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Cucsat.G18969 (gene) Cucumber (B10) v3
Overview
Sequences
The following sequences are available for this feature:
Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.TCGATGAAGCTTTAGTTTATTTTGCTCAAATGCATGGCCATGGTTTTCTTGTGAATGAATATTCATTCGGTAGTGCTCTCAGTGCTTGTGCAGGTTTACAAGATTTGAAATTAGGTTCCCAAATCCACAGTTTAGTATATAGGTCAAACTATTTATCAGATGTGTATATGGGCTCTGCGCTAGTAGATATGTACTCTAAATGTGGAAGAGTTGAATATGCTCAAAGTGTTTTTGATGAAATGACTGTGAGAAGTAGAGTTTCTTGGAATAGCTTGATTACCTGTTATGAACAGAATGGTCCAGTTGATGAGGCTCTTAAGATTTTTGTTGAGATGATCAAATGTGGGGTTGAACCTGACGAGGTAACACTTGCAAGTGTTGTTAGTGCATGTGCAACTATCTCGGCAATCAAAGAAGGTCAGCAGATTCATGCTCGAGTTGTAAAGTGTGATGAATTTAGAAATGATCTTATTTTAGGAAATGCGTTGCTTGATATGTATGCTAAATGTAATAGGATTAACGAGGCTAGAATAATTTTTGATATGATGCCAATTAGGAGTGTGGTGTCTGAGACCTCAATGGTAAGTGGGTATGCAAAGGCATCCAAAGTTAAAGTTGCAAGATATATGTTCTCAAATATGATGGTGAAAGATGTAATTACTTGGAATGCGCTTATTGCAGGGTGTACTCAGAATGGA GATGAAGCTTTAGTTTATTTTGCTCAAATGCATGGCCATGGTTTTCTTGTGAATGAATATTCATTCGGTAGTGCTCTCAGTGCTTGTGCAGGTTTACAAGATTTGAAATTAGGTTCCCAAATCCACAGTTTAGTATATAGGTCAAACTATTTATCAGATGTGTATATGGGCTCTGCGCTAGTAGATATGTACTCTAAATGTGGAAGAGTTGAATATGCTCAAAGTGTTTTTGATGAAATGACTGTGAGAAGTAGAGTTTCTTGGAATAGCTTGATTACCTGTTATGAACAGAATGGTCCAGTTGATGAGGCTCTTAAGATTTTTGTTGAGATGATCAAATGTGGGGTTGAACCTGACGAGGTAACACTTGCAAGTGTTGTTAGTGCATGTGCAACTATCTCGGCAATCAAAGAAGGGTGTACTCAGAATGGA DEALVYFAQMHGHGFLVNEYSFGSALSACAGLQDLKLGSQIHSLVYRSNYLSDVYMGSALVDMYSKCGRVEYAQSVFDEMTVRSRVSWNSLITCYEQNGPVDEALKIFVEMIKCGVEPDEVTLASVVSACATISAIKEGCTQNG Homology
BLAST of Cucsat.G18969 vs. ExPASy Swiss-Prot
Match: Q9SIT7 (Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E76 PE=3 SV=1) HSP 1 Score: 191.8 bits (486), Expect = 5.3e-48 Identity = 95/144 (65.97%), Postives = 114/144 (79.17%), Query Frame = 0
BLAST of Cucsat.G18969 vs. ExPASy Swiss-Prot
Match: Q9CAA8 (Putative pentatricopeptide repeat-containing protein At1g68930 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H22 PE=3 SV=1) HSP 1 Score: 135.6 bits (340), Expect = 4.5e-31 Identity = 61/143 (42.66%), Postives = 95/143 (66.43%), Query Frame = 0
BLAST of Cucsat.G18969 vs. ExPASy Swiss-Prot
Match: Q9SX45 (Pentatricopeptide repeat-containing protein At1g50270 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E42 PE=2 SV=1) HSP 1 Score: 114.0 bits (284), Expect = 1.4e-24 Identity = 59/139 (42.45%), Postives = 86/139 (61.87%), Query Frame = 0
BLAST of Cucsat.G18969 vs. ExPASy Swiss-Prot
Match: P93011 (Pentatricopeptide repeat-containing protein At2g33760 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H6 PE=3 SV=1) HSP 1 Score: 113.6 bits (283), Expect = 1.8e-24 Identity = 55/136 (40.44%), Postives = 83/136 (61.03%), Query Frame = 0
BLAST of Cucsat.G18969 vs. ExPASy Swiss-Prot
Match: Q9S7F4 (Putative pentatricopeptide repeat-containing protein At2g01510 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H36 PE=3 SV=1) HSP 1 Score: 113.2 bits (282), Expect = 2.4e-24 Identity = 53/136 (38.97%), Postives = 85/136 (62.50%), Query Frame = 0
BLAST of Cucsat.G18969 vs. NCBI nr
Match: KAE8637288.1 (hypothetical protein CSA_004540, partial [Cucumis sativus]) HSP 1 Score: 276 bits (705), Expect = 6.74e-90 Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 0
BLAST of Cucsat.G18969 vs. NCBI nr
Match: XP_016903260.1 (PREDICTED: pentatricopeptide repeat-containing protein At2g13600 isoform X2 [Cucumis melo]) HSP 1 Score: 282 bits (721), Expect = 1.24e-89 Identity = 141/143 (98.60%), Postives = 142/143 (99.30%), Query Frame = 0
BLAST of Cucsat.G18969 vs. NCBI nr
Match: XP_031742312.1 (LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At2g13600-like [Cucumis sativus]) HSP 1 Score: 276 bits (705), Expect = 2.33e-86 Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 0
BLAST of Cucsat.G18969 vs. NCBI nr
Match: XP_004149135.2 (LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At2g13600 [Cucumis sativus]) HSP 1 Score: 276 bits (705), Expect = 2.33e-86 Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 0
BLAST of Cucsat.G18969 vs. NCBI nr
Match: XP_008464730.1 (PREDICTED: pentatricopeptide repeat-containing protein At2g13600 isoform X1 [Cucumis melo] >KAA0065508.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK08748.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]) HSP 1 Score: 270 bits (691), Expect = 2.71e-84 Identity = 136/138 (98.55%), Postives = 137/138 (99.28%), Query Frame = 0
BLAST of Cucsat.G18969 vs. ExPASy TrEMBL
Match: A0A1S4E5K7 (pentatricopeptide repeat-containing protein At2g13600 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103502546 PE=4 SV=1) HSP 1 Score: 282 bits (721), Expect = 6.01e-90 Identity = 141/143 (98.60%), Postives = 142/143 (99.30%), Query Frame = 0
BLAST of Cucsat.G18969 vs. ExPASy TrEMBL
Match: A0A0A0KJ63 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G003610 PE=4 SV=1) HSP 1 Score: 276 bits (705), Expect = 1.13e-86 Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 0
BLAST of Cucsat.G18969 vs. ExPASy TrEMBL
Match: A0A5A7VCZ2 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold76G00590 PE=4 SV=1) HSP 1 Score: 270 bits (691), Expect = 1.31e-84 Identity = 136/138 (98.55%), Postives = 137/138 (99.28%), Query Frame = 0
BLAST of Cucsat.G18969 vs. ExPASy TrEMBL
Match: A0A1S3CNR0 (pentatricopeptide repeat-containing protein At2g13600 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103502546 PE=4 SV=1) HSP 1 Score: 270 bits (691), Expect = 1.31e-84 Identity = 136/138 (98.55%), Postives = 137/138 (99.28%), Query Frame = 0
BLAST of Cucsat.G18969 vs. ExPASy TrEMBL
Match: A0A6J1HNH1 (pentatricopeptide repeat-containing protein At2g13600 OS=Cucurbita maxima OX=3661 GN=LOC111465245 PE=4 SV=1) HSP 1 Score: 254 bits (649), Expect = 2.17e-78 Identity = 125/139 (89.93%), Postives = 133/139 (95.68%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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