Cucsat.G18573 (gene) Cucumber (B10) v3

Overview


Name	Cucsat.G18573
Type	gene
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	RAB GTPase homolog A1C
Location	ctg3379: 1195328 .. 1198659 (-)
RNA-Seq Expression	Cucsat.G18573
Synteny	Cucsat.G18573

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAATAAATTCCCAAATCCAAAATTTTGAAAAAGAGACGTGTCTTTCTCCTCTTCCTCATCCTCATCCACCTTCTCTTTGGAGTCCAGCCCAGCAAGACACACAGCGGTCTTTCCCATTTCCATTTCACAATCTCGAAACAACAAGATCAAAAATCCACCCCCCAAAAAGCGCACATTCTGAGATCTACCTATTTCCCCATTTCTTTTTCTCTTACTCCAACCAAAGTTCTTCTTCAGAAGGGGAACTCCGATGGCTGGTTACAGAGCTGAAGATGACTACGATTACCTCTTTAAGGTGGTTTTGATTGGAGATTCCGGTGTGGGCAAGTCCAATTTGCTCTCAAGGTTCACCAAAAACGAGTTTAGCCTCGAGTCCAAGTCCACCATTGGGGTTGAGTTTGCTACTCGGAGTTTGAATGTTGATGGCAAGGTTGTCAAGGCTCAGATTTGGGATACTGCTGGCCAGGAAAGGTTCGAAACTGTTTCTCTTTCTTATGCTTTCCCTTTTTCAAGATCTGGGTGTTTCTTATTTTTACTCTAGTTTTGGTGTTGTTTGGTGTTTTAATCGCGAATCAAGATTTTTGGGTAGTGCTGTTGTTTTGATGATTTTGCTGATGGAATTGTTTTTTTGTTAGCTTCTATAGAGTGGGTGGTATAATGTGAAATTTATGATGGGTTACATAATAAATCTCTTTCTGCATTCACTTAATTAGAGTTTTGGACTTTAGAACCGAGATGGTAGCTTACAAATTTAGTGGATCTGGACAATGCTGCTTCGAGTTGCTTGTCTGGTTACACCTTAAATAAATTGACGTACAAGAATGATTAGAATTCCTTAATTCTGTAGGAATTGAGAAATATTTGGAAGAGAAGTAGAGTGACAGATTTTAGTACGCTGTTATACAACTTAGAGAAACTTTTTTAGAGAGCTTAGGCATAGCATCACAAAGACTCCTAGAACTGTTGCAACGTCTGAATGTTGTCTCTTACTTGAATTTTCCTCCTGAATGAAGGCTGTTGATTCTGTTAAGTGAATTTTTTCATAATCTGTTTTGTGAATTTTTTTCATGATTAGAAATGACTTCAAGTAATGCTGAGACCTGTTCAAACACGCTAGTCATTAGATTCTGTAGTTTTCCGAGTTTGGACCCTGAGAAAAAAAAAAGGTAGTTCTGTTAAAAATGGAAGAACATTTCTACTTTTGTAAGTTTGTTTCTATACTGGATATATGAAGTTCCATAGTAGGTTCATTGGAAACATTTCATACTAGGAATCAAGATTGACATGATAACTACGAAATTAGACTTTAAAGTTTCAGTATCTCGACCCAAACATATATTGATGTGCTTTATCAGTTGTTATTGCTGAAAAGTTTAGTAGTCATCCATGATTTCTTCTAATCATGGGCATAGAAATGGATATTCATGCCTTAACAGTATATCCCAACACAAGTGTGACGCACATTATTTTTCCTTCTTTATTTAATAAATATGAACATATCTTTCGACTACCATGGATCTCCTATCGGTCAAGCCATAAGTTACAAAACTAGATAGATGCTTTTGAAGTATGGAATCGAACCATGATAGTCCCAAATTTCTTAATGCATTTGCAAAGATATACATATTTTTCTTTTGATTTTCTTTTCAATGATACAGAATGCAAGTATAGGCAGTCCAGACCGCTAGTGTTAGGACATATACATTCTTGGTTCTTAGTTTTTTTCATTGCATAACCCAATGCTGATCTACTACTCCCTTTCTCTTTCTCCTCATATATTTTGCTTACAAAAATCTTGTCTGCATCTGTGCACATGTCCGCAAAGTCAACCTACTTATTATCCACTCTTCATATTCTTCCTCTTTCTCTCAACTTTATGAGATCTGGACTCTTGGGTGACTATGTCATTAGCCTTTTATCAGGTTTAGTATTAGATTTCTCAAAAATGAACATGTCTGCAGTTTTCTTTTTCATCACAAGTTACGTTTTATCCTTGGTACATTTCATATTTGGAGGAAGTCCATGTCCTGTGCATGTTTGTCAGTATCAAGTATTCATTCTGCCTCTACAGAGGTGCAAAGGATTCCTCGTTTTTCGATGTAAAGAAAATAACATAATGTAGGATAGCTTATCCTGTGTTGCTCAAAGGAAATTCTGGTTTATTTTTTTATTCCAGTGATTGAGTAGCATTCCATGATATCCCTTTATTTGTTTCAGACTTCTTAAGAATGTTTTGTAATTGATAACTTCAAGTACTAACCTGAAAACGGAACAAACCAGTATATTGTATTTCTGCCCTTTTCTGTGTTAGAAATGGAGAAAGAGCTATATTGTAAACAAGATTCATTTGCTGCTTCAATGCTTTAGCTGATCATATGTGAGGTTTGTTTTAATGTTGCATCGACTAGCTTTTCCAATTCATCCTCTGAATCATAAAGTTTCTTTAGTATGCTCTGTTTTATGTCTTGTTTATAATAGAATCTTAAAGTCAATCACACACTTTCCTGTCTCATTCTTTCTGTGGATTAACCATCTCTTTTGGGATTTGTAGGTATCGTGCGATAACTAGTGCTTACTATCGAGGTGCTGTTGGTGCACTCCTTGTCTACGATGTCACACGACATTCCACTTTTGAAAATGTCGAGAGGTGGTTAAGGGAGTTGCGAGACCATACCGATCCTAACATTGTGGTCATGCTTGTTGGTAACAAATCAGATCTTCGACACCTGGTGGCAGTCTCAACAGAGGATGGGAAATCTTTTGCTGAGAAGGAGTCTCTCTATTTTATGGAGACTTCTGCACTGGAAGCAACCAATGTCGAGAACTCATTCGCTGAAGTCCTTACTCAAATTTATCACATTGTAAGCAAGAAGGCAATGGAGGCTGGTGATGGCACTGCTGCTGCTTCCGTTCCTCCGAAAGGAGAGAAAATCGATGTCAGTAAGGATGTTTCTGCTGTAAAGAAAGCTGGCTGCTGTTCGAGTTAGGCTTTAATTTGCACTTTTTTTGATGTAGCTGATTTGATACTGCTGCATCCTTATGTGCAACATAGTTGAGTAGAAATTCTAAAGAGATGTGTTCAATAGGATATGGATATTCCCTGGATTGAATTTTATTTACTTTCCAATATATTTTAGTTTGAAAGTTTAAGTTTGAGCTCAGATAGCCTTTTTATGAACTTAGCAAAAAAGAATATATGCATTAAATCTCTATTGGTTTCACTTAGGCGTTTGTTAATTCTTAACACTGCACCAAATTCAGATTTTCGTTTTAATCTTATTGAAATTTTATTCCCATTGATGTATCAACAGGTAGTATGTCTAATATACTTT

Coding sequence (CDS)

ATGGCTGGTTACAGAGCTGAAGATGACTACGATTACCTCTTTAAGGTGGTTTTGATTGGAGATTCCGGTGTGGGCAAGTCCAATTTGCTCTCAAGGTTCACCAAAAACGAGTTTAGCCTCGAGTCCAAGTCCACCATTGGGGTTGAGTTTGCTACTCGGAGTTTGAATGTTGATGGCAAGGTTGTCAAGGCTCAGATTTGGGATACTGCTGGCCAGGAAAGGTATCGTGCGATAACTAGTGCTTACTATCGAGGTGCTGTTGGTGCACTCCTTGTCTACGATGTCACACGACATTCCACTTTTGAAAATGTCGAGAGGTGGTTAAGGGAGTTGCGAGACCATACCGATCCTAACATTGTGGTCATGCTTGTTGGTAACAAATCAGATCTTCGACACCTGGTGGCAGTCTCAACAGAGGATGGGAAATCTTTTGCTGAGAAGGAGTCTCTCTATTTTATGGAGACTTCTGCACTGGAAGCAACCAATGTCGAGAACTCATTCGCTGAAGTCCTTACTCAAATTTATCACATTGTAAGCAAGAAGGCAATGGAGGCTGGTGATGGCACTGCTGCTGCTTCCGTTCCTCCGAAAGGAGAGAAAATCGATGTCAGTAAGGATGTTTCTGCTGTAAAGAAAGCTGGCTGCTGTTCGAGTTAG

Protein sequence

MAGYRAEDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSLNVDGKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLVGNKSDLRHLVAVSTEDGKSFAEKESLYFMETSALEATNVENSFAEVLTQIYHIVSKKAMEAGDGTAAASVPPKGEKIDVSKDVSAVKKAGCCSS

Homology

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BLAST of Cucsat.G18573 vs. ExPASy Swiss-Prot
Match: Q9FK68 (Ras-related protein RABA1c OS=Arabidopsis thaliana OX=3702 GN=RABA1C PE=1 SV=1)

HSP 1 Score: 381.3 bits (978), Expect = 7.2e-105
Identity = 194/218 (88.99%), Postives = 207/218 (94.95%), Query Frame = 0


Query: 1   MAGYRAEDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSLNVDGK 60
           MAGYRA+D+YDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSLNVD K
Sbjct: 1   MAGYRADDEYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSLNVDDK 60

Query: 61  VVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIV 120
           V+KAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVE WL+ELR+HTDPNIV
Sbjct: 61  VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVETWLKELRNHTDPNIV 120

Query: 121 VMLVGNKSDLRHLVAVSTEDGKSFAEKESLYFMETSALEATNVENSFAEVLTQIYHIVSK 180
           VMLVGNKSDLRHLVAV TED KSFAEKESLYFMETSALEATNVEN+FAEVLTQI+HIVSK
Sbjct: 121 VMLVGNKSDLRHLVAVQTEDAKSFAEKESLYFMETSALEATNVENAFAEVLTQIHHIVSK 180

Query: 181 KAMEAGDGTAAASVPPKGEKIDVSKDVSAVKKAGCCSS 219
           KAMEA   + +A+VP KG+KID+ KDVSAVKK GCCS+
Sbjct: 181 KAMEA--ASESANVPSKGDKIDIGKDVSAVKKGGCCSN 216

[Close]

BLAST of Cucsat.G18573 vs. ExPASy Swiss-Prot
Match: Q9SN35 (Ras-related protein RABA1d OS=Arabidopsis thaliana OX=3702 GN=RABA1D PE=1 SV=1)

HSP 1 Score: 378.3 bits (970), Expect = 6.1e-104
Identity = 194/218 (88.99%), Postives = 206/218 (94.50%), Query Frame = 0


Query: 1   MAGYRAEDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSLNVDGK 60
           MAGYRA+DDYDYLFKVVLIGDSGVGKSNLLSRFT+NEFSLESKSTIGVEFATRSLNV+ K
Sbjct: 1   MAGYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVNEK 60

Query: 61  VVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIV 120
           V+KAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIV
Sbjct: 61  VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIV 120

Query: 121 VMLVGNKSDLRHLVAVSTEDGKSFAEKESLYFMETSALEATNVENSFAEVLTQIYHIVSK 180
           VMLVGNKSDLRHLVAV TED KSFAE ESLYFMETSALE+TNVEN+F+EVLTQIYH+VSK
Sbjct: 121 VMLVGNKSDLRHLVAVQTEDAKSFAENESLYFMETSALESTNVENAFSEVLTQIYHVVSK 180

Query: 181 KAMEAGDGTAAASVPPKGEKIDVSKDVSAVKKAGCCSS 219
           KAMEAG+   + +VP KGEKIDV  DVSAVKK GCCS+
Sbjct: 181 KAMEAGED--SGNVPSKGEKIDV--DVSAVKKTGCCSN 214

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BLAST of Cucsat.G18573 vs. ExPASy Swiss-Prot
Match: P40393 (Ras-related protein RIC2 OS=Oryza sativa subsp. japonica OX=39947 GN=RIC2 PE=2 SV=2)

HSP 1 Score: 375.6 bits (963), Expect = 3.9e-103
Identity = 191/216 (88.43%), Postives = 204/216 (94.44%), Query Frame = 0


Query: 2   AGYRAEDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSLNVDGKV 61
           AGYRAEDDYDYLFKVVLIGDSGVGKSNLLSRFT+NEFSLESKSTIGVEFATRSL VDGKV
Sbjct: 3   AGYRAEDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLQVDGKV 62

Query: 62  VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVV 121
           VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWL+ELRDHTDPNIVV
Sbjct: 63  VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLKELRDHTDPNIVV 122

Query: 122 MLVGNKSDLRHLVAVSTEDGKSFAEKESLYFMETSALEATNVENSFAEVLTQIYHIVSKK 181
           MLVGNKSDLRHLVAV T++GK+FAE+ESLYFMETSALE+TNVEN+FAEVLTQIY IVSK+
Sbjct: 123 MLVGNKSDLRHLVAVQTDEGKAFAERESLYFMETSALESTNVENAFAEVLTQIYRIVSKR 182

Query: 182 AMEAGDGTAAASVPPKGEKIDVSKDVSAVKKAGCCS 218
           ++EAGD   A S P KGEKI++  DVSAVKK GCCS
Sbjct: 183 SVEAGDD--AGSGPGKGEKINIKDDVSAVKKGGCCS 216

[Close]

BLAST of Cucsat.G18573 vs. ExPASy Swiss-Prot
Match: Q39222 (Ras-related protein RABA1b OS=Arabidopsis thaliana OX=3702 GN=RABA1B PE=1 SV=1)

HSP 1 Score: 360.1 bits (923), Expect = 1.7e-98
Identity = 185/219 (84.47%), Postives = 202/219 (92.24%), Query Frame = 0


Query: 1   MAGYRAEDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSLNVDGK 60
           MAGYR EDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEF+LESKSTIGVEFATR+L VDGK
Sbjct: 1   MAGYRVEDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRTLKVDGK 60

Query: 61  VVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIV 120
           VVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTR +TFENV+RWL+EL++HTDPNIV
Sbjct: 61  VVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRATFENVDRWLKELKNHTDPNIV 120

Query: 121 VMLVGNKSDLRHLVAVSTEDGKSFAEKESLYFMETSALEATNVENSFAEVLTQIYHIVSK 180
           VMLVGNKSDLRHL+AV TEDGKS+AE+ESL FMETSALEATNVE++FAEVLTQIY I SK
Sbjct: 121 VMLVGNKSDLRHLLAVPTEDGKSYAEQESLCFMETSALEATNVEDAFAEVLTQIYRITSK 180

Query: 181 KAMEAG-DGTAAASVPPKGEKIDVSKDVSAVKKAGCCSS 219
           K +EAG DG A+    PKGEKI+V  DVSA+KK GCCS+
Sbjct: 181 KQVEAGEDGNASV---PKGEKIEVKNDVSALKKLGCCSN 216

[Close]

BLAST of Cucsat.G18573 vs. ExPASy Swiss-Prot
Match: Q01111 (Ras-related protein YPT3 OS=Nicotiana plumbaginifolia OX=4092 GN=YPT3 PE=2 SV=1)

HSP 1 Score: 360.1 bits (923), Expect = 1.7e-98
Identity = 178/218 (81.65%), Postives = 198/218 (90.83%), Query Frame = 0


Query: 1   MAGYRAEDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSLNVDGK 60
           MAGYRA+D+YDYLFK+VLIGDSGVGKSNLLSRFTKNEF+LESKSTIGVEFAT+SLN+D K
Sbjct: 1   MAGYRADDEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKSLNIDNK 60

Query: 61  VVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIV 120
           V+KAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRH T+ENV RWL+ELRDHTDPNIV
Sbjct: 61  VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTYENVTRWLKELRDHTDPNIV 120

Query: 121 VMLVGNKSDLRHLVAVSTEDGKSFAEKESLYFMETSALEATNVENSFAEVLTQIYHIVSK 180
           VML+GNKSDLRHLVAVST++ K  AE+E LYFMETSALEATNVEN+F E LTQIY IVSK
Sbjct: 121 VMLIGNKSDLRHLVAVSTDEAKGLAEREGLYFMETSALEATNVENAFTEALTQIYRIVSK 180

Query: 181 KAMEAGDGTAAASVPPKGEKIDVSKDVSAVKKAGCCSS 219
           KA+EAGD  A +S PPKGE I++  + S+ KK GCCSS
Sbjct: 181 KAVEAGDEGATSSAPPKGETINIKDEGSSWKKFGCCSS 218

[Close]

BLAST of Cucsat.G18573 vs. NCBI nr
Match: XP_004147386.1 (ras-related protein RABA1c [Cucumis sativus] >XP_008443508.1 PREDICTED: ras-related protein RABA1c [Cucumis melo] >KAA0057060.1 ras-related protein RABA1c [Cucumis melo var. makuwa] >KGN65606.1 hypothetical protein Csa_019938 [Cucumis sativus])

HSP 1 Score: 428 bits (1100), Expect = 5.40e-151
Identity = 218/218 (100.00%), Postives = 218/218 (100.00%), Query Frame = 0


Query: 1   MAGYRAEDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSLNVDGK 60
           MAGYRAEDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSLNVDGK
Sbjct: 1   MAGYRAEDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSLNVDGK 60

Query: 61  VVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIV 120
           VVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIV
Sbjct: 61  VVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIV 120

Query: 121 VMLVGNKSDLRHLVAVSTEDGKSFAEKESLYFMETSALEATNVENSFAEVLTQIYHIVSK 180
           VMLVGNKSDLRHLVAVSTEDGKSFAEKESLYFMETSALEATNVENSFAEVLTQIYHIVSK
Sbjct: 121 VMLVGNKSDLRHLVAVSTEDGKSFAEKESLYFMETSALEATNVENSFAEVLTQIYHIVSK 180

Query: 181 KAMEAGDGTAAASVPPKGEKIDVSKDVSAVKKAGCCSS 218
           KAMEAGDGTAAASVPPKGEKIDVSKDVSAVKKAGCCSS
Sbjct: 181 KAMEAGDGTAAASVPPKGEKIDVSKDVSAVKKAGCCSS 218

[Close]

BLAST of Cucsat.G18573 vs. NCBI nr
Match: XP_038895845.1 (ras-related protein RABA1c [Benincasa hispida])

HSP 1 Score: 421 bits (1082), Expect = 3.00e-148
Identity = 214/218 (98.17%), Postives = 215/218 (98.62%), Query Frame = 0


Query: 1   MAGYRAEDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSLNVDGK 60
           MAGYRAEDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSLNVDGK
Sbjct: 1   MAGYRAEDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSLNVDGK 60

Query: 61  VVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIV 120
           VVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIV
Sbjct: 61  VVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIV 120

Query: 121 VMLVGNKSDLRHLVAVSTEDGKSFAEKESLYFMETSALEATNVENSFAEVLTQIYHIVSK 180
           VMLVGNKSDLRHLVAVSTEDGKSFAEKESLYFMETSALEATNVENSFAEVLTQIYHIVSK
Sbjct: 121 VMLVGNKSDLRHLVAVSTEDGKSFAEKESLYFMETSALEATNVENSFAEVLTQIYHIVSK 180

Query: 181 KAMEAGDGTAAASVPPKGEKIDVSKDVSAVKKAGCCSS 218
           KAMEAGDG AAAS+P KGEKIDV KDVSAVKKAGCCSS
Sbjct: 181 KAMEAGDGAAAASIPSKGEKIDVGKDVSAVKKAGCCSS 218

[Close]

BLAST of Cucsat.G18573 vs. NCBI nr
Match: XP_022954901.1 (ras-related protein RABA1c [Cucurbita moschata] >XP_023541694.1 ras-related protein RABA1c [Cucurbita pepo subsp. pepo] >KAG6573325.1 Ras-related protein RABA1c, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 411 bits (1056), Expect = 2.76e-144
Identity = 209/218 (95.87%), Postives = 212/218 (97.25%), Query Frame = 0


Query: 1   MAGYRAEDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSLNVDGK 60
           MAGYRAEDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSLNVD K
Sbjct: 1   MAGYRAEDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSLNVDSK 60

Query: 61  VVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIV 120
           VVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIV
Sbjct: 61  VVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIV 120

Query: 121 VMLVGNKSDLRHLVAVSTEDGKSFAEKESLYFMETSALEATNVENSFAEVLTQIYHIVSK 180
           VMLVGNKSDLRHLVAVSTEDGKSFAEKESLY+METSALEATNVEN+FAEVLTQIYHIVSK
Sbjct: 121 VMLVGNKSDLRHLVAVSTEDGKSFAEKESLYYMETSALEATNVENAFAEVLTQIYHIVSK 180

Query: 181 KAMEAGDGTAAASVPPKGEKIDVSKDVSAVKKAGCCSS 218
           KAMEAG+  AAASVP KGEKIDV KDVSAVKK GCCSS
Sbjct: 181 KAMEAGEDAAAASVPSKGEKIDVGKDVSAVKKGGCCSS 218

[Close]

BLAST of Cucsat.G18573 vs. NCBI nr
Match: XP_022927164.1 (ras-related protein RABA1c-like [Cucurbita moschata] >XP_022927165.1 ras-related protein RABA1c-like [Cucurbita moschata] >XP_023518969.1 ras-related protein RABA1c-like [Cucurbita pepo subsp. pepo] >XP_023522873.1 ras-related protein RABA1c-like [Cucurbita pepo subsp. pepo] >KAG7019559.1 Ras-related protein RABA1c, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 410 bits (1055), Expect = 4.06e-144
Identity = 210/219 (95.89%), Postives = 214/219 (97.72%), Query Frame = 0


Query: 1   MAGYRAEDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSLNVDGK 60
           MAGYRAEDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSLNVD K
Sbjct: 1   MAGYRAEDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSLNVDSK 60

Query: 61  VVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIV 120
           V+KAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIV
Sbjct: 61  VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIV 120

Query: 121 VMLVGNKSDLRHLVAVSTEDGKSFAEKESLYFMETSALEATNVENSFAEVLTQIYHIVSK 180
           VMLVGNKSDLRHLVAVSTEDGKSFAEKESLYFMETSALEATNVENSFAEVLTQIYHIVSK
Sbjct: 121 VMLVGNKSDLRHLVAVSTEDGKSFAEKESLYFMETSALEATNVENSFAEVLTQIYHIVSK 180

Query: 181 KAMEAGDGTAAAS-VPPKGEKIDVSKDVSAVKKAGCCSS 218
           K+MEAGDG AAA+ VP KG+KIDV KDVSAVKKAGCCSS
Sbjct: 181 KSMEAGDGAAAAATVPSKGDKIDVGKDVSAVKKAGCCSS 219

[Close]

BLAST of Cucsat.G18573 vs. NCBI nr
Match: XP_023001179.1 (ras-related protein RABA1c-like [Cucurbita maxima])

HSP 1 Score: 410 bits (1054), Expect = 5.98e-144
Identity = 210/220 (95.45%), Postives = 214/220 (97.27%), Query Frame = 0


Query: 1   MAGYRAEDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSLNVDGK 60
           MAGYRAEDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSLNVD K
Sbjct: 1   MAGYRAEDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSLNVDSK 60

Query: 61  VVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIV 120
           V+KAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIV
Sbjct: 61  VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIV 120

Query: 121 VMLVGNKSDLRHLVAVSTEDGKSFAEKESLYFMETSALEATNVENSFAEVLTQIYHIVSK 180
           VMLVGNKSDLRHLVAVSTEDGKSFAEKESLYFMETSALEATNVENSFAEVLTQIYHIVSK
Sbjct: 121 VMLVGNKSDLRHLVAVSTEDGKSFAEKESLYFMETSALEATNVENSFAEVLTQIYHIVSK 180

Query: 181 KAMEAGDGTAAAS--VPPKGEKIDVSKDVSAVKKAGCCSS 218
           K+MEAGDG AAA+  VP KG+KIDV KDVSAVKKAGCCSS
Sbjct: 181 KSMEAGDGAAAAAATVPSKGDKIDVGKDVSAVKKAGCCSS 220

[Close]

BLAST of Cucsat.G18573 vs. ExPASy TrEMBL
Match: A0A5A7UPM0 (Ras-related protein RABA1c OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold96G002480 PE=4 SV=1)

HSP 1 Score: 428 bits (1100), Expect = 2.61e-151
Identity = 218/218 (100.00%), Postives = 218/218 (100.00%), Query Frame = 0


Query: 1   MAGYRAEDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSLNVDGK 60
           MAGYRAEDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSLNVDGK
Sbjct: 1   MAGYRAEDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSLNVDGK 60

Query: 61  VVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIV 120
           VVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIV
Sbjct: 61  VVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIV 120

Query: 121 VMLVGNKSDLRHLVAVSTEDGKSFAEKESLYFMETSALEATNVENSFAEVLTQIYHIVSK 180
           VMLVGNKSDLRHLVAVSTEDGKSFAEKESLYFMETSALEATNVENSFAEVLTQIYHIVSK
Sbjct: 121 VMLVGNKSDLRHLVAVSTEDGKSFAEKESLYFMETSALEATNVENSFAEVLTQIYHIVSK 180

Query: 181 KAMEAGDGTAAASVPPKGEKIDVSKDVSAVKKAGCCSS 218
           KAMEAGDGTAAASVPPKGEKIDVSKDVSAVKKAGCCSS
Sbjct: 181 KAMEAGDGTAAASVPPKGEKIDVSKDVSAVKKAGCCSS 218

[Close]

BLAST of Cucsat.G18573 vs. ExPASy TrEMBL
Match: A0A0A0M076 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G469730 PE=4 SV=1)

HSP 1 Score: 428 bits (1100), Expect = 2.61e-151
Identity = 218/218 (100.00%), Postives = 218/218 (100.00%), Query Frame = 0


Query: 1   MAGYRAEDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSLNVDGK 60
           MAGYRAEDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSLNVDGK
Sbjct: 1   MAGYRAEDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSLNVDGK 60

Query: 61  VVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIV 120
           VVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIV
Sbjct: 61  VVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIV 120

Query: 121 VMLVGNKSDLRHLVAVSTEDGKSFAEKESLYFMETSALEATNVENSFAEVLTQIYHIVSK 180
           VMLVGNKSDLRHLVAVSTEDGKSFAEKESLYFMETSALEATNVENSFAEVLTQIYHIVSK
Sbjct: 121 VMLVGNKSDLRHLVAVSTEDGKSFAEKESLYFMETSALEATNVENSFAEVLTQIYHIVSK 180

Query: 181 KAMEAGDGTAAASVPPKGEKIDVSKDVSAVKKAGCCSS 218
           KAMEAGDGTAAASVPPKGEKIDVSKDVSAVKKAGCCSS
Sbjct: 181 KAMEAGDGTAAASVPPKGEKIDVSKDVSAVKKAGCCSS 218

[Close]

BLAST of Cucsat.G18573 vs. ExPASy TrEMBL
Match: A0A1S3B7Q9 (ras-related protein RABA1c OS=Cucumis melo OX=3656 GN=LOC103487076 PE=4 SV=1)

HSP 1 Score: 428 bits (1100), Expect = 2.61e-151
Identity = 218/218 (100.00%), Postives = 218/218 (100.00%), Query Frame = 0


Query: 1   MAGYRAEDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSLNVDGK 60
           MAGYRAEDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSLNVDGK
Sbjct: 1   MAGYRAEDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSLNVDGK 60

Query: 61  VVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIV 120
           VVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIV
Sbjct: 61  VVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIV 120

Query: 121 VMLVGNKSDLRHLVAVSTEDGKSFAEKESLYFMETSALEATNVENSFAEVLTQIYHIVSK 180
           VMLVGNKSDLRHLVAVSTEDGKSFAEKESLYFMETSALEATNVENSFAEVLTQIYHIVSK
Sbjct: 121 VMLVGNKSDLRHLVAVSTEDGKSFAEKESLYFMETSALEATNVENSFAEVLTQIYHIVSK 180

Query: 181 KAMEAGDGTAAASVPPKGEKIDVSKDVSAVKKAGCCSS 218
           KAMEAGDGTAAASVPPKGEKIDVSKDVSAVKKAGCCSS
Sbjct: 181 KAMEAGDGTAAASVPPKGEKIDVSKDVSAVKKAGCCSS 218

[Close]

BLAST of Cucsat.G18573 vs. ExPASy TrEMBL
Match: A0A6J1GS83 (ras-related protein RABA1c OS=Cucurbita moschata OX=3662 GN=LOC111457023 PE=4 SV=1)

HSP 1 Score: 411 bits (1056), Expect = 1.34e-144
Identity = 209/218 (95.87%), Postives = 212/218 (97.25%), Query Frame = 0


Query: 1   MAGYRAEDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSLNVDGK 60
           MAGYRAEDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSLNVD K
Sbjct: 1   MAGYRAEDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSLNVDSK 60

Query: 61  VVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIV 120
           VVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIV
Sbjct: 61  VVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIV 120

Query: 121 VMLVGNKSDLRHLVAVSTEDGKSFAEKESLYFMETSALEATNVENSFAEVLTQIYHIVSK 180
           VMLVGNKSDLRHLVAVSTEDGKSFAEKESLY+METSALEATNVEN+FAEVLTQIYHIVSK
Sbjct: 121 VMLVGNKSDLRHLVAVSTEDGKSFAEKESLYYMETSALEATNVENAFAEVLTQIYHIVSK 180

Query: 181 KAMEAGDGTAAASVPPKGEKIDVSKDVSAVKKAGCCSS 218
           KAMEAG+  AAASVP KGEKIDV KDVSAVKK GCCSS
Sbjct: 181 KAMEAGEDAAAASVPSKGEKIDVGKDVSAVKKGGCCSS 218

[Close]

BLAST of Cucsat.G18573 vs. ExPASy TrEMBL
Match: A0A6J1EN46 (ras-related protein RABA1c-like OS=Cucurbita moschata OX=3662 GN=LOC111434098 PE=4 SV=1)

HSP 1 Score: 410 bits (1055), Expect = 1.97e-144
Identity = 210/219 (95.89%), Postives = 214/219 (97.72%), Query Frame = 0


Query: 1   MAGYRAEDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSLNVDGK 60
           MAGYRAEDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSLNVD K
Sbjct: 1   MAGYRAEDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSLNVDSK 60

Query: 61  VVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIV 120
           V+KAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIV
Sbjct: 61  VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIV 120

Query: 121 VMLVGNKSDLRHLVAVSTEDGKSFAEKESLYFMETSALEATNVENSFAEVLTQIYHIVSK 180
           VMLVGNKSDLRHLVAVSTEDGKSFAEKESLYFMETSALEATNVENSFAEVLTQIYHIVSK
Sbjct: 121 VMLVGNKSDLRHLVAVSTEDGKSFAEKESLYFMETSALEATNVENSFAEVLTQIYHIVSK 180

Query: 181 KAMEAGDGTAAAS-VPPKGEKIDVSKDVSAVKKAGCCSS 218
           K+MEAGDG AAA+ VP KG+KIDV KDVSAVKKAGCCSS
Sbjct: 181 KSMEAGDGAAAAATVPSKGDKIDVGKDVSAVKKAGCCSS 219

The following BLAST results are available for this feature:

BLAST of Cucsat.G18573 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FK68	7.2e-105	88.99	Ras-related protein RABA1c OS=Arabidopsis thaliana OX=3702 GN=RABA1C PE=1 SV=1	[more]
Q9SN35	6.1e-104	88.99	Ras-related protein RABA1d OS=Arabidopsis thaliana OX=3702 GN=RABA1D PE=1 SV=1	[more]
P40393	3.9e-103	88.43	Ras-related protein RIC2 OS=Oryza sativa subsp. japonica OX=39947 GN=RIC2 PE=2 S...	[more]
Q39222	1.7e-98	84.47	Ras-related protein RABA1b OS=Arabidopsis thaliana OX=3702 GN=RABA1B PE=1 SV=1	[more]
Q01111	1.7e-98	81.65	Ras-related protein YPT3 OS=Nicotiana plumbaginifolia OX=4092 GN=YPT3 PE=2 SV=1	[more]

BLAST of Cucsat.G18573 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004147386.1	5.40e-151	100.00	ras-related protein RABA1c [Cucumis sativus] >XP_008443508.1 PREDICTED: ras-rela...	[more]
XP_038895845.1	3.00e-148	98.17	ras-related protein RABA1c [Benincasa hispida]	[more]
XP_022954901.1	2.76e-144	95.87	ras-related protein RABA1c [Cucurbita moschata] >XP_023541694.1 ras-related prot...	[more]
XP_022927164.1	4.06e-144	95.89	ras-related protein RABA1c-like [Cucurbita moschata] >XP_022927165.1 ras-related...	[more]
XP_023001179.1	5.98e-144	95.45	ras-related protein RABA1c-like [Cucurbita maxima]	[more]

BLAST of Cucsat.G18573 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UPM0	2.61e-151	100.00	Ras-related protein RABA1c OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaff...	[more]
A0A0A0M076	2.61e-151	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G469730 PE=4 SV=1	[more]
A0A1S3B7Q9	2.61e-151	100.00	ras-related protein RABA1c OS=Cucumis melo OX=3656 GN=LOC103487076 PE=4 SV=1	[more]
A0A6J1GS83	1.34e-144	95.87	ras-related protein RABA1c OS=Cucurbita moschata OX=3662 GN=LOC111457023 PE=4 SV...	[more]
A0A6J1EN46	1.97e-144	95.89	ras-related protein RABA1c-like OS=Cucurbita moschata OX=3662 GN=LOC111434098 PE...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR00449	RASTRNSFRMNG	coord: 37..53 score: 36.77 coord: 152..174 score: 39.68 coord: 55..77 score: 54.66 coord: 14..35 score: 55.22 coord: 117..130 score: 54.65
None	No IPR available	SMART	SM00176	ran_sub_2	coord: 19..216 e-value: 4.1E-6 score: 36.3
None	No IPR available	SMART	SM00173	ras_sub_4	coord: 11..177 e-value: 4.2E-26 score: 102.7
None	No IPR available	SMART	SM00175	rab_sub_5	coord: 14..177 e-value: 4.3E-112 score: 388.4
None	No IPR available	PANTHER	PTHR47979	DRAB11-RELATED	coord: 1..218
None	No IPR available	PANTHER	PTHR47979:SF27	RAS-RELATED PROTEIN RIC2	coord: 1..218
None	No IPR available	PROSITE	PS51420	RHO	coord: 7..186 score: 10.674864
None	No IPR available	PROSITE	PS51419	RAB	coord: 9..216 score: 35.699528
None	No IPR available	CDD	cd01868	Rab11_like	coord: 11..175 e-value: 2.96319E-129 score: 359.181
IPR001806	Small GTPase	SMART	SM00174	rho_sub_3	coord: 16..173 e-value: 1.6E-12 score: 40.5
IPR001806	Small GTPase	PFAM	PF00071	Ras	coord: 15..175 e-value: 1.7E-61 score: 206.6
IPR001806	Small GTPase	PROSITE	PS51421	RAS	coord: 6..218 score: 16.501686
IPR005225	Small GTP-binding protein domain	TIGRFAM	TIGR00231	TIGR00231	coord: 12..170 e-value: 1.4E-39 score: 133.5
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 6..216 e-value: 2.4E-72 score: 244.4
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 9..180

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsat.G18573.T1	Cucsat.G18573.T1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006886	intracellular protein transport
cellular_component	GO:0012505	endomembrane system
molecular_function	GO:0003924	GTPase activity
molecular_function	GO:0005525	GTP binding