Cucsat.G19538 (gene) Cucumber (B10) v3

Overview


Name	Cucsat.G19538
Type	gene
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	Histone H1-like
Location	ctg4: 1935911 .. 1937293 (-)
RNA-Seq Expression	Cucsat.G19538
Synteny	Cucsat.G19538

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCTCCTCATCGAATTTTCTCTCTCTAAAATATTTTCCTCTCCCTCTCTTCTAATCGATTCCATTTCCAATAATGTCTTCCGCCGCTGATTCCGTCATCATCTCCGATGCTCCCGCTGCAGCGGTGGCCCAGCCAGCTGAGAACGACTCCAAGGCTAAGAAAGCTGCGGCATCGAAAGCATCGAAGGCTAAGAAACCATCTGGTGCGAAGAAGGCTAGATCTTCTCCGACTCACCCTCCGTTCCTTCAGGTGTGTATGGATGATTGATCTTTGTTTTGATTGTTTATGGTTATTCCGATCGAGTTTTTACGTTTTGTTCTGATTGAATTTTGAAATTGTTTCTCTAGATGATTAGCGAAGCGATCGTTTCTCTGAAGGAGAGAACCGGCTCGAGTCAGTACGCCATTACGAAGTTCACTGAAGAGAAACACAAACAATTGCCTTCCAATTTCAGGAAGCTTTTGCTTGTTCATCTCAAAAAACTTGTCGCCGCTGAAAAACTCGTTAAGGTTAAGAACTCCTATAAGCTTCCATCGGCTCGTTCTATTCAAGCAAAAGCCGCAGCAGCAGCAGCAGCACCAGTCACCGCCAAGAAGCCTGTAAGCTCAAAACTCAAAGCAGCAAGCATCAAGAAAGCCGCCGTTGCCAAATCGAAAGCCAAAACTTCTGCGAAACCTAAGCCGAAAGCTGTAGCGAAGCCGAAGCCGAAGACAGTTGCTAAATCCAAGACCGTCGCGAAACCAAAAACCGCCGCGAAGACGAAGGCAGCTGAGAAGGTTAAGAAGGTTGCTCCGAAGCCTAAACCAGCAGCAGCCAAGGCAGCGAAAGTAGCGAAAACACTGTCGCGAACTTCGCCAGGAAAGAGAGCCGCACCGGCGACAAAGGCGAAGAAAGTGGCGGCGAAGAAGCCAAAGACGGTAAAGTCGCCGGCGAGGAAAGTCCAGGCAAGGAAAGTCAAGAAATGAATTATGTGTTTAGGGTTTTTGATTAATTTCTAGGGTTTTCTTATTAATAGTACGTAGCGATGTAAATTAGGGATATGATATGAGAGATGCAACCGTTCGTTGTTATACAATATTTTTATCAAATTTTAGTTTGGTAAATTCTCAATGGTCTATCTTCAAATCAGTCTTTTCTTTTGAATGATCATCTCTTTGCTTCTGGTTTATCGTTAAAGCTTTTTGAGTTTTGCTTCAATGGCGGATTCCCGTAATTAAAAGCGTCGTTTTGGTCGTTTATGTACATAAAACGCAAATTTCATAATCAGAACAGTTCACGTGCGTTGCACGCGATTTCGAACCCACGTCGGCACCACGTGGCTAATTTTTTGGAACTTCTGATTAAACTTTAATTATTTATTAATTTTGGGATTCGGTGTTATTT

Coding sequence (CDS)

ATGTCTTCCGCCGCTGATTCCGTCATCATCTCCGATGCTCCCGCTGCAGCGGTGGCCCAGCCAGCTGAGAACGACTCCAAGGCTAAGAAAGCTGCGGCATCGAAAGCATCGAAGGCTAAGAAACCATCTGGTGCGAAGAAGGCTAGATCTTCTCCGACTCACCCTCCGTTCCTTCAGATGATTAGCGAAGCGATCGTTTCTCTGAAGGAGAGAACCGGCTCGAGTCAGTACGCCATTACGAAGTTCACTGAAGAGAAACACAAACAATTGCCTTCCAATTTCAGGAAGCTTTTGCTTGTTCATCTCAAAAAACTTGTCGCCGCTGAAAAACTCGTTAAGGTTAAGAACTCCTATAAGCTTCCATCGGCTCGTTCTATTCAAGCAAAAGCCGCAGCAGCAGCAGCAGCACCAGTCACCGCCAAGAAGCCTGTAAGCTCAAAACTCAAAGCAGCAAGCATCAAGAAAGCCGCCGTTGCCAAATCGAAAGCCAAAACTTCTGCGAAACCTAAGCCGAAAGCTGTAGCGAAGCCGAAGCCGAAGACAGTTGCTAAATCCAAGACCGTCGCGAAACCAAAAACCGCCGCGAAGACGAAGGCAGCTGAGAAGGTTAAGAAGGTTGCTCCGAAGCCTAAACCAGCAGCAGCCAAGGCAGCGAAAGTAGCGAAAACACTGTCGCGAACTTCGCCAGGAAAGAGAGCCGCACCGGCGACAAAGGCGAAGAAAGTGGCGGCGAAGAAGCCAAAGACGGTAAAGTCGCCGGCGAGGAAAGTCCAGGCAAGGAAAGTCAAGAAATGA

Protein sequence

MSSAADSVIISDAPAAAVAQPAENDSKAKKAAASKASKAKKPSGAKKARSSPTHPPFLQMISEAIVSLKERTGSSQYAITKFTEEKHKQLPSNFRKLLLVHLKKLVAAEKLVKVKNSYKLPSARSIQAKAAAAAAAPVTAKKPVSSKLKAASIKKAAVAKSKAKTSAKPKPKAVAKPKPKTVAKSKTVAKPKTAAKTKAAEKVKKVAPKPKPAAAKAAKVAKTLSRTSPGKRAAPATKAKKVAAKKPKTVKSPARKVQARKVKK

Homology

[Close]

BLAST of Cucsat.G19538 vs. ExPASy Swiss-Prot
Match: P37218 (Histone H1 OS=Solanum lycopersicum OX=4081 PE=3 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 3.5e-37
Identity = 144/283 (50.88%), Postives = 173/283 (61.13%), Query Frame = 0


Query: 10  ISDAPAAAVAQPAENDSKAKKAAASKASKAKKPSGAKKARSSPTHPPFLQMISEAIVSLK 69
           + +  AA      E +  AK   A K +KAKKP+  +K  ++PTHPP+ +MI +AIV+LK
Sbjct: 12  VVEEQAAPETVKDEANPPAKSGKAKKETKAKKPAAPRKRSATPTHPPYFEMIKDAIVTLK 71

Query: 70  ERTGSSQYAITKFTEEKHKQLPSNFRKLLLVHLKKLVAAEKLVKVKNSYKLPSARSIQAK 129
           ERTGSSQ+AITKF EEK K LPSNF+KLLL  LKK VA+EKLVKVKNSYKLPS       
Sbjct: 72  ERTGSSQHAITKFIEEKQKSLPSNFKKLLLTQLKKFVASEKLVKVKNSYKLPSG------ 131

Query: 130 AAAAAAAPVTAKKPVSSKLKAASIKKAAVAKSKAKTSAKPKPKAVAKP--KPKTVAKSKT 189
           +  AAAA    KKP ++K K A+  KAAV K KAK +AK KP A AKP  K K  AK+K 
Sbjct: 132 SKPAAAAVPAKKKPAAAKSKPAAKPKAAV-KPKAKPAAKAKPAAKAKPAAKAKPAAKAKP 191

Query: 190 VAKPKTAAKTKAAEKVK---------KVAPKPKPAAAK--------------AAKVAKTL 249
            AK K AAK K   K K         K A KPK A AK               AKVAKT 
Sbjct: 192 AAKAKPAAKAKPVAKAKPKAAAAAKPKAAVKPKAAPAKTKAAVKPNLKAKTTTAKVAKTA 251

Query: 250 SRTSPGKRAAP-ATKAKKVAAKK--PKTVKSPARKVQARKVKK 265
           +RT+P ++AAP AT AKK   KK   K VKSPA+K   ++ +K
Sbjct: 252 TRTTPSRKAAPKATPAKKEPVKKAPAKNVKSPAKKATPKRGRK 287

[Close]

BLAST of Cucsat.G19538 vs. ExPASy Swiss-Prot
Match: Q9M5W4 (Histone H1 OS=Euphorbia esula OX=3993 PE=2 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 8.6e-36
Identity = 141/253 (55.73%), Postives = 157/253 (62.06%), Query Frame = 0


Query: 10  ISDAPAAAVAQPAENDSKAK---KAAASKASKAKKP-SGAKKARSSPT--HPPFLQMISE 69
           ++D P +A   P   + K+K   KAAA K  K KK    AKK +S  T  HP F +MIS+
Sbjct: 1   MADTPVSAPVVPEVTERKSKRGTKAAAVKVPKEKKKVIAAKKPKSKGTSSHPSFFEMISD 60

Query: 70  AIVSLKERTGSSQYAITKFTEEKHKQLPSNFRKLLLVHLKKLVAAEKLVKVKNSYKLPSA 129
           AI +LKERTGSSQYAI KF E+KHKQLPSNFRKLLL HLKKLVA+ KLVKVKNS+KLPSA
Sbjct: 61  AISTLKERTGSSQYAINKFVEDKHKQLPSNFRKLLLFHLKKLVASGKLVKVKNSFKLPSA 120

Query: 130 RSIQAKAAAAAAAPVTAKKPVSSKLKAASIKKAAVAKSKAKTSAKPKPKAVAKPKPKTVA 189
           R        AA AP  AKKP   K K A+  K       AK  AKPK K  AK   KT A
Sbjct: 121 R--------AAPAPALAKKPTIPKPKVAAKPKT------AKIGAKPKAK--AKVAAKTKA 180

Query: 190 KSKTVAKPKTAAKTKAAEKVKKVAPKPKPAAAKAAKVAKTLSRTSPGKRAAPATKAKKVA 249
            +KTVAK   AAK KA     K A KPK  AAK AKVAKT +  SPGK+       K V 
Sbjct: 181 TTKTVAKKIPAAKPKA-----KTAGKPKTVAAKPAKVAKTAAVASPGKK-------KAVP 225

Query: 250 AKKPKTVKSPARK 257
            KK KTVKSPA K
Sbjct: 241 VKKVKTVKSPAGK 225

[Close]

BLAST of Cucsat.G19538 vs. ExPASy Swiss-Prot
Match: P23444 (Histone H1 OS=Zea mays OX=4577 PE=2 SV=2)

HSP 1 Score: 140.2 bits (352), Expect = 3.4e-32
Identity = 139/265 (52.45%), Postives = 156/265 (58.87%), Query Frame = 0


Query: 5   ADSVIISDAPAAAVAQPAENDSKAKKAAASKASKAKKPSGAKKARSSPTHPPFLQMISEA 64
           A  V  + AP    A  A  D+ A  AA + A+KAKK +  KK R+SPTH P+ +M+SEA
Sbjct: 2   ATDVTETPAPLVDAAPEAPADAPAAPAADANAAKAKKATAPKK-RASPTHLPYAEMVSEA 61

Query: 65  IVSLKERTGSSQYAITKFTEEKHK-QLPSNFRKLLLVHLKKLVAAEKLVKVKNSYKLPSA 124
           I SLKERTGSS YAI KF E+KHK +LP NFRKLL V LKKLVA  KL KVKNSYKL SA
Sbjct: 62  ITSLKERTGSSSYAIAKFVEDKHKAKLPPNFRKLLNVQLKKLVAGGKLTKVKNSYKLSSA 121

Query: 125 RSIQAKAAAAAAAPVTAKKPVSSKLKAASIKKAAVAKSKAKTSAKPKPKAVAKP--KPKT 184
                K  AA   P T  K           K  A AK KAKT AK KP    KP  KPK 
Sbjct: 122 TKPNPKPKAAPKKPKTGAK-----------KPKAAAKPKAKTPAKAKPATKPKPAAKPKA 181

Query: 185 VAKSKTVAKPKTAAKTKAAEKVKKVAPKPKPAAAKA--AKVAKTLSRTSPGKRAAPATKA 244
           V K KT AKPK  AK  A  K K    KPKP A KA  AK AKT ++ +PGK+ APA KA
Sbjct: 182 VVKPKTPAKPK--AKPAAKAKPKTAGAKPKPLAKKAGRAKAAKTSAKDTPGKK-APAKKA 241

Query: 245 KKVAAKKPKTVKSPARKVQARKVKK 265
               +KK  T   P RK  +RK KK
Sbjct: 242 --APSKKAAT---PVRKAPSRKAKK 246

[Close]

BLAST of Cucsat.G19538 vs. ExPASy Swiss-Prot
Match: P26569 (Histone H1.2 OS=Arabidopsis thaliana OX=3702 GN=At2g30620 PE=1 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 1.7e-31
Identity = 140/276 (50.72%), Postives = 171/276 (61.96%), Query Frame = 0


Query: 2   SSAADSVIISDAPAAAVAQPAENDSKAKKAAASKASKAK-KPSGAKKARSSPTHPPFLQM 61
           S AAD+ + S        +PA    K+KK   +KA+K   K +   K +++ +HP + +M
Sbjct: 14  SGAADTTVKSPE-----KKPAAKGGKSKKTTTAKATKKPVKAAAPTKKKTTSSHPTYEEM 73

Query: 62  ISEAIVSLKERTGSSQYAITKFTEEKHKQLPSNFRKLLLVHLKKLVAAEKLVKVKNSYKL 121
           I +AIV+LKERTGSSQYAI KF EEKHK LP  FRKLLLV+LK+LVA+EKLVKVK S+K+
Sbjct: 74  IKDAIVTLKERTGSSQYAIQKFIEEKHKSLPPTFRKLLLVNLKRLVASEKLVKVKASFKI 133

Query: 122 PSARSIQAKAAAAAAAPVTAKKPVSSKLKAASIKKAAVAKSKAKTSAKPKPKAVAKPKPK 181
           PSARS    A    AAPV  K  V +K K      AAVA +KAK +A    K   KP  K
Sbjct: 134 PSARS---AATPKPAAPVKKKATVVAKPKGK--VAAAVAPAKAKAAA----KGTKKPAAK 193

Query: 182 TVAKSKTVAKPK---TAAKTK-----AAEKVKKVAPKPKPAAAKAAKVAKTLSRTSPGKR 241
            VAK+K  AKPK   TAAK K     A  K K VA KPK A  + AK ++T +RTSPGK+
Sbjct: 194 VVAKAKVTAKPKAKVTAAKPKSKSVAAVSKTKAVAAKPK-AKERPAKASRTSTRTSPGKK 253

Query: 242 -AAPATK---AKKVAAKKPKTVKSPARKVQARKVKK 265
            AAPA K    KK  AK  K VKSPA++   RK KK
Sbjct: 254 VAAPAKKVAVTKKAPAKSVK-VKSPAKRASTRKAKK 273

[Close]

BLAST of Cucsat.G19538 vs. ExPASy Swiss-Prot
Match: P08283 (Histone H1 OS=Pisum sativum OX=3888 PE=2 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 1.6e-29
Identity = 128/258 (49.61%), Postives = 157/258 (60.85%), Query Frame = 0


Query: 18  VAQPAENDSKAKKAAASKASKAK--KPSGAKKARSSPTHPPFLQMISEAIVSLKERTGSS 77
           + +P   + +  KA   K  KAK  KP  A K R+  +HP + +MI +AIVSLKE+ GSS
Sbjct: 24  ITEPEVPEKEEPKAEVEKTKKAKGSKPKKASKPRNPASHPTYEEMIKDAIVSLKEKNGSS 83

Query: 78  QYAITKFTEEKHKQLPSNFRKLLLVHLKKLVAAEKLVKVKNSYKLPSARSIQAKAAAAAA 137
           QYAI KF EEK KQLP+NF+KLLL +LKK VA+ KL+KVK S+KL +A            
Sbjct: 84  QYAIAKFIEEKQKQLPANFKKLLLQNLKKNVASGKLIKVKGSFKLSAA------------ 143

Query: 138 APVTAKKPVSSKLKAASIKKAAVAKS-KAKTSAKPKPKAVAKPKPKTVAKS------KTV 197
               AKKP  +K KA   K AA AKS KAK +AKPK KAV KPK  + AK+      K  
Sbjct: 144 ----AKKPAVAKPKA---KTAAKAKSVKAKPAAKPKAKAVVKPKVASKAKAVAAKPKKAA 203

Query: 198 AKPKT-AAKTKAAEKVKKVAPKPKPAAAKAAKVAKTLSRTSPGKRAAPATK--AKKVAAK 257
           AKPKT AAKTK      K   KPK +  K AKVAKT  +T+PGK+ A   K  AKKV  K
Sbjct: 204 AKPKTVAAKTKPTAAKPKAVVKPK-SKVKPAKVAKTSVKTTPGKKVAAVKKVAAKKVPVK 261

Query: 258 --KPKTVKSPARKVQARK 262
             K K+VKSP +KV  ++
Sbjct: 264 SVKAKSVKSPVKKVSVKR 261

[Close]

BLAST of Cucsat.G19538 vs. NCBI nr
Match: XP_004139246.1 (histone H1 [Cucumis sativus] >KAE8651556.1 hypothetical protein Csa_019256 [Cucumis sativus])

HSP 1 Score: 416 bits (1069), Expect = 9.14e-145
Identity = 262/264 (99.24%), Postives = 263/264 (99.62%), Query Frame = 0


Query: 1   MSSAADSVIISDAPAAAVAQPAENDSKAKKAAASKASKAKKPSGAKKARSSPTHPPFLQM 60
           MSSAADSVIISDAPAAAVAQPAENDSKAKKAAASKASKAKKPSGAKKARSSPTHPPFLQM
Sbjct: 1   MSSAADSVIISDAPAAAVAQPAENDSKAKKAAASKASKAKKPSGAKKARSSPTHPPFLQM 60

Query: 61  ISEAIVSLKERTGSSQYAITKFTEEKHKQLPSNFRKLLLVHLKKLVAAEKLVKVKNSYKL 120
           ISEAIVSLKERTGSSQYAITKFTEEKHKQLPSNFRKLLLVHLKKLVAAEKLVKVKNSYKL
Sbjct: 61  ISEAIVSLKERTGSSQYAITKFTEEKHKQLPSNFRKLLLVHLKKLVAAEKLVKVKNSYKL 120

Query: 121 PSARSIQAKAAAAAAAPVTAKKPVSSKLKAASIKKAAVAKSKAKTSAKPKPKAVAKPKPK 180
           PSARSIQAKAAAAAAAPVTAKKPVSSKLKAASIKKAAVAKSKAKT+AKPKPKAVAKPKPK
Sbjct: 121 PSARSIQAKAAAAAAAPVTAKKPVSSKLKAASIKKAAVAKSKAKTAAKPKPKAVAKPKPK 180

Query: 181 TVAKSKTVAKPKTAAKTKAAEKVKKVAPKPKPAAAKAAKVAKTLSRTSPGKRAAPATKAK 240
           TVAKSKTVAKPKTAAKTKAAEKVKKVAPKPKPAA KAAKVAKTLSRTSPGKRAAPATKAK
Sbjct: 181 TVAKSKTVAKPKTAAKTKAAEKVKKVAPKPKPAA-KAAKVAKTLSRTSPGKRAAPATKAK 240

Query: 241 KVAAKKPKTVKSPARKVQARKVKK 264
           KVAAKKPKTVKSPARKVQARKVKK
Sbjct: 241 KVAAKKPKTVKSPARKVQARKVKK 263

[Close]

BLAST of Cucsat.G19538 vs. NCBI nr
Match: KAA0063593.1 (histone H1-like [Cucumis melo var. makuwa] >TYK18434.1 histone H1-like [Cucumis melo var. makuwa])

HSP 1 Score: 377 bits (967), Expect = 3.31e-129
Identity = 247/268 (92.16%), Postives = 251/268 (93.66%), Query Frame = 0


Query: 1   MSSAADSVIISDAPAAA---VAQPAENDSKAKKAAASKASKAKKPSGAKKARSSPTHPPF 60
           MSSAAD V+ SDAPAAA   VAQPAENDSK+KKAAASKASKAKKPSGAKKARSSPTHPPF
Sbjct: 1   MSSAADPVVSSDAPAAADAAVAQPAENDSKSKKAAASKASKAKKPSGAKKARSSPTHPPF 60

Query: 61  LQMISEAIVSLKERTGSSQYAITKFTEEKHKQLPSNFRKLLLVHLKKLVAAEKLVKVKNS 120
           LQMISEAIVSLKERTGSSQYAITKFTEEKHKQLPSNFRKLLLVHLKKLVAA+KLVKVKNS
Sbjct: 61  LQMISEAIVSLKERTGSSQYAITKFTEEKHKQLPSNFRKLLLVHLKKLVAADKLVKVKNS 120

Query: 121 YKLPSARSIQAKAAAAAAAPVTAKKPVSSKLKA-ASIKKAAVAKSKAKTSAKPKPKAVAK 180
           YKLPSARSIQAKAAAAA  PV  KKPVSSKLKA ASIKK AVAK KAKT+AKPKPKAVAK
Sbjct: 121 YKLPSARSIQAKAAAAA--PVATKKPVSSKLKAVASIKKPAVAKPKAKTAAKPKPKAVAK 180

Query: 181 PKPKTVAKSKTVAKPKTAAKTKAAEKVKKVAPKPKPAAAKAAKVAKTLSRTSPGKRAAPA 240
           PKPKTV KSKTVAKPKTAAKTKAAEKVKKVAPKPK A AKA KVAKTLSRTSPGKRAAPA
Sbjct: 181 PKPKTVTKSKTVAKPKTAAKTKAAEKVKKVAPKPK-AGAKATKVAKTLSRTSPGKRAAPA 240

Query: 241 TKAKKVAAKKPKTVKSPARKVQARKVKK 264
            KAKKVAAKKPKTVKSPARKVQARKVKK
Sbjct: 241 AKAKKVAAKKPKTVKSPARKVQARKVKK 265

[Close]

BLAST of Cucsat.G19538 vs. NCBI nr
Match: XP_008456174.1 (PREDICTED: histone H1-like [Cucumis melo])

HSP 1 Score: 374 bits (959), Expect = 5.46e-128
Identity = 246/268 (91.79%), Postives = 250/268 (93.28%), Query Frame = 0


Query: 1   MSSAADSVIISDAPAAA---VAQPAENDSKAKKAAASKASKAKKPSGAKKARSSPTHPPF 60
           MSSAAD V+ SDAPAAA   VAQPAENDSK+KKAAASKASKAKKPSGAKKARSSPTHPPF
Sbjct: 1   MSSAADPVVSSDAPAAADAAVAQPAENDSKSKKAAASKASKAKKPSGAKKARSSPTHPPF 60

Query: 61  LQMISEAIVSLKERTGSSQYAITKFTEEKHKQLPSNFRKLLLVHLKKLVAAEKLVKVKNS 120
           LQMISEAIVSLKERTGSSQYAITKFTEEKHKQLPSNFRKLLLVHLKKLVAA+KLVKVKNS
Sbjct: 61  LQMISEAIVSLKERTGSSQYAITKFTEEKHKQLPSNFRKLLLVHLKKLVAADKLVKVKNS 120

Query: 121 YKLPSARSIQAKAAAAAAAPVTAKKPVSSKLKA-ASIKKAAVAKSKAKTSAKPKPKAVAK 180
           YKLPSARSIQAKAAAAA  PV  KKPVSSKLKA ASIKK AVAK KAKT+AK KPKAVAK
Sbjct: 121 YKLPSARSIQAKAAAAA--PVATKKPVSSKLKAVASIKKPAVAKPKAKTAAKSKPKAVAK 180

Query: 181 PKPKTVAKSKTVAKPKTAAKTKAAEKVKKVAPKPKPAAAKAAKVAKTLSRTSPGKRAAPA 240
           PKPKTV KSKTVAKPKTAAKTKAAEKVKKVAPKPK A AKA KVAKTLSRTSPGKRAAPA
Sbjct: 181 PKPKTVTKSKTVAKPKTAAKTKAAEKVKKVAPKPK-AGAKATKVAKTLSRTSPGKRAAPA 240

Query: 241 TKAKKVAAKKPKTVKSPARKVQARKVKK 264
            KAKKVAAKKPKTVKSPARKVQARKVKK
Sbjct: 241 AKAKKVAAKKPKTVKSPARKVQARKVKK 265

[Close]

BLAST of Cucsat.G19538 vs. NCBI nr
Match: KAG6599320.1 (Histone H1.2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 335 bits (860), Expect = 5.25e-113
Identity = 228/269 (84.76%), Postives = 236/269 (87.73%), Query Frame = 0


Query: 1   MSSAADSVIISDAPA--AAVAQPAENDSKAKKAAASKASKAKKPSGAKKARSSPTHPPFL 60
           MSSAAD V  SDAPA  AAVAQP ENDSK+KKAAASKASKAKKPSGAK+ RSSPTHPPF 
Sbjct: 1   MSSAADPVASSDAPATVAAVAQPVENDSKSKKAAASKASKAKKPSGAKRTRSSPTHPPFF 60

Query: 61  QMISEAIVSLKERTGSSQYAITKFTEEKHKQLPSNFRKLLLVHLKKLVAAEKLVKVKNSY 120
           +MISEAIVSLKERTGSSQYAITKF+EEKHKQLPSNFRKLLLVHLKKLVAA+KLVKVKNSY
Sbjct: 61  EMISEAIVSLKERTGSSQYAITKFSEEKHKQLPSNFRKLLLVHLKKLVAADKLVKVKNSY 120

Query: 121 KLPSARSIQAKAAAAAAAPVTAKKPVSSKLKAA-SIKKAAVAKSKAKTSAKPKPKAVAKP 180
           KLPSARS       AAAAPV AKKP SSKLKAA S+KKAAVAK KAKT+ KPKPKAVAKP
Sbjct: 121 KLPSARS------KAAAAPVVAKKPASSKLKAAVSVKKAAVAKPKAKTAVKPKPKAVAKP 180

Query: 181 KPKTVAKSKTVAKPKTAA--KTKAAEKVKKVAPKPKPAAAKAAKVAKTLSRTSPGKRAAP 240
           K    AKSK VAKPK  A  K KAAEKVKKVAPKPKPAA K AKVAKTLSRTSPGK+AAP
Sbjct: 181 K--AAAKSKVVAKPKAVAPAKRKAAEKVKKVAPKPKPAA-KPAKVAKTLSRTSPGKKAAP 240

Query: 241 ATKAKKVAAKKPKTVKSPARKVQARKVKK 264
           A KAKKVAAKKPKTVKSPARKVQARKVKK
Sbjct: 241 AAKAKKVAAKKPKTVKSPARKVQARKVKK 260

[Close]

BLAST of Cucsat.G19538 vs. NCBI nr
Match: XP_022946127.1 (histone H1-like [Cucurbita moschata] >KAG7030316.1 Histone H1.2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 334 bits (857), Expect = 1.50e-112
Identity = 227/269 (84.39%), Postives = 237/269 (88.10%), Query Frame = 0


Query: 1   MSSAADSVIISDAPA--AAVAQPAENDSKAKKAAASKASKAKKPSGAKKARSSPTHPPFL 60
           MSSAAD V  SDAPA  AAVAQP ENDSK+KKAAASKASKAKKPSGAK+ RSSPTHPPF 
Sbjct: 1   MSSAADPVASSDAPATVAAVAQPVENDSKSKKAAASKASKAKKPSGAKRTRSSPTHPPFF 60

Query: 61  QMISEAIVSLKERTGSSQYAITKFTEEKHKQLPSNFRKLLLVHLKKLVAAEKLVKVKNSY 120
           +MISEAIVSLKERTGSSQYAITKF+EEKHK+LPSNFRKLLLVHLKKLVAA+KLVKVKNSY
Sbjct: 61  EMISEAIVSLKERTGSSQYAITKFSEEKHKKLPSNFRKLLLVHLKKLVAADKLVKVKNSY 120

Query: 121 KLPSARSIQAKAAAAAAAPVTAKKPVSSKLKAA-SIKKAAVAKSKAKTSAKPKPKAVAKP 180
           KLPSARS       AAAAPV AKKP SSKLKAA S+KKAAVAK KAKT+ KPKPKAVAKP
Sbjct: 121 KLPSARS------KAAAAPVVAKKPASSKLKAAVSVKKAAVAKPKAKTAVKPKPKAVAKP 180

Query: 181 KPKTVAKSKTVAKPKTAA--KTKAAEKVKKVAPKPKPAAAKAAKVAKTLSRTSPGKRAAP 240
           K  + AKSK VAKPK  A  K KAAEKVKKVAPKPKPAA K AKVAKTLSRTSPGK+AAP
Sbjct: 181 K--SAAKSKVVAKPKAVAPAKRKAAEKVKKVAPKPKPAA-KPAKVAKTLSRTSPGKKAAP 240

Query: 241 ATKAKKVAAKKPKTVKSPARKVQARKVKK 264
           A KAKKVAAKKPKTVKSPARKVQARKVKK
Sbjct: 241 AAKAKKVAAKKPKTVKSPARKVQARKVKK 260

[Close]

BLAST of Cucsat.G19538 vs. ExPASy TrEMBL
Match: A0A5D3D4H1 (Histone H1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold456G001600 PE=3 SV=1)

HSP 1 Score: 377 bits (967), Expect = 1.60e-129
Identity = 247/268 (92.16%), Postives = 251/268 (93.66%), Query Frame = 0


Query: 1   MSSAADSVIISDAPAAA---VAQPAENDSKAKKAAASKASKAKKPSGAKKARSSPTHPPF 60
           MSSAAD V+ SDAPAAA   VAQPAENDSK+KKAAASKASKAKKPSGAKKARSSPTHPPF
Sbjct: 1   MSSAADPVVSSDAPAAADAAVAQPAENDSKSKKAAASKASKAKKPSGAKKARSSPTHPPF 60

Query: 61  LQMISEAIVSLKERTGSSQYAITKFTEEKHKQLPSNFRKLLLVHLKKLVAAEKLVKVKNS 120
           LQMISEAIVSLKERTGSSQYAITKFTEEKHKQLPSNFRKLLLVHLKKLVAA+KLVKVKNS
Sbjct: 61  LQMISEAIVSLKERTGSSQYAITKFTEEKHKQLPSNFRKLLLVHLKKLVAADKLVKVKNS 120

Query: 121 YKLPSARSIQAKAAAAAAAPVTAKKPVSSKLKA-ASIKKAAVAKSKAKTSAKPKPKAVAK 180
           YKLPSARSIQAKAAAAA  PV  KKPVSSKLKA ASIKK AVAK KAKT+AKPKPKAVAK
Sbjct: 121 YKLPSARSIQAKAAAAA--PVATKKPVSSKLKAVASIKKPAVAKPKAKTAAKPKPKAVAK 180

Query: 181 PKPKTVAKSKTVAKPKTAAKTKAAEKVKKVAPKPKPAAAKAAKVAKTLSRTSPGKRAAPA 240
           PKPKTV KSKTVAKPKTAAKTKAAEKVKKVAPKPK A AKA KVAKTLSRTSPGKRAAPA
Sbjct: 181 PKPKTVTKSKTVAKPKTAAKTKAAEKVKKVAPKPK-AGAKATKVAKTLSRTSPGKRAAPA 240

Query: 241 TKAKKVAAKKPKTVKSPARKVQARKVKK 264
            KAKKVAAKKPKTVKSPARKVQARKVKK
Sbjct: 241 AKAKKVAAKKPKTVKSPARKVQARKVKK 265

[Close]

BLAST of Cucsat.G19538 vs. ExPASy TrEMBL
Match: A0A1S3C278 (histone H1-like OS=Cucumis melo OX=3656 GN=LOC103496189 PE=3 SV=1)

HSP 1 Score: 374 bits (959), Expect = 2.64e-128
Identity = 246/268 (91.79%), Postives = 250/268 (93.28%), Query Frame = 0


Query: 1   MSSAADSVIISDAPAAA---VAQPAENDSKAKKAAASKASKAKKPSGAKKARSSPTHPPF 60
           MSSAAD V+ SDAPAAA   VAQPAENDSK+KKAAASKASKAKKPSGAKKARSSPTHPPF
Sbjct: 1   MSSAADPVVSSDAPAAADAAVAQPAENDSKSKKAAASKASKAKKPSGAKKARSSPTHPPF 60

Query: 61  LQMISEAIVSLKERTGSSQYAITKFTEEKHKQLPSNFRKLLLVHLKKLVAAEKLVKVKNS 120
           LQMISEAIVSLKERTGSSQYAITKFTEEKHKQLPSNFRKLLLVHLKKLVAA+KLVKVKNS
Sbjct: 61  LQMISEAIVSLKERTGSSQYAITKFTEEKHKQLPSNFRKLLLVHLKKLVAADKLVKVKNS 120

Query: 121 YKLPSARSIQAKAAAAAAAPVTAKKPVSSKLKA-ASIKKAAVAKSKAKTSAKPKPKAVAK 180
           YKLPSARSIQAKAAAAA  PV  KKPVSSKLKA ASIKK AVAK KAKT+AK KPKAVAK
Sbjct: 121 YKLPSARSIQAKAAAAA--PVATKKPVSSKLKAVASIKKPAVAKPKAKTAAKSKPKAVAK 180

Query: 181 PKPKTVAKSKTVAKPKTAAKTKAAEKVKKVAPKPKPAAAKAAKVAKTLSRTSPGKRAAPA 240
           PKPKTV KSKTVAKPKTAAKTKAAEKVKKVAPKPK A AKA KVAKTLSRTSPGKRAAPA
Sbjct: 181 PKPKTVTKSKTVAKPKTAAKTKAAEKVKKVAPKPK-AGAKATKVAKTLSRTSPGKRAAPA 240

Query: 241 TKAKKVAAKKPKTVKSPARKVQARKVKK 264
            KAKKVAAKKPKTVKSPARKVQARKVKK
Sbjct: 241 AKAKKVAAKKPKTVKSPARKVQARKVKK 265

[Close]

BLAST of Cucsat.G19538 vs. ExPASy TrEMBL
Match: A0A0A0LLA4 (H15 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G010270 PE=3 SV=1)

HSP 1 Score: 370 bits (950), Expect = 2.66e-127
Identity = 239/264 (90.53%), Postives = 240/264 (90.91%), Query Frame = 0


Query: 1   MSSAADSVIISDAPAAAVAQPAENDSKAKKAAASKASKAKKPSGAKKARSSPTHPPFLQM 60
           MSSAADSVIISDAPAAAVAQPAENDSKAKKAAASKASKAKKPSGAKKARSSPTHPPFLQM
Sbjct: 1   MSSAADSVIISDAPAAAVAQPAENDSKAKKAAASKASKAKKPSGAKKARSSPTHPPFLQM 60

Query: 61  ISEAIVSLKERTGSSQYAITKFTEEKHKQLPSNFRKLLLVHLKKLVAAEKLVKVKNSYKL 120
           ISEAIVSLKERTGSSQYAITKFTEEKHKQLPSNFRKLLLVHLKKLVAAEKLVKVKNSYKL
Sbjct: 61  ISEAIVSLKERTGSSQYAITKFTEEKHKQLPSNFRKLLLVHLKKLVAAEKLVKVKNSYKL 120

Query: 121 PSARSIQAKAAAAAAAPVTAKKPVSSKLKAASIKKAAVAKSKAKTSAKPKPKAVAKPKPK 180
           PSARSIQAKAAAAAAAPVTAKKPVSSKLKAASIKKAAVAKSKAKT+AKPKPKAVAKPKPK
Sbjct: 121 PSARSIQAKAAAAAAAPVTAKKPVSSKLKAASIKKAAVAKSKAKTAAKPKPKAVAKPKPK 180

Query: 181 TVAKSKTVAKPKTAAKTKAAEKVKKVAPKPKPAAAKAAKVAKTLSRTSPGKRAAPATKAK 240
           TVAKSKTVAKPKTAAKTKAAEKVKKVAPKPKPAA                       KA 
Sbjct: 181 TVAKSKTVAKPKTAAKTKAAEKVKKVAPKPKPAA-----------------------KAA 240

Query: 241 KVAAKKPKTVKSPARKVQARKVKK 264
           KVAAKKPKTVKSPARKVQARKVKK
Sbjct: 241 KVAAKKPKTVKSPARKVQARKVKK 241

[Close]

BLAST of Cucsat.G19538 vs. ExPASy TrEMBL
Match: A0A6J1G2W2 (histone H1-like OS=Cucurbita moschata OX=3662 GN=LOC111450301 PE=3 SV=1)

HSP 1 Score: 334 bits (857), Expect = 7.27e-113
Identity = 227/269 (84.39%), Postives = 237/269 (88.10%), Query Frame = 0


Query: 1   MSSAADSVIISDAPA--AAVAQPAENDSKAKKAAASKASKAKKPSGAKKARSSPTHPPFL 60
           MSSAAD V  SDAPA  AAVAQP ENDSK+KKAAASKASKAKKPSGAK+ RSSPTHPPF 
Sbjct: 1   MSSAADPVASSDAPATVAAVAQPVENDSKSKKAAASKASKAKKPSGAKRTRSSPTHPPFF 60

Query: 61  QMISEAIVSLKERTGSSQYAITKFTEEKHKQLPSNFRKLLLVHLKKLVAAEKLVKVKNSY 120
           +MISEAIVSLKERTGSSQYAITKF+EEKHK+LPSNFRKLLLVHLKKLVAA+KLVKVKNSY
Sbjct: 61  EMISEAIVSLKERTGSSQYAITKFSEEKHKKLPSNFRKLLLVHLKKLVAADKLVKVKNSY 120

Query: 121 KLPSARSIQAKAAAAAAAPVTAKKPVSSKLKAA-SIKKAAVAKSKAKTSAKPKPKAVAKP 180
           KLPSARS       AAAAPV AKKP SSKLKAA S+KKAAVAK KAKT+ KPKPKAVAKP
Sbjct: 121 KLPSARS------KAAAAPVVAKKPASSKLKAAVSVKKAAVAKPKAKTAVKPKPKAVAKP 180

Query: 181 KPKTVAKSKTVAKPKTAA--KTKAAEKVKKVAPKPKPAAAKAAKVAKTLSRTSPGKRAAP 240
           K  + AKSK VAKPK  A  K KAAEKVKKVAPKPKPAA K AKVAKTLSRTSPGK+AAP
Sbjct: 181 K--SAAKSKVVAKPKAVAPAKRKAAEKVKKVAPKPKPAA-KPAKVAKTLSRTSPGKKAAP 240

Query: 241 ATKAKKVAAKKPKTVKSPARKVQARKVKK 264
           A KAKKVAAKKPKTVKSPARKVQARKVKK
Sbjct: 241 AAKAKKVAAKKPKTVKSPARKVQARKVKK 260

[Close]

BLAST of Cucsat.G19538 vs. ExPASy TrEMBL
Match: A0A6J1KEC3 (histone H1-like OS=Cucurbita maxima OX=3661 GN=LOC111493576 PE=3 SV=1)

HSP 1 Score: 327 bits (837), Expect = 7.98e-110
Identity = 223/269 (82.90%), Postives = 231/269 (85.87%), Query Frame = 0


Query: 1   MSSAADSVIISDAPA--AAVAQPAENDSKAKKAAASKASKAKKPSGAKKARSSPTHPPFL 60
           MSSAAD V  SDAPA  A VA P ENDSK+KKAAASKASKAKKPSGAK+ RSSPTHPPF 
Sbjct: 1   MSSAADPVASSDAPATVAVVAPPVENDSKSKKAAASKASKAKKPSGAKRTRSSPTHPPFF 60

Query: 61  QMISEAIVSLKERTGSSQYAITKFTEEKHKQLPSNFRKLLLVHLKKLVAAEKLVKVKNSY 120
           +MISEAIVSLKERTGSSQYAITKF+EEKHKQLPSNFRKLLLVHLKKLVAA+KLVKVKNSY
Sbjct: 61  EMISEAIVSLKERTGSSQYAITKFSEEKHKQLPSNFRKLLLVHLKKLVAADKLVKVKNSY 120

Query: 121 KLPSARSIQAKAAAAAAAPVTAKKPVSSKLKAA-SIKKAAVAKSKAKTSAKPKPKAVAKP 180
           KLPSARS       AAAAPV AKKP SSKLKAA S+KKAAVAK KAKT+ KPKPK VAKP
Sbjct: 121 KLPSARS------KAAAAPVVAKKPASSKLKAAVSVKKAAVAKPKAKTAVKPKPKVVAKP 180

Query: 181 KPKTVAKSKTVAKPKTAA--KTKAAEKVKKVAPKPKPAAAKAAKVAKTLSRTSPGKRAAP 240
           K    AKSK V KPK  A  K KAAEKVKKVAPKPKPAA K AKVAKTLSR SPGK+AAP
Sbjct: 181 K--AAAKSKVVGKPKAVAPAKRKAAEKVKKVAPKPKPAA-KPAKVAKTLSRASPGKKAAP 240

Query: 241 ATKAKKVAAKKPKTVKSPARKVQARKVKK 264
           A KAKKVAAKKPKTVKSPARKVQARKVKK
Sbjct: 241 AAKAKKVAAKKPKTVKSPARKVQARKVKK 260

The following BLAST results are available for this feature:

BLAST of Cucsat.G19538 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P37218	3.5e-37	50.88	Histone H1 OS=Solanum lycopersicum OX=4081 PE=3 SV=1	[more]
Q9M5W4	8.6e-36	55.73	Histone H1 OS=Euphorbia esula OX=3993 PE=2 SV=1	[more]
P23444	3.4e-32	52.45	Histone H1 OS=Zea mays OX=4577 PE=2 SV=2	[more]
P26569	1.7e-31	50.72	Histone H1.2 OS=Arabidopsis thaliana OX=3702 GN=At2g30620 PE=1 SV=1	[more]
P08283	1.6e-29	49.61	Histone H1 OS=Pisum sativum OX=3888 PE=2 SV=1	[more]

BLAST of Cucsat.G19538 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004139246.1	9.14e-145	99.24	histone H1 [Cucumis sativus] >KAE8651556.1 hypothetical protein Csa_019256 [Cucu...	[more]
KAA0063593.1	3.31e-129	92.16	histone H1-like [Cucumis melo var. makuwa] >TYK18434.1 histone H1-like [Cucumis ...	[more]
XP_008456174.1	5.46e-128	91.79	PREDICTED: histone H1-like [Cucumis melo]	[more]
KAG6599320.1	5.25e-113	84.76	Histone H1.2, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022946127.1	1.50e-112	84.39	histone H1-like [Cucurbita moschata] >KAG7030316.1 Histone H1.2 [Cucurbita argyr...	[more]

BLAST of Cucsat.G19538 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D4H1	1.60e-129	92.16	Histone H1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold456G0016...	[more]
A0A1S3C278	2.64e-128	91.79	histone H1-like OS=Cucumis melo OX=3656 GN=LOC103496189 PE=3 SV=1	[more]
A0A0A0LLA4	2.66e-127	90.53	H15 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G010270 PE=3 SV...	[more]
A0A6J1G2W2	7.27e-113	84.39	histone H1-like OS=Cucurbita moschata OX=3662 GN=LOC111450301 PE=3 SV=1	[more]
A0A6J1KEC3	7.98e-110	82.90	histone H1-like OS=Cucurbita maxima OX=3661 GN=LOC111493576 PE=3 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005819	Linker histone H1/H5	PRINTS	PR00624	HISTONEH5	coord: 202..221 score: 32.78 coord: 67..84 score: 38.89 coord: 142..156 score: 47.41 coord: 40..61 score: 39.39 coord: 180..197 score: 32.72
IPR005818	Linker histone H1/H5, domain H15	SMART	SM00526	h15plus2	coord: 51..117 e-value: 4.7E-30 score: 115.8
IPR005818	Linker histone H1/H5, domain H15	PFAM	PF00538	Linker_histone	coord: 54..120 e-value: 3.5E-16 score: 59.3
IPR005818	Linker histone H1/H5, domain H15	PROSITE	PS51504	H15	coord: 53..122 score: 28.698616
IPR005818	Linker histone H1/H5, domain H15	CDD	cd00073	H15	coord: 51..125 e-value: 2.16961E-12 score: 59.5571
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 48..135 e-value: 2.0E-20 score: 74.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 165..185
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 16..58
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 238..264
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 157..264
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 33..47
None	No IPR available	PANTHER	PTHR11467	HISTONE H1	coord: 2..264
None	No IPR available	PANTHER	PTHR11467:SF128	SUBFAMILY NOT NAMED	coord: 2..264
IPR036390	Winged helix DNA-binding domain superfamily	SUPERFAMILY	46785	"Winged helix" DNA-binding domain	coord: 50..131

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsat.G19538.T1	Cucsat.G19538.T1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006334	nucleosome assembly
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0008168	methyltransferase activity