST of Cucsat.G19890 vs. ExPASy TrEMBL
Match: A0A1S3BZK8 (Lipoxygenase OS=Cucumis melo OX=3656 GN=LOC103494917 PE=3 SV=1)

HSP 1 Score: 435 bits (1119), Expect = 2.59e-142
Identity = 211/218 (96.79%), Postives = 215/218 (98.62%), Query Frame = 0


Query: 1   MGCCCDQDDDVEILRHLNPSPALHSPPPQPPPADHSAAILSPMNSHFFALSCRDILRLIF 60
           MGCCCDQDDDVEILRHLNPSP +HSPP QPPPADHS AILSPMNSHFFALSCRDILRLIF
Sbjct: 1   MGCCCDQDDDVEILRHLNPSPPVHSPPLQPPPADHSTAILSPMNSHFFALSCRDILRLIF 60

Query: 61  ENLSIPDLARSSCVCRLWHSVASDQEIVSGAFKAPWKVKDVVGKPSSWSFWRDNCLGKFA 120
           E+LSIPDLARSSCVCRLWHSVASDQEIV+GAFKAPWKVKDVVGKPSSWSFWRDNCLGKFA
Sbjct: 61  EHLSIPDLARSSCVCRLWHSVASDQEIVAGAFKAPWKVKDVVGKPSSWSFWRDNCLGKFA 120

Query: 121 ISHRILRGDSLASLAVKYSVQVTDIKRLNNMMSDHGIYSRERLLIPIGNPNMLINSICYI 180
           ISHRILRGDSLASLAVKYSVQVTDIKRLNNMMSDHGIYSRERLLIPIGNPN+LINSICYI
Sbjct: 121 ISHRILRGDSLASLAVKYSVQVTDIKRLNNMMSDHGIYSRERLLIPIGNPNILINSICYI 180

Query: 181 EMDAIAKREVAVLYLDGIPMTQHLYGKVTSEQGMSSVQ 218
           EMDAIAKREVAVLYLDGIPMTQHLYGKVTSEQGMSSVQ
Sbjct: 181 EMDAIAKREVAVLYLDGIPMTQHLYGKVTSEQGMSSVQ 218

The following BLAST results are available for this feature:

BLAST of Cucsat.G19890 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FZ32	8.1e-74	60.00	F-box protein At1g55000 OS=Arabidopsis thaliana OX=3702 GN=At1g55000 PE=1 SV=1	[more]
Q6DEF4	6.7e-04	40.38	LysM and putative peptidoglycan-binding domain-containing protein 2 OS=Danio rer...	[more]
Q7Z3D4	6.7e-04	31.34	LysM and putative peptidoglycan-binding domain-containing protein 3 OS=Homo sapi...	[more]

BLAST of Cucsat.G19890 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004139174.1	2.13e-196	99.63	F-box protein At1g55000 [Cucumis sativus] >KGN60915.1 hypothetical protein Csa_0...	[more]
XP_038877035.1	1.26e-179	91.82	F-box protein At1g55000 [Benincasa hispida]	[more]
XP_022150720.1	1.91e-174	89.96	F-box protein At1g55000 [Momordica charantia]	[more]
XP_022937590.1	1.05e-169	88.15	F-box protein At1g55000 [Cucurbita moschata]	[more]
KAG6586259.1	3.01e-169	87.78	F-box protein, partial [Cucurbita argyrosperma subsp. sororia] >KAG7021103.1 F-b...	[more]

BLAST of Cucsat.G19890 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LFS6	1.03e-196	99.63	LysM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G022840 PE=4 S...	[more]
A0A6J1D9A3	9.24e-175	89.96	F-box protein At1g55000 OS=Momordica charantia OX=3673 GN=LOC111018786 PE=4 SV=1	[more]
A0A6J1FH66	5.08e-170	88.15	F-box protein At1g55000 OS=Cucurbita moschata OX=3662 GN=LOC111443952 PE=4 SV=1	[more]
A0A6J1HS58	1.70e-168	87.41	F-box protein At1g55000 OS=Cucurbita maxima OX=3661 GN=LOC111465634 PE=4 SV=1	[more]
A0A1S3BZK8	2.59e-142	96.79	Lipoxygenase OS=Cucumis melo OX=3656 GN=LOC103494917 PE=3 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR018392	LysM domain	SMART	SM00257	LysM_2	coord: 122..166 e-value: 3.3E-4 score: 30.0
IPR018392	LysM domain	PFAM	PF01476	LysM	coord: 124..166 e-value: 9.5E-7 score: 28.8
IPR018392	LysM domain	PROSITE	PS51782	LYSM	coord: 121..165 score: 11.711089
IPR018392	LysM domain	CDD	cd00118	LysM	coord: 121..165 e-value: 8.29917E-8 score: 45.5541
IPR036779	LysM domain superfamily	GENE3D	3.10.350.10	LysM domain	coord: 117..172 e-value: 3.6E-13 score: 50.9
IPR036779	LysM domain superfamily	SUPERFAMILY	54106	LysM domain	coord: 122..166
None	No IPR available	GENE3D	1.20.1280.50		coord: 53..87 e-value: 5.4E-8 score: 34.7
None	No IPR available	PANTHER	PTHR20932:SF8	LD22649P	coord: 1..268
IPR001810	F-box domain	PFAM	PF12937	F-box-like	coord: 54..85 e-value: 4.2E-6 score: 26.6
IPR045030	LysM and putative peptidoglycan-binding domain-containing protein 1-4	PANTHER	PTHR20932	LOC443603 PROTEIN-RELATED	coord: 1..268
IPR036047	F-box-like domain superfamily	SUPERFAMILY	81383	F-box domain	coord: 54..113

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsat.G19890.T1	Cucsat.G19890.T1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006633	fatty acid biosynthetic process
biological_process	GO:0031408	oxylipin biosynthetic process
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0016702	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
molecular_function	GO:0005515	protein binding