Cucsat.G1900 (gene) Cucumber (B10) v3

Overview


Name	Cucsat.G1900
Type	gene
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	60S ribosomal protein L8
Location	ctg1002: 3950775 .. 3952958 (-)
RNA-Seq Expression	Cucsat.G1900
Synteny	Cucsat.G1900

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CCTTGTTCTGGATAAATGGGCCTGGGATTCAACATTATAGCGGGCTAGTGGCCCAGACCTGATGTTGCTAAATTTTGGAGTCCATTATGTCTAAAATGAAGACTCAATTGCTCGAACTGTCCGCCTGTATTGCAGATTGTGATGGCTCTTTTGCAGACAACAATCTGCCTTCGTATTTCCACCATCATCTTCTTCCTCGTCTTTCTCCTTTCCGAGAAATCTCATTGTATCAGAATTCCGAATCGAATTGTTGAACCTATTAAGACTACTTCAAGCCATCAGTCCTTGAAAACCGCAGTTTTTGCTCTTGGAAGTTTCTGGAGATCCGAAGCTGTCTTCGGTTGCTTGGATGGAGTTGTCCGGACCACCGTCGGCTATGCCGGTGGTACTAAACACAATCCTGAGTACCGTAGCTTGGGGGATCACGCCGAGTCTGTTCGGGTTTGTACTCTTACCTTCTCTTCTCTTCTCTTCTCCTTTTCATTTCTTATTTTTTTGATTGCTTAATTTTCACTTTTCATTTTGTGAATTTTCTGTACTCTACATTTCGGATGGTGTTGCTGATGTCATTATTTCGGTAGATCCTGTTTGTACGTTTGGTCGTATTGTTTGTTTACCTTTTTGATATTGTTTTGCTTTCTTGATCGGATTTATTGTCTTGGAAATCTCCTTGTGCGAGGCAGTGATGAGGTTTGAATGTCCTGACATTTGGTGGTATGTAGAATTTGTTTGTCGCAGATCTCTGATGTGAAAATGGACTGAATCCAGTTTTCTTTTTTGTCGACGACTTGTCAGTGCTTGGGATAGGATTTGTTAATAACTTCGGTATAAATCGTCTTGTCTATTTATGCACCTACGACCAACCAATCAAATGAGGCATTCATTTACGTGCATTTAAGAAATTGTTAGATTGAAGTTGCATGTTCTGTAAAATTTTGAATTCAACGGTGCCTTCACTTAATCCTAGATAAGTTTGTTGTATTCTATTGTGGTGACGAAATTACTTGAGGAACCGCCCTTCATGATAAATGCTTCAATCTGTAGATATCATTGGTGGACCATGGAGTATTTCAAGTTACAAAATTTGAATCATTTGTTGATATATATTGGTTCTGAAAAAGTTTCGTTTTGGGTTTCCTTACATTACATCAATGTTTTGATGTGATTGAGTTTTTTATCATATGCTTTGTAATTCTTTGCAGGTTGAATATGATCCTAAGCTTATTAGTTTTAGGCAACTGTTAGAGGTTTTTTGGTCCAGTCATGATTCGAGGCAAGTGTTTGGGCAAGGTCCTGATGTGGGCAACCAGTATAGGTATGCTATTTATAAATTCTAGCTCATAATTTAGTCGAAATCAACCTTTGATAATGGTGTTATGTATTCTTTTGTATCAGATCTATCATTTTTACTATTAATGATACTGAGGAATCTAGACTGGCTACTGTTAGCAAAGAAAAAGAGCAACTGAAGTCAAGAGGAAGTGCTGTAACTACACAAATTCAGGAACTTGGAGCATTTTATCCTGCTGAGCCTGAACATCAGGTTAATACCATTGATTAATGTAATCCTTTGAGGCAATTTTGTGGAGAAATTTCAGATTTTAAGATATCCTGGTTCTTGACATGCAACTCACCTAGAACATTACAAGTTAAGATAGATTGAGACATCTTTGGTCTTTGCCTACTTTGTAAGTTGCTACCCTCTGCCCCACTTTTCCGACTTGAAGCTGAAGTAAGCAAGGTTGTGATGTCTGTAGTCTTTTTGGTACTTTACGAATTGCAACCTCCTAAACCCCTCTCCCATTTGAAAGATGAAGTGCATCTCATTTCTAGAAATGGATGATCCATTTCGAGAGACTTTGTGGTCAAAAGAAGAAAGTTTCAAAATATAACATTCAGGTCTAAAAGTACAGATAGAGCATAGGAAAAAAATGCAAATGTAGCAAAATTTAGATCCAACTCTTATAGCTACAATCTATCGATAATGATCCATCTTGCTAACAAGAGTCTAACACTTACAGGAACCTAATAAGTGATAGAAACTATCACTTGTAGATTTTGCTTTATTTGCAATTCTTTTCAATATTGTTGCGCACTTAATTATTAGTCCTAAAAGTTGCGTCTTTGCAATTACCCTAAAGAAGAATGGACTTGCTGACATATGTATATCTCGCTCACACTGATCTACATATTTACGTGCAGAAATTTGAGCTGAAGAGGAATCCATTTTTTATTCAATTAATGGGTAACTTGCCAGAAGAGGAGCTTGAGATGTCCACTTTGGCAGCAAATATGAATGGGTACGCCGCAGAGCTATGCCCTCCAAAGACTCAGAAGCAAATCGATGCCAAGATCAACGATATTATCAAGAAAGGATGGCCTATTCTGAGAGAAAAATAACTTCATGTTCTTGCAAACTTCTAGCTTGGTAGCAAACCGATGCTGTTGCATCAGTGTTGGTCTTCTTGTTAGATTGCAGAAGCCCAAATTGTTTGATCATCCATTGAATTTACTCTCTCAGCTTCAATTTTTTTGTAGCTACAAATTTCATTTTTTTGGTTCAAACCCATTATTATGTAGATTGATTACTCCTTACCAATTGGGAATATTTCATTCTTTAAACATTTCGTTTTCCCCGTCTGTCATCAAGAAACTGAGCTATGTTGTACCTCAGTTTCAGATTTAGGGTAACAGAGTATTGAAGATTCAGGCTCACTACCTAAATATACTTATATATATATATATAATACGTTAAAGAGTGAAGAGTGAAGAGAACCAATGAGCTGTCTTGAGTCGTGGTTTTACATTTTTAATTATTATCTTAAACCTTTTATTATTG

Coding sequence (CDS)

ATGGCTCTTTTGCAGACAACAATCTGCCTTCGTATTTCCACCATCATCTTCTTCCTCGTCTTTCTCCTTTCCGAGAAATCTCATTGTATCAGAATTCCGAATCGAATTGTTGAACCTATTAAGACTACTTCAAGCCATCAGTCCTTGAAAACCGCAGTTTTTGCTCTTGGAAGTTTCTGGAGATCCGAAGCTGTCTTCGGTTGCTTGGATGGAGTTGTCCGGACCACCGTCGGCTATGCCGGTGGTACTAAACACAATCCTGAGTACCGTAGCTTGGGGGATCACGCCGAGTCTGTTCGGGTTGAATATGATCCTAAGCTTATTAGTTTTAGGCAACTGTTAGAGGTTTTTTGGTCCAGTCATGATTCGAGGCAAGTGTTTGGGCAAGGTCCTGATGTGGGCAACCAGTATAGATCTATCATTTTTACTATTAATGATACTGAGGAATCTAGACTGGCTACTGTTAGCAAAGAAAAAGAGCAACTGAAGTCAAGAGGAAGTGCTGTAACTACACAAATTCAGGAACTTGGAGCATTTTATCCTGCTGAGCCTGAACATCAGAAATTTGAGCTGAAGAGGAATCCATTTTTTATTCAATTAATGGGTAACTTGCCAGAAGAGGAGCTTGAGATGTCCACTTTGGCAGCAAATATGAATGGGTACGCCGCAGAGCTATGCCCTCCAAAGACTCAGAAGCAAATCGATGCCAAGATCAACGATATTATCAAGAAAGGATGGCCTATTCTGAGAGAAAAATAA

Protein sequence

MALLQTTICLRISTIIFFLVFLLSEKSHCIRIPNRIVEPIKTTSSHQSLKTAVFALGSFWRSEAVFGCLDGVVRTTVGYAGGTKHNPEYRSLGDHAESVRVEYDPKLISFRQLLEVFWSSHDSRQVFGQGPDVGNQYRSIIFTINDTEESRLATVSKEKEQLKSRGSAVTTQIQELGAFYPAEPEHQKFELKRNPFFIQLMGNLPEEELEMSTLAANMNGYAAELCPPKTQKQIDAKINDIIKKGWPILREK

Homology

[Close]

BLAST of Cucsat.G1900 vs. ExPASy Swiss-Prot
Match: Q9SL43 (Peptide methionine sulfoxide reductase A5 OS=Arabidopsis thaliana OX=3702 GN=MSRA5 PE=2 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 1.4e-45
Identity = 88/126 (69.84%), Postives = 105/126 (83.33%), Query Frame = 0


Query: 17  FFLVFLLSEKSHCIRIPNRIVEPIKTTSSHQSLKTAVFALGSFWRSEAVFGCLDGVVRTT 76
           FFL   L +K+  IRI N+I + +   S  + LK+AVFALGSFWRSEA FGC++GVVRT+
Sbjct: 21  FFLCVSLLDKTVSIRISNQISDTV-VDSPDRPLKSAVFALGSFWRSEAAFGCINGVVRTS 80

Query: 77  VGYAGGTKHNPEYRSLGDHAESVRVEYDPKLISFRQLLEVFWSSHDSRQVFGQGPDVGNQ 136
            GYAGGTK NPEYR+LGDHAESV+VEYDP++I +RQLL+VFWSSHDSRQVFGQGPDVGNQ
Sbjct: 81  AGYAGGTKTNPEYRNLGDHAESVQVEYDPRIIGYRQLLDVFWSSHDSRQVFGQGPDVGNQ 140

Query: 137 YRYAIY 143
           YR  I+
Sbjct: 141 YRSCIF 145

[Close]

BLAST of Cucsat.G1900 vs. ExPASy Swiss-Prot
Match: Q5VPG8 (Peptide methionine sulfoxide reductase A5 OS=Oryza sativa subsp. japonica OX=39947 GN=MSRA5 PE=2 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 2.2e-38
Identity = 81/137 (59.12%), Postives = 104/137 (75.91%), Query Frame = 0


Query: 12  ISTIIFFLVFLLSEKSHCIRIP-----NRIVEPI-KTTSSHQSLKTAVFALGSFWRSEAV 71
           I+ +++ L+ L+   S   R+P     NR  EP     ++  + +TAVFALGSFWRSEA 
Sbjct: 10  IAGVVWVLLLLVGVASGA-RLPGGSGGNRGREPRGGAAAAAVATETAVFALGSFWRSEAA 69

Query: 72  FGCLDGVVRTTVGYAGGTKHNPEYRSLGDHAESVRVEYDPKLISFRQLLEVFWSSHDSRQ 131
           FGCL GV+RT+VGYAGG+K  PEYR+LGDHAE V+VEYDP+LI +++LLEVFW+SHD R+
Sbjct: 70  FGCLPGVIRTSVGYAGGSKARPEYRNLGDHAECVKVEYDPRLIQYKKLLEVFWASHDPRE 129

Query: 132 VFGQGPDVGNQYRYAIY 143
           VFGQGPDVGNQYR  I+
Sbjct: 130 VFGQGPDVGNQYRSIIF 145

[Close]

BLAST of Cucsat.G1900 vs. ExPASy Swiss-Prot
Match: Q2RRT3 (Peptide methionine sulfoxide reductase MsrA OS=Rhodospirillum rubrum (strain ATCC 11170 / ATH 1.1.1 / DSM 467 / LMG 4362 / NCIMB 8255 / S1) OX=269796 GN=msrA PE=3 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 1.3e-22
Identity = 52/98 (53.06%), Postives = 66/98 (67.35%), Query Frame = 0


Query: 49  LKTAVFALGSFWRSEAVFGCLDGVVRTTVGYAGGTKHNPEYRSL--GD--HAESVRVEYD 108
           + TA FA G FW  E  F  + GV  TTVGY GG    P YR +  GD  HAE+VRV+YD
Sbjct: 1   MATATFAAGCFWGVEETFRKIPGVTGTTVGYTGGHFKEPTYRQVCAGDTGHAEAVRVDYD 60

Query: 109 PKLISFRQLLEVFWSSHDSRQVFGQGPDVGNQYRYAIY 143
           P  +++ QLL+VFW++HD  QV  QGPD+G+QYR AI+
Sbjct: 61  PDKVTYEQLLDVFWAAHDPTQVDRQGPDIGDQYRSAIF 98

[Close]

BLAST of Cucsat.G1900 vs. ExPASy Swiss-Prot
Match: A7MM56 (Peptide methionine sulfoxide reductase MsrA OS=Cronobacter sakazakii (strain ATCC BAA-894) OX=290339 GN=msrA PE=3 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 1.7e-22
Identity = 52/104 (50.00%), Postives = 65/104 (62.50%), Query Frame = 0


Query: 43  TSSHQSLKTAVFALGSFWRSEAVFGCLDGVVRTTVGYAGGTKHNPEYRSL----GDHAES 102
           T+  + ++ A+FA+G FW  E +F  L GV  T  GY GG   NP YR +      HAE+
Sbjct: 37  TNVPEGMEVALFAMGCFWGVERLFWALPGVYSTAAGYTGGYTPNPTYREVCSGQTGHAEA 96

Query: 103 VRVEYDPKLISFRQLLEVFWSSHDSRQVFGQGPDVGNQYRYAIY 143
           VRV YDP +IS+ QLL+VFW +HD  Q   QG DVG QYR AIY
Sbjct: 97  VRVVYDPNVISYEQLLQVFWENHDPAQGMRQGNDVGTQYRSAIY 140

[Close]

BLAST of Cucsat.G1900 vs. ExPASy Swiss-Prot
Match: B2TZL3 (Peptide methionine sulfoxide reductase MsrA OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) OX=344609 GN=msrA PE=3 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 8.5e-22
Identity = 52/104 (50.00%), Postives = 66/104 (63.46%), Query Frame = 0


Query: 43  TSSHQSLKTAVFALGSFWRSEAVFGCLDGVVRTTVGYAGGTKHNPEYRSL--GD--HAES 102
           T+    ++ A+FA+G FW  E++F  L GV  T  GY GG   NP YR +  GD  HAE+
Sbjct: 37  TNVPDGMEIAIFAMGCFWGVESLFWQLPGVYSTAAGYTGGYTPNPTYREVCSGDTGHAEA 96

Query: 103 VRVEYDPKLISFRQLLEVFWSSHDSRQVFGQGPDVGNQYRYAIY 143
           VR+ YDP +IS+ QLL+VFW +HD  Q   QG D G QYR AIY
Sbjct: 97  VRIVYDPSVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIY 140

[Close]

BLAST of Cucsat.G1900 vs. NCBI nr
Match: XP_004134872.1 (peptide methionine sulfoxide reductase A5 [Cucumis sativus] >KGN48901.1 hypothetical protein Csa_003888 [Cucumis sativus])

HSP 1 Score: 277 bits (708), Expect = 4.57e-92
Identity = 139/142 (97.89%), Postives = 140/142 (98.59%), Query Frame = 0


Query: 1   MALLQTTICLRISTIIFFLVFLLSEKSHCIRIPNRIVEPIKTTSSHQSLKTAVFALGSFW 60
           MALLQTTICLRISTIIFFLVFLLSEKSHCIRIPNRIVEPIKTTSSHQSLKTAVFALGSFW
Sbjct: 1   MALLQTTICLRISTIIFFLVFLLSEKSHCIRIPNRIVEPIKTTSSHQSLKTAVFALGSFW 60

Query: 61  RSEAVFGCLDGVVRTTVGYAGGTKHNPEYRSLGDHAESVRVEYDPKLISFRQLLEVFWSS 120
           RSEAVFGCLDGVVRTTVGYAGGTKHNPEYRSLGDHAESVRVEYDPKLISFRQLLEVFWSS
Sbjct: 61  RSEAVFGCLDGVVRTTVGYAGGTKHNPEYRSLGDHAESVRVEYDPKLISFRQLLEVFWSS 120

Query: 121 HDSRQVFGQGPDVGNQYRYAIY 142
           HDSRQVFGQGPDVGNQYR  I+
Sbjct: 121 HDSRQVFGQGPDVGNQYRSIIF 142

[Close]

BLAST of Cucsat.G1900 vs. NCBI nr
Match: XP_008440803.1 (PREDICTED: peptide methionine sulfoxide reductase A5 [Cucumis melo] >KAA0025687.1 peptide methionine sulfoxide reductase A5 [Cucumis melo var. makuwa] >TYK12562.1 peptide methionine sulfoxide reductase A5 [Cucumis melo var. makuwa])

HSP 1 Score: 275 bits (704), Expect = 1.86e-91
Identity = 136/142 (95.77%), Postives = 140/142 (98.59%), Query Frame = 0


Query: 1   MALLQTTICLRISTIIFFLVFLLSEKSHCIRIPNRIVEPIKTTSSHQSLKTAVFALGSFW 60
           MALLQTTICLRISTIIFFL+FLLSEKSHCIR+PNRIVEP+KTTSSHQSLKTAVFALGSFW
Sbjct: 1   MALLQTTICLRISTIIFFLIFLLSEKSHCIRVPNRIVEPLKTTSSHQSLKTAVFALGSFW 60

Query: 61  RSEAVFGCLDGVVRTTVGYAGGTKHNPEYRSLGDHAESVRVEYDPKLISFRQLLEVFWSS 120
           RSEAVFGCLDGVVRTTVGYAGGTKHNPEYRSLGDHAESVRVEYDPKLISFRQLLEVFWSS
Sbjct: 61  RSEAVFGCLDGVVRTTVGYAGGTKHNPEYRSLGDHAESVRVEYDPKLISFRQLLEVFWSS 120

Query: 121 HDSRQVFGQGPDVGNQYRYAIY 142
           HDSRQVFGQGPDVGNQYR  I+
Sbjct: 121 HDSRQVFGQGPDVGNQYRSIIF 142

[Close]

BLAST of Cucsat.G1900 vs. NCBI nr
Match: XP_038881316.1 (peptide methionine sulfoxide reductase A5 [Benincasa hispida])

HSP 1 Score: 255 bits (652), Expect = 1.51e-83
Identity = 127/142 (89.44%), Postives = 135/142 (95.07%), Query Frame = 0


Query: 1   MALLQTTICLRISTIIFFLVFLLSEKSHCIRIPNRIVEPIKTTSSHQSLKTAVFALGSFW 60
           MA LQTTICLRI+TIIFFL+FLLS KS+CIRIPNRI EPIK +SSHQSLKTAVFALGSFW
Sbjct: 1   MAHLQTTICLRIATIIFFLIFLLSGKSYCIRIPNRIAEPIKISSSHQSLKTAVFALGSFW 60

Query: 61  RSEAVFGCLDGVVRTTVGYAGGTKHNPEYRSLGDHAESVRVEYDPKLISFRQLLEVFWSS 120
           RSEAVFGCLDGVVRTTVGYAGGTK NPEYRSLGDHAESV+V+YDPKLISF+QLLEVFWSS
Sbjct: 61  RSEAVFGCLDGVVRTTVGYAGGTKQNPEYRSLGDHAESVQVDYDPKLISFKQLLEVFWSS 120

Query: 121 HDSRQVFGQGPDVGNQYRYAIY 142
           HDSRQVFGQGPDVGNQYR  I+
Sbjct: 121 HDSRQVFGQGPDVGNQYRSIIF 142

[Close]

BLAST of Cucsat.G1900 vs. NCBI nr
Match: KAG7034101.1 (Peptide methionine sulfoxide reductase A5, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 241 bits (614), Expect = 5.24e-79
Identity = 122/141 (86.52%), Postives = 126/141 (89.36%), Query Frame = 0


Query: 1   MALLQTTICLRISTIIFFLVFLLSEKSHCIRIPNRIVEPIKTTSSHQSLKTAVFALGSFW 60
           MALLQTTIC+RI TI+FFLVFLLS KS CIR PNRI +  K   SH SLKTAVFALG FW
Sbjct: 22  MALLQTTICVRIFTILFFLVFLLSGKSCCIRTPNRIADSNKIPPSHHSLKTAVFALGCFW 81

Query: 61  RSEAVFGCLDGVVRTTVGYAGGTKHNPEYRSLGDHAESVRVEYDPKLISFRQLLEVFWSS 120
           RSEAVFGCLDGVVRTTVGYAGGTK NPEYRSLGDHAESVRVEYDPKL SFRQLLEVFWSS
Sbjct: 82  RSEAVFGCLDGVVRTTVGYAGGTKLNPEYRSLGDHAESVRVEYDPKLTSFRQLLEVFWSS 141

Query: 121 HDSRQVFGQGPDVGNQYRYAI 141
           HDSRQVFGQGPDVGNQYRY +
Sbjct: 142 HDSRQVFGQGPDVGNQYRYIL 162

[Close]

BLAST of Cucsat.G1900 vs. NCBI nr
Match: XP_023544873.1 (peptide methionine sulfoxide reductase A5-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 242 bits (618), Expect = 4.21e-78
Identity = 124/142 (87.32%), Postives = 127/142 (89.44%), Query Frame = 0


Query: 1   MALLQTTICLRISTIIFFLVFLLSEKSHCIRIPNRIVEPIKTTSSHQSLKTAVFALGSFW 60
           MALLQTTICLRI TI+FFLVFLLS KS CIR PNRI +  K  SSH SLKTAVFALG FW
Sbjct: 22  MALLQTTICLRIFTIVFFLVFLLSGKSCCIRTPNRIADANKIPSSHHSLKTAVFALGCFW 81

Query: 61  RSEAVFGCLDGVVRTTVGYAGGTKHNPEYRSLGDHAESVRVEYDPKLISFRQLLEVFWSS 120
           RSEAVFGCLDGVVRTTVGYAGGTK NPEYRSLGDHAESVRVEYDPKL SFRQLLEVFWSS
Sbjct: 82  RSEAVFGCLDGVVRTTVGYAGGTKLNPEYRSLGDHAESVRVEYDPKLTSFRQLLEVFWSS 141

Query: 121 HDSRQVFGQGPDVGNQYRYAIY 142
           HDSRQVFGQGPDVGNQYR  I+
Sbjct: 142 HDSRQVFGQGPDVGNQYRSIIF 163

[Close]

BLAST of Cucsat.G1900 vs. ExPASy TrEMBL
Match: A0A0A0KMD5 (Protein-methionine-S-oxide reductase OS=Cucumis sativus OX=3659 GN=Csa_6G505300 PE=3 SV=1)

HSP 1 Score: 277 bits (708), Expect = 2.21e-92
Identity = 139/142 (97.89%), Postives = 140/142 (98.59%), Query Frame = 0


Query: 1   MALLQTTICLRISTIIFFLVFLLSEKSHCIRIPNRIVEPIKTTSSHQSLKTAVFALGSFW 60
           MALLQTTICLRISTIIFFLVFLLSEKSHCIRIPNRIVEPIKTTSSHQSLKTAVFALGSFW
Sbjct: 1   MALLQTTICLRISTIIFFLVFLLSEKSHCIRIPNRIVEPIKTTSSHQSLKTAVFALGSFW 60

Query: 61  RSEAVFGCLDGVVRTTVGYAGGTKHNPEYRSLGDHAESVRVEYDPKLISFRQLLEVFWSS 120
           RSEAVFGCLDGVVRTTVGYAGGTKHNPEYRSLGDHAESVRVEYDPKLISFRQLLEVFWSS
Sbjct: 61  RSEAVFGCLDGVVRTTVGYAGGTKHNPEYRSLGDHAESVRVEYDPKLISFRQLLEVFWSS 120

Query: 121 HDSRQVFGQGPDVGNQYRYAIY 142
           HDSRQVFGQGPDVGNQYR  I+
Sbjct: 121 HDSRQVFGQGPDVGNQYRSIIF 142

[Close]

BLAST of Cucsat.G1900 vs. ExPASy TrEMBL
Match: A0A5D3CMK1 (Protein-methionine-S-oxide reductase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G001440 PE=3 SV=1)

HSP 1 Score: 275 bits (704), Expect = 8.99e-92
Identity = 136/142 (95.77%), Postives = 140/142 (98.59%), Query Frame = 0


Query: 1   MALLQTTICLRISTIIFFLVFLLSEKSHCIRIPNRIVEPIKTTSSHQSLKTAVFALGSFW 60
           MALLQTTICLRISTIIFFL+FLLSEKSHCIR+PNRIVEP+KTTSSHQSLKTAVFALGSFW
Sbjct: 1   MALLQTTICLRISTIIFFLIFLLSEKSHCIRVPNRIVEPLKTTSSHQSLKTAVFALGSFW 60

Query: 61  RSEAVFGCLDGVVRTTVGYAGGTKHNPEYRSLGDHAESVRVEYDPKLISFRQLLEVFWSS 120
           RSEAVFGCLDGVVRTTVGYAGGTKHNPEYRSLGDHAESVRVEYDPKLISFRQLLEVFWSS
Sbjct: 61  RSEAVFGCLDGVVRTTVGYAGGTKHNPEYRSLGDHAESVRVEYDPKLISFRQLLEVFWSS 120

Query: 121 HDSRQVFGQGPDVGNQYRYAIY 142
           HDSRQVFGQGPDVGNQYR  I+
Sbjct: 121 HDSRQVFGQGPDVGNQYRSIIF 142

[Close]

BLAST of Cucsat.G1900 vs. ExPASy TrEMBL
Match: A0A1S3B2Q7 (Protein-methionine-S-oxide reductase OS=Cucumis melo OX=3656 GN=LOC103485114 PE=3 SV=1)

HSP 1 Score: 275 bits (704), Expect = 8.99e-92
Identity = 136/142 (95.77%), Postives = 140/142 (98.59%), Query Frame = 0


Query: 1   MALLQTTICLRISTIIFFLVFLLSEKSHCIRIPNRIVEPIKTTSSHQSLKTAVFALGSFW 60
           MALLQTTICLRISTIIFFL+FLLSEKSHCIR+PNRIVEP+KTTSSHQSLKTAVFALGSFW
Sbjct: 1   MALLQTTICLRISTIIFFLIFLLSEKSHCIRVPNRIVEPLKTTSSHQSLKTAVFALGSFW 60

Query: 61  RSEAVFGCLDGVVRTTVGYAGGTKHNPEYRSLGDHAESVRVEYDPKLISFRQLLEVFWSS 120
           RSEAVFGCLDGVVRTTVGYAGGTKHNPEYRSLGDHAESVRVEYDPKLISFRQLLEVFWSS
Sbjct: 61  RSEAVFGCLDGVVRTTVGYAGGTKHNPEYRSLGDHAESVRVEYDPKLISFRQLLEVFWSS 120

Query: 121 HDSRQVFGQGPDVGNQYRYAIY 142
           HDSRQVFGQGPDVGNQYR  I+
Sbjct: 121 HDSRQVFGQGPDVGNQYRSIIF 142

[Close]

BLAST of Cucsat.G1900 vs. ExPASy TrEMBL
Match: A0A6J1IPP3 (Protein-methionine-S-oxide reductase OS=Cucurbita maxima OX=3661 GN=LOC111478806 PE=3 SV=1)

HSP 1 Score: 240 bits (612), Expect = 8.48e-78
Identity = 123/142 (86.62%), Postives = 126/142 (88.73%), Query Frame = 0


Query: 1   MALLQTTICLRISTIIFFLVFLLSEKSHCIRIPNRIVEPIKTTSSHQSLKTAVFALGSFW 60
           MALLQTTICLRI TI+FFL FLLS KS CIR PNRI +  K  SSH SLKTAVFALG FW
Sbjct: 1   MALLQTTICLRIFTILFFLFFLLSGKSCCIRTPNRIADSNKIPSSHHSLKTAVFALGCFW 60

Query: 61  RSEAVFGCLDGVVRTTVGYAGGTKHNPEYRSLGDHAESVRVEYDPKLISFRQLLEVFWSS 120
           RSEAVFGCLDGVVRTTVGYAGGTK NPEYRSLGDHAESVRVEYDPKL SFRQLLEVFWSS
Sbjct: 61  RSEAVFGCLDGVVRTTVGYAGGTKLNPEYRSLGDHAESVRVEYDPKLTSFRQLLEVFWSS 120

Query: 121 HDSRQVFGQGPDVGNQYRYAIY 142
           HDSRQVFGQGPDVGNQYR  I+
Sbjct: 121 HDSRQVFGQGPDVGNQYRSIIF 142

[Close]

BLAST of Cucsat.G1900 vs. ExPASy TrEMBL
Match: A0A6J1GGV0 (Protein-methionine-S-oxide reductase OS=Cucurbita moschata OX=3662 GN=LOC111453785 PE=3 SV=1)

HSP 1 Score: 237 bits (604), Expect = 2.72e-76
Identity = 122/142 (85.92%), Postives = 126/142 (88.73%), Query Frame = 0


Query: 1   MALLQTTICLRISTIIFFLVFLLSEKSHCIRIPNRIVEPIKTTSSHQSLKTAVFALGSFW 60
           MALLQTTIC+RI TI+FFLVFLLS KS CIR  NRI +  K  SSH SLKTAVFALG FW
Sbjct: 22  MALLQTTICVRIFTILFFLVFLLSGKSCCIRTLNRIADSNKIPSSHHSLKTAVFALGCFW 81

Query: 61  RSEAVFGCLDGVVRTTVGYAGGTKHNPEYRSLGDHAESVRVEYDPKLISFRQLLEVFWSS 120
           RSEAVFGCLDGVVRTTVGYAGGTK NPEYRSLGDHAESVRVEYDPKL SFRQLLEVFWSS
Sbjct: 82  RSEAVFGCLDGVVRTTVGYAGGTKLNPEYRSLGDHAESVRVEYDPKLTSFRQLLEVFWSS 141

Query: 121 HDSRQVFGQGPDVGNQYRYAIY 142
           HDSRQVFGQGPDVGNQYR  I+
Sbjct: 142 HDSRQVFGQGPDVGNQYRSIIF 163

[Close]

BLAST of Cucsat.G1900 vs. TAIR 10
Match: AT2G18030.2 (Peptide methionine sulfoxide reductase family protein )

HSP 1 Score: 183.7 bits (465), Expect = 1.0e-46
Identity = 88/126 (69.84%), Postives = 105/126 (83.33%), Query Frame = 0


Query: 17  FFLVFLLSEKSHCIRIPNRIVEPIKTTSSHQSLKTAVFALGSFWRSEAVFGCLDGVVRTT 76
           FFL   L +K+  IRI N+I + +   S  + LK+AVFALGSFWRSEA FGC++GVVRT+
Sbjct: 21  FFLCVSLLDKTVSIRISNQISDTV-VDSPDRPLKSAVFALGSFWRSEAAFGCINGVVRTS 80

Query: 77  VGYAGGTKHNPEYRSLGDHAESVRVEYDPKLISFRQLLEVFWSSHDSRQVFGQGPDVGNQ 136
            GYAGGTK NPEYR+LGDHAESV+VEYDP++I +RQLL+VFWSSHDSRQVFGQGPDVGNQ
Sbjct: 81  AGYAGGTKTNPEYRNLGDHAESVQVEYDPRIIGYRQLLDVFWSSHDSRQVFGQGPDVGNQ 140

Query: 137 YRYAIY 143
           YR  I+
Sbjct: 141 YRSCIF 145

[Close]

BLAST of Cucsat.G1900 vs. TAIR 10
Match: AT2G18030.1 (Peptide methionine sulfoxide reductase family protein )

HSP 1 Score: 183.7 bits (465), Expect = 1.0e-46
Identity = 88/126 (69.84%), Postives = 105/126 (83.33%), Query Frame = 0


Query: 17  FFLVFLLSEKSHCIRIPNRIVEPIKTTSSHQSLKTAVFALGSFWRSEAVFGCLDGVVRTT 76
           FFL   L +K+  IRI N+I + +   S  + LK+AVFALGSFWRSEA FGC++GVVRT+
Sbjct: 21  FFLCVSLLDKTVSIRISNQISDTV-VDSPDRPLKSAVFALGSFWRSEAAFGCINGVVRTS 80

Query: 77  VGYAGGTKHNPEYRSLGDHAESVRVEYDPKLISFRQLLEVFWSSHDSRQVFGQGPDVGNQ 136
            GYAGGTK NPEYR+LGDHAESV+VEYDP++I +RQLL+VFWSSHDSRQVFGQGPDVGNQ
Sbjct: 81  AGYAGGTKTNPEYRNLGDHAESVQVEYDPRIIGYRQLLDVFWSSHDSRQVFGQGPDVGNQ 140

Query: 137 YRYAIY 143
           YR  I+
Sbjct: 141 YRSCIF 145

[Close]

BLAST of Cucsat.G1900 vs. TAIR 10
Match: AT5G61640.1 (peptidemethionine sulfoxide reductase 1 )

HSP 1 Score: 92.8 bits (229), Expect = 2.4e-19
Identity = 46/114 (40.35%), Postives = 64/114 (56.14%), Query Frame = 0


Query: 33  PNRIVEPIKTTSSHQSLKTAVFALGSFWRSEAVFGCLDGVVRTTVGYAGGTKHNPEYRSL 92
           P+ I + I   +     +   F  G FW  E  +  + GV +T VGY+ G  H+P Y+ +
Sbjct: 19  PSPIAQVIDDEAPAPGNQFTQFGAGCFWSVELAYQRVPGVTQTEVGYSQGITHDPSYKDV 78

Query: 93  ----GDHAESVRVEYDPKLISFRQLLEVFWSSHDSRQVFGQGPDVGNQYRYAIY 143
                +HAE VRV+YDPK  S++ LL++FWS HD   +  QG DVG QYR  IY
Sbjct: 79  CSGTTNHAEIVRVQYDPKECSYQSLLDLFWSKHDPTTLNRQGNDVGTQYRSGIY 132

[Close]

BLAST of Cucsat.G1900 vs. TAIR 10
Match: AT4G25130.1 (peptide met sulfoxide reductase 4 )

HSP 1 Score: 90.9 bits (224), Expect = 9.1e-19
Identity = 45/97 (46.39%), Postives = 55/97 (56.70%), Query Frame = 0


Query: 52  AVFALGSFWRSEAVFGCLDGVVRTTVGYAGGTKHNPEYRSL----GDHAESVRVEYDPKL 111
           A F  G FW  E  +  + GV +T VGY+ G  HNP Y  +      H E VRV+YDPK 
Sbjct: 94  AQFGAGCFWGVELAYQRVPGVTKTEVGYSHGIVHNPSYEDVCTGTTGHNEVVRVQYDPKE 153

Query: 112 ISFRQLLEVFWSSHDSRQVFGQGPDVGNQYRYAIYKF 145
            SF  LL+VFW+ HD   +  QG DVG QYR  IY +
Sbjct: 154 CSFESLLDVFWNRHDPTTLNRQGGDVGTQYRSGIYYY 190

[Close]

BLAST of Cucsat.G1900 vs. TAIR 10
Match: AT5G07460.1 (peptidemethionine sulfoxide reductase 2 )

HSP 1 Score: 85.1 bits (209), Expect = 5.0e-17
Identity = 43/95 (45.26%), Postives = 54/95 (56.84%), Query Frame = 0


Query: 52  AVFALGSFWRSEAVFGCLDGVVRTTVGYAGGTKHNPEYRSL----GDHAESVRVEYDPKL 111
           A FA G FW  E  F  + GV  T VGY  G  HNP Y  +     +HAE VRV+YDPK 
Sbjct: 54  AEFAAGCFWGVELAFQRIPGVTVTEVGYTHGISHNPSYEDVCTNTTNHAEVVRVQYDPKE 113

Query: 112 ISFRQLLEVFWSSHDSRQVFGQGPDVGNQYRYAIY 143
            ++  LL++FWS H+   +  QG  +G QYR  IY
Sbjct: 114 CTYETLLDLFWSRHNPTTLNRQGELLGAQYRSGIY 148

The following BLAST results are available for this feature:

BLAST of Cucsat.G1900 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SL43	1.4e-45	69.84	Peptide methionine sulfoxide reductase A5 OS=Arabidopsis thaliana OX=3702 GN=MSR...	[more]
Q5VPG8	2.2e-38	59.12	Peptide methionine sulfoxide reductase A5 OS=Oryza sativa subsp. japonica OX=399...	[more]
Q2RRT3	1.3e-22	53.06	Peptide methionine sulfoxide reductase MsrA OS=Rhodospirillum rubrum (strain ATC...	[more]
A7MM56	1.7e-22	50.00	Peptide methionine sulfoxide reductase MsrA OS=Cronobacter sakazakii (strain ATC...	[more]
B2TZL3	8.5e-22	50.00	Peptide methionine sulfoxide reductase MsrA OS=Shigella boydii serotype 18 (stra...	[more]

BLAST of Cucsat.G1900 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004134872.1	4.57e-92	97.89	peptide methionine sulfoxide reductase A5 [Cucumis sativus] >KGN48901.1 hypothet...	[more]
XP_008440803.1	1.86e-91	95.77	PREDICTED: peptide methionine sulfoxide reductase A5 [Cucumis melo] >KAA0025687....	[more]
XP_038881316.1	1.51e-83	89.44	peptide methionine sulfoxide reductase A5 [Benincasa hispida]	[more]
KAG7034101.1	5.24e-79	86.52	Peptide methionine sulfoxide reductase A5, partial [Cucurbita argyrosperma subsp...	[more]
XP_023544873.1	4.21e-78	87.32	peptide methionine sulfoxide reductase A5-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Cucsat.G1900 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KMD5	2.21e-92	97.89	Protein-methionine-S-oxide reductase OS=Cucumis sativus OX=3659 GN=Csa_6G505300 ...	[more]
A0A5D3CMK1	8.99e-92	95.77	Protein-methionine-S-oxide reductase OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A1S3B2Q7	8.99e-92	95.77	Protein-methionine-S-oxide reductase OS=Cucumis melo OX=3656 GN=LOC103485114 PE=...	[more]
A0A6J1IPP3	8.48e-78	86.62	Protein-methionine-S-oxide reductase OS=Cucurbita maxima OX=3661 GN=LOC111478806...	[more]
A0A6J1GGV0	2.72e-76	85.92	Protein-methionine-S-oxide reductase OS=Cucurbita moschata OX=3662 GN=LOC1114537...	[more]

BLAST of Cucsat.G1900 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G18030.2	1.0e-46	69.84	Peptide methionine sulfoxide reductase family protein	[more]
AT2G18030.1	1.0e-46	69.84	Peptide methionine sulfoxide reductase family protein	[more]
AT5G61640.1	2.4e-19	40.35	peptidemethionine sulfoxide reductase 1	[more]
AT4G25130.1	9.1e-19	46.39	peptide met sulfoxide reductase 4	[more]
AT5G07460.1	5.0e-17	45.26	peptidemethionine sulfoxide reductase 2	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 145..165
None	No IPR available	PANTHER	PTHR42799	MITOCHONDRIAL PEPTIDE METHIONINE SULFOXIDE REDUCTASE	coord: 13..251
None	No IPR available	PANTHER	PTHR42799:SF3	PEPTIDE METHIONINE SULFOXIDE REDUCTASE A5	coord: 13..251
IPR002569	Peptide methionine sulphoxide reductase MsrA	TIGRFAM	TIGR00401	TIGR00401	coord: 50..195 e-value: 7.7E-39 score: 131.5
IPR002569	Peptide methionine sulphoxide reductase MsrA	PFAM	PF01625	PMSR	coord: 51..192 e-value: 1.2E-43 score: 148.9
IPR002569	Peptide methionine sulphoxide reductase MsrA	HAMAP	MF_01401	MsrA	coord: 49..204 score: 27.180485
IPR036509	Peptide methionine sulphoxide reductase MsrA superfamily	GENE3D	3.30.1060.10	Peptide methionine sulphoxide reductase MsrA	coord: 44..246 e-value: 2.4E-57 score: 196.0
IPR036509	Peptide methionine sulphoxide reductase MsrA superfamily	SUPERFAMILY	55068	Peptide methionine sulfoxide reductase	coord: 30..198

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsat.G1900.T1	Cucsat.G1900.T1	mRNA
Cucsat.G1900.T3	Cucsat.G1900.T3	mRNA
Cucsat.G1900.T2	Cucsat.G1900.T2	mRNA
Cucsat.G1900.T7	Cucsat.G1900.T7	mRNA
Cucsat.G1900.T5	Cucsat.G1900.T5	mRNA
Cucsat.G1900.T6	Cucsat.G1900.T6	mRNA
Cucsat.G1900.T9	Cucsat.G1900.T9	mRNA
Cucsat.G1900.T4	Cucsat.G1900.T4	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0034599	cellular response to oxidative stress
biological_process	GO:0002181	cytoplasmic translation
biological_process	GO:0000413	protein peptidyl-prolyl isomerization
biological_process	GO:0006412	translation
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005840	ribosome
molecular_function	GO:0036456	L-methionine-(S)-S-oxide reductase activity
molecular_function	GO:0008113	peptide-methionine (S)-S-oxide reductase activity
molecular_function	GO:0003755	peptidyl-prolyl cis-trans isomerase activity
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome