Cucsat.G18724 (gene) Cucumber (B10) v3

Overview


Name	Cucsat.G18724
Type	gene
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	ctg3412: 110034 .. 113436 (+)
RNA-Seq Expression	Cucsat.G18724
Synteny	Cucsat.G18724

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GGAAGGAACAAGGGTATGTGGATCGTGACGACGAAGGCAAGTTGCGGGAGAAGATGAAGGACTTAAAGGTGTTGGTGATCATTCAACAAGCAATCCATGATGTAGGAGAATATGCTGAAGAATATTCCTTGTCTGGTTTATTGATCAAAGTTCTGTATTTATACCAGAGTATGAAAATTATGCATAAATAGCTAAATTATCCAAATTAACTAAGGAATGTAATATAATTAACCTAATGTAATGTAATTAGCCTAATTTACAGAATTTACGTTAATACATGGGTTTTTTGTGAATTGCTGTAGCAACAACGTCAAAGTAGGCGTGGCTGATTTTGCAAAAGGCGTTTCAAGGAGATTCAAGAGTACTTATGGTGAAATTGCAATCACTTAGGCGAGACTTTGAGACCTTGTTGATGAAGAATGGAGAATCAATTGCTGATTTTTTGTCACGGGCAACAACAATTATTAGTCAAATGTGAACCTACGACGAGACGATTACGAATCAGGTCATAGTTGAGAAGGTATTGAGAAGCTTGACTCCAAAGTTTGATCATGTAGTGGCTGCAATAGAAGAATCAAAGGATGTGTCCACTTTTTCATTTAATGAATTGATGGGATCTCTTCAAGCACATGAGTCGAGAATTAACAGTTCGACGAAAAGGAACGAAGAAAAAGCGTTTCAAGTAAAGGATTTACCCCCGAGGTATGGCGACGGTGATTGATCCACAAATTGAGGCCGAGGAAGAGGAGGATATCGCAAGCGAGGTCGTGGTTTCAAAAAAGGAAGCAACCGAAATGAAGAACAAAGGCAGTTAGGAGAGCAATCAAGCAGCAAAGCTAGTATTCAGTGTTACCATTGCAAGAAGTTTGGTCACGTAAAGGCGGATCGTTGGTACAAAAATTAGTGAGCCAATTTCGCAGCAGAGTATGAAGCATCGAAGAATGCTGAAGGGGCGAAAGTAAGCTTTTCATGGCAAATGTACCTAGCTATCAAAAGACAGCGGAGGTATGGTTCATTGATAATGGTTGTTCAAATCACATGACGTGTTTGAAGCCTATATTCAAGGAGCTTAACCAAGGAGAAAAGTTGAAGGTGGAACTTGGAAACGACAATGAGCTACAAGTGAAAGGCAAAGGTACGGTGGAAATTGAAACTCGCCATGGAAAAAGAATTCTCACAAATGTTAAATATGTGCCCGATATTGGATGTAACTTGTTGAGTGTTGGACAACTAATGGATAGTGGGCATTCTATCTTGTTCAATGATGGTGCATGTTTGATCAAAGATAAGCAAACGGGATGAGTTATGGCAAAATTCAAGATGACCCAAAGCAAAATGTTTCCGCTAGAAGTCTCAAATGTAGATAATTTTGTCCTCGCTACTACATTACAACAATTTGTACAGCAAAGAATGAACTCGGTGCTATGACATTTACGGTATAGACATCTCAACATCAAAGGGCTAACATTGCTAAATCAACGAGGCATGTTTACTGCGCTAACAAAAATTTGTCATTGACATATATGGAAAACAAACTCGAAAGTCTTTTCCTGTCGAGAAAGCTTGGAGAGTCTCGAAGTGTCTCTAGTTAATTCATGTTGATTTGTGTCGGCCAATGCAAATGAAGTCTCTTGGTGGAAGCTTTTATTTCTTGCTTTTCCCGAACGATTATAGCCATATGAGTTGGGTTTATTTTCTAGAAAGCAAATCGAAGACATTTGAGAAGTTCAAGCACTTTAAGGCGAAGGTGGGAAAGCAAAGTGGCATGTTCATCAAATCTCTTCGCAACGATAGAGGTGGAGAATTCTTGTTCAATTACTTCAACCATTTTTACAAAGAACGTGGCATCCATTGGGAGTTGATAACGCCTTACACTCTAGAGCAAAACGAGGTCGCTAAGAGGAAGAATCGAACTGTGGTGGGGATGACGAGAAGCATGTTGCAAGTAAAAGACCTTTCAGATGTTTTTTGGGTTGAAGCGGTCTCAACTTCTGTCTACTTATTAAACATCTCACCAACGAAGGCTATAATGAATAAGACTCCATTTGAAGCTTGGTGCAGCAAAAACCCGAATGTAAGTCATTTAAGAGTTTTTGGTTGTATTTCTTATGCTTTGGTACCTTCTCAAGTTCGTCAAAAACTTGATGGAAAATTCGAAAAATGCATTTTTGTTGGTTATTGTACTCAATCCAAAGCATATAGATTGTATAACCCTCTTAATGGCAAGATTCTCACAATAAGAGATGTAGTGTTTGATGAGAATGTTAGTTGGGTTTGACAAAATAATGAAGAAAATGTTTCCTTGGTGGGTGGTGAATCGGCAAATGATGGAGCACAAACGGTGGTCAAAAACTCGAATGGATCCTCAATGGAGACGCCTACCTCAACACCTCCATTAAGTGTTCCATCAACACCACAAAGCTACCACTCTTCGTCAAGCCATGATGAAACATTGGATGAGTTGCCACCTTGGAGGTTCTGATCCATGGAGGACATCTATAATTCTTCTCAATTTGCCCTTATGGTTTCTGACCCGGTGTGTTATGATGAGGCAGCAACCAATGAAGGAAGAAATAACAACGATTGAGAAGAATGGGACGTGGAAAATGGTAGAATCGGAGGGAAAAAGTGCAATCGACTTGAAGTGGGTCTTTAAGACGAAATTTGTTGCGGATGGAATTTTAGAGAAGTACAAAGCTCGACTCGTGGCGAAAGGATACGTGCAGCAACACGGTAGTGATTTTGAGAAAACTTTCTCTTCAATAGCTCATTTTGAAAACGTGAAGATTGTTCTAGCATTGGCAGCACAACGACAATGGTCGGTTTATCAATTTGATGTCAAGTTAGCCTTTCTCCATGGAGAATTGCAAGAAGAAGTCTATGTTGGACAACCAGAAGGTTTTGTCATAGAAGGCAGCAAAGAAAAGGTGTATAAGTTGACAAAGGCTTTGTACGGGTTTGAAACTTATGAGAAGGTTTTAAATATGTTATGCGTTACACTGTTGGAGCAATGTAGTATGGCATTTTGTACTCTAAATTTTCCAATTTCAAGCTATGCGGGTTCACGGACAGCGATTGGGCGAGCTCATTGGATGATAGGCAGAGTGTTTCAGCAAATGTATTCACACTCGAGTTAGGAGTTGTCACTTGGAGCTCGAAGAAACAAGTAAGAGTTGCTTTGTCGTCTTCTGAAGTGGAATATGCTGCAGCAACTTCAGCAGCATGAAGAATGCTAACAGGACTCCAACATGAACAAGAGGGAGCAATGGTGATATTTTGCGACAACAAAGCAACGATCTCAATGACAAAAAATATGACGTATCATAGCCAGATAAAGCACATTGATATTCGCTTCCATTTTATTTGTGATTTGGTTGCGAAAGAGTAGGTTTCTCTGTCATAT

Coding sequence (CDS)

ATGATGAAACATTGGATGAGTTGCCACCTTGGAGGTTCTGATCCATGGAGGACATCTATAATTCTTCTCAATTTGCCCTTATGGTTTCTGACCCGGTGTGTTATGATGAGGCAGCAACCAATGAAGGAAGAAATAACAACGATTGAGAAGAATGGGACGTGGAAAATGGTAGAATCGGAGGGAAAAAGTGCAATCGACTTGAAGTGGGTCTTTAAGACGAAATTTGTTGCGGATGGAATTTTAGAGAAGTACAAAGCTCGACTCGTGGCGAAAGGATACGTGCAGCAACACGGTAGTGATTTTGAGAAAACTTTCTCTTCAATAGCTCATTTTGAAAACGTGAAGATTGTTCTAGCATTGGCAGCACAACGACAATGGTCGGTTTATCAATTTGATGTCAAGTTAGCCTTTCTCCATGGAGAATTGCAAGAAGAAGTCTATGTTGGACAACCAGAAGGTTTTGTCATAGAAGGCAGCAAAGAAAAGGTGTATAAGTTGACAAAGGCTTTGTACGGGTTTGAAACTTATGAGAAGGTTTTAAATATGTTATGCGTTACACTGTTGGAGCAATGTAGTATGGCATTTTGTACTCTAAATTTTCCAATTTCAAGCTATGCGGGTTCACGGACAGCGATTGGGCGAGCTCATTGGATGATAGGCAGAGTGTTTCAGCAAATGTATTCACACTCGAGTTAG

Protein sequence

MMKHWMSCHLGGSDPWRTSIILLNLPLWFLTRCVMMRQQPMKEEITTIEKNGTWKMVESEGKSAIDLKWVFKTKFVADGILEKYKARLVAKGYVQQHGSDFEKTFSSIAHFENVKIVLALAAQRQWSVYQFDVKLAFLHGELQEEVYVGQPEGFVIEGSKEKVYKLTKALYGFETYEKVLNMLCVTLLEQCSMAFCTLNFPISSYAGSRTAIGRAHWMIGRVFQQMYSHSS

Homology

[Close]

BLAST of Cucsat.G18724 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 6.1e-30
Identity = 66/135 (48.89%), Postives = 93/135 (68.89%), Query Frame = 0


Query: 41  MKEEITTIEKNGTWKMVE-SEGKSAIDLKWVFKTKFVADGILEKYKARLVAKGYVQQHGS 100
           M+EE+ +++KNGT+K+VE  +GK  +  KWVFK K   D  L +YKARLV KG+ Q+ G 
Sbjct: 830 MQEEMESLQKNGTYKLVELPKGKRPLKCKWVFKLKKDGDCKLVRYKARLVVKGFEQKKGI 889

Query: 101 DFEKTFSSIAHFENVKIVLALAAQRQWSVYQFDVKLAFLHGELQEEVYVGQPEGFVIEGS 160
           DF++ FS +    +++ +L+LAA     V Q DVK AFLHG+L+EE+Y+ QPEGF + G 
Sbjct: 890 DFDEIFSPVVKMTSIRTILSLAASLDLEVEQLDVKTAFLHGDLEEEIYMEQPEGFEVAGK 949

Query: 161 KEKVYKLTKALYGFE 175
           K  V KL K+LYG +
Sbjct: 950 KHMVCKLNKSLYGLK 964

[Close]

BLAST of Cucsat.G18724 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 1.7e-24
Identity = 60/139 (43.17%), Postives = 83/139 (59.71%), Query Frame = 0


Query: 38   QQPMKEEITTIEKNGTWKMVESEGKSA--IDLKWVFKTKFVADGILEKYKARLVAKGYVQ 97
            +Q M  EI     N TW +V     S   +  +W+F  KF +DG L +YKARLVAKGY Q
Sbjct: 952  RQAMGSEINAQIGNHTWDLVPPPPPSVTIVGCRWIFTKKFNSDGSLNRYKARLVAKGYNQ 1011

Query: 98   QHGSDFEKTFSSIAHFENVKIVLALAAQRQWSVYQFDVKLAFLHGELQEEVYVGQPEGFV 157
            + G D+ +TFS +    +++IVL +A  R W + Q DV  AFL G L +EVY+ QP GFV
Sbjct: 1012 RPGLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDEVYMSQPPGFV 1071

Query: 158  IEGSKEKVYKLTKALYGFE 175
             +   + V +L KA+YG +
Sbjct: 1072 DKDRPDYVCRLRKAIYGLK 1090

[Close]

BLAST of Cucsat.G18724 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 8.6e-24
Identity = 64/174 (36.78%), Postives = 92/174 (52.87%), Query Frame = 0


Query: 3    KHWMSCHLGGSDPWRTSIILLNLPLWFLTRCVMMRQQPMKEEITTIEKNGTWKMVESEGK 62
            K+ ++  L      RT+I  L    W         +  M  EI     N TW +V     
Sbjct: 943  KYSLAVSLAAESEPRTAIQALKDERW---------RNAMGSEINAQIGNHTWDLVPPPPS 1002

Query: 63   --SAIDLKWVFKTKFVADGILEKYKARLVAKGYVQQHGSDFEKTFSSIAHFENVKIVLAL 122
              + +  +W+F  K+ +DG L +YKARLVAKGY Q+ G D+ +TFS +    +++IVL +
Sbjct: 1003 HVTIVGCRWIFTKKYNSDGSLNRYKARLVAKGYNQRPGLDYAETFSPVIKSTSIRIVLGV 1062

Query: 123  AAQRQWSVYQFDVKLAFLHGELQEEVYVGQPEGFVIEGSKEKVYKLTKALYGFE 175
            A  R W + Q DV  AFL G L ++VY+ QP GF+ +     V KL KALYG +
Sbjct: 1063 AVDRSWPIRQLDVNNAFLQGTLTDDVYMSQPPGFIDKDRPNYVCKLRKALYGLK 1107

[Close]

BLAST of Cucsat.G18724 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 104.0 bits (258), Expect = 2.3e-21
Identity = 56/152 (36.84%), Postives = 91/152 (59.87%), Query Frame = 0


Query: 38   QQPMKEEITTIEKNGTWKMVE-SEGKSAIDLKWVFKTKFVADGILEKYKARLVAKGYVQQ 97
            ++ +  E+   + N TW + +  E K+ +D +WVF  K+   G   +YKARLVA+G+ Q+
Sbjct: 907  EEAINTELNAHKINNTWTITKRPENKNIVDSRWVFSVKYNELGNPIRYKARLVARGFTQK 966

Query: 98   HGSDFEKTFSSIAHFENVKIVLALAAQRQWSVYQFDVKLAFLHGELQEEVYVGQPEGFVI 157
            +  D+E+TF+ +A   + + +L+L  Q    V+Q DVK AFL+G L+EE+Y+  P+G  I
Sbjct: 967  YQIDYEETFAPVARISSFRFILSLVIQYNLKVHQMDVKTAFLNGTLKEEIYMRLPQG--I 1026

Query: 158  EGSKEKVYKLTKALYG--------FETYEKVL 181
              + + V KL KA+YG        FE +E+ L
Sbjct: 1027 SCNSDNVCKLNKAIYGLKQAARCWFEVFEQAL 1056

[Close]

BLAST of Cucsat.G18724 vs. ExPASy Swiss-Prot
Match: P92520 (Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 GN=AtMg00820 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 4.9e-11
Identity = 34/86 (39.53%), Postives = 54/86 (62.79%), Query Frame = 0


Query: 39  QPMKEEITTIEKNGTWKMVESE-GKSAIDLKWVFKTKFVADGILEKYKARLVAKGYVQQH 98
           Q M+EE+  + +N TW +V     ++ +  KWVFKTK  +DG L++ KARLVAKG+ Q+ 
Sbjct: 42  QAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQEE 101

Query: 99  GSDFEKTFSSIAHFENVKIVLALAAQ 124
           G  F +T+S +     ++ +L +A Q
Sbjct: 102 GIYFVETYSPVVRTATIRTILNVAQQ 127

[Close]

BLAST of Cucsat.G18724 vs. NCBI nr
Match: KAA0066378.1 (retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 231 bits (590), Expect = 3.23e-69
Identity = 116/162 (71.60%), Postives = 133/162 (82.10%), Query Frame = 0


Query: 3   KHWMSCHLGGSDPWRTSIILLNLPLWFLTRCVMMRQQPMKEEITTIEKNGTWKMVE-SEG 62
           +H M+ HL G  PW+ SIILLNL LWFLT+C+MMRQQ MKEE+  IEKNGTWKMV+  EG
Sbjct: 380 EHQMNYHLRGFGPWKISIILLNLLLWFLTQCLMMRQQAMKEEMAAIEKNGTWKMVDLPEG 439

Query: 63  KSAIDLKWVFKTKFVADGILEKYKARLVAKGYVQQHGSDFEKTFSSIAHFENVKIVLALA 122
           K+AI LKWV+K+KF ADG LEK+KA LVAKGY QQHG DF++T S IA FE VKIVLAL 
Sbjct: 440 KNAIGLKWVYKSKFAADGSLEKHKAHLVAKGYAQQHGIDFKQTLSPIALFETVKIVLALE 499

Query: 123 AQRQWSVYQFDVKLAFLHGELQEEVYVGQPEGFVIEGSKEKV 163
           A +QW VYQFDVK AFL+GELQEEVYV QPEGFV + S+EKV
Sbjct: 500 ALQQWPVYQFDVKSAFLNGELQEEVYVEQPEGFVKKDSEEKV 541

[Close]

BLAST of Cucsat.G18724 vs. NCBI nr
Match: TYK00906.1 (putative gag-pol polyprotein, identical [Cucumis melo var. makuwa])

HSP 1 Score: 231 bits (590), Expect = 1.66e-68
Identity = 116/162 (71.60%), Postives = 133/162 (82.10%), Query Frame = 0


Query: 3   KHWMSCHLGGSDPWRTSIILLNLPLWFLTRCVMMRQQPMKEEITTIEKNGTWKMVE-SEG 62
           +H M+ HL G  PW+ SIILLNL LWFLT+C+MMRQQ MKEE+  IEKNGTWKMV+  EG
Sbjct: 457 EHQMNYHLRGFGPWKISIILLNLLLWFLTQCLMMRQQAMKEEMAAIEKNGTWKMVDLPEG 516

Query: 63  KSAIDLKWVFKTKFVADGILEKYKARLVAKGYVQQHGSDFEKTFSSIAHFENVKIVLALA 122
           K+AI LKWV+K+KF ADG LEK+KA LVAKGY QQHG DF++T S IA FE VKIVLAL 
Sbjct: 517 KNAIGLKWVYKSKFAADGSLEKHKAHLVAKGYAQQHGIDFKQTLSPIALFETVKIVLALE 576

Query: 123 AQRQWSVYQFDVKLAFLHGELQEEVYVGQPEGFVIEGSKEKV 163
           A +QW VYQFDVK AFL+GELQEEVYV QPEGFV + S+EKV
Sbjct: 577 ALQQWPVYQFDVKSAFLNGELQEEVYVEQPEGFVKKDSEEKV 618

[Close]

BLAST of Cucsat.G18724 vs. NCBI nr
Match: KAA0050371.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK03584.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 196 bits (499), Expect = 1.11e-59
Identity = 99/136 (72.79%), Postives = 114/136 (83.82%), Query Frame = 0


Query: 40  PMKEEITTIEKNGTWKMVE-SEGKSAIDLKWVFKTKFVADGILEKYKARLVAKGYVQQHG 99
           P + +  TIEKNGTWKMV+ SE K+AI LKWV+KTKF   G LEK+KARLVAKGY QQHG
Sbjct: 31  PSQRKNDTIEKNGTWKMVDLSEEKNAIGLKWVYKTKFATYGSLEKHKARLVAKGYAQQHG 90

Query: 100 SDFEKTFSSIAHFENVKIVLALAAQRQWSVYQFDVKLAFLHGELQEEVYVGQPEGFVIEG 159
            DFE+ FS +A FE V+IVLALAAQ+QWS+YQFDVK AFL+GELQEEVYV QPEGFV + 
Sbjct: 91  IDFEEIFSPVARFETVRIVLALAAQQQWSIYQFDVKSAFLNGELQEEVYVEQPEGFVKKD 150

Query: 160 SKEKVYKLTKALYGFE 174
           S+EKVYKLTKALYG +
Sbjct: 151 SEEKVYKLTKALYGLK 166

[Close]

BLAST of Cucsat.G18724 vs. NCBI nr
Match: KAA0054939.1 (putative gag-pol polyprotein, identical [Cucumis melo var. makuwa] >TYK22728.1 putative gag-pol polyprotein, identical [Cucumis melo var. makuwa])

HSP 1 Score: 206 bits (523), Expect = 7.62e-59
Identity = 103/138 (74.64%), Postives = 119/138 (86.23%), Query Frame = 0


Query: 38  QQPMKEEITTIEKNGTWKMVE-SEGKSAIDLKWVFKTKFVADGILEKYKARLVAKGYVQQ 97
           Q+ MKEE+  IEKNGTWKMV+  EGK+AI LKWV+K+KF ADG LEK+KA LVAKG+ QQ
Sbjct: 449 QKTMKEEMAAIEKNGTWKMVDLPEGKNAIGLKWVYKSKFAADGSLEKHKAHLVAKGHAQQ 508

Query: 98  HGSDFEKTFSSIAHFENVKIVLALAAQRQWSVYQFDVKLAFLHGELQEEVYVGQPEGFVI 157
           HG DFE+TFS +A FE V+IVLALAAQ+QWSVYQFDVK AFL+GELQEEVYV QPEGFV 
Sbjct: 509 HGIDFEETFSIVARFETVRIVLALAAQQQWSVYQFDVKPAFLNGELQEEVYVEQPEGFVK 568

Query: 158 EGSKEKVYKLTKALYGFE 174
           + S+EKVYKLTKALYG +
Sbjct: 569 KDSEEKVYKLTKALYGLK 586

[Close]

BLAST of Cucsat.G18724 vs. NCBI nr
Match: KAA0040613.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK05657.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 204 bits (518), Expect = 5.42e-58
Identity = 102/145 (70.34%), Postives = 122/145 (84.14%), Query Frame = 0


Query: 41  MKEEITTIEKNGTWKMVE-SEGKSAIDLKWVFKTKFVADGILEKYKARLVAKGYVQQHGS 100
           MKEE+TTIEKNGTWKMV+  +GK+AIDLKWV+KTKF ADG LEK+KARLVAKG+ QQHG 
Sbjct: 456 MKEEMTTIEKNGTWKMVDLPKGKNAIDLKWVYKTKFAADGSLEKHKARLVAKGHAQQHGI 515

Query: 101 DFEKTFSSIAHFENVKIVLALAAQRQWSVYQFDVKLAFLHGELQEEVYVGQPEGFVIEGS 160
           +FE+TFS +A FE V++VLALAAQ+QWSVYQFDVK  FL+ EL+EEVYV QP+GFV + S
Sbjct: 516 NFEETFSPVARFETVRVVLALAAQQQWSVYQFDVKSDFLNEELEEEVYVEQPKGFVKKDS 575

Query: 161 KEKVYKLTKALYGFETYEKVLNMLC 184
           +EKVYKLTKALYG +   +   M C
Sbjct: 576 EEKVYKLTKALYGLKQAPRTWFMQC 600

[Close]

BLAST of Cucsat.G18724 vs. ExPASy TrEMBL
Match: A0A5A7VF84 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21G004510 PE=4 SV=1)

HSP 1 Score: 231 bits (590), Expect = 1.56e-69
Identity = 116/162 (71.60%), Postives = 133/162 (82.10%), Query Frame = 0


Query: 3   KHWMSCHLGGSDPWRTSIILLNLPLWFLTRCVMMRQQPMKEEITTIEKNGTWKMVE-SEG 62
           +H M+ HL G  PW+ SIILLNL LWFLT+C+MMRQQ MKEE+  IEKNGTWKMV+  EG
Sbjct: 380 EHQMNYHLRGFGPWKISIILLNLLLWFLTQCLMMRQQAMKEEMAAIEKNGTWKMVDLPEG 439

Query: 63  KSAIDLKWVFKTKFVADGILEKYKARLVAKGYVQQHGSDFEKTFSSIAHFENVKIVLALA 122
           K+AI LKWV+K+KF ADG LEK+KA LVAKGY QQHG DF++T S IA FE VKIVLAL 
Sbjct: 440 KNAIGLKWVYKSKFAADGSLEKHKAHLVAKGYAQQHGIDFKQTLSPIALFETVKIVLALE 499

Query: 123 AQRQWSVYQFDVKLAFLHGELQEEVYVGQPEGFVIEGSKEKV 163
           A +QW VYQFDVK AFL+GELQEEVYV QPEGFV + S+EKV
Sbjct: 500 ALQQWPVYQFDVKSAFLNGELQEEVYVEQPEGFVKKDSEEKV 541

[Close]

BLAST of Cucsat.G18724 vs. ExPASy TrEMBL
Match: A0A5D3BRM6 (Putative gag-pol polyprotein, identical OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold602G00690 PE=4 SV=1)

HSP 1 Score: 231 bits (590), Expect = 8.05e-69
Identity = 116/162 (71.60%), Postives = 133/162 (82.10%), Query Frame = 0


Query: 3   KHWMSCHLGGSDPWRTSIILLNLPLWFLTRCVMMRQQPMKEEITTIEKNGTWKMVE-SEG 62
           +H M+ HL G  PW+ SIILLNL LWFLT+C+MMRQQ MKEE+  IEKNGTWKMV+  EG
Sbjct: 457 EHQMNYHLRGFGPWKISIILLNLLLWFLTQCLMMRQQAMKEEMAAIEKNGTWKMVDLPEG 516

Query: 63  KSAIDLKWVFKTKFVADGILEKYKARLVAKGYVQQHGSDFEKTFSSIAHFENVKIVLALA 122
           K+AI LKWV+K+KF ADG LEK+KA LVAKGY QQHG DF++T S IA FE VKIVLAL 
Sbjct: 517 KNAIGLKWVYKSKFAADGSLEKHKAHLVAKGYAQQHGIDFKQTLSPIALFETVKIVLALE 576

Query: 123 AQRQWSVYQFDVKLAFLHGELQEEVYVGQPEGFVIEGSKEKV 163
           A +QW VYQFDVK AFL+GELQEEVYV QPEGFV + S+EKV
Sbjct: 577 ALQQWPVYQFDVKSAFLNGELQEEVYVEQPEGFVKKDSEEKV 618

[Close]

BLAST of Cucsat.G18724 vs. ExPASy TrEMBL
Match: A0A5D3BWT3 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold293G00840 PE=4 SV=1)

HSP 1 Score: 196 bits (499), Expect = 5.39e-60
Identity = 99/136 (72.79%), Postives = 114/136 (83.82%), Query Frame = 0


Query: 40  PMKEEITTIEKNGTWKMVE-SEGKSAIDLKWVFKTKFVADGILEKYKARLVAKGYVQQHG 99
           P + +  TIEKNGTWKMV+ SE K+AI LKWV+KTKF   G LEK+KARLVAKGY QQHG
Sbjct: 31  PSQRKNDTIEKNGTWKMVDLSEEKNAIGLKWVYKTKFATYGSLEKHKARLVAKGYAQQHG 90

Query: 100 SDFEKTFSSIAHFENVKIVLALAAQRQWSVYQFDVKLAFLHGELQEEVYVGQPEGFVIEG 159
            DFE+ FS +A FE V+IVLALAAQ+QWS+YQFDVK AFL+GELQEEVYV QPEGFV + 
Sbjct: 91  IDFEEIFSPVARFETVRIVLALAAQQQWSIYQFDVKSAFLNGELQEEVYVEQPEGFVKKD 150

Query: 160 SKEKVYKLTKALYGFE 174
           S+EKVYKLTKALYG +
Sbjct: 151 SEEKVYKLTKALYGLK 166

[Close]

BLAST of Cucsat.G18724 vs. ExPASy TrEMBL
Match: A0A5A7UN91 (Putative gag-pol polyprotein, identical OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G00520 PE=4 SV=1)

HSP 1 Score: 206 bits (523), Expect = 3.69e-59
Identity = 103/138 (74.64%), Postives = 119/138 (86.23%), Query Frame = 0


Query: 38  QQPMKEEITTIEKNGTWKMVE-SEGKSAIDLKWVFKTKFVADGILEKYKARLVAKGYVQQ 97
           Q+ MKEE+  IEKNGTWKMV+  EGK+AI LKWV+K+KF ADG LEK+KA LVAKG+ QQ
Sbjct: 449 QKTMKEEMAAIEKNGTWKMVDLPEGKNAIGLKWVYKSKFAADGSLEKHKAHLVAKGHAQQ 508

Query: 98  HGSDFEKTFSSIAHFENVKIVLALAAQRQWSVYQFDVKLAFLHGELQEEVYVGQPEGFVI 157
           HG DFE+TFS +A FE V+IVLALAAQ+QWSVYQFDVK AFL+GELQEEVYV QPEGFV 
Sbjct: 509 HGIDFEETFSIVARFETVRIVLALAAQQQWSVYQFDVKPAFLNGELQEEVYVEQPEGFVK 568

Query: 158 EGSKEKVYKLTKALYGFE 174
           + S+EKVYKLTKALYG +
Sbjct: 569 KDSEEKVYKLTKALYGLK 586

[Close]

BLAST of Cucsat.G18724 vs. ExPASy TrEMBL
Match: A0A5A7TC06 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G001200 PE=4 SV=1)

HSP 1 Score: 204 bits (518), Expect = 2.62e-58
Identity = 102/145 (70.34%), Postives = 122/145 (84.14%), Query Frame = 0


Query: 41  MKEEITTIEKNGTWKMVE-SEGKSAIDLKWVFKTKFVADGILEKYKARLVAKGYVQQHGS 100
           MKEE+TTIEKNGTWKMV+  +GK+AIDLKWV+KTKF ADG LEK+KARLVAKG+ QQHG 
Sbjct: 456 MKEEMTTIEKNGTWKMVDLPKGKNAIDLKWVYKTKFAADGSLEKHKARLVAKGHAQQHGI 515

Query: 101 DFEKTFSSIAHFENVKIVLALAAQRQWSVYQFDVKLAFLHGELQEEVYVGQPEGFVIEGS 160
           +FE+TFS +A FE V++VLALAAQ+QWSVYQFDVK  FL+ EL+EEVYV QP+GFV + S
Sbjct: 516 NFEETFSPVARFETVRVVLALAAQQQWSVYQFDVKSDFLNEELEEEVYVEQPKGFVKKDS 575

Query: 161 KEKVYKLTKALYGFETYEKVLNMLC 184
           +EKVYKLTKALYG +   +   M C
Sbjct: 576 EEKVYKLTKALYGLKQAPRTWFMQC 600

The following BLAST results are available for this feature:

BLAST of Cucsat.G18724 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	6.1e-30	48.89	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
Q9ZT94	1.7e-24	43.17	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	8.6e-24	36.78	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
P04146	2.3e-21	36.84	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
P92520	4.9e-11	39.53	Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Cucsat.G18724 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0066378.1	3.23e-69	71.60	retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
TYK00906.1	1.66e-68	71.60	putative gag-pol polyprotein, identical [Cucumis melo var. makuwa]	[more]
KAA0050371.1	1.11e-59	72.79	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0054939.1	7.62e-59	74.64	putative gag-pol polyprotein, identical [Cucumis melo var. makuwa] >TYK22728.1 p...	[more]
KAA0040613.1	5.42e-58	70.34	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]

BLAST of Cucsat.G18724 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VF84	1.56e-69	71.60	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3BRM6	8.05e-69	71.60	Putative gag-pol polyprotein, identical OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5D3BWT3	5.39e-60	72.79	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7UN91	3.69e-59	74.64	Putative gag-pol polyprotein, identical OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5A7TC06	2.62e-58	70.34	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 1..160 e-value: 3.9E-27 score: 96.8
None	No IPR available	PANTHER	PTHR45895	FAMILY NOT NAMED	coord: 1..216
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 1..151 score: 13.703772
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 8..160

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsat.G18724.T2	Cucsat.G18724.T2	mRNA
Cucsat.G18724.T1	Cucsat.G18724.T1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding