Cucsat.G18446 (gene) Cucumber (B10) v3

Overview
NameCucsat.G18446
Typegene
OrganismCucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description60S ribosomal protein L18a
Locationctg3379: 1684588 .. 1687366 (+)
RNA-Seq ExpressionCucsat.G18446
SyntenyCucsat.G18446
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TATTTGCACCCGAATCCCTAGGTATATAAACAAAGCAAAACCCTAAGCCCGCGCCTCAGTAATCAGTTGGGAAGAGAGATCGATCGTTCACAGAGACATCAACAAGCTTCTCTTTTCCTCCAAGATGGTGTCTTTTAGGGTTAGATTTATAATTTGTTCTTTGATTTCTTCTTTTTGTCTAATGATTGATGCTAGAATTAATTTTTTCAACTTTCATCATAGAATTGCCAGGATTTTGGGCAATGAATATGTGATTCTCTTGTTGGTGTATTTGATATTTCTTGTCTTTCGAGCAATTTGAGATGTTTTTTCTTTACCACATTTTTGTTGCCTAGTTTCTTCAGAACCAAAATCTGGGGGATTCGAGGTGTGTTGAATTTATGTCTTTGGTTTTTTGGTTTTGTTTTTTCTTTTGCAGTTCCACCAATATCAGGTTGTGGGAAGGGCTCTTCCATCTGAATCAGATGAACACCCTAAGATTTACAGAATGAAGCTCTGGGCTACGAATGAGGTCCGAGCTAAGTCCAAGTTCTGGTCAGTCTTCCGTTGGAAATGCTAAATGATTTTGAGTTTAGTCTAGCTTTTGGGTCGAGTTGTTAGATTTTCAAAACTTGTCTCATTGTTCCTAATCAGGTACTTTTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAATGGACAAGTTCTTGCTATTAATGAGGTATACAAGCGTAGGATAATGAATTTTACTCTTGTTTTTTGTATGAAGCTAATGATCTTTCAATTTTATTTCACGAACTATTAGCTTCTTGAAAATGTAATCTCTCTCCATTATCTGAACGGAAAGGGTTACTGGTTAAGAGGGAAATGAATCCCAGATATTGTGTTTGTCCATTTAGCTCATTTAAAGGTTGTCAATTGTGTGATATTTTAAATGTAGAGATAGCCAAGATTTTCTTGTGCTAGTACTTGACCTGTTAAAATGAATGTGCTTTTATCCAAGTGCTCATGCTTTTCTGATGATAATTGAGAATCTGTGATATTTCACTTAGGAAGGATACCCACTTTTCTGGTGGTGATATTGTTAGATGGAGTTCTATCTGTCCTCTTATGCAAATCACTTATATTAAAGTGCATGTTGATCCCTCTTTTGAAGAAAATGAATGGGGAGAGAGAATTGAGAAAGTTGGAAGGTTTGAATAATCGGCTGGGGTGGCAGGAAAGAAGTGATAGTGAACTTCGTTGTAGATTCGAGTCTACATGTTGGCAGGAGGAGGGTCTTTACAATCTCTTGTGGAGCTATAAGTTTGTTTCAGGGTGTTTGGGATTGTTGGGGTGTGTGATAGGGACGGTTGCTATGTGGTGAAGGAGATTCTGCAATAAAAGATGAGTCTTGTGGCAGATTTGTTATTTTGCTATATTGTGAGGGTGTTTCTTGAGAGGTACTATAGAATTTTTAAAGAGTTGGAGAGGTCTAGTGTGAGAGGTTGAGAGGTTTAATGAATCTTTATGGGCGTTTGTTAATCAATCTTTTTGTACTTGTCAGTTTGGTGTAGTTCTTTTGGATTGGAGTCAAGTTTCGCAAGACTTAAAGCTGGGTGTGGTACGAATATTCGTTTCTGGAAAAAAATTGGATTGAGCACCCCTCCTTGAAGAATGCTTCCCAAGCATTTGCTTCATTTCCTACAAAGAATTCCTTAATTGAATGATTACTGATTGCTGTTATGATGATAAACTGACTTGGATAAAGAGAGGCCTTTTTGATAAAGAATTACAATGTTGGATTGATCTATGGAAAATCTTAGCTCGGTGCAGATTAGTGAGACTGTTGATCATATTTGGTGGTTTTTTGAAGGCTTTACCTTCTGCGTTTCTTGAGTCTTGCTACCAAGCCTACTAAGGTGGCTTCTTCCTTGACGAGTTTAAATTAGGGGTATAAAAGCTATAAGAAAGTAAAGTCTTCATGTGGTCTGTGACTTATAGAATTTTGAATATTGATGATAGACTCCAAAGGAAGCTTAGAAGGTGGTCTCTCTTTATAAAGAAGCAGAAGATATAGGTCACCTCTTCATCCATTGTAATTTTTCTTATAATGTGTAGAATTTCCTAGCCAATAGCTTGGGTTTATCTCTTTGTTTCCTCAAAAAGATTGATGACCGGCTACTGGATAGCTGGAGTGATGGCTGACTGTGCCTTTAGAGCTATCTTGTTGGGCACATTTGGAAGGAAAGGAACACTAGATCTTTTGAAGAGAAGTCCTCTTTTGTCTGGTCCTTTTTACCATTTGTACCTTGTACATGCCTTGGTGGATATCTTAACACAAGAAATTCTTTTGTAACTAGTGTGTTTTGCTGATTATTTGTGATTGGAAAGCTCTCTTTGTTTAGCTTTGGTGGGGTCTCCTCTACCCCGCCTTAAGACAATTTAAGAGTATTGCCTTTTAAAACTTTTTGATCGTTTGATTGGTAGTTTTGGGTTTATCTCTCATCCTGTAGCATAGTTTGTAGCATAATGCCTTGTGTGCATCAGTACTTAGTCGAATTCCTTTTAGATTGACTTCATTCTGAATATAAATTGTCAATTTTATTACCCTGCAGATCTTTGAGAAGAATCCTACCAAAGTTAAGAACTATGGCATCTGGCTGCGCTACCAAAGCCGAACTGGATATCATAACATGTACAAGGAATATCGTGACACCACTCTCAACGGTGCTGTGGAACAAATGTACACCGAGATGGCTTCTCGGCACAGGGTAAGATCTCCATGCATTCAAATCATCAAGACTGCAACCGTTCCTGCTAAGCTGTGCAAGAGGGAAAGCACCAAACAGTTCCATGATTCTAAGATCAAATTCCCTTTGGTGTTCAAGAAAGTTAGACCCCCAACCAGGAAGCTTAAGACCACATACAAGGCCTCAAAACCCAATCTATTCATGTAATCTCTTCCTTCTCTATCCCCTCAGCAAAGAAAATGGATTAGAGTTTTGGTTTAAAACTTGAAATTTTTGGTAGATTTTGATCTTTCACTTCCTATTGTTACCAATGAATGTTCTAATTTTAAATTGAGGACTTCAAATTTTGTTTTGGGTTTTTCTTTTTCCTGCTCATTCTTGGAAGTGCTTTGAGTTTACATGAAGTATTCTTAATTGGGCTTATTTCAAATATATGAGCTACTTATGATTCGTGAGGGGGCAAACCTTCCCATTTTCGTTCTTAAAATTTGTGAAGTTATCAATAATTGCTTATGTAACAAAGATTATCATATTATTTTTATGTCGATTGGTATTGAAATAGTGACTGTCCTCTGTTGGTTGTTAATCAAT

Coding sequence (CDS)

ATGGTGTCTTTTAGGTTCCACCAATATCAGGTTGTGGGAAGGGCTCTTCCATCTGAATCAGATGAACACCCTAAGATTTACAGAATGAAGCTCTGGGCTACGAATGAGGTCCGAGCTAAGTCCAAGTTCTGGTACTTTTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAATGGACAAGTTCTTGCTATTAATGAGATCTTTGAGAAGAATCCTACCAAAGTTAAGAACTATGGCATCTGGCTGCGCTACCAAAGCCGAACTGGATATCATAACATGTACAAGGAATATCGTGACACCACTCTCAACGGTGCTGTGGAACAAATGTACACCGAGATGGCTTCTCGGCACAGGGTAAGATCTCCATGCATTCAAATCATCAAGACTGCAACCGTTCCTGCTAAGCTGTGCAAGAGGGAAAGCACCAAACAGTTCCATGATTCTAAGATCAAATTCCCTTTGGTGTTCAAGAAAGTTAGACCCCCAACCAGGAAGCTTAAGACCACATACAAGGCCTCAAAACCCAATCTATTCATGTAA

Protein sequence

MVSFRFHQYQVVGRALPSESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVLAINEIFEKNPTKVKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYKASKPNLFM
Homology
[Close]
BLAST of Cucsat.G18446 vs. ExPASy Swiss-Prot
Match: P51418 (60S ribosomal protein L18a-2 OS=Arabidopsis thaliana OX=3702 GN=RPL18AB PE=1 SV=2)

HSP 1 Score: 256.9 bits (655), Expect = 1.3e-67
Identity = 124/134 (92.54%), Postives = 132/134 (98.51%), Query Frame = 0 

Query: 8   YFLRKLKKVKKSNGQVLAINEIFEKNPTKVKNYGIWLRYQSRTGYHNMYKEYRDTTLNGA 67
           YFLRKLKKVKKSNGQ+LAINEI+EKNPT +KN+GIWLRYQSRTGYHNMYKEYRDTTLNGA
Sbjct: 45  YFLRKLKKVKKSNGQMLAINEIYEKNPTTIKNFGIWLRYQSRTGYHNMYKEYRDTTLNGA 104

Query: 68  VEQMYTEMASRHRVRSPCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRK 127
           VEQMYTEMASRHRVR PCIQIIKTATVPAKLCKRESTKQFH+SKIKFPLVF+KVRPP+RK
Sbjct: 105 VEQMYTEMASRHRVRFPCIQIIKTATVPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRK 164

Query: 128 LKTTYKASKPNLFM 142
           LKTTYKA+KPNLFM
Sbjct: 165 LKTTYKANKPNLFM 178

[Close]
BLAST of Cucsat.G18446 vs. ExPASy Swiss-Prot
Match: Q9LUD4 (60S ribosomal protein L18a-3 OS=Arabidopsis thaliana OX=3702 GN=RPL18AC PE=2 SV=1)

HSP 1 Score: 256.1 bits (653), Expect = 2.2e-67
Identity = 124/134 (92.54%), Postives = 130/134 (97.01%), Query Frame = 0 

Query: 8   YFLRKLKKVKKSNGQVLAINEIFEKNPTKVKNYGIWLRYQSRTGYHNMYKEYRDTTLNGA 67
           YF+RKLKKVKKSNGQ+LAINEIFEKNPT +KNYGIWLRYQSRTGYHNMYKEYRDTTLNG 
Sbjct: 45  YFMRKLKKVKKSNGQMLAINEIFEKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGG 104

Query: 68  VEQMYTEMASRHRVRSPCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRK 127
           VEQMYTEMASRHRVR PCIQIIKTATVPAKLCKRE TKQFH+SKIKFPLVF+KVRPP+RK
Sbjct: 105 VEQMYTEMASRHRVRFPCIQIIKTATVPAKLCKREITKQFHNSKIKFPLVFRKVRPPSRK 164

Query: 128 LKTTYKASKPNLFM 142
           LKTTYKASKPNLFM
Sbjct: 165 LKTTYKASKPNLFM 178

[Close]
BLAST of Cucsat.G18446 vs. ExPASy Swiss-Prot
Match: Q8L7K0 (60S ribosomal protein L18a-1 OS=Arabidopsis thaliana OX=3702 GN=RPL18AA PE=2 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 5.5e-66
Identity = 121/134 (90.30%), Postives = 130/134 (97.01%), Query Frame = 0 

Query: 8   YFLRKLKKVKKSNGQVLAINEIFEKNPTKVKNYGIWLRYQSRTGYHNMYKEYRDTTLNGA 67
           Y+LR+ KKVKKSNGQ+LAINEIFEKNPT +KN+GIWLRYQSRTGYHNMYKEYRDTTLNGA
Sbjct: 45  YYLRRQKKVKKSNGQMLAINEIFEKNPTTIKNFGIWLRYQSRTGYHNMYKEYRDTTLNGA 104

Query: 68  VEQMYTEMASRHRVRSPCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRK 127
           VEQMYTEMASRHRVR PCIQIIKTATVPA LCKRESTKQFH+SKIKFPLVF+KVRPPTRK
Sbjct: 105 VEQMYTEMASRHRVRFPCIQIIKTATVPASLCKRESTKQFHNSKIKFPLVFRKVRPPTRK 164

Query: 128 LKTTYKASKPNLFM 142
           LKTT+KA+KPNLFM
Sbjct: 165 LKTTFKANKPNLFM 178

[Close]
BLAST of Cucsat.G18446 vs. ExPASy Swiss-Prot
Match: Q9ATF5 (60S ribosomal protein L18a OS=Castanea sativa OX=21020 GN=RPL18A PE=2 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 5.5e-66
Identity = 121/134 (90.30%), Postives = 130/134 (97.01%), Query Frame = 0 

Query: 8   YFLRKLKKVKKSNGQVLAINEIFEKNPTKVKNYGIWLRYQSRTGYHNMYKEYRDTTLNGA 67
           YFLRKLKKVKKSNGQ+LAINEIFEKNPTK+KNYGIWLRYQSRTGYHNMYKEYRDTTLNGA
Sbjct: 45  YFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGA 104

Query: 68  VEQMYTEMASRHRVRSPCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRK 127
           VEQMY EMASRHRVR PCIQIIKTAT+PAKLCKRES+KQFH+SKIKFPLV +K+RPP+RK
Sbjct: 105 VEQMYIEMASRHRVRFPCIQIIKTATIPAKLCKRESSKQFHNSKIKFPLVTRKIRPPSRK 164

Query: 128 LKTTYKASKPNLFM 142
           LKT YKAS+PNLFM
Sbjct: 165 LKTHYKASRPNLFM 178

[Close]
BLAST of Cucsat.G18446 vs. ExPASy Swiss-Prot
Match: Q943F3 (60S ribosomal protein L18a OS=Oryza sativa subsp. japonica OX=39947 GN=RPL18A PE=1 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 6.1e-65
Identity = 120/134 (89.55%), Postives = 128/134 (95.52%), Query Frame = 0 

Query: 8   YFLRKLKKVKKSNGQVLAINEIFEKNPTKVKNYGIWLRYQSRTGYHNMYKEYRDTTLNGA 67
           YFLRKLKKVKKSNGQ+LAINEIFEKNPT +KNYGIWLRYQSRTGYHNMYKEYRDTTLNGA
Sbjct: 45  YFLRKLKKVKKSNGQILAINEIFEKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGA 104

Query: 68  VEQMYTEMASRHRVRSPCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRK 127
           VEQMYTEMASRHRVR PCIQIIKTATV  KLCKR++TKQFH S IKFPLV++KVRPPTRK
Sbjct: 105 VEQMYTEMASRHRVRFPCIQIIKTATVHFKLCKRDNTKQFHKSDIKFPLVYRKVRPPTRK 164

Query: 128 LKTTYKASKPNLFM 142
           LKTT+KAS+PNLFM
Sbjct: 165 LKTTFKASRPNLFM 178

[Close]
BLAST of Cucsat.G18446 vs. NCBI nr
Match: XP_031736225.1 (60S ribosomal protein L18a [Cucumis sativus] >KAE8653191.1 hypothetical protein Csa_019606 [Cucumis sativus])

HSP 1 Score: 269 bits (687), Expect = 5.22e-90
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 0 

Query: 8   YFLRKLKKVKKSNGQVLAINEIFEKNPTKVKNYGIWLRYQSRTGYHNMYKEYRDTTLNGA 67
           YFLRKLKKVKKSNGQVLAINEIFEKNPTKVKNYGIWLRYQSRTGYHNMYKEYRDTTLNGA
Sbjct: 45  YFLRKLKKVKKSNGQVLAINEIFEKNPTKVKNYGIWLRYQSRTGYHNMYKEYRDTTLNGA 104

Query: 68  VEQMYTEMASRHRVRSPCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRK 127
           VEQMYTEMASRHRVRSPCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRK
Sbjct: 105 VEQMYTEMASRHRVRSPCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRK 164

Query: 128 LKTTYKASKPNLFM 141
           LKTTYKASKPNLFM
Sbjct: 165 LKTTYKASKPNLFM 178

[Close]
BLAST of Cucsat.G18446 vs. NCBI nr
Match: XP_022936961.1 (60S ribosomal protein L18a-2 isoform X2 [Cucurbita moschata])

HSP 1 Score: 266 bits (681), Expect = 1.35e-89
Identity = 131/135 (97.04%), Postives = 134/135 (99.26%), Query Frame = 0 

Query: 7   RYFLRKLKKVKKSNGQVLAINEIFEKNPTKVKNYGIWLRYQSRTGYHNMYKEYRDTTLNG 66
           RYFLRKLKKVKKSNGQ+LAINEIFEKNPTK+ NYGIWLRYQSRTGYHNMYKEYRDTTLNG
Sbjct: 10  RYFLRKLKKVKKSNGQILAINEIFEKNPTKINNYGIWLRYQSRTGYHNMYKEYRDTTLNG 69

Query: 67  AVEQMYTEMASRHRVRSPCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTR 126
           AVEQMYTEMASRHRVRSPCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTR
Sbjct: 70  AVEQMYTEMASRHRVRSPCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTR 129

Query: 127 KLKTTYKASKPNLFM 141
           KLKTTYKAS+PNLFM
Sbjct: 130 KLKTTYKASRPNLFM 144

[Close]
BLAST of Cucsat.G18446 vs. NCBI nr
Match: KAB2007634.1 (hypothetical protein ES319_D10G043100v1 [Gossypium barbadense])

HSP 1 Score: 266 bits (680), Expect = 1.46e-89
Identity = 131/136 (96.32%), Postives = 135/136 (99.26%), Query Frame = 0 

Query: 6   MRYFLRKLKKVKKSNGQVLAINEIFEKNPTKVKNYGIWLRYQSRTGYHNMYKEYRDTTLN 65
           MRYFLRKLKKVKKSNGQVLAINEIFEKNPTK+KNYGIWLRYQSRTGYHNMYKEYRDTTLN
Sbjct: 1   MRYFLRKLKKVKKSNGQVLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLN 60

Query: 66  GAVEQMYTEMASRHRVRSPCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPT 125
           GAVEQMYTEMASRHRVR PCIQIIKTAT+PAKLCKR+STKQFH+SKIKFPLVFKKVRPPT
Sbjct: 61  GAVEQMYTEMASRHRVRFPCIQIIKTATIPAKLCKRDSTKQFHNSKIKFPLVFKKVRPPT 120

Query: 126 RKLKTTYKASKPNLFM 141
           RKLKTTYKASKPNLFM
Sbjct: 121 RKLKTTYKASKPNLFM 136

[Close]
BLAST of Cucsat.G18446 vs. NCBI nr
Match: XP_008444078.1 (PREDICTED: 60S ribosomal protein L18a [Cucumis melo] >KAA0053960.1 60S ribosomal protein L18a [Cucumis melo var. makuwa] >TYK20644.1 60S ribosomal protein L18a [Cucumis melo var. makuwa])

HSP 1 Score: 268 bits (684), Expect = 1.50e-89
Identity = 133/134 (99.25%), Postives = 134/134 (100.00%), Query Frame = 0 

Query: 8   YFLRKLKKVKKSNGQVLAINEIFEKNPTKVKNYGIWLRYQSRTGYHNMYKEYRDTTLNGA 67
           YFLRKLKKVKKSNGQVLAINEIFEKNPTKVKNYGIWLRYQSRTGYHNMYKEYRDTTLNGA
Sbjct: 45  YFLRKLKKVKKSNGQVLAINEIFEKNPTKVKNYGIWLRYQSRTGYHNMYKEYRDTTLNGA 104

Query: 68  VEQMYTEMASRHRVRSPCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRK 127
           VEQMYTEMASRHRVRSPCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRK
Sbjct: 105 VEQMYTEMASRHRVRSPCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRK 164

Query: 128 LKTTYKASKPNLFM 141
           L+TTYKASKPNLFM
Sbjct: 165 LRTTYKASKPNLFM 178

[Close]
BLAST of Cucsat.G18446 vs. NCBI nr
Match: KAE8649787.1 (hypothetical protein Csa_012172 [Cucumis sativus])

HSP 1 Score: 266 bits (680), Expect = 6.09e-89
Identity = 131/134 (97.76%), Postives = 133/134 (99.25%), Query Frame = 0 

Query: 8   YFLRKLKKVKKSNGQVLAINEIFEKNPTKVKNYGIWLRYQSRTGYHNMYKEYRDTTLNGA 67
           YFLRKLKKVKKSNGQ+LAINEIFEKNPTK+KNYGIWLRYQSRTGYHNMYKEYRDTTLNGA
Sbjct: 45  YFLRKLKKVKKSNGQILAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGA 104

Query: 68  VEQMYTEMASRHRVRSPCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRK 127
           VEQMYTEMASRHRVR PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRK
Sbjct: 105 VEQMYTEMASRHRVRCPCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRK 164

Query: 128 LKTTYKASKPNLFM 141
           LKTTYKASKPNLFM
Sbjct: 165 LKTTYKASKPNLFM 178

[Close]
BLAST of Cucsat.G18446 vs. ExPASy TrEMBL
Match: A0A6J1F8Y0 (60S ribosomal protein L18a-2 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111443392 PE=3 SV=1)

HSP 1 Score: 266 bits (681), Expect = 6.54e-90
Identity = 131/135 (97.04%), Postives = 134/135 (99.26%), Query Frame = 0 

Query: 7   RYFLRKLKKVKKSNGQVLAINEIFEKNPTKVKNYGIWLRYQSRTGYHNMYKEYRDTTLNG 66
           RYFLRKLKKVKKSNGQ+LAINEIFEKNPTK+ NYGIWLRYQSRTGYHNMYKEYRDTTLNG
Sbjct: 10  RYFLRKLKKVKKSNGQILAINEIFEKNPTKINNYGIWLRYQSRTGYHNMYKEYRDTTLNG 69

Query: 67  AVEQMYTEMASRHRVRSPCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTR 126
           AVEQMYTEMASRHRVRSPCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTR
Sbjct: 70  AVEQMYTEMASRHRVRSPCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTR 129

Query: 127 KLKTTYKASKPNLFM 141
           KLKTTYKAS+PNLFM
Sbjct: 130 KLKTTYKASRPNLFM 144

[Close]
BLAST of Cucsat.G18446 vs. ExPASy TrEMBL
Match: A0A5J5PMK8 (Ribosomal_L18A domain-containing protein OS=Gossypium barbadense OX=3634 GN=ES319_D10G043100v1 PE=3 SV=1)

HSP 1 Score: 266 bits (680), Expect = 7.08e-90
Identity = 131/136 (96.32%), Postives = 135/136 (99.26%), Query Frame = 0 

Query: 6   MRYFLRKLKKVKKSNGQVLAINEIFEKNPTKVKNYGIWLRYQSRTGYHNMYKEYRDTTLN 65
           MRYFLRKLKKVKKSNGQVLAINEIFEKNPTK+KNYGIWLRYQSRTGYHNMYKEYRDTTLN
Sbjct: 1   MRYFLRKLKKVKKSNGQVLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLN 60

Query: 66  GAVEQMYTEMASRHRVRSPCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPT 125
           GAVEQMYTEMASRHRVR PCIQIIKTAT+PAKLCKR+STKQFH+SKIKFPLVFKKVRPPT
Sbjct: 61  GAVEQMYTEMASRHRVRFPCIQIIKTATIPAKLCKRDSTKQFHNSKIKFPLVFKKVRPPT 120

Query: 126 RKLKTTYKASKPNLFM 141
           RKLKTTYKASKPNLFM
Sbjct: 121 RKLKTTYKASKPNLFM 136

[Close]
BLAST of Cucsat.G18446 vs. ExPASy TrEMBL
Match: A0A5D3DAT6 (60S ribosomal protein L18a OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold480G00280 PE=3 SV=1)

HSP 1 Score: 268 bits (684), Expect = 7.25e-90
Identity = 133/134 (99.25%), Postives = 134/134 (100.00%), Query Frame = 0 

Query: 8   YFLRKLKKVKKSNGQVLAINEIFEKNPTKVKNYGIWLRYQSRTGYHNMYKEYRDTTLNGA 67
           YFLRKLKKVKKSNGQVLAINEIFEKNPTKVKNYGIWLRYQSRTGYHNMYKEYRDTTLNGA
Sbjct: 45  YFLRKLKKVKKSNGQVLAINEIFEKNPTKVKNYGIWLRYQSRTGYHNMYKEYRDTTLNGA 104

Query: 68  VEQMYTEMASRHRVRSPCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRK 127
           VEQMYTEMASRHRVRSPCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRK
Sbjct: 105 VEQMYTEMASRHRVRSPCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRK 164

Query: 128 LKTTYKASKPNLFM 141
           L+TTYKASKPNLFM
Sbjct: 165 LRTTYKASKPNLFM 178

[Close]
BLAST of Cucsat.G18446 vs. ExPASy TrEMBL
Match: A0A1S3BAA5 (60S ribosomal protein L18a OS=Cucumis melo OX=3656 GN=LOC103487514 PE=3 SV=1)

HSP 1 Score: 268 bits (684), Expect = 7.25e-90
Identity = 133/134 (99.25%), Postives = 134/134 (100.00%), Query Frame = 0 

Query: 8   YFLRKLKKVKKSNGQVLAINEIFEKNPTKVKNYGIWLRYQSRTGYHNMYKEYRDTTLNGA 67
           YFLRKLKKVKKSNGQVLAINEIFEKNPTKVKNYGIWLRYQSRTGYHNMYKEYRDTTLNGA
Sbjct: 45  YFLRKLKKVKKSNGQVLAINEIFEKNPTKVKNYGIWLRYQSRTGYHNMYKEYRDTTLNGA 104

Query: 68  VEQMYTEMASRHRVRSPCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRK 127
           VEQMYTEMASRHRVRSPCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRK
Sbjct: 105 VEQMYTEMASRHRVRSPCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRK 164

Query: 128 LKTTYKASKPNLFM 141
           L+TTYKASKPNLFM
Sbjct: 165 LRTTYKASKPNLFM 178

[Close]
BLAST of Cucsat.G18446 vs. ExPASy TrEMBL
Match: A0A6J1GT98 (60S ribosomal protein L18a OS=Cucurbita moschata OX=3662 GN=LOC111457325 PE=3 SV=1)

HSP 1 Score: 266 bits (680), Expect = 2.95e-89
Identity = 132/134 (98.51%), Postives = 133/134 (99.25%), Query Frame = 0 

Query: 8   YFLRKLKKVKKSNGQVLAINEIFEKNPTKVKNYGIWLRYQSRTGYHNMYKEYRDTTLNGA 67
           YFLRKLKKVKKSNGQVLAINEIFEKNPTK+KNYGIWLRYQSRTGYHNMYKEYRDTTLN A
Sbjct: 45  YFLRKLKKVKKSNGQVLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNSA 104

Query: 68  VEQMYTEMASRHRVRSPCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRK 127
           VEQMYTEMASRHRVRSPCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRK
Sbjct: 105 VEQMYTEMASRHRVRSPCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRK 164

Query: 128 LKTTYKASKPNLFM 141
           LKTTYKASKPNLFM
Sbjct: 165 LKTTYKASKPNLFM 178

The following BLAST results are available for this feature:
BLAST of Cucsat.G18446 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P514181.3e-6792.5460S ribosomal protein L18a-2 OS=Arabidopsis thaliana OX=3702 GN=RPL18AB PE=1 SV=... [more]
Q9LUD42.2e-6792.5460S ribosomal protein L18a-3 OS=Arabidopsis thaliana OX=3702 GN=RPL18AC PE=2 SV=... [more]
Q8L7K05.5e-6690.3060S ribosomal protein L18a-1 OS=Arabidopsis thaliana OX=3702 GN=RPL18AA PE=2 SV=... [more]
Q9ATF55.5e-6690.3060S ribosomal protein L18a OS=Castanea sativa OX=21020 GN=RPL18A PE=2 SV=1[more]
Q943F36.1e-6589.5560S ribosomal protein L18a OS=Oryza sativa subsp. japonica OX=39947 GN=RPL18A PE... [more]
BLAST of Cucsat.G18446 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_031736225.15.22e-90100.0060S ribosomal protein L18a [Cucumis sativus] >KAE8653191.1 hypothetical protein ... [more]
XP_022936961.11.35e-8997.0460S ribosomal protein L18a-2 isoform X2 [Cucurbita moschata][more]
KAB2007634.11.46e-8996.32hypothetical protein ES319_D10G043100v1 [Gossypium barbadense][more]
XP_008444078.11.50e-8999.25PREDICTED: 60S ribosomal protein L18a [Cucumis melo] >KAA0053960.1 60S ribosomal... [more]
KAE8649787.16.09e-8997.76hypothetical protein Csa_012172 [Cucumis sativus][more]
BLAST of Cucsat.G18446 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1F8Y06.54e-9097.0460S ribosomal protein L18a-2 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC1114... [more]
A0A5J5PMK87.08e-9096.32Ribosomal_L18A domain-containing protein OS=Gossypium barbadense OX=3634 GN=ES31... [more]
A0A5D3DAT67.25e-9099.2560S ribosomal protein L18a OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff... [more]
A0A1S3BAA57.25e-9099.2560S ribosomal protein L18a OS=Cucumis melo OX=3656 GN=LOC103487514 PE=3 SV=1[more]
A0A6J1GT982.95e-8998.5160S ribosomal protein L18a OS=Cucurbita moschata OX=3662 GN=LOC111457325 PE=3 SV... [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR023573Ribosomal protein 50S-L18Ae/60S-L20/60S-L18APFAMPF01775Ribosomal_L18Acoord: 7..128
e-value: 1.4E-55
score: 186.6
IPR02113860S ribosomal protein L18a/ L20, eukaryotesPIRSFPIRSF002190Ribosomal_L18acoord: 1..178
e-value: 1.9E-72
score: 240.3
NoneNo IPR availableGENE3D3.10.20.10coord: 1..71
e-value: 1.9E-38
score: 132.1
NoneNo IPR availableGENE3D3.10.20.10coord: 72..147
e-value: 7.4E-43
score: 146.8
NoneNo IPR availablePANTHERPTHR10052:SF4560S RIBOSOMAL PROTEIN L18Acoord: 1..137
coord: 138..178
NoneNo IPR availableSUPERFAMILY160374RplX-likecoord: 71..146
IPR02887750S ribosomal protein L18Ae/60S ribosomal protein L20 and L18aPANTHERPTHR1005260S RIBOSOMAL PROTEIN L18Acoord: 1..137
coord: 138..178
IPR02887750S ribosomal protein L18Ae/60S ribosomal protein L20 and L18aHAMAPMF_00273Ribosomal_L18Aecoord: 6..69
score: 24.507002

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsat.G18446.T1Cucsat.G18446.T1mRNA
Cucsat.G18446.T2Cucsat.G18446.T2mRNA
Cucsat.G18446.T7Cucsat.G18446.T7mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0022625 cytosolic large ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome