Cucsat.G17942 (gene) Cucumber (B10) v3

Overview
NameCucsat.G17942
Typegene
OrganismCucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Descriptiontranscription factor RAX1-like
Locationctg3345: 1624810 .. 1626181 (+)
RNA-Seq ExpressionCucsat.G17942
SyntenyCucsat.G17942
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GTAATTTGAAAACCGAAACGCTTTTGTAAAGATTGAAATTGAATGAAGTTAAAAGTAGTAGTGACGAAAATGGGTTTTTAACCTTATTTTAACAGATTGGGTGTGTGACATTAGGTGGAGCCCAAAGATATGGTTTTTTAAATTTTCTTTAAGAGAGAGTGGGGGAGGTTGAAACTTCAGCATATAATTGTAGGTCTCAAGGAAAGACCTGCGTTGGTTTCCATTTGTTAAGGGAAAAAGAGATATCAAGAAGAAAAGAGATGGGAAGAGCTCCTTGTTGTGACAAAGCAAATGTGAAAAAAGGGCCATGGTCACCTGAAGAGGATTCTAAGCTCAAACATCACATTGAAACTTATGGAACTGGTGGCAATTGGATTTCCCTTCCTCAAAAAGCTGGTAGGCTCCCCGTCTGATCTCATTTTCCTCTTTTCTTTTAAGTACTTGATCAAGATTCAAATATTTGACCTTCTAATCACTCTCTTAACCTGTTGATCAGCACTGATGCTTAAATCAATTTGTCAGGTCTTAGAAGATGTGGGAAGAGTTGTAGATTGAGATGGCTTAATTATCTTAGACCCAACATCAAGCATGGTGAATTTTCAGCTGAGGAAGATAGAATCATTTGTACTCTATTTGCCACTATTGGCAGCCGGTAATGAAATATTACAAGTACATATCAGTTAGACACATTTATTTTTCCATGAAAACCTAATTCTGACTATGTACATCATTTAGATGGTCAATTATTGCTGCTCAATTGCCGGGAAGGACCGACAACGATATAAAGAACTATTGGAATACGAAGTTGAAGAAGAAACTTATGATGGGGATGGTATCATCTTCTTCTACTGCTAATACAACTCATTGTGCTCCACAAGCAGAGGTCATTAGAAAGATTGAAACTTTATCACCAAAACCCCATCAAAATCACTCCTTCGAATATCAACCATTCTCCAATGTTAGTTATGAACCATTATTATCCACTAGTTATTCAATCCCATTATTCAACTATTGTAATAACCCAATTAGTAGCTGTTTGGTAACCAACCCTTTTGACCAAAACAATAACTTCTATGAAACCCTAAAACCAAACCAAATGGGGTTTGAGTTTGATGAATTAGAATATGGTGGGTTAAACTCAAATAGTTTCAACAATGGGTTATTGTTTGATGAGAAGATGAAGATGATGCAGCAAAACAACAATGGGAATGAAGGGTATAACGGTAATTATGTTGAGGGAAATACAATGATGATGAAGGAAGAGGAAGAGATGATGGAGCAAAAAAGAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAACAGAGAAGTACAAAGTGATGGAGGGAGTTTTGAGATTCTGACAACTGACTGTTAAGTGTAAAATCAAGAAAGATTTGATGGGGTATGGGAGGAACTGCCACAAATATATCACACCAAATTACTTTCAATATTTATTGGGTTTTGTGTGTTTTTATGTTTCTTCCTTTTTTCTTTTTCTTTCTTTTTTTGTTTGGTTTAGGTAAATTGGTAAATTGGTAAATTGGATGTGAAATGAAATGGTCTGTTTAATTTATTTTCTTTTGCTCTATATTTCTATAT

Coding sequence (CDS)

ATGGGAAGAGCTCCTTGTTGTGACAAAGCAAATGTGAAAAAAGGGCCATGGTCACCTGAAGAGGATTCTAAGCTCAAACATCACATTGAAACTTATGGAACTGGTGGCAATTGGATTTCCCTTCCTCAAAAAGCTGGTCTTAGAAGATGTGGGAAGAGTTGTAGATTGAGATGGCTTAATTATCTTAGACCCAACATCAAGCATGGTGAATTTTCAGCTGAGGAAGATAGAATCATTTGTACTCTATTTGCCACTATTGGCAGCCGATGGTCAATTATTGCTGCTCAATTGCCGGGAAGGACCGACAACGATATAAAGAACTATTGGAATACGAAGTTGAAGAAGAAACTTATGATGGGGATGGTATCATCTTCTTCTACTGCTAATACAACTCATTGTGCTCCACAAGCAGAGGTCATTAGAAAGATTGAAACTTTATCACCAAAACCCCATCAAAATCACTCCTTCGAATATCAACCATTCTCCAATGTTAGTTATGAACCATTATTATCCACTAGTTATTCAATCCCATTATTCAACTATTGTAATAACCCAATTAGTAGCTGTTTGGTAACCAACCCTTTTGACCAAAACAATAACTTCTATGAAACCCTAAAACCAAACCAAATGGGGTTTGAGTTTGATGAATTAGAATATGGTGGGTTAAACTCAAATAGTTTCAACAATGGGTTATTGTTTGATGAGAAGATGAAGATGATGCAGCAAAACAACAATGGGAATGAAGGGTATAACGGTAATTATGTTGAGGGAAATACAATGATGATGAAGGAAGAGGAAGAGATGATGGAGCAAAAAAGAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAACAGAGAAGTACAAAGTGA

Protein sequence

MGRAPCCDKANVKKGPWSPEEDSKLKHHIETYGTGGNWISLPQKAGLRRCGKSCRLRWLNYLRPNIKHGEFSAEEDRIICTLFATIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLMMGMVSSSSTANTTHCAPQAEVIRKIETLSPKPHQNHSFEYQPFSNVSYEPLLSTSYSIPLFNYCNNPISSCLVTNPFDQNNNFYETLKPNQMGFEFDELEYGGLNSNSFNNGLLFDEKMKMMQQNNNGNEGYNGNYVEGNTMMMKEEEEMMEQKREEEEEEEEEEQRSTK
Homology
BLAST of Cucsat.G17942 vs. NCBI nr
Match: XP_011657019.1 (transcription factor RAX1-like [Cucumis sativus] >KAE8646891.1 hypothetical protein Csa_020919 [Cucumis sativus])

HSP 1 Score: 320 bits (821), Expect = 2.78e-108
Identity = 168/171 (98.25%), Postives = 168/171 (98.25%), Query Frame = 0

Query: 1   MMGMVSSSSTANTTHCAPQAEVIRKIETLSPKPHQNHSFEYQPFSNVSYEPLLSTSYSIP 60
           MMGMVSSSSTANTTHCAPQAEVIRKIETLSPKPHQNHSFEYQPFSNVSYEPLLSTSYSIP
Sbjct: 118 MMGMVSSSSTANTTHCAPQAEVIRKIETLSPKPHQNHSFEYQPFSNVSYEPLLSTSYSIP 177

Query: 61  LFNYCNNPISSCLVTNPFDQNNNFYETLKPNQMGFEFDELEYGGLNSNSFNNGLLFDEKM 120
           LFNYCNNPISSCLVTNPFDQNNNFYETLKPNQMGFEFDELEYGGLNSNSFNNGLLFDEKM
Sbjct: 178 LFNYCNNPISSCLVTNPFDQNNNFYETLKPNQMGFEFDELEYGGLNSNSFNNGLLFDEKM 237

Query: 121 KMMQQNNNGNEGYNGNYVEGNTMMMKEEEEMMEQKREEEEEEEEEEQRSTK 171
           KMMQQNNNGNEGYN NYVEGNTMMMKEEEEMMEQKREEEEEEEE  QRSTK
Sbjct: 238 KMMQQNNNGNEGYNSNYVEGNTMMMKEEEEMMEQKREEEEEEEE--QRSTK 286

BLAST of Cucsat.G17942 vs. NCBI nr
Match: XP_008465353.1 (PREDICTED: transcription factor RAX1-like [Cucumis melo])

HSP 1 Score: 275 bits (703), Expect = 2.05e-90
Identity = 141/159 (88.68%), Postives = 148/159 (93.08%), Query Frame = 0

Query: 1   MMGMVSSSSTANTTHCAPQAEVIRKIETLSPKPHQNHSFEYQPFSNVSYEPLLSTSYSIP 60
           MMGMVSSSST NTTH APQAE+++ IETLSPKPHQN SF+YQP SN SYEPL S +YSIP
Sbjct: 118 MMGMVSSSSTTNTTHYAPQAEIVKTIETLSPKPHQNPSFDYQPLSNNSYEPLGSANYSIP 177

Query: 61  LFNYCNNPISSCLVTNPFDQNNNFYETLKPNQMGFEFDELEYGGLNSNSFNNGLLFDEKM 120
           LFNYCNNPISSCLVTNPFDQNN+FYETLKPNQ+GFEFDELEYGGLNS SFNNGLLFDEKM
Sbjct: 178 LFNYCNNPISSCLVTNPFDQNNSFYETLKPNQVGFEFDELEYGGLNSVSFNNGLLFDEKM 237

Query: 121 KMMQQNNNGNEGYNGNYVEGNTMMMKEEEEMMEQKREEE 159
           KMMQQNNNGNEGYNGNYVEGN MM KEEEEMMEQKREEE
Sbjct: 238 KMMQQNNNGNEGYNGNYVEGNAMM-KEEEEMMEQKREEE 275

BLAST of Cucsat.G17942 vs. NCBI nr
Match: KAA0035227.1 (transcription factor RAX1-like [Cucumis melo var. makuwa])

HSP 1 Score: 238 bits (608), Expect = 2.69e-76
Identity = 116/132 (87.88%), Postives = 123/132 (93.18%), Query Frame = 0

Query: 1   MMGMVSSSSTANTTHCAPQAEVIRKIETLSPKPHQNHSFEYQPFSNVSYEPLLSTSYSIP 60
           MMGMVSSSST NTTH APQAE+++ IETLSPKPHQN SF+YQP SN SYEPL S +YSIP
Sbjct: 118 MMGMVSSSSTTNTTHYAPQAEIVKTIETLSPKPHQNPSFDYQPLSNNSYEPLGSANYSIP 177

Query: 61  LFNYCNNPISSCLVTNPFDQNNNFYETLKPNQMGFEFDELEYGGLNSNSFNNGLLFDEKM 120
           LFNYCNNPISSCLVTNPFDQNN+FYETLKPNQ+GFEFDELEYGGLNS SFNNGLLFDEKM
Sbjct: 178 LFNYCNNPISSCLVTNPFDQNNSFYETLKPNQVGFEFDELEYGGLNSVSFNNGLLFDEKM 237

Query: 121 KMMQQNNNGNEG 132
           KMMQQNNNGNEG
Sbjct: 238 KMMQQNNNGNEG 249

BLAST of Cucsat.G17942 vs. NCBI nr
Match: XP_038902615.1 (transcription factor RAX1-like [Benincasa hispida])

HSP 1 Score: 160 bits (406), Expect = 2.17e-45
Identity = 104/167 (62.28%), Postives = 125/167 (74.85%), Query Frame = 0

Query: 1   MMGMVSSSSTANTTH--CAPQAEVIRKIETLSPKPHQNHSFEYQPFSN---VSYEPLLST 60
           ++GMVSSSS++  T+    PQAE+I+K E LSPK HQN SF+YQP SN   ++Y   LST
Sbjct: 117 LLGMVSSSSSSTNTYNYSTPQAEIIKKTECLSPKSHQNPSFDYQPLSNNNIINYYEPLST 176

Query: 61  SYSIPLFNYCNNPISS--CLVTNPFDQNNNFYETLKPNQMGFEFD-ELEYGGLNSNSFNN 120
           + SIPLFNYCN PISS  CL+TNPFDQN  FYETLKPNQM  +   ELE  GLNS +FNN
Sbjct: 177 N-SIPLFNYCN-PISSGSCLLTNPFDQN--FYETLKPNQMQMQMGFELEVSGLNSINFNN 236

Query: 121 GLLFDEKMKMMQQ---NNNGNEGYNGNYVEGNTMMMKEEEEMMEQKR 156
           G  F+EKM + QQ   +NN N+GY GN +EGN +MMKEEEEMMEQK+
Sbjct: 237 G--FEEKMMVQQQMNNSNNNNQGYIGNCLEGN-VMMKEEEEMMEQKK 276

BLAST of Cucsat.G17942 vs. ExPASy TrEMBL
Match: A0A1S3CNN7 (transcription factor RAX1-like OS=Cucumis melo OX=3656 GN=LOC103502992 PE=4 SV=1)

HSP 1 Score: 275 bits (703), Expect = 9.94e-91
Identity = 141/159 (88.68%), Postives = 148/159 (93.08%), Query Frame = 0

Query: 1   MMGMVSSSSTANTTHCAPQAEVIRKIETLSPKPHQNHSFEYQPFSNVSYEPLLSTSYSIP 60
           MMGMVSSSST NTTH APQAE+++ IETLSPKPHQN SF+YQP SN SYEPL S +YSIP
Sbjct: 118 MMGMVSSSSTTNTTHYAPQAEIVKTIETLSPKPHQNPSFDYQPLSNNSYEPLGSANYSIP 177

Query: 61  LFNYCNNPISSCLVTNPFDQNNNFYETLKPNQMGFEFDELEYGGLNSNSFNNGLLFDEKM 120
           LFNYCNNPISSCLVTNPFDQNN+FYETLKPNQ+GFEFDELEYGGLNS SFNNGLLFDEKM
Sbjct: 178 LFNYCNNPISSCLVTNPFDQNNSFYETLKPNQVGFEFDELEYGGLNSVSFNNGLLFDEKM 237

Query: 121 KMMQQNNNGNEGYNGNYVEGNTMMMKEEEEMMEQKREEE 159
           KMMQQNNNGNEGYNGNYVEGN MM KEEEEMMEQKREEE
Sbjct: 238 KMMQQNNNGNEGYNGNYVEGNAMM-KEEEEMMEQKREEE 275

BLAST of Cucsat.G17942 vs. ExPASy TrEMBL
Match: A0A5A7T0W8 (Transcription factor RAX1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold228G00030 PE=4 SV=1)

HSP 1 Score: 238 bits (608), Expect = 1.30e-76
Identity = 116/132 (87.88%), Postives = 123/132 (93.18%), Query Frame = 0

Query: 1   MMGMVSSSSTANTTHCAPQAEVIRKIETLSPKPHQNHSFEYQPFSNVSYEPLLSTSYSIP 60
           MMGMVSSSST NTTH APQAE+++ IETLSPKPHQN SF+YQP SN SYEPL S +YSIP
Sbjct: 118 MMGMVSSSSTTNTTHYAPQAEIVKTIETLSPKPHQNPSFDYQPLSNNSYEPLGSANYSIP 177

Query: 61  LFNYCNNPISSCLVTNPFDQNNNFYETLKPNQMGFEFDELEYGGLNSNSFNNGLLFDEKM 120
           LFNYCNNPISSCLVTNPFDQNN+FYETLKPNQ+GFEFDELEYGGLNS SFNNGLLFDEKM
Sbjct: 178 LFNYCNNPISSCLVTNPFDQNNSFYETLKPNQVGFEFDELEYGGLNSVSFNNGLLFDEKM 237

Query: 121 KMMQQNNNGNEG 132
           KMMQQNNNGNEG
Sbjct: 238 KMMQQNNNGNEG 249

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_011657019.12.78e-10898.25transcription factor RAX1-like [Cucumis sativus] >KAE8646891.1 hypothetical prot... [more]
XP_008465353.12.05e-9088.68PREDICTED: transcription factor RAX1-like [Cucumis melo][more]
KAA0035227.12.69e-7687.88transcription factor RAX1-like [Cucumis melo var. makuwa][more]
XP_038902615.12.17e-4562.28transcription factor RAX1-like [Benincasa hispida][more]
Match NameE-valueIdentityDescription
A0A1S3CNN79.94e-9188.68transcription factor RAX1-like OS=Cucumis melo OX=3656 GN=LOC103502992 PE=4 SV=1[more]
A0A5A7T0W81.30e-7687.88Transcription factor RAX1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s... [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 258..288
NoneNo IPR availableGENE3D1.10.10.60coord: 69..142
e-value: 1.5E-19
score: 71.8
NoneNo IPR availableGENE3D1.10.10.60coord: 7..68
e-value: 7.5E-18
score: 66.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 270..288
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 264..288
NoneNo IPR availablePANTHERPTHR48000:SF36OS09G0431300 PROTEINcoord: 1..278
NoneNo IPR availablePANTHERPTHR48000OS09G0431300 PROTEINcoord: 1..278
IPR001005SANT/Myb domainSMARTSM00717santcoord: 67..115
e-value: 1.3E-12
score: 57.9
coord: 13..64
e-value: 1.7E-11
score: 54.2
IPR001005SANT/Myb domainPROSITEPS50090MYB_LIKEcoord: 63..113
score: 9.419065
IPR001005SANT/Myb domainPROSITEPS50090MYB_LIKEcoord: 9..62
score: 10.812552
IPR001005SANT/Myb domainCDDcd00167SANTcoord: 16..62
e-value: 6.79026E-9
score: 48.7258
IPR001005SANT/Myb domainCDDcd00167SANTcoord: 70..113
e-value: 4.21962E-9
score: 49.4962
IPR017930Myb domainPFAMPF00249Myb_DNA-bindingcoord: 14..62
e-value: 1.5E-12
score: 47.5
coord: 69..111
e-value: 1.9E-10
score: 40.8
IPR017930Myb domainPROSITEPS51294HTH_MYBcoord: 9..62
score: 15.60833
IPR017930Myb domainPROSITEPS51294HTH_MYBcoord: 63..117
score: 21.868675
IPR009057Homeobox-like domain superfamilySUPERFAMILY46689Homeodomain-likecoord: 11..109

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsat.G17942.T1Cucsat.G17942.T1mRNA
Cucsat.G17942.T2Cucsat.G17942.T2mRNA