Cucsat.G18595 (gene) Cucumber (B10) v3

Overview


Name	Cucsat.G18595
Type	gene
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	40S ribosomal protein S14
Location	ctg3379: 1606072 .. 1608411 (-)
RNA-Seq Expression	Cucsat.G18595
Synteny	Cucsat.G18595

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCGTAGAGCTCCACAAAGGGGAAGCTACTTCGGCCATCTTTTTCGTAAACATGGTGAGCACATCTAATCTTTCTGGTTGGCTTCTTCCATTGCAGTTCTTGTCGCCTTTTTCTGCCCCATGCCAATGATAGTCGTTCTAGTATGGATTTGTGAAGAAGTGTTTTGAATCTATTTTCTTCAACACTTCGAATGTCGTCGTCAAGGTTCTTCCGTCTCTGTTTCAAGATTTTGCTGCTAATAATGTAGTATGAAATCCGGAGTTTAATAGAGCGTATGGTTATATGATTATCGTGATTAATACTCATTATCCAGGATATTAGGTTATTTGGTATGCTCACTGCCATGTTTTGAAATTTAGGGTTTTAGGCAGTGGTGGGATATAGTAGATTGGGAGTGGATTCGAGCTTTTAAGTTGTCTGGTTTGGAGTCTATTGTTTATAAGAAGTACCTCGTCTTTGTTTGCTTAGCAGAGGCAGAGATGACCTATATTTATTTATGGGTTTTTGTTCATTTGTGTTTTGTGCTTTATGATTCTTCTCAATCGCCTATGGTTTCTTAGTGACTGGCTTTATGTTTCAGCATGAAAATCTGTTGAATATAGGAATCTTTACTTTGCTTTTGTTTGTGTTGGATTCCATAGTCTGGTTCAAGGAGGAAGACCAGGGAGCCTAAGGAAGAGACTGTGACTCTTGGTCCTGCAGTGAGGGAAGGCGAGCATGTGTTCGGTGTGGCTCACATTTTTGCCTCATTTAACGATACATTTATTGTAAGTGGAAAAATTTATATAATTTTGGTTTCTCGTTCGGTAACAGAATGATGACTTTGTTGTTTCAACAACAGCATGTGACTGATCTTTCTGGGAGGGAAACTCTTGTCCGCATTACAGGTGAAACAATTGAATAGTTTCTTCCTTCTTTAAATACTTGAAACCTGGAATTTTTGAAACTTTGAATTTGGGATCTCTCTATTTCTTAGATTTTGTTCCTTCCGTTGTGTAATTTCATTGATTGGTCCATATATGTATGTAAGTAAATTTAATACAAGCTGTAGAGAATCATTAAAATTCATTGTCTAGAGTAGATGAGTATGAAAACCTTCTGCATTTATGAATAAGAAGTGTTATGCTTTATGGAACACTACTAAAAGAAGTGTTATGCTTTATTTCTTCTTCTTATTATTTATTTATGTTATATTATTTTTCATGTGGGGTTTGGAAAGTTTAATTATGCATTTTGATGAACGCAGGTGGTATGAAGGTGAAAGCTGATAGGGATGAGTCCTCCCCCTACGCAGCTATGCTTGCAGCACAGGATGTTTCCCAAAGATGCAAGGTTCCATCCTCTTTTAATATTGTTTCTTAATCACTCTTTCCCCTCATTTTATGGATTGTAATCTTTGTACTTGGTTGGGTCTAATAATTTCTTCTGGAACTTATTTCATCCCATTTTCTTATTCATCTGTATGGTTTGTCAACTTTCTCACTCTGAACAACATTACTTGTGTGTGGCACGATGTCTTTCACGAAACAGGAACTCGGTATTACTGCTCTTCATATTAAACTGCGTGCTACCGGAGGAAACAAGACCAAAACACCTGGTCCAGGTGCCCAATCTGCACTACGTGCTCTTGCTCGTTCTGGGATGAGGATTGGACGCATAGGTGAATCCTTTGTCCCTCTACATTGATGAATATAGATCTAAGTACACGAATGCTGTACATTCTCACAACTTTTCATAATACTTTATTAGGTGTTAATCACTCATATGCGTTTTTTTATATTTTCTAGAGGATGTGACTCCAATTCCAACAGACAGCACTCGCCGAAAGGGTGGAAGAAGAGGAAGAAGGCTGTAAGCTTACTCCGGGATTCCTACTATTATGGCTGTGTCGATGGTTTCTCTGTGGTTCTGATGCTCCTTAAGCTTTGCGGACTTAGTTTTTCAGAACTCCAACTTGGTTTTTGATTATTGTTTTGTCAGGGATGTTTTGTCTTCGATTTTGTTTTATGTTGAACTTAGACAATGAAAGAGGAATTTTTGGCTTTAGATTAACAAATCAATACAATGCCCTTTGGTCTTATTATTATTGAAAGAAAATGGTGCGATGTCGTTCAATCCCATTAGTTATTTTTATATACATCTTAAGCTGATTTTATGCTATCAAGTTGAATTCAAAGTCCTTTCTGTAATTTTGTGTGCTAGGGTTTGTAGTAGTTTAGGCCTTAGGTTTTGTTTGGTGGAGAATTTTGAAAACAAACAATTCTCGAAGAGTATGAATATCGAAGTGTTTTCTGTATTCATTTTCAAATTATTCATATTTCATATTCGATATAAACTTTC

Coding sequence (CDS)

ATGATGACTTTGTTGTTTCAACAACAGCATGTGACTGATCTTTCTGGGAGGGAAACTCTTGTCCGCATTACAGGTGGTATGAAGGTGAAAGCTGATAGGGATGAGTCCTCCCCCTACGCAGCTATGCTTGCAGCACAGGATGTTTCCCAAAGATGCAAGGAACTCGGTATTACTGCTCTTCATATTAAACTGCGTGCTACCGGAGGAAACAAGACCAAAACACCTGGTCCAGGTGCCCAATCTGCACTACGTGCTCTTGCTCGTTCTGGGATGAGGATTGGACGCATAGAGGATGTGACTCCAATTCCAACAGACAGCACTCGCCGAAAGGGTGGAAGAAGAGGAAGAAGGCTGTAA

Protein sequence

MMTLLFQQQHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMRIGRIEDVTPIPTDSTRRKGGRRGRRL

Homology

[Close]

BLAST of Cucsat.G18595 vs. ExPASy Swiss-Prot
Match: P19950 (40S ribosomal protein S14 OS=Zea mays OX=4577 PE=3 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 5.3e-54
Identity = 106/109 (97.25%), Postives = 109/109 (100.00%), Query Frame = 0


Query: 10  HVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGG 69
           HVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDV+QRCKELGITALHIKLRATGG
Sbjct: 41  HVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGG 100

Query: 70  NKTKTPGPGAQSALRALARSGMRIGRIEDVTPIPTDSTRRKGGRRGRRL 119
           NKTKTPGPGAQSALRALARSGM+IGRIEDVTP+PTDSTRRKGGRRGRRL
Sbjct: 101 NKTKTPGPGAQSALRALARSGMKIGRIEDVTPVPTDSTRRKGGRRGRRL 149

[Close]

BLAST of Cucsat.G18595 vs. ExPASy Swiss-Prot
Match: Q9SIH0 (40S ribosomal protein S14-1 OS=Arabidopsis thaliana OX=3702 GN=RPS14A PE=1 SV=1)

HSP 1 Score: 210.7 bits (535), Expect = 9.1e-54
Identity = 105/109 (96.33%), Postives = 109/109 (100.00%), Query Frame = 0


Query: 10  HVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGG 69
           HVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDV+QRCKELGITA+H+KLRATGG
Sbjct: 42  HVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVAQRCKELGITAMHVKLRATGG 101

Query: 70  NKTKTPGPGAQSALRALARSGMRIGRIEDVTPIPTDSTRRKGGRRGRRL 119
           NKTKTPGPGAQSALRALARSGM+IGRIEDVTPIPTDSTRRKGGRRGRRL
Sbjct: 102 NKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPTDSTRRKGGRRGRRL 150

[Close]

BLAST of Cucsat.G18595 vs. ExPASy Swiss-Prot
Match: Q9CAX6 (40S ribosomal protein S14-2 OS=Arabidopsis thaliana OX=3702 GN=RPS14B PE=1 SV=1)

HSP 1 Score: 210.7 bits (535), Expect = 9.1e-54
Identity = 105/109 (96.33%), Postives = 109/109 (100.00%), Query Frame = 0


Query: 10  HVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGG 69
           HVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDV+QRCKELGITA+H+KLRATGG
Sbjct: 42  HVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVAQRCKELGITAMHVKLRATGG 101

Query: 70  NKTKTPGPGAQSALRALARSGMRIGRIEDVTPIPTDSTRRKGGRRGRRL 119
           NKTKTPGPGAQSALRALARSGM+IGRIEDVTPIPTDSTRRKGGRRGRRL
Sbjct: 102 NKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPTDSTRRKGGRRGRRL 150

[Close]

BLAST of Cucsat.G18595 vs. ExPASy Swiss-Prot
Match: P42036 (40S ribosomal protein S14-3 OS=Arabidopsis thaliana OX=3702 GN=RPS14C PE=2 SV=2)

HSP 1 Score: 210.7 bits (535), Expect = 9.1e-54
Identity = 105/109 (96.33%), Postives = 109/109 (100.00%), Query Frame = 0


Query: 10  HVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGG 69
           HVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDV+QRCKELGITA+H+KLRATGG
Sbjct: 42  HVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVAQRCKELGITAIHVKLRATGG 101

Query: 70  NKTKTPGPGAQSALRALARSGMRIGRIEDVTPIPTDSTRRKGGRRGRRL 119
           NKTKTPGPGAQSALRALARSGM+IGRIEDVTPIPTDSTRRKGGRRGRRL
Sbjct: 102 NKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPTDSTRRKGGRRGRRL 150

[Close]

BLAST of Cucsat.G18595 vs. ExPASy Swiss-Prot
Match: P19951 (40S ribosomal protein S14 OS=Zea mays OX=4577 PE=3 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 1.2e-53
Identity = 105/109 (96.33%), Postives = 109/109 (100.00%), Query Frame = 0


Query: 10  HVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGG 69
           HVTDLSGRETLVRITGGMKVKADRDESSPYAAMLA+QDV+QRCKELGITALHIKLRATGG
Sbjct: 42  HVTDLSGRETLVRITGGMKVKADRDESSPYAAMLASQDVAQRCKELGITALHIKLRATGG 101

Query: 70  NKTKTPGPGAQSALRALARSGMRIGRIEDVTPIPTDSTRRKGGRRGRRL 119
           NKTKTPGPGAQSALRALARSGM+IGRIEDVTP+PTDSTRRKGGRRGRRL
Sbjct: 102 NKTKTPGPGAQSALRALARSGMKIGRIEDVTPVPTDSTRRKGGRRGRRL 150

[Close]

BLAST of Cucsat.G18595 vs. NCBI nr
Match: BBH07613.1 (Ribosomal protein S11 family protein [Prunus dulcis])

HSP 1 Score: 214 bits (546), Expect = 7.07e-70
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 0


Query: 10  HVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGG 69
           HVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGG
Sbjct: 4   HVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGG 63

Query: 70  NKTKTPGPGAQSALRALARSGMRIGRIEDVTPIPTDSTRRKGGRRGRRL 118
           NKTKTPGPGAQSALRALARSGMRIGRIEDVTPIPTDSTRRKGGRRGRRL
Sbjct: 64  NKTKTPGPGAQSALRALARSGMRIGRIEDVTPIPTDSTRRKGGRRGRRL 112

[Close]

BLAST of Cucsat.G18595 vs. NCBI nr
Match: KAG5521111.1 (hypothetical protein RHGRI_033617 [Rhododendron griersonianum])

HSP 1 Score: 216 bits (551), Expect = 7.21e-70
Identity = 109/118 (92.37%), Postives = 115/118 (97.46%), Query Frame = 0


Query: 1   MMTLLFQQQHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITAL 60
           ++T++F  QHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDV+QRCKELGI AL
Sbjct: 49  LITVVFMLQHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVTQRCKELGINAL 108

Query: 61  HIKLRATGGNKTKTPGPGAQSALRALARSGMRIGRIEDVTPIPTDSTRRKGGRRGRRL 118
           HIKLRATGGNKTKTPGPGAQSALRALARSGM+IGRIEDVTPIPTDSTRRKGGRRGRRL
Sbjct: 109 HIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPTDSTRRKGGRRGRRL 166

[Close]

BLAST of Cucsat.G18595 vs. NCBI nr
Match: PPD96271.1 (hypothetical protein GOBAR_DD06706 [Gossypium barbadense])

HSP 1 Score: 214 bits (546), Expect = 9.79e-70
Identity = 108/110 (98.18%), Postives = 110/110 (100.00%), Query Frame = 0


Query: 9   QHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATG 68
           QHVTDLSGRET+VRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATG
Sbjct: 13  QHVTDLSGRETMVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATG 72

Query: 69  GNKTKTPGPGAQSALRALARSGMRIGRIEDVTPIPTDSTRRKGGRRGRRL 118
           GNKTKTPGPGAQSALRALARSGM+IGRIEDVTPIPTDSTRRKGGRRGRRL
Sbjct: 73  GNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPTDSTRRKGGRRGRRL 122

[Close]

BLAST of Cucsat.G18595 vs. NCBI nr
Match: MBA0558358.1 (hypothetical protein [Gossypium lobatum])

HSP 1 Score: 214 bits (546), Expect = 1.19e-69
Identity = 108/110 (98.18%), Postives = 110/110 (100.00%), Query Frame = 0


Query: 9   QHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATG 68
           QHVTDLSGRET+VRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATG
Sbjct: 7   QHVTDLSGRETMVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATG 66

Query: 69  GNKTKTPGPGAQSALRALARSGMRIGRIEDVTPIPTDSTRRKGGRRGRRL 118
           GNKTKTPGPGAQSALRALARSGM+IGRIEDVTPIPTDSTRRKGGRRGRRL
Sbjct: 67  GNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPTDSTRRKGGRRGRRL 116

[Close]

BLAST of Cucsat.G18595 vs. NCBI nr
Match: GFQ04872.1 (40S ribosomal protein s14 [Phtheirospermum japonicum])

HSP 1 Score: 214 bits (544), Expect = 1.74e-69
Identity = 108/113 (95.58%), Postives = 111/113 (98.23%), Query Frame = 0


Query: 6   FQQQHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLR 65
           F  +HVTDLSGRET+VRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLR
Sbjct: 6   FLIEHVTDLSGRETMVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLR 65

Query: 66  ATGGNKTKTPGPGAQSALRALARSGMRIGRIEDVTPIPTDSTRRKGGRRGRRL 118
           ATGGNKTKTPGPGAQSALRALARSGM+IGRIEDVTPIPTDSTRRKGGRRGRRL
Sbjct: 66  ATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPTDSTRRKGGRRGRRL 118

[Close]

BLAST of Cucsat.G18595 vs. ExPASy TrEMBL
Match: A0A0A0LUH7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G448960 PE=3 SV=1)

HSP 1 Score: 230 bits (587), Expect = 2.32e-76
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 0


Query: 1   MMTLLFQQQHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITAL 60
           MMTLLFQQQHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITAL
Sbjct: 1   MMTLLFQQQHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITAL 60

Query: 61  HIKLRATGGNKTKTPGPGAQSALRALARSGMRIGRIEDVTPIPTDSTRRKGGRRGRRL 118
           HIKLRATGGNKTKTPGPGAQSALRALARSGMRIGRIEDVTPIPTDSTRRKGGRRGRRL
Sbjct: 61  HIKLRATGGNKTKTPGPGAQSALRALARSGMRIGRIEDVTPIPTDSTRRKGGRRGRRL 118

[Close]

BLAST of Cucsat.G18595 vs. ExPASy TrEMBL
Match: A0A2P2LKL4 (Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=3 SV=1)

HSP 1 Score: 216 bits (549), Expect = 2.01e-70
Identity = 110/116 (94.83%), Postives = 112/116 (96.55%), Query Frame = 0


Query: 3   TLLFQQQHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHI 62
           T+    QHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDV+QRCKELGITALHI
Sbjct: 13  TVTLGPQHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVAQRCKELGITALHI 72

Query: 63  KLRATGGNKTKTPGPGAQSALRALARSGMRIGRIEDVTPIPTDSTRRKGGRRGRRL 118
           KLRATGGNKTKTPGPGAQSALRALARSGMRIGRIEDVTPIPTDSTRRKGGRRGRRL
Sbjct: 73  KLRATGGNKTKTPGPGAQSALRALARSGMRIGRIEDVTPIPTDSTRRKGGRRGRRL 128

[Close]

BLAST of Cucsat.G18595 vs. ExPASy TrEMBL
Match: A0A4Y1RV42 (Ribosomal protein S11 family protein OS=Prunus dulcis OX=3755 GN=Prudu_019594 PE=3 SV=1)

HSP 1 Score: 214 bits (546), Expect = 3.43e-70
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 0


Query: 10  HVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGG 69
           HVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGG
Sbjct: 4   HVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGG 63

Query: 70  NKTKTPGPGAQSALRALARSGMRIGRIEDVTPIPTDSTRRKGGRRGRRL 118
           NKTKTPGPGAQSALRALARSGMRIGRIEDVTPIPTDSTRRKGGRRGRRL
Sbjct: 64  NKTKTPGPGAQSALRALARSGMRIGRIEDVTPIPTDSTRRKGGRRGRRL 112

[Close]

BLAST of Cucsat.G18595 vs. ExPASy TrEMBL
Match: A0A7J8M0W2 (Uncharacterized protein OS=Gossypium lobatum OX=34289 GN=Golob_015380 PE=3 SV=1)

HSP 1 Score: 214 bits (546), Expect = 5.77e-70
Identity = 108/110 (98.18%), Postives = 110/110 (100.00%), Query Frame = 0


Query: 9   QHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATG 68
           QHVTDLSGRET+VRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATG
Sbjct: 7   QHVTDLSGRETMVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATG 66

Query: 69  GNKTKTPGPGAQSALRALARSGMRIGRIEDVTPIPTDSTRRKGGRRGRRL 118
           GNKTKTPGPGAQSALRALARSGM+IGRIEDVTPIPTDSTRRKGGRRGRRL
Sbjct: 67  GNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPTDSTRRKGGRRGRRL 116

[Close]

BLAST of Cucsat.G18595 vs. ExPASy TrEMBL
Match: K3Y062 (Uncharacterized protein OS=Setaria italica OX=4555 GN=101772286 PE=3 SV=1)

HSP 1 Score: 214 bits (544), Expect = 6.69e-70
Identity = 107/110 (97.27%), Postives = 110/110 (100.00%), Query Frame = 0


Query: 9   QHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATG 68
           QHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDV+QRCKELGITALHIKLRATG
Sbjct: 2   QHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATG 61

Query: 69  GNKTKTPGPGAQSALRALARSGMRIGRIEDVTPIPTDSTRRKGGRRGRRL 118
           GNKTKTPGPGAQSALRALARSGM+IGRIEDVTP+PTDSTRRKGGRRGRRL
Sbjct: 62  GNKTKTPGPGAQSALRALARSGMKIGRIEDVTPVPTDSTRRKGGRRGRRL 111

The following BLAST results are available for this feature:

BLAST of Cucsat.G18595 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P19950	5.3e-54	97.25	40S ribosomal protein S14 OS=Zea mays OX=4577 PE=3 SV=1	[more]
Q9SIH0	9.1e-54	96.33	40S ribosomal protein S14-1 OS=Arabidopsis thaliana OX=3702 GN=RPS14A PE=1 SV=1	[more]
Q9CAX6	9.1e-54	96.33	40S ribosomal protein S14-2 OS=Arabidopsis thaliana OX=3702 GN=RPS14B PE=1 SV=1	[more]
P42036	9.1e-54	96.33	40S ribosomal protein S14-3 OS=Arabidopsis thaliana OX=3702 GN=RPS14C PE=2 SV=2	[more]
P19951	1.2e-53	96.33	40S ribosomal protein S14 OS=Zea mays OX=4577 PE=3 SV=1	[more]

BLAST of Cucsat.G18595 vs. NCBI nr


Match Name	E-value	Identity	Description
BBH07613.1	7.07e-70	100.00	Ribosomal protein S11 family protein [Prunus dulcis]	[more]
KAG5521111.1	7.21e-70	92.37	hypothetical protein RHGRI_033617 [Rhododendron griersonianum]	[more]
PPD96271.1	9.79e-70	98.18	hypothetical protein GOBAR_DD06706 [Gossypium barbadense]	[more]
MBA0558358.1	1.19e-69	98.18	hypothetical protein [Gossypium lobatum]	[more]
GFQ04872.1	1.74e-69	95.58	40S ribosomal protein s14 [Phtheirospermum japonicum]	[more]

BLAST of Cucsat.G18595 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LUH7	2.32e-76	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G448960 PE=3 SV=1	[more]
A0A2P2LKL4	2.01e-70	94.83	Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=3 SV=1	[more]
A0A4Y1RV42	3.43e-70	100.00	Ribosomal protein S11 family protein OS=Prunus dulcis OX=3755 GN=Prudu_019594 PE...	[more]
A0A7J8M0W2	5.77e-70	98.18	Uncharacterized protein OS=Gossypium lobatum OX=34289 GN=Golob_015380 PE=3 SV=1	[more]
K3Y062	6.69e-70	97.27	Uncharacterized protein OS=Setaria italica OX=4555 GN=101772286 PE=3 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 116..118
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 97..118
None	No IPR available	PANTHER	PTHR11759:SF37	BNAA05G27530D PROTEIN	coord: 10..118
None	No IPR available	SUPERFAMILY	53137	Translational machinery components	coord: 10..116
IPR001971	Ribosomal protein S11	PIRSF	PIRSF002131	RPS11p_RPS11a_RPS14e_RPS11o	coord: 8..115 e-value: 2.0E-27 score: 93.7
IPR001971	Ribosomal protein S11	PFAM	PF00411	Ribosomal_S11	coord: 10..114 e-value: 1.0E-38 score: 132.1
IPR001971	Ribosomal protein S11	PANTHER	PTHR11759	40S RIBOSOMAL PROTEIN S14/30S RIBOSOMAL PROTEIN S11	coord: 10..118
IPR001971	Ribosomal protein S11	HAMAP	MF_01310	Ribosomal_S11	coord: 1..115 score: 13.724579
IPR036967	Ribosomal protein S11 superfamily	GENE3D	3.30.420.80	Ribosomal protein S11	coord: 8..118 e-value: 9.9E-53 score: 180.1
IPR018102	Ribosomal S11, conserved site	PROSITE	PS00054	RIBOSOMAL_S11	coord: 83..105

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsat.G18595.T10	Cucsat.G18595.T10	mRNA
Cucsat.G18595.T1	Cucsat.G18595.T1	mRNA
Cucsat.G18595.T8	Cucsat.G18595.T8	mRNA
Cucsat.G18595.T5	Cucsat.G18595.T5	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000462	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
biological_process	GO:0000028	ribosomal small subunit assembly
biological_process	GO:0006412	translation
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005840	ribosome
molecular_function	GO:0048027	mRNA 5'-UTR binding
molecular_function	GO:0070181	small ribosomal subunit rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome