Cucsat.G17440 (gene) Cucumber (B10) v3

Overview


Name	Cucsat.G17440
Type	gene
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	DNA-directed RNA polymerase subunit beta
Location	ctg27: 2418935 .. 2430043 (-)
RNA-Seq Expression	Cucsat.G17440
Synteny	Cucsat.G17440

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AGTTTCAGCGGGTTTCCATTCAAAATATTCATCGTACTTGGGTGGGTTTTTACTGTACCTTTTTGATAGATATTCCCTTGTATTTTGTTTGCTTTATGCTTATTTATTTTTAAGGTTTCTTCTTTTTTTCCTTGTATCTTGTATTTTGGAGCATTAGTCTCTTAAAAGTGTGATATCCTTTTCCAAAACGGAAAAGAAAAAAACATTTTATGCATTTAATATTCTATTGCCATTCTAAAATATGAACATTTTTCGCTTCTTGGATATGATGATTGATGAGGGTGTTAAGGGGGTGTCAACCTAGTTGAGATGTCTGGGTGTGCCTGCTTATCCTCACTTCCCCTTTCCTCTTTGTATAACCCTCATGTACATTGAGCTTTTGTCTTTCTATTTCTCAATATTATAATAATAGTGAGATTTGTTTCCTTTTCAAAAAATTAGAGAGCAGGGTTTACAGTTCAGGCAGAGCGACTTAATTTCTTGCGCTTTGTGTCTCATTTTCGTGCTGTTCATCGTGGAGCTTCCTTTGCTGGACTTCGCACTACAACTGTGCGGAAATTGCTACCTGAGTATGTTTCTCTTATGCCATTTAATAAGTTCATGGTGTCATGATTGTTTCTAGCTTTGATAATTTGGTATTCTGTAGGTCTTGGGGTTTTCTTTGTCCAGTACACACTCCTGATGGTGAACCATGCGGCTTGCTGAATCATTTAACCAGCACCTGCAGTACGTTTGCTGTTCCTTTGATGTGTCTATCTATGAATTGTTGTACATATCTGTGGGTGTGGCCCGTGTACAAGAATTTGCCATGCAGGGACTTAGATTTTATTTTTTCACTGTATAATCATTTGTGATGATCTTGGGGGAAAAAGATTGTTTTGTTACCTTCATTGACGACCATACTCGTCTATCTTGGGTTTATTGAGATGAGGAATTGCAGGACCATCTTCAACTGAGTTTTGAGTCTGCTAATTAGGGCTAACTTCACTCCCACAAGGGTCGTGTTAGCTGACCAGATTCAATAACAAGTATAGACTATTGCAAAACATAAGACTTACATTAAAGACAAGTTAAGGGAAATGTTTTAAACATGAAAAACATCATATATGCCTTAGCTGACAAATTATAATAGTTAGTACTTAGTATTACACTCGATGTTTCCCTCTCCCAAAATCCGTTTATCATTTTGGTACTTTTATTGTGATTATAAACTTTTGTGCTGGCTGTAAGTTTTTGTACACTGCTTTCTAGTAGTTTAATGGCCAGTCACTATATTTGCAACAGAGTGAATGAAAAATTCATTTGGATTCTACATCTGTCTATTTCAGGAATTACGTCACACTTCAATTCTCAAGGAAAAGTTCGAGACTTTTACAAAATAAGGACGTCTATTCTGAGTGTTCTAATTGCAGTTGGAATGATACCGTCACTACCGAAGCTTGTTCAAATGGGTCTTCCTGATTTTCTTAACGTGCTTTTAGATGGTCGAATCGTTGGTTATATATCATCCAATGAAGTAGAGAAAATTGTTGCTCATTTACGTCGGTTGAAAGTTTTATCTCCCCACGTGGTTTGTACTTGTGCATTTTTCTGCTATTGCATGTTTTTCTTTCCCATTTCTCTCATTCTTATTGGGTATGTTTCAGATTCCCGATGATCTGGAAGTTGGATATGTACCTTTGAGTATAAGTGGAGCATATCCTGGTTTATACCTTTTCACATCTCCTTCTAGATTTGTCCGACCAGTTAAAAATCTTTCAATCTCCCCTGAGGATAATCACAATATTGAACTCATTGGCCCATTTGAACAGGTTATAAGACAATTGAGACCTATTTTTAAAATTATTTGAACAGATTATAGACACTTCAAACCAGCAAGTTAAAAAAACTGACTCATTATTTTCTTGAACAGGTATTTATGGAAATACGATGCCCTGATGGGGGTGATGGTGGGAGGAAAGATGAGTTTCCTGCAACACATGAAGAAATCCATCCAACTGGGATGCTCAGTGTGGTTGCTAATCTTACCCCTTGGTCTGATCACAATCAGAGCCCACGTAATATGTACCAATGCCAGGTTTTTCTTCTCATGGATCATATGGAAATTGTGTTTAAAAATAGCTCTTGATATTTAAAGAGTAGAAAATAATTGTTTGAAATTAAAGTTCAGCATTAAAAGATGTATTTCTAAGCAGTTCATAAAATTTAAAAAATAACAGGAAGCATTTAAAATCATAGAATTTTAAGAAAATACACTCAAATGTATCCTGTTAATTTATCCAAGGTGCTTGGACTTTATTTCATTCTTAATTTTGTTTCTTTTGTATTTGTTCTTCTAACTTCTGATAATCTGAGTGTAGATGGCAAAACAAACAATGGCATTCTCCCTGCAAGCTATTCGGTACCGTGCAGATCAAAAGCTATACCATCTTCAGGTTTGTTGCCATCTTGTTTATTTTTTGTTAAAATGATTTCTCATTAGAGCAAGAGTCAGCCAAATCTCTCTGTTTTCTATCAAGCAACGGTTATTGGATAATGATTTTAATTAACATATTGGTAGTATATGCATAACAGACAGATCTGAGATTCGATTTGTTCGGAAAAACCCCTATGATCTCCAAACTTTGCCTTTAACTTTGATACAAATTTGTTAAAGCGAGGCTAATGATTAAACATATCCAAACAAAATGGAAGCTTTCGGAATTGTTGGATTTGAAGATTTTAAGATAACATTTCTCATAAAGATTTGCCCACTCCCCCTCTCCCTCTCAAACAAACAGCCTCTCATACTTAAGTTCCAATTACCACCTAGGTTCCACATAATCTGGACTTTGGTTTTTTGGTATTGAAATACTAAAACTACTCTGGACAAAAAGAATAGGCAAGTCCTCTCTCCTCTCTACTCCTTCCCAACCACTCCCTAGTTTCTCCCCAGCTTCGGCTTCCCCTAATTCCGGCAAGATAAGTAGTTTCAGACATGGAGGTGAAAAGCTGCAAAATCCTAATTCGTTTTACTGCATATGGTTTGAAAGAGGATATTTCCATATTGAAGATGTGGATTTTAGAAAAATTCTCAGTGTCTAAGCTCTAACTTGAATGGTGCATGGAAGTTATTACGAACCTAATGAAAGAACCAGAATGGAAGTTCTTTTTGGAGGACAGAAATGACGGGCGTGAATCAACAAGGCTAACCAAATTTTGAACTCCTTCAGGTTGGTTCATGAGGTGTGTAGCACGAAAAGGATCCGATAACTTCTCCTTTATTCACATCTTCTCAGGTGATTCCAAGAAGGGATGGTCTTCATTTCTTAATATGATCAAGGACTTTTTGTTGATTCATAAATACGAACAGTGGCATTTCTTCCTGCAACACGACTTGCTTAAGATGGGATCACGGCTTTTAGTTAAGAACCTTCCTCTTAACCTAGGGAGGAAAGTGTACTTTAGAGGTTTGGAAGAAATAGTTCTGGATACCCTTAACCTTATTGATTGTTCTGAAGCCAGAATCCAGGTGAGAATTTGTGGGTTCCTACCGGCAACCAGTGAGATAAAGAACACTTTAAGAGCAAGTTTCTTCCTTAATTTTGGTGATATTTAGTCGATTGATGCTCCACAGTTCATTAAAAAAGATCTTTCACTTAGTGATTTCACTAATTCTATTGATTTAAGTAGATTAAATGCAGTAGCCTTGGATGAAGAAATCTCAGTGGACCTCCCGTTAGTGGATAATAGTCTAAATATGCTGCAGGTTCTGACAATCGATAGAAACCCTTTCGAAGGAAAAAAAATATGACTGGTGCTTTACTTTCCGACTGGCCAGCCTCCTTTTCGCCGGAGAAAAAAGAAAAGAACACACTCCAAAATTGAAATTCGTGGGAGAAGAGCAACAACCACTCGTGGGAAAGAGGCAAGGAATTTATGGAGGGAAGAGAAAAGCAGTGGCAATAAAGCACTTGAAGTCAATGTTGTTTGTTCTCCCAAATCTTCATCTGTCAGCAGCCCCCTAAACGACTTCAATGCTGCCAATAAGAAAGGATCCAATTTGATGGGTCTCACAAAAGCAGCTTGTAGAGTGACGCATGGGTTCTGGTATGCCAACGAGGAAGAGGAGGAGATGGGGCCCACAAATATTAAAGATAACGATTTTTCCTTCGCCTCTAATGAAGTATTCCAACAACCTATCTCTTTGGACAACAGAAACAAAAAGAAAAGGTTAAAAGAAAAAAAGGACCAATCGGAAAATCTTCTATTCAAACAGTGTTAAGGACCTCCTGAACTTTTAGGTAATTCACTTGGTCCAAAGAAGGCAACATATTTTCCAGATCCTTGCTAGACAGATTCTTAATTAACTCTGAATGGGATGAATTGTTTGCGGACACCAGAGTTACACAACAAGCTCGATTATGCTCAGATCACTTCCCCATACTTTTAGAGGTAGTGGCTTTTAGTTGGGGGCCATTCCCTTTTCATTTCTGCAATAGTTGGCTGTTAGACAAGTAGTGCTGCAGATTCATTGAAAACTCGGATTCGGGAAGTTACCAAGGATGGTCAGGTTTCGTTCTATCTTCCAAACTTCTTTGAAAATTCAGCTGTAGAAATGGAACATTGACAGCGAAAAAGCCAAGAAATATAATAAAGAGAGCTTGCTGCAAGCTTTGGCAAATGAAGAAGATAAGAACGAGCTGGACTTGGCAACAGAGAGTAGTACCATAAAATGGATGCTGAAAGCTGACCTCCTGGAACTACATAAAAGGGAGGAAAGAGATCTTATTCAGAAAAGGAAATTAAATTGGATGAAATTAGGCGATGAGAACACCAAGTTCTTTCATCGCTTTCTATCTGCCAAAAAAAGAAGAAATCTGATTTCCGAATTAGTGAACGACCAAGTAGTTAATAGTACTCATGGTAGCCACCCCTTCCTTTGGCACACTAGTGGTAAGGAGAATTTGAGATTGAGAAGCCCATGGATTAGTATTTCAAGAGAATGGCGCAAGATTGAAGTACTAACCAATTTCAGAATTGGTAATCGCAGCAGTGTGTTTTGGACTGATCCATGGCTGGATAATATCTCTCTAAACAGCAAGTTCCCTAGATTATCTCATATTGCCCTCTTGCCTAAAGGGTCAATTTCTGAGCACTGGGATAGCCAAACTAGTTCCTGGGTGGTTTACTTTAGGAGATTAATAATACAAGAGGAGGTTGTTGACTTTCAAACACTGATGATTTCTTTAAATGGGAAAATGGTAAACTCTATCCCATATAAGAAAGTTTGGTCTAGAACCAAGTGGCTTTTTCGCTGCTAAATCCTTGGTTACTCATTTATCACTTGCTTCTCCCGTTCTTTATTCAAGAGGATTTGGAAAACTAAGAGCCCTCATGCTTCAAGGAATTTAAATGTGCCTCTTCACTGCAAGAAAAGCTTCCATCTCATTGCCTATCTACCCATATGTGCCATCTATGTTGTATAAATCAAGAAGACCTTCAACACCTTTTTTTCGAGTGTCCTTGTGCAGCAAATTGTTGGTATAGGCTGCTGCAAATTTTTAATTTCAGATGGGTTTTTTATGGCAGTTTTTGTGGAATTCTCTCTGGATCAGATTTAAAGAAAACCTCGTCAACTTTATGGTGCAATGTAGTCAAGACCTTATTAGTAGAAATATGGTTTTGAAAGAAATCAATGTGTTTTCCACAGTACGGATTCAGTATGGATTTGAGTATGCTCGAATAAATGCTTTATCATGGTGCTGCATGGTCAAAGGATTTCAGGATTACCCCACACAGGACATTCACCTCAACTGGCAAGCTTTTATTGTTTAGTCATTTTGAGTCCAGCTAAGGAGATTTAGGCAAGGGCCCTGTTTTTGCCTGGATTAGAGTTGTCTTTTTGTCTTTTGTTAGTGATGGGCTGCTGTCTTATGTTTTGGACTATTTTTACTTTCTCGATGTCATTTCATTTCTCTATTTTTGGATATGATGAGGATGCTAAGAGGGTGTCAACCTAGTTGAGATGTTTGGGTGCGTTTATTGATCTCTAGTTCTTTAATCGCTCATTGTATAACTCTTACTTTGAGCTCTACCTCATTTCTTATAATAAATAGACTTGTTTCCTTTTAAAAAATACATAACATTTCTCATAAAAAAACTGCAACATAATCTGGAACTGAAAATGAAATCTTATTATCATCCATTATATTCTTTCACAATCTTCTGGGCTGATGACAGTGCAGAAGATGTCGATATAACTAGATTCATGTATTGATGTAAATTGTAACTTGAGCCAAAATGTGAAATACACTTGATATGTTCAGGCACTTTCAGTTATTACCCGTCTTTCGTGTTTGATGCTTTTGGTTGCTTGCTTGCAATAATGTGCAAACTTCAAAATGTTTGTAGACTCCTCAAACCCCTATTGTTCGTACAAGCACATATACGAAATACAACATAGATGAATATCCAACTGGCACAAACGCAATAGTGGCAGTGTTGGCATATACTGGGTAAGAAAAATGGATTGTTGGATAAAATCAGATGGGGTTGATTTATGTTTTTTATAGTCCTAATCATTCTATTTTATTCATGATGTACGTAGTTATGACATGGAGGATGCGATGATTCTGAACAAGTCTTCTGTGGAGCGTGGAATGTTCCATGGACAAATATATCAGGTCTGTTTATCATGTGCTTGCCCTTGTGGTAAATGTTGAAGTGTAGTCTTCGTAACTACTATAATACAATTGCTCAACTTTTGCATTCTTTCGTATTTCCTCAATTCCTATCCTTCCGGTCCAGATGCTGCTATCACTGATGCTGCAATTGCGTAATCTAATAGTGAAATTGAGCTCTCTTATCAAGTAATTTCATTGAGAAAGTTATATTGTTTTCTTTCTTAAAGTGTGATGTAACTCAATCTCCGCCCACTGATATTAACTTCCCAAACAACCAAAAAAATATTGGGTGTGAAACTAAAAACTGTGAAGTTAAGAACTTTAAACTTGAACAAATTTTTTACTATAAAGCGATCCTTCTTCTGCCCTAATAATTGTATGTGACACTACCAGGCAATTTCTTGGAAAGCAAATCGTTCATTGGCACGACAGTCTATGATCACTTAGCGTAATGTTACATATTATACATAGATTTCCTTCTTTGATCTTGTGAATTCCATTCCTTAGAAATATTGTAACGTTCTCAAATCCTTATTCTTAAATTCTGTAGCAAGATTTTTCACAAGTTCAATGGCACTCCTTTGTTATTATTTGTAAAAGTAATATCTTCTGCTTATACAATGGAAATTGAGATCTTATTATTCTCCGGTTGTTTATAAAATATGGTATTACTAGGATTTGCTTGACTTTGAAGATACCCACGACTTGAACAACTTTTATAAACTGTTCAAACCAAACTCTCAGAGATTTAGTAGATGTTACTACATTCAAATTCCTTCTCAAATCGGATGGCAAAGTTCTGACAACTGCAATGGTTGTTAGGGTTTGAAGTACTGTAGACAGCTATGGTTCATAAGTGTTGGCAACGGGTAGGGTTTCTATAGGTTGTGAGGGTTAGTACGTTTACTTTGATGCCATCTCAAACTTGAGATGATTAAAATTTTGTAATATATTAAACTGTGCAACTTTGATCGTCTTATATAGAGGAGACATAATACATATGTGGAAAGAATAATGACTATGTAAACAAAATATTGACAACTAATATTTACAAACACGTGATAAAATTTACAACTGACAAATGGTTTTATGAACTATTTCTGTTAAATGATGGAGTTGATTGATAAATGCGGGGTGTGCATTCCATGTTCTTTTTCCCATGACTTATATTTATTAAATTCTTACAACACATTCTTGCTGAAACTAAATCCTTTGTTCATGCATTGTCTGATAACTTGGCAGACAGAAACTATTGACTTGTCTGATCAGGGCAATAGATCAAGTCGAAGTCAGAAGATGTTTAGGAGGAGTAATATTGATACATCTGTGCGATCTATCATAGATGCAGATGGGCTGCCTTATGTTGGTCAGGTTAGCCTTATTTTCTGTGTTGCCATCTTGTTTTTCTCCCTGGGTTTAAAGCTAACTAAATTTATGATGAGATTCAGATGATACAACCAGATGAGCCTTATTGTAGCATTTATGATGAGGTGGCTGGCACAACCAGAACCATGAAACTTAAAGGTTCAGAAGCTGTTATTGTTGATTATGTGTCTGTTGATGTAAAGAATAAGAATAACCCCCAAAAGGTAAATAGGGATCCTTGGTTATTATCTGAATTGTAACAGCACATAAATTGTTATAGTGAATTGTAACAGCACATAACTGTTTTTGTTTTTATTACTGTTTTAATTAACATTTGTGAGTGATGATGATAATTTGACCGGTTCATGATTTGAATCAAGTATTAGTGTCATGATCTTCATGGCAAACTCTTGTCTCTTTGTTATATGCTTGTTTGAGTTAGGTTATGGGAAGTTGCGTTTGTGAACTTGATATTGTAAATAGAATTACTTTTCTTGGGCTCTTTATAAGCTTGTCTGACCAAAGCTTTTGACCATCTTACCTCTTTTATCATTCCTTTGAAACAATAGTATCTTGAGAACTATGCGCTTGTGTAGGTAGATATTTTATCCTTCTTTTTTGTTCCCGTGTTTTTTTTAAGTATTTTCTACAAATAAAAATTCAACGATCATTAGCAGAGAATATCTTATTTTGAGTACTTGGTGCTCTTTCTGTTATCTTCTTACCCCCTTGGGTTTGTATTAAATACGCAGTTCTCTTTGTCCAATGTTTTTAATCAATTCAGATTTTATTTCCGTGAAAAAGTAATCTGATGAAGGCTCTTTGCTCTCCCTTTTTCTCTTTTTGAGCAGGTGAATATACGCTTCCGACGCCCTCGGAATCCAATGATTGGAGATAAATTTAGTAGTAGACATGGGCAGAAAGGTGTTTGCTCCCAGCTATGGCCAGATGTTGATATGCCATTTTGTGGAGCTACAGGAATGCGCCCGGATTTGATTATCAATCCCCATGCTTTCCCTTCAAGAATGACAATAGCAATGTTGATGGAGTCTGTCGCTGCGAAGGTAACAATATCAAGAAATGGAGTAACTATTTTTTAAAATTAATTTATAAGAAATGTGAAAATATATTGAGAAACCAGAAGGAAAAGCCTAAATCTGGGGTTCCCATATGAAATTTATAGGGTGGGGTTCATGGTTAGAAAGGGAAATTCGATGTTTTGTTATGAAGAAAAGAAATTATTATTTCGCCGAAGTTTCATTGCTACTTTTCGCATGCTTTATAAACCATTTTTTCTGGAGTTACAGTTTCAATTACTTGTTACAGGGAGGGTGTTTAAATGGAGAGTTTGTTAATGCAACACCGTTTAGGAGTTCTGTAAACAAAACGAATGCTGGAGATGAAGAGACAAACGGCGAGACACTTGTTGATGAACTTGGCTCCACGTTAATAAAAAAGGGATTTAATTACCATGGTCTTGAGGTATTGTACAGTGGAGTTTACGGAACAGAGCTAACATGTGAAATTTTTATTGGACCGGTATATTATCAGCGTCTTCGGCACATGGTTTCTGACAAATATCAGGTGATTTTCTTTTGTACTAATTTTTTAATTTACAATTGCTAAATTATCATTATTATCATTACTGTTATTATTATTATTCACACTAGCTTTGAAGTCTTAGCACTATTGGCTATATGAATGAATTAGTATTGGCCAATTCAGTGACATTGACGTCATTTTGTTCGGAAGATAGATATTCTGTTATAATCTTTCATTATTTCATTTCATGTATCTTTGTTAGCGTTTAAAGCAGTGCGACGGCTTGGGTCAGAATTGGTCGAAATGCCAAAGCATGGGAACATTTTGTAATTAAATCGAAGTATAACTATATCTAGAATTGTGGATATATGTCTAATAGTGTGTTACATGCCTAGAGTTCAAATGACCGAATTTTTGGCATCTTCTACCCTACATACTATCATTTATCTAGTTATGAGAACTATGGTGAAATTTAACAAAATATTGCAATGTTTTGTTGTGATCCACTATACACTAATAAATGATTTCGGTGTTGTGATATCTATAACATCTAGAGATCCGAAGTCTCAATAGTGCATCATTATCTATTTTCTCACTCAACGCATGCGACAAGATCTGTTTGTGTCAAGTGTAGGCGCTTGAGATTTTTCTCTTGTTGAGTTTAAGCATTTCTGGGTCTCTGGTGTTATCATGGACCATTGATTCAGTTTTGTGTTGCTATGATCAGGTTCGTTCCACTGGAACTGTGGATCAAGTAACTCGGCAACCCATCAAAGGTAGAAAAAAGGGTGGTGGTATACGCTTTGGTGAAATGGAGCGCGACTCAATGCTAGCTCATGGAGCATCATACTTGTTACATGATAGGCTTCATACATGTTCTGATCATCACATTGCTGATGTATGTTCACTCTGCGGCAGCGTTCTAACATCATCTTTTGTCCAGCCCCCAAAGCGTGCTGTGCGTGAAATAGGGGGGCTTCCCCCTGGGAAGGCTCCTAAAAGGGTTACATGTCATGCTTGCAAAACAAGTAAAGGTATGGAGACAGTAGCGATGCCTTACGTCTTCAAGTACTTGGCTGCAGAGTTGGCAGCGATGAACATAAAAATGACTCTCCAACTAAGTAGTGGAGCAGCCTGATTTGAACAATGCTCATCTATTAAGATCTCGTCCTCCGGATTTGCTTGGTTCATAAGTGAGATCAGACTCAAGACCGGTTTCATAAAGACGACTTGGCTGCTCTCGAGTAAAAATTTATTGTCCTGGAGGTGATCAAATTTTGAGTGCTATTTTTTCGTTTTAGGGTCTGAGGTATTGTTAGTTCCCATTTTTGTACTCTTTAAACCCTGAGCTAATGAGTTCTCTTTGTTTTATTTGTCATAATTCATTAATTTGTATTCCTTCACAAACCATGGTGTAACATAAACGAATGATTTTGTAACGTCTAATGAATCTTATGTATTATAATTTATAAAAATTGTTCCATTATTAGAGTTGTTTCATTGTTCTGAAGTGGATGTATGGTGCTTCATCAGAAAC

Coding sequence (CDS)

TTTCAGCGGGTTTCCATTCAAAATATTCATCGTACTTGGAGAGCAGGGTTTACAGTTCAGGCAGAGCGACTTAATTTCTTGCGCTTTGTGTCTCATTTTCGTGCTGTTCATCGTGGAGCTTCCTTTGCTGGACTTCGCACTACAACTGTGCGGAAATTGCTACCTGAGTCTTGGGGTTTTCTTTGTCCAGTACACACTCCTGATGGTGAACCATGCGGCTTGCTGAATCATTTAACCAGCACCTGCAGAATTACGTCACACTTCAATTCTCAAGGAAAAGTTCGAGACTTTTACAAAATAAGGACGTCTATTCTGAGTGTTCTAATTGCAGTTGGAATGATACCGTCACTACCGAAGCTTGTTCAAATGGGTCTTCCTGATTTTCTTAACGTGCTTTTAGATGGTCGAATCGTTGGTTATATATCATCCAATGAAGTAGAGAAAATTGTTGCTCATTTACGTCGGTTGAAAGTTTTATCTCCCCACGTGATTCCCGATGATCTGGAAGTTGGATATGTACCTTTGAGTATAAGTGGAGCATATCCTGGTTTATACCTTTTCACATCTCCTTCTAGATTTGTCCGACCAGTTAAAAATCTTTCAATCTCCCCTGAGGATAATCACAATATTGAACTCATTGGCCCATTTGAACAGGTATTTATGGAAATACGATGCCCTGATGGGGGTGATGGTGGGAGGAAAGATGAGTTTCCTGCAACACATGAAGAAATCCATCCAACTGGGATGCTCAGTGTGGTTGCTAATCTTACCCCTTGGTCTGATCACAATCAGAGCCCACGTAATATGTACCAATGCCAGATGGCAAAACAAACAATGGCATTCTCCCTGCAAGCTATTCGGTACCGTGCAGATCAAAAGCTATACCATCTTCAGACTCCTCAAACCCCTATTGTTCGTACAAGCACATATACGAAATACAACATAGATGAATATCCAACTGGCACAAACGCAATAGTGGCAGTGTTGGCATATACTGGTTATGACATGGAGGATGCGATGATTCTGAACAAGTCTTCTGTGGAGCGTGGAATGTTCCATGGACAAATATATCAGACAGAAACTATTGACTTGTCTGATCAGGGCAATAGATCAAGTCGAAGTCAGAAGATGTTTAGGAGGAGTAATATTGATACATCTGTGCGATCTATCATAGATGCAGATGGGCTGCCTTATGTTGGTCAGATGATACAACCAGATGAGCCTTATTGTAGCATTTATGATGAGGTGGCTGGCACAACCAGAACCATGAAACTTAAAGGTTCAGAAGCTGTTATTGTTGATTATGTGTCTGTTGATGTAAAGAATAAGAATAACCCCCAAAAGGTGAATATACGCTTCCGACGCCCTCGGAATCCAATGATTGGAGATAAATTTAGTAGTAGACATGGGCAGAAAGGTGTTTGCTCCCAGCTATGGCCAGATGTTGATATGCCATTTTGTGGAGCTACAGGAATGCGCCCGGATTTGATTATCAATCCCCATGCTTTCCCTTCAAGAATGACAATAGCAATGTTGATGGAGTCTGTCGCTGCGAAGGGAGGGTGTTTAAATGGAGAGTTTGTTAATGCAACACCGTTTAGGAGTTCTGTAAACAAAACGAATGCTGGAGATGAAGAGACAAACGGCGAGACACTTGTTGATGAACTTGGCTCCACGTTAATAAAAAAGGGATTTAATTACCATGGTCTTGAGGTATTGTACAGTGGAGTTTACGGAACAGAGCTAACATGTGAAATTTTTATTGGACCGGTATATTATCAGCGTCTTCGGCACATGGTTTCTGACAAATATCAGGTTCGTTCCACTGGAACTGTGGATCAAGTAACTCGGCAACCCATCAAAGGTAGAAAAAAGGGTGGTGGTATACGCTTTGGTGAAATGGAGCGCGACTCAATGCTAGCTCATGGAGCATCATACTTGTTACATGATAGGCTTCATACATGTTCTGATCATCACATTGCTGATGTATGTTCACTCTGCGGCAGCGTTCTAACATCATCTTTTGTCCAGCCCCCAAAGCGTGCTGTGCGTGAAATAGGGGGGCTTCCCCCTGGGAAGGCTCCTAAAAGGGTTACATGTCATGCTTGCAAAACAAGTAAAGGTATGGAGACAGTAGCGATGCCTTACGTCTTCAAGTACTTGGCTGCAGAGTTGGCAGCGATGAACATAAAAATGACTCTCCAACTAAGTAGTGGAGCAGCCTGA

Protein sequence

FQRVSIQNIHRTWRAGFTVQAERLNFLRFVSHFRAVHRGASFAGLRTTTVRKLLPESWGFLCPVHTPDGEPCGLLNHLTSTCRITSHFNSQGKVRDFYKIRTSILSVLIAVGMIPSLPKLVQMGLPDFLNVLLDGRIVGYISSNEVEKIVAHLRRLKVLSPHVIPDDLEVGYVPLSISGAYPGLYLFTSPSRFVRPVKNLSISPEDNHNIELIGPFEQVFMEIRCPDGGDGGRKDEFPATHEEIHPTGMLSVVANLTPWSDHNQSPRNMYQCQMAKQTMAFSLQAIRYRADQKLYHLQTPQTPIVRTSTYTKYNIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVERGMFHGQIYQTETIDLSDQGNRSSRSQKMFRRSNIDTSVRSIIDADGLPYVGQMIQPDEPYCSIYDEVAGTTRTMKLKGSEAVIVDYVSVDVKNKNNPQKVNIRFRRPRNPMIGDKFSSRHGQKGVCSQLWPDVDMPFCGATGMRPDLIINPHAFPSRMTIAMLMESVAAKGGCLNGEFVNATPFRSSVNKTNAGDEETNGETLVDELGSTLIKKGFNYHGLEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKYQVRSTGTVDQVTRQPIKGRKKGGGIRFGEMERDSMLAHGASYLLHDRLHTCSDHHIADVCSLCGSVLTSSFVQPPKRAVREIGGLPPGKAPKRVTCHACKTSKGMETVAMPYVFKYLAAELAAMNIKMTLQLSSGAA

Homology

[Close]

BLAST of Cucsat.G17440 vs. ExPASy Swiss-Prot
Match: F4I366 (DNA-directed RNA polymerase I subunit 2 OS=Arabidopsis thaliana OX=3702 GN=NRPA2 PE=2 SV=1)

HSP 1 Score: 1122.8 bits (2903), Expect = 0.0e+00
Identity = 549/725 (75.72%), Postives = 629/725 (86.76%), Query Frame = 0


Query: 14   RAGFTVQAERLNFLRFVSHFRAVHRGASFAGLRTTTVRKLLPESWGFLCPVHTPDGEPCG 73
            RAG+TVQAERLNFLRF+S FRAVHRGASFAGLRTTTVRKLLPESWGFLCPVHTPDG PCG
Sbjct: 452  RAGYTVQAERLNFLRFLSFFRAVHRGASFAGLRTTTVRKLLPESWGFLCPVHTPDGTPCG 511

Query: 74   LLNHLTSTCRITSHFNSQGKVRDFYKIRTSILSVLIAVGMIPSLPKLVQMGLPDFLNVLL 133
            LLNH+T T RITS F+S+G +RDF KIR S++ VL   GM+PSLPKLV+ G P  ++VLL
Sbjct: 512  LLNHMTRTSRITSQFDSKGNIRDFLKIRKSVVDVLTGAGMVPSLPKLVRAGPPKVIHVLL 571

Query: 134  DGRIVGYISSNEVEKIVAHLRRLKVLSPHVIPDDLEVGYVPLSISGAYPGLYLFTSPSRF 193
            DG++VG +SSN V K+V+++RRLKV +P VIP+DLEVGYVP S+ G+YPGLYL + P+RF
Sbjct: 572  DGQVVGTLSSNLVTKVVSYIRRLKVEAPSVIPEDLEVGYVPTSMGGSYPGLYLASCPARF 631

Query: 194  VRPVKNLSISPEDNHNIELIGPFEQVFMEIRCPDGGDGGRKDEFPATHEEIHPTGMLSVV 253
            +RPVKN+SI P D  NIELIGPFEQVFMEI CPDGG+GGR +   ATHEEIHPTGM+SVV
Sbjct: 632  IRPVKNISI-PSD--NIELIGPFEQVFMEISCPDGGNGGRNNSSLATHEEIHPTGMISVV 691

Query: 254  ANLTPWSDHNQSPRNMYQCQMAKQTMAFSLQAIRYRADQKLYHLQTPQTPIVRTSTYTKY 313
            ANLTPWSDHNQSPRNMYQCQMAKQTMA+S QA+++RADQK+YHLQTPQ+P+VRT TYT Y
Sbjct: 692  ANLTPWSDHNQSPRNMYQCQMAKQTMAYSTQALQFRADQKIYHLQTPQSPVVRTKTYTTY 751

Query: 314  NIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVERGMFHGQIYQTETIDLSDQGNRSSR 373
            +IDE PTGTNAIVAVLA+TG+DMEDAMILNKSSVERGM HGQIYQTE IDLSDQ +R   
Sbjct: 752  SIDENPTGTNAIVAVLAHTGFDMEDAMILNKSSVERGMCHGQIYQTENIDLSDQNSRFDS 811

Query: 374  SQKMFRRSNIDTSVRSIIDADGLPYVGQMIQPDEPYCSIYDEVAGTTRTMKLKGSEAVIV 433
              K FRRS  + +    IDADGLP VGQ + PDEPYCSIYDEV   TR MK KG++ VIV
Sbjct: 812  GSKSFRRST-NKAEHFRIDADGLPSVGQKLYPDEPYCSIYDEVTNKTRHMKRKGTDPVIV 871

Query: 434  DYVSVDVKNKNNPQKVNIRFRRPRNPMIGDKFSSRHGQKGVCSQLWPDVDMPFCGATGMR 493
            D+VSVD+K+K +PQ+ NIRFR  RNP+IGDKFSSRHGQKGVCSQLWPD+DMPF G TGMR
Sbjct: 872  DFVSVDMKSKKHPQRANIRFRHARNPIIGDKFSSRHGQKGVCSQLWPDIDMPFNGVTGMR 931

Query: 494  PDLIINPHAFPSRMTIAMLMESVAAKGGCLNGEFVNATPFRSSVNKTNAGDEETNGETLV 553
            PDLIINPHAFPSRMTIAML+ES+AAKGG L+G+FV+ATPFR +V KTN G+EE+    LV
Sbjct: 932  PDLIINPHAFPSRMTIAMLLESIAAKGGSLHGKFVDATPFRDAVKKTN-GEEESKSSLLV 991

Query: 554  DELGSTLIKKGFNYHGLEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKYQVRSTGTVD 613
            D+LGS L +KGFN++G E LYSG  G EL CEIF+GPVYYQRLRHMVSDK+QVRSTG VD
Sbjct: 992  DDLGSMLKEKGFNHYGTETLYSGYLGVELKCEIFMGPVYYQRLRHMVSDKFQVRSTGQVD 1051

Query: 614  QVTRQPIKGRKKGGGIRFGEMERDSMLAHGASYLLHDRLHTCSDHHIADVCSLCGSVLTS 673
            Q+T QPIKGRK+GGGIRFGEMERDS+LAHGASYLLHDRLHT SDHHIADVCSLCGS+LTS
Sbjct: 1052 QLTHQPIKGRKRGGGIRFGEMERDSLLAHGASYLLHDRLHTSSDHHIADVCSLCGSLLTS 1111

Query: 674  SFVQ-PPKRAVREIGGLPPGKAPKRVTCHACKTSKGMETVAMPYVFKYLAAELAAMNIKM 733
            S V    K+ ++EIG LPPG+ PK+VTC++CKTSKGMETVAMPYVF+YLAAELA+MNIKM
Sbjct: 1112 SVVNVQQKKLIQEIGKLPPGRTPKKVTCYSCKTSKGMETVAMPYVFRYLAAELASMNIKM 1171

Query: 734  TLQLS 738
            TLQLS
Sbjct: 1172 TLQLS 1171

[Close]

BLAST of Cucsat.G17440 vs. ExPASy Swiss-Prot
Match: B8JKD7 (DNA-directed RNA polymerase I subunit RPA2 OS=Danio rerio OX=7955 GN=polr1b PE=3 SV=1)

HSP 1 Score: 659.4 bits (1700), Expect = 4.6e-188
Identity = 357/727 (49.11%), Postives = 462/727 (63.55%), Query Frame = 0


Query: 15   AGFTVQAERLNFLRFVSHFRAVHRGASFAGLRTTTVRKLLPESWGFLCPVHTPDGEPCGL 74
            +G  V A++LNF+R++SHFR VHRGA+FA +RTTTVRKLLPESWGFLCPVHTPDGEPCGL
Sbjct: 449  SGLCVVADKLNFIRYLSHFRCVHRGAAFAKMRTTTVRKLLPESWGFLCPVHTPDGEPCGL 508

Query: 75   LNHLTSTCRITSHFNSQGKVRDFYKIRTSILSVLIAVGMIPSLPKLVQMGLPDFLNVLLD 134
            +NH+T+ C I         V   Y   TS L  L+    + +          D   V+LD
Sbjct: 509  MNHMTAHCEI---------VAPVYP--TSTLPGLLCSLGVNAADGNPGQAYSDCYPVILD 568

Query: 135  GRIVGYISSNEVEKIVAHLRRLKVLSPHVIPDDLEVGYVP-LSISGAYPGLYLFTSPSRF 194
            G ++G++       ++  LRR KVL    +P   E+  VP    +  YPGLYLFT+P R 
Sbjct: 569  GAMIGWVEKEVAPSVIESLRRFKVLGEKKVPPWTEIVLVPQTGKASLYPGLYLFTTPCRM 628

Query: 195  VRPVKNLSISPEDNHNIELIGPFEQVFMEIRCPDGGDGGRKDEFPATHEEIHPTGMLSVV 254
            VR V+NLS+  +     ELIG FEQV++ +    G      ++   TH+E+ P  MLSVV
Sbjct: 629  VRTVRNLSLGKQ-----ELIGIFEQVYLNV----GIFEKEIEDGVTTHQELFPHSMLSVV 688

Query: 255  ANLTPWSDHNQSPRNMYQCQMAKQTMAFSLQAIRYRADQKLYHLQTPQTPIVRTSTYTKY 314
            A   P+SDHNQSPRNMYQCQM+KQTM F L + +YR+D KLY LQTPQ+P+VR + Y  Y
Sbjct: 689  AEFIPFSDHNQSPRNMYQCQMSKQTMGFPLHSYQYRSDNKLYRLQTPQSPLVRPAMYDHY 748

Query: 315  NIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVERGMFHGQIYQTETIDLSDQGNRSSR 374
            ++D YP GTNAIVAV++YTGYDMEDAMI+NKSS ERG  HG +Y+TE IDLS++      
Sbjct: 749  DVDNYPIGTNAIVAVISYTGYDMEDAMIVNKSSWERGFAHGSVYKTEIIDLSEK--VKGD 808

Query: 375  SQKMFRRSNIDTSVRSIIDADGLPYVGQMIQPDEPYCSIYDEVAGTTRTMKLKGSEAVIV 434
               +F     D  V   +DADGLP++G +++  +P+        G +     K  E+ +V
Sbjct: 809  DSIVFGVKPGDPKVMGKLDADGLPFIGSVLKYGDPFYGYISLNTGQSHVYFYKYQESCVV 868

Query: 435  DYVSV--DVKNKNNPQKVNIRFRRPRNPMIGDKFSSRHGQKGVCSQLWPDVDMPFCGATG 494
            D + V  +       +++ +  R PRNP IGDKF+SRHGQKG+ S+LWP  DMPF   +G
Sbjct: 869  DNIKVCSNETGTGRFKRICVTSRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFT-ESG 928

Query: 495  MRPDLIINPHAFPSRMTIAMLMESVAAKGGCLNGEFVNATPFRSSVNKTNAGDEETNGET 554
            M PD++ NPH FPSRMTI ML+ES+A K   L+G   +ATPF  S        EE +   
Sbjct: 929  MSPDILFNPHGFPSRMTIGMLIESMAGKSASLHGLCHDATPFTFS--------EENSA-- 988

Query: 555  LVDELGSTLIKKGFNYHGLEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKYQVRSTGT 614
             ++  G  L   G+NY+G E LYSG+ G EL  +IFIG VYYQRLRHMVSDK+QVR+TG 
Sbjct: 989  -LEHFGELLKAAGYNYYGTERLYSGLSGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGA 1048

Query: 615  VDQVTRQPIKGRKKGGGIRFGEMERDSMLAHGASYLLHDRLHTCSDHHIADVCSLCGSVL 674
             D+VT QP+ GR   GGIRFGEMERD++LAHG S+LLHDRL  CSD  +A VC  CGS+L
Sbjct: 1049 RDKVTNQPMGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAQVCMDCGSLL 1108

Query: 675  TSSFVQPPKR--AVREIGGLPPGKAPKRVTCHACKTSKGMETVAMPYVFKYLAAELAAMN 734
            +    +PP    A R           ++  C  C  S  +ETV++PYVFKY  AELAAMN
Sbjct: 1109 SPLLEKPPPNWSATRH----------RKTICLLCNKSDSIETVSVPYVFKYFVAELAAMN 1131

Query: 735  IKMTLQL 737
            IK+ L +
Sbjct: 1169 IKIKLDV 1131

[Close]

BLAST of Cucsat.G17440 vs. ExPASy Swiss-Prot
Match: Q9H9Y6 (DNA-directed RNA polymerase I subunit RPA2 OS=Homo sapiens OX=9606 GN=POLR1B PE=1 SV=2)

HSP 1 Score: 656.8 bits (1693), Expect = 3.0e-187
Identity = 363/731 (49.66%), Postives = 466/731 (63.75%), Query Frame = 0


Query: 15   AGFTVQAERLNFLRFVSHFRAVHRGASFAGLRTTTVRKLLPESWGFLCPVHTPDGEPCGL 74
            +G  V A++LNF+R++SHFR VHRGA FA +RTTTVR+LLPESWGFLCPVHTPDGEPCGL
Sbjct: 451  SGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVRRLLPESWGFLCPVHTPDGEPCGL 510

Query: 75   LNHLTSTCRITSHFNSQGKVRDFYKIRTSILSVLIAVGMIPSLPKLVQMGLPDFLNVLLD 134
            +NHLT+ C + + F              SI ++L  +G+ P +         +   VLLD
Sbjct: 511  MNHLTAVCEVVTQF----------VYTASIPALLCNLGVTP-IDGAPHRSYSECYPVLLD 570

Query: 135  GRIVGYISSNEVEKIVAHLRRLKVLSPHVIPDDLEVGYVPLS-ISGAYPGLYLFTSPSRF 194
            G +VG++  +    I   LR  KVL    IP  +EV  +P++     YPGL+LFT+P R 
Sbjct: 571  GVMVGWVDKDLAPGIADSLRHFKVLREKRIPPWMEVVLIPMTGKPSLYPGLFLFTTPCRL 630

Query: 195  VRPVKNLSISPEDNHNIELIGPFEQVFMEIRCPDGGDGGRKDEFPA---THEEIHPTGML 254
            VRPV+NL++  E     ELIG  EQ+FM +          +DE  A   TH+E+ P  +L
Sbjct: 631  VRPVQNLALGKE-----ELIGTMEQIFMNVAI-------FEDEVFAGVTTHQELFPHSLL 690

Query: 255  SVVANLTPWSDHNQSPRNMYQCQMAKQTMAFSLQAIRYRADQKLYHLQTPQTPIVRTSTY 314
            SV+AN  P+SDHNQSPRNMYQCQM KQTM F L   + R+D KLY LQTPQ+P+VR S Y
Sbjct: 691  SVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRPSMY 750

Query: 315  TKYNIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVERGMFHGQIYQTETIDLSDQGNR 374
              Y++D YP GTNAIVAV++YTGYDMEDAMI+NK+S ERG  HG +Y++E IDLS++  +
Sbjct: 751  DYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEK-IK 810

Query: 375  SSRSQKMFRRSNIDTSVRSIIDADGLPYVGQMIQPDEPYCSIYDEVAGTTRTMKLKGSEA 434
               S  +F     D  V   +D DGLP++G  +Q  +PY S  +   G +  M  K  E 
Sbjct: 811  QGDSSLVFGIKPGDPRVLQKLDDDGLPFIGAKLQYGDPYYSYLNLNTGESFVMYYKSKEN 870

Query: 435  VIVDYVSVDVKNKNNPQK---VNIRFRRPRNPMIGDKFSSRHGQKGVCSQLWPDVDMPFC 494
             +VD + V   N     K   V I  R PRNP IGDKF+SRHGQKG+ S+LWP  DMPF 
Sbjct: 871  CVVDNIKV-CSNDTGSGKFKCVCITMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFT 930

Query: 495  GATGMRPDLIINPHAFPSRMTIAMLMESVAAKGGCLNGEFVNATPFRSSVNKTNAGDEET 554
              +GM PD++ NPH FPSRMTI ML+ES+A K   L+G   +ATPF  S        EE 
Sbjct: 931  -ESGMVPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFIFS--------EEN 990

Query: 555  NGETLVDELGSTLIKKGFNYHGLEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKYQVR 614
            +    ++  G  L   G+N++G E LYSG+ G EL  +IFIG VYYQRLRHMVSDK+QVR
Sbjct: 991  SA---LEYFGEMLKAAGYNFYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVR 1050

Query: 615  STGTVDQVTRQPIKGRKKGGGIRFGEMERDSMLAHGASYLLHDRLHTCSDHHIADVCSLC 674
            +TG  D+VT QPI GR   GGIRFGEMERD++LAHG S+LLHDRL  CSD  +A VC  C
Sbjct: 1051 TTGARDRVTNQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKC 1110

Query: 675  GSVLTSSFVQPPK--RAVREIGGLPPGKAPKRVTCHACKTSKGMETVAMPYVFKYLAAEL 734
            GS+L+    +PP    A+R           ++  C  C  S  ++TV++PYVF+Y  AEL
Sbjct: 1111 GSLLSPLLEKPPPSWSAMRN----------RKYNCTLCSRSDTIDTVSVPYVFRYFVAEL 1134

Query: 735  AAMNIKMTLQL 737
            AAMNIK+ L +
Sbjct: 1171 AAMNIKVKLDV 1134

[Close]

BLAST of Cucsat.G17440 vs. ExPASy Swiss-Prot
Match: Q9P7X8 (Probable DNA-directed RNA polymerase I subunit RPA2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rpa2 PE=1 SV=2)

HSP 1 Score: 654.8 bits (1688), Expect = 1.1e-186
Identity = 364/762 (47.77%), Postives = 479/762 (62.86%), Query Frame = 0


Query: 16   GFTVQAERLNFLRFVSHFRAVHRGASFAGLRTTTVRKLLPESWGFLCPVHTPDGEPCGLL 75
            G+TV AE+LNF RF+SHFR VHRGA FA L+TTTVRKLLPE+WGF+CPVHTPDG PCGLL
Sbjct: 459  GYTVVAEKLNFYRFLSHFRMVHRGAFFAELKTTTVRKLLPEAWGFMCPVHTPDGSPCGLL 518

Query: 76   NHLTSTCRITSHFNSQGKVRDFYKIRTSILSVLIAVGMIPSLPKLVQMGLPDFLNVLLDG 135
            NHL   C I +H +            + I S+L+++G+ P  P +V      +  V LDG
Sbjct: 519  NHLARKCEIVTHPSDV----------SQIPSLLLSLGVDP--PSVVGHE-SGWGCVQLDG 578

Query: 136  RIVGYISSNEVEKIVAHLRRLKV-----------LSPHVIPDDLEVGYVPLSISGAYPGL 195
            +IVG+ +    + +   LR +K+             P  +P DLE+GYVP S +G YPGL
Sbjct: 579  KIVGWCTYKLAKHVADVLRLMKIEYAVKLRNGTATEPAKVPLDLEIGYVPPSHNGQYPGL 638

Query: 196  YLFTSPSRFVRPVKNLSISPEDNHNIELIGPFEQVFMEIRCPDGGDGGRKDEFP--ATHE 255
            YLF++P+R VRPVK++S        ++++GPFEQV+M+I C        K+  P  +TH 
Sbjct: 639  YLFSNPARMVRPVKHISTG-----ELDMLGPFEQVYMDIAC------FPKEIVPKVSTHV 698

Query: 256  EIHPTGMLSVVANLTPWSDHNQSPRNMYQCQMAKQTMAFSLQAIRYRADQKLYHLQTPQT 315
            E  PT +LS+VAN+TP+SD NQSPRNMYQCQM KQTM     A+RYR D KLY LQT QT
Sbjct: 699  EYSPTNVLSIVANMTPFSDFNQSPRNMYQCQMGKQTMGTPGTALRYRTDNKLYRLQTGQT 758

Query: 316  PIVRTSTYTKYNIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVERGMFHGQIYQTETI 375
            P+VR   +  Y +D YP GTNA+VAV++YTGYDMEDAMILNKS+ ERG  +G +Y+ E+ 
Sbjct: 759  PVVRPKLHNTYGLDHYPNGTNAVVAVISYTGYDMEDAMILNKSAHERGFGYGTVYKGESF 818

Query: 376  DLSDQGNRSSRSQKMFRRSNIDTSVR---SIIDADGLPYVGQMIQPDEPYCSIYDEVAGT 435
            DLS +  R       F  +   T  R     +DADGLP++G  ++  +P  + YDE  G 
Sbjct: 819  DLSQKRRRGEPVVHHFGFAPGSTPRREWLQKLDADGLPFIGIKLEDGDPIVAYYDESTGQ 878

Query: 436  TRTMKLKGSEAVIVDYVSV---DVKNKNNPQKVNIRFRRPRNPMIGDKFSSRHGQKGVCS 495
                   G+E   VD V +   DV   +  Q+++++ R  R+P+IGDKFSSRHGQKG+CS
Sbjct: 879  NFIETYHGTEPGFVDEVRLLGNDV-GDSECQQIHVKLRITRSPIIGDKFSSRHGQKGICS 938

Query: 496  QLWPDVDMPFCGATGMRPDLIINPHAFPSRMTIAMLMESVAAKGGCLNGEFVNATPFRSS 555
            Q WP VDMPF   +GM+PD+IINPHAFPSRMTI M +ES+A K G  +G   ++TPF  S
Sbjct: 939  QKWPTVDMPFT-ESGMQPDIIINPHAFPSRMTIGMFIESLAGKAGACHGLAQDSTPFIYS 998

Query: 556  VNKTNAGDEETNGETLVDELGSTLIKKGFNYHGLEVLYSGVYGTELTCEIFIGPVYYQRL 615
              +T A           D  G  L+K G+NYHG E +YSG+ G E+  +I+IG VYYQRL
Sbjct: 999  EQQTAA-----------DYFGEQLVKAGYNYHGNEPMYSGITGQEMKADIYIGVVYYQRL 1058

Query: 616  RHMVSDKYQVRSTGTVDQVTRQPIKGRKKGGGIRFGEMERDSMLAHGASYLLHDRLHTCS 675
            RHMVSDK+QVR+TG +  +TRQP+KGRK+ GGIRFGEMERD+++ HG S+L+ DRL  CS
Sbjct: 1059 RHMVSDKFQVRTTGPIHNLTRQPVKGRKRAGGIRFGEMERDAVIGHGTSFLMQDRLMNCS 1118

Query: 676  DHHIADVCSLCGSVLTSSFVQPPKRAVREIGGLPPGKAPKRVTCHAC-KTSKGME----- 735
            D+  + VC  CGS+++          +  I     G A   V C +C K + G+E     
Sbjct: 1119 DYAQSWVCRDCGSIIS---------IMSTISMNGVGSA-SEVRCRSCAKPALGLEDTSDI 1173

Query: 736  ----------------TVAMPYVFKYLAAELAAMNIKMTLQL 737
                             +A+P VF YL AEL AMNIKM L++
Sbjct: 1179 WQDGSGKKFVGGTNTTLIALPSVFNYLTAELTAMNIKMMLEV 1173

[Close]

BLAST of Cucsat.G17440 vs. ExPASy Swiss-Prot
Match: Q5REE8 (DNA-directed RNA polymerase I subunit RPA2 OS=Pongo abelii OX=9601 GN=POLR1B PE=2 SV=1)

HSP 1 Score: 650.6 bits (1677), Expect = 2.2e-185
Identity = 362/732 (49.45%), Postives = 463/732 (63.25%), Query Frame = 0


Query: 15   AGFTVQAERLNFLRFVSHFRAVHRGASFAGLRTTTVRKLLPESWGFLCPVHTPDGEPCGL 74
            +G  V A++LNF+R++SHFR VHRGA FA +RTTTVR+LLPESWGFLCPVHTPDGEPCGL
Sbjct: 451  SGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVRRLLPESWGFLCPVHTPDGEPCGL 510

Query: 75   LNHLTSTCRITSHFNSQGKVRDFYKIRTSILSVLIAVGMIPSLPKLVQMGLPDFLNVLLD 134
            +NHLT+ C + + F              SI ++L  +G+ P +         +   VLLD
Sbjct: 511  MNHLTAVCEVVTQF----------VYTASIPALLCNLGVTP-IDGAPHRSYSECYPVLLD 570

Query: 135  GRIVGYISSNEVEKIVAHLRRLKVLSPHVIPDDLEVGYVPLS-ISGAYPGLYLFTSPSRF 194
            G +VG++       I   LR  KVL    IP   EV  +P++     YPGL+LFT+P R 
Sbjct: 571  GVMVGWVDKELAPGIADSLRHFKVLREKRIPPWTEVVLIPMTGKPSLYPGLFLFTTPCRL 630

Query: 195  VRPVKNLSISPEDNHNIELIGPFEQVFMEIRCPDGGDGGRKDEFPA---THEEIHPTGML 254
            VRPV+NL +  E     ELIG  EQ+FM +          +DE  A   TH+E+ P  +L
Sbjct: 631  VRPVQNLELGKE-----ELIGTMEQIFMNVAI-------FEDEVFAGVTTHQELFPHSLL 690

Query: 255  SVVANLTPWSDHNQSPRNMYQCQMAKQTMAFSLQAIRYRADQKLYHLQTPQTPIVRTSTY 314
            SV+AN  P+SDHNQSPRNMYQCQM KQTM F L   + R+D KLY LQTPQ+P+VR S Y
Sbjct: 691  SVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRPSMY 750

Query: 315  TKYNIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVERGMFHGQIYQTETIDLSDQGNR 374
              Y++D YP GTNAIVAV++YTGYDMEDAMI+NK+S ERG  HG +Y++E IDLS++  +
Sbjct: 751  DYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEK-IK 810

Query: 375  SSRSQKMFRRSNIDTSVRSIIDADGLPYVGQMIQPDEPYCSIYDEVAGTTRTMKLKGSEA 434
               S  +F     D  +   +D DGLP++G  +Q  +PY S  +   G +  M  K  E 
Sbjct: 811  QGDSSLVFGMKPGDPRILQKLDDDGLPFIGAKLQYGDPYYSYLNLNTGESFVMYYKSKEN 870

Query: 435  VIVDYVSVDVKNKNNPQK---VNIRFRRPRNPMIGDKFSSRHGQKGVCSQLWPDVDMPFC 494
             +VD + V   N     K   V I  R PRNP IGDKF+SRHGQKG+ S+LWP  DMPF 
Sbjct: 871  CVVDNIKV-CSNDTGSGKFKCVCITMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFT 930

Query: 495  GATGMRPDLIINPHAFPSRMTIAMLMESVAAKGGCLNGEFVNATPFRSSVNKTNAGDEET 554
              +GM PD++ NPH FPSRMTI ML+ES+A K   L+G   +ATPF  S        EE 
Sbjct: 931  -ESGMVPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFIFS--------EEN 990

Query: 555  NGETLVDELGSTLIKKGFNYHGLEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKYQVR 614
            +    ++  G  L   G+N++G E LYSG+ G EL  +IFIG VYYQRLRHMVSDK+QVR
Sbjct: 991  SA---LEYFGEMLKAAGYNFYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVR 1050

Query: 615  STGTVDQVTRQPIKGRKKGGGIRFGEMERDSMLAHGAS-YLLHDRLHTCSDHHIADVCSL 674
            +TG  D+VT QPI GR   GGIRFGEMERD++LAHG S +LLHDRL  CSD  +A VC  
Sbjct: 1051 TTGARDRVTNQPIGGRNVQGGIRFGEMERDALLAHGTSFFLLHDRLFNCSDRSVAHVCVK 1110

Query: 675  CGSVLTSSFVQPPK--RAVREIGGLPPGKAPKRVTCHACKTSKGMETVAMPYVFKYLAAE 734
            CGS+L+    +PP    A+R           ++  C  C  S  ++TV++PYVF+Y  AE
Sbjct: 1111 CGSLLSPLLEKPPPSWSAMRN----------RKYNCTLCNRSDTIDTVSVPYVFRYFVAE 1135

Query: 735  LAAMNIKMTLQL 737
            LAAMNIK+ L +
Sbjct: 1171 LAAMNIKVKLDV 1135

[Close]

BLAST of Cucsat.G17440 vs. NCBI nr
Match: XP_004146776.1 (DNA-directed RNA polymerase I subunit 2 [Cucumis sativus])

HSP 1 Score: 1478 bits (3826), Expect = 0.0
Identity = 728/728 (100.00%), Postives = 728/728 (100.00%), Query Frame = 0


Query: 14   RAGFTVQAERLNFLRFVSHFRAVHRGASFAGLRTTTVRKLLPESWGFLCPVHTPDGEPCG 73
            RAGFTVQAERLNFLRFVSHFRAVHRGASFAGLRTTTVRKLLPESWGFLCPVHTPDGEPCG
Sbjct: 446  RAGFTVQAERLNFLRFVSHFRAVHRGASFAGLRTTTVRKLLPESWGFLCPVHTPDGEPCG 505

Query: 74   LLNHLTSTCRITSHFNSQGKVRDFYKIRTSILSVLIAVGMIPSLPKLVQMGLPDFLNVLL 133
            LLNHLTSTCRITSHFNSQGKVRDFYKIRTSILSVLIAVGMIPSLPKLVQMGLPDFLNVLL
Sbjct: 506  LLNHLTSTCRITSHFNSQGKVRDFYKIRTSILSVLIAVGMIPSLPKLVQMGLPDFLNVLL 565

Query: 134  DGRIVGYISSNEVEKIVAHLRRLKVLSPHVIPDDLEVGYVPLSISGAYPGLYLFTSPSRF 193
            DGRIVGYISSNEVEKIVAHLRRLKVLSPHVIPDDLEVGYVPLSISGAYPGLYLFTSPSRF
Sbjct: 566  DGRIVGYISSNEVEKIVAHLRRLKVLSPHVIPDDLEVGYVPLSISGAYPGLYLFTSPSRF 625

Query: 194  VRPVKNLSISPEDNHNIELIGPFEQVFMEIRCPDGGDGGRKDEFPATHEEIHPTGMLSVV 253
            VRPVKNLSISPEDNHNIELIGPFEQVFMEIRCPDGGDGGRKDEFPATHEEIHPTGMLSVV
Sbjct: 626  VRPVKNLSISPEDNHNIELIGPFEQVFMEIRCPDGGDGGRKDEFPATHEEIHPTGMLSVV 685

Query: 254  ANLTPWSDHNQSPRNMYQCQMAKQTMAFSLQAIRYRADQKLYHLQTPQTPIVRTSTYTKY 313
            ANLTPWSDHNQSPRNMYQCQMAKQTMAFSLQAIRYRADQKLYHLQTPQTPIVRTSTYTKY
Sbjct: 686  ANLTPWSDHNQSPRNMYQCQMAKQTMAFSLQAIRYRADQKLYHLQTPQTPIVRTSTYTKY 745

Query: 314  NIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVERGMFHGQIYQTETIDLSDQGNRSSR 373
            NIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVERGMFHGQIYQTETIDLSDQGNRSSR
Sbjct: 746  NIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVERGMFHGQIYQTETIDLSDQGNRSSR 805

Query: 374  SQKMFRRSNIDTSVRSIIDADGLPYVGQMIQPDEPYCSIYDEVAGTTRTMKLKGSEAVIV 433
            SQKMFRRSNIDTSVRSIIDADGLPYVGQMIQPDEPYCSIYDEVAGTTRTMKLKGSEAVIV
Sbjct: 806  SQKMFRRSNIDTSVRSIIDADGLPYVGQMIQPDEPYCSIYDEVAGTTRTMKLKGSEAVIV 865

Query: 434  DYVSVDVKNKNNPQKVNIRFRRPRNPMIGDKFSSRHGQKGVCSQLWPDVDMPFCGATGMR 493
            DYVSVDVKNKNNPQKVNIRFRRPRNPMIGDKFSSRHGQKGVCSQLWPDVDMPFCGATGMR
Sbjct: 866  DYVSVDVKNKNNPQKVNIRFRRPRNPMIGDKFSSRHGQKGVCSQLWPDVDMPFCGATGMR 925

Query: 494  PDLIINPHAFPSRMTIAMLMESVAAKGGCLNGEFVNATPFRSSVNKTNAGDEETNGETLV 553
            PDLIINPHAFPSRMTIAMLMESVAAKGGCLNGEFVNATPFRSSVNKTNAGDEETNGETLV
Sbjct: 926  PDLIINPHAFPSRMTIAMLMESVAAKGGCLNGEFVNATPFRSSVNKTNAGDEETNGETLV 985

Query: 554  DELGSTLIKKGFNYHGLEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKYQVRSTGTVD 613
            DELGSTLIKKGFNYHGLEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKYQVRSTGTVD
Sbjct: 986  DELGSTLIKKGFNYHGLEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKYQVRSTGTVD 1045

Query: 614  QVTRQPIKGRKKGGGIRFGEMERDSMLAHGASYLLHDRLHTCSDHHIADVCSLCGSVLTS 673
            QVTRQPIKGRKKGGGIRFGEMERDSMLAHGASYLLHDRLHTCSDHHIADVCSLCGSVLTS
Sbjct: 1046 QVTRQPIKGRKKGGGIRFGEMERDSMLAHGASYLLHDRLHTCSDHHIADVCSLCGSVLTS 1105

Query: 674  SFVQPPKRAVREIGGLPPGKAPKRVTCHACKTSKGMETVAMPYVFKYLAAELAAMNIKMT 733
            SFVQPPKRAVREIGGLPPGKAPKRVTCHACKTSKGMETVAMPYVFKYLAAELAAMNIKMT
Sbjct: 1106 SFVQPPKRAVREIGGLPPGKAPKRVTCHACKTSKGMETVAMPYVFKYLAAELAAMNIKMT 1165

Query: 734  LQLSSGAA 741
            LQLSSGAA
Sbjct: 1166 LQLSSGAA 1173

[Close]

BLAST of Cucsat.G17440 vs. NCBI nr
Match: KAE8647280.1 (hypothetical protein Csa_002964 [Cucumis sativus])

HSP 1 Score: 1478 bits (3826), Expect = 0.0
Identity = 728/728 (100.00%), Postives = 728/728 (100.00%), Query Frame = 0


Query: 14   RAGFTVQAERLNFLRFVSHFRAVHRGASFAGLRTTTVRKLLPESWGFLCPVHTPDGEPCG 73
            RAGFTVQAERLNFLRFVSHFRAVHRGASFAGLRTTTVRKLLPESWGFLCPVHTPDGEPCG
Sbjct: 399  RAGFTVQAERLNFLRFVSHFRAVHRGASFAGLRTTTVRKLLPESWGFLCPVHTPDGEPCG 458

Query: 74   LLNHLTSTCRITSHFNSQGKVRDFYKIRTSILSVLIAVGMIPSLPKLVQMGLPDFLNVLL 133
            LLNHLTSTCRITSHFNSQGKVRDFYKIRTSILSVLIAVGMIPSLPKLVQMGLPDFLNVLL
Sbjct: 459  LLNHLTSTCRITSHFNSQGKVRDFYKIRTSILSVLIAVGMIPSLPKLVQMGLPDFLNVLL 518

Query: 134  DGRIVGYISSNEVEKIVAHLRRLKVLSPHVIPDDLEVGYVPLSISGAYPGLYLFTSPSRF 193
            DGRIVGYISSNEVEKIVAHLRRLKVLSPHVIPDDLEVGYVPLSISGAYPGLYLFTSPSRF
Sbjct: 519  DGRIVGYISSNEVEKIVAHLRRLKVLSPHVIPDDLEVGYVPLSISGAYPGLYLFTSPSRF 578

Query: 194  VRPVKNLSISPEDNHNIELIGPFEQVFMEIRCPDGGDGGRKDEFPATHEEIHPTGMLSVV 253
            VRPVKNLSISPEDNHNIELIGPFEQVFMEIRCPDGGDGGRKDEFPATHEEIHPTGMLSVV
Sbjct: 579  VRPVKNLSISPEDNHNIELIGPFEQVFMEIRCPDGGDGGRKDEFPATHEEIHPTGMLSVV 638

Query: 254  ANLTPWSDHNQSPRNMYQCQMAKQTMAFSLQAIRYRADQKLYHLQTPQTPIVRTSTYTKY 313
            ANLTPWSDHNQSPRNMYQCQMAKQTMAFSLQAIRYRADQKLYHLQTPQTPIVRTSTYTKY
Sbjct: 639  ANLTPWSDHNQSPRNMYQCQMAKQTMAFSLQAIRYRADQKLYHLQTPQTPIVRTSTYTKY 698

Query: 314  NIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVERGMFHGQIYQTETIDLSDQGNRSSR 373
            NIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVERGMFHGQIYQTETIDLSDQGNRSSR
Sbjct: 699  NIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVERGMFHGQIYQTETIDLSDQGNRSSR 758

Query: 374  SQKMFRRSNIDTSVRSIIDADGLPYVGQMIQPDEPYCSIYDEVAGTTRTMKLKGSEAVIV 433
            SQKMFRRSNIDTSVRSIIDADGLPYVGQMIQPDEPYCSIYDEVAGTTRTMKLKGSEAVIV
Sbjct: 759  SQKMFRRSNIDTSVRSIIDADGLPYVGQMIQPDEPYCSIYDEVAGTTRTMKLKGSEAVIV 818

Query: 434  DYVSVDVKNKNNPQKVNIRFRRPRNPMIGDKFSSRHGQKGVCSQLWPDVDMPFCGATGMR 493
            DYVSVDVKNKNNPQKVNIRFRRPRNPMIGDKFSSRHGQKGVCSQLWPDVDMPFCGATGMR
Sbjct: 819  DYVSVDVKNKNNPQKVNIRFRRPRNPMIGDKFSSRHGQKGVCSQLWPDVDMPFCGATGMR 878

Query: 494  PDLIINPHAFPSRMTIAMLMESVAAKGGCLNGEFVNATPFRSSVNKTNAGDEETNGETLV 553
            PDLIINPHAFPSRMTIAMLMESVAAKGGCLNGEFVNATPFRSSVNKTNAGDEETNGETLV
Sbjct: 879  PDLIINPHAFPSRMTIAMLMESVAAKGGCLNGEFVNATPFRSSVNKTNAGDEETNGETLV 938

Query: 554  DELGSTLIKKGFNYHGLEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKYQVRSTGTVD 613
            DELGSTLIKKGFNYHGLEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKYQVRSTGTVD
Sbjct: 939  DELGSTLIKKGFNYHGLEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKYQVRSTGTVD 998

Query: 614  QVTRQPIKGRKKGGGIRFGEMERDSMLAHGASYLLHDRLHTCSDHHIADVCSLCGSVLTS 673
            QVTRQPIKGRKKGGGIRFGEMERDSMLAHGASYLLHDRLHTCSDHHIADVCSLCGSVLTS
Sbjct: 999  QVTRQPIKGRKKGGGIRFGEMERDSMLAHGASYLLHDRLHTCSDHHIADVCSLCGSVLTS 1058

Query: 674  SFVQPPKRAVREIGGLPPGKAPKRVTCHACKTSKGMETVAMPYVFKYLAAELAAMNIKMT 733
            SFVQPPKRAVREIGGLPPGKAPKRVTCHACKTSKGMETVAMPYVFKYLAAELAAMNIKMT
Sbjct: 1059 SFVQPPKRAVREIGGLPPGKAPKRVTCHACKTSKGMETVAMPYVFKYLAAELAAMNIKMT 1118

Query: 734  LQLSSGAA 741
            LQLSSGAA
Sbjct: 1119 LQLSSGAA 1126

[Close]

BLAST of Cucsat.G17440 vs. NCBI nr
Match: XP_008445376.1 (PREDICTED: DNA-directed RNA polymerase I subunit 2 [Cucumis melo])

HSP 1 Score: 1457 bits (3773), Expect = 0.0
Identity = 715/727 (98.35%), Postives = 722/727 (99.31%), Query Frame = 0


Query: 14   RAGFTVQAERLNFLRFVSHFRAVHRGASFAGLRTTTVRKLLPESWGFLCPVHTPDGEPCG 73
            RAGFTVQAERLNFLRFVSHFRAVHRGASFAGLRTTTVRKLLPESWGFLCPVHTPDGEPCG
Sbjct: 446  RAGFTVQAERLNFLRFVSHFRAVHRGASFAGLRTTTVRKLLPESWGFLCPVHTPDGEPCG 505

Query: 74   LLNHLTSTCRITSHFNSQGKVRDFYKIRTSILSVLIAVGMIPSLPKLVQMGLPDFLNVLL 133
            LLNHLTSTCRITS+FNSQGKVRDFYKIRTSILSVLIAVGMIPSLPKLVQMG PD LNVLL
Sbjct: 506  LLNHLTSTCRITSYFNSQGKVRDFYKIRTSILSVLIAVGMIPSLPKLVQMGPPDVLNVLL 565

Query: 134  DGRIVGYISSNEVEKIVAHLRRLKVLSPHVIPDDLEVGYVPLSISGAYPGLYLFTSPSRF 193
            DGR+VGYISSNEVEK+VAHLRRLKVLSPHVIPDDLEVGYVPLSISGAYPGLYLFTSPSRF
Sbjct: 566  DGRLVGYISSNEVEKVVAHLRRLKVLSPHVIPDDLEVGYVPLSISGAYPGLYLFTSPSRF 625

Query: 194  VRPVKNLSISPEDNHNIELIGPFEQVFMEIRCPDGGDGGRKDEFPATHEEIHPTGMLSVV 253
            VRPVKNLSISPEDNHNIELIGPFEQVFMEIRCPDGGDGGRKDEFPATHEEIHPTGMLSVV
Sbjct: 626  VRPVKNLSISPEDNHNIELIGPFEQVFMEIRCPDGGDGGRKDEFPATHEEIHPTGMLSVV 685

Query: 254  ANLTPWSDHNQSPRNMYQCQMAKQTMAFSLQAIRYRADQKLYHLQTPQTPIVRTSTYTKY 313
            ANLTPWSDHNQSPRNMYQCQMAKQTMAFSLQAIRYRADQKLYHLQTPQTPIVRTSTYTKY
Sbjct: 686  ANLTPWSDHNQSPRNMYQCQMAKQTMAFSLQAIRYRADQKLYHLQTPQTPIVRTSTYTKY 745

Query: 314  NIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVERGMFHGQIYQTETIDLSDQGNRSSR 373
            NIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVERGMFHGQIYQTETIDLSDQGNRSSR
Sbjct: 746  NIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVERGMFHGQIYQTETIDLSDQGNRSSR 805

Query: 374  SQKMFRRSNIDTSVRSIIDADGLPYVGQMIQPDEPYCSIYDEVAGTTRTMKLKGSEAVIV 433
            SQKMFRRSNIDTSVRSIIDADGLPYVGQMIQPDEPYCSIYDEVAGTTRTMKLKGSEAVIV
Sbjct: 806  SQKMFRRSNIDTSVRSIIDADGLPYVGQMIQPDEPYCSIYDEVAGTTRTMKLKGSEAVIV 865

Query: 434  DYVSVDVKNKNNPQKVNIRFRRPRNPMIGDKFSSRHGQKGVCSQLWPDVDMPFCGATGMR 493
            DYVSVDVKNKNNPQKVNIRFRRPRNPMIGDKFSSRHGQKGVCSQLWPD+DMPFCGATGMR
Sbjct: 866  DYVSVDVKNKNNPQKVNIRFRRPRNPMIGDKFSSRHGQKGVCSQLWPDIDMPFCGATGMR 925

Query: 494  PDLIINPHAFPSRMTIAMLMESVAAKGGCLNGEFVNATPFRSSVNKTNAGDEETNGETLV 553
            PDLIINPHAFPSRMTIAMLMESVAAKGGCLNGEFVNATPFRSSV KTNAGD ETN ETLV
Sbjct: 926  PDLIINPHAFPSRMTIAMLMESVAAKGGCLNGEFVNATPFRSSVKKTNAGDGETNAETLV 985

Query: 554  DELGSTLIKKGFNYHGLEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKYQVRSTGTVD 613
            DELGSTLIKKGFNYHGLEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKYQVRSTGTVD
Sbjct: 986  DELGSTLIKKGFNYHGLEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKYQVRSTGTVD 1045

Query: 614  QVTRQPIKGRKKGGGIRFGEMERDSMLAHGASYLLHDRLHTCSDHHIADVCSLCGSVLTS 673
            QVTRQPIKGRKKGGGIRFGEMERDSMLAHGASYLLHDRLHTCSDHHIADVCSLCGS+LTS
Sbjct: 1046 QVTRQPIKGRKKGGGIRFGEMERDSMLAHGASYLLHDRLHTCSDHHIADVCSLCGSILTS 1105

Query: 674  SFVQPPKRAVREIGGLPPGKAPKRVTCHACKTSKGMETVAMPYVFKYLAAELAAMNIKMT 733
            SFVQPPKRAVREIGGLPPGKAPKRVTCHACKTSKGMETVAMPYVFKYLAAELAAMNIKMT
Sbjct: 1106 SFVQPPKRAVREIGGLPPGKAPKRVTCHACKTSKGMETVAMPYVFKYLAAELAAMNIKMT 1165

Query: 734  LQLSSGA 740
            L+LS+GA
Sbjct: 1166 LELSNGA 1172

[Close]

BLAST of Cucsat.G17440 vs. NCBI nr
Match: KAA0064800.1 (DNA-directed RNA polymerase I subunit 2 [Cucumis melo var. makuwa])

HSP 1 Score: 1457 bits (3773), Expect = 0.0
Identity = 715/727 (98.35%), Postives = 722/727 (99.31%), Query Frame = 0


Query: 14  RAGFTVQAERLNFLRFVSHFRAVHRGASFAGLRTTTVRKLLPESWGFLCPVHTPDGEPCG 73
           RAGFTVQAERLNFLRFVSHFRAVHRGASFAGLRTTTVRKLLPESWGFLCPVHTPDGEPCG
Sbjct: 73  RAGFTVQAERLNFLRFVSHFRAVHRGASFAGLRTTTVRKLLPESWGFLCPVHTPDGEPCG 132

Query: 74  LLNHLTSTCRITSHFNSQGKVRDFYKIRTSILSVLIAVGMIPSLPKLVQMGLPDFLNVLL 133
           LLNHLTSTCRITS+FNSQGKVRDFYKIRTSILSVLIAVGMIPSLPKLVQMG PD LNVLL
Sbjct: 133 LLNHLTSTCRITSYFNSQGKVRDFYKIRTSILSVLIAVGMIPSLPKLVQMGPPDVLNVLL 192

Query: 134 DGRIVGYISSNEVEKIVAHLRRLKVLSPHVIPDDLEVGYVPLSISGAYPGLYLFTSPSRF 193
           DGR+VGYISSNEVEK+VAHLRRLKVLSPHVIPDDLEVGYVPLSISGAYPGLYLFTSPSRF
Sbjct: 193 DGRLVGYISSNEVEKVVAHLRRLKVLSPHVIPDDLEVGYVPLSISGAYPGLYLFTSPSRF 252

Query: 194 VRPVKNLSISPEDNHNIELIGPFEQVFMEIRCPDGGDGGRKDEFPATHEEIHPTGMLSVV 253
           VRPVKNLSISPEDNHNIELIGPFEQVFMEIRCPDGGDGGRKDEFPATHEEIHPTGMLSVV
Sbjct: 253 VRPVKNLSISPEDNHNIELIGPFEQVFMEIRCPDGGDGGRKDEFPATHEEIHPTGMLSVV 312

Query: 254 ANLTPWSDHNQSPRNMYQCQMAKQTMAFSLQAIRYRADQKLYHLQTPQTPIVRTSTYTKY 313
           ANLTPWSDHNQSPRNMYQCQMAKQTMAFSLQAIRYRADQKLYHLQTPQTPIVRTSTYTKY
Sbjct: 313 ANLTPWSDHNQSPRNMYQCQMAKQTMAFSLQAIRYRADQKLYHLQTPQTPIVRTSTYTKY 372

Query: 314 NIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVERGMFHGQIYQTETIDLSDQGNRSSR 373
           NIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVERGMFHGQIYQTETIDLSDQGNRSSR
Sbjct: 373 NIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVERGMFHGQIYQTETIDLSDQGNRSSR 432

Query: 374 SQKMFRRSNIDTSVRSIIDADGLPYVGQMIQPDEPYCSIYDEVAGTTRTMKLKGSEAVIV 433
           SQKMFRRSNIDTSVRSIIDADGLPYVGQMIQPDEPYCSIYDEVAGTTRTMKLKGSEAVIV
Sbjct: 433 SQKMFRRSNIDTSVRSIIDADGLPYVGQMIQPDEPYCSIYDEVAGTTRTMKLKGSEAVIV 492

Query: 434 DYVSVDVKNKNNPQKVNIRFRRPRNPMIGDKFSSRHGQKGVCSQLWPDVDMPFCGATGMR 493
           DYVSVDVKNKNNPQKVNIRFRRPRNPMIGDKFSSRHGQKGVCSQLWPD+DMPFCGATGMR
Sbjct: 493 DYVSVDVKNKNNPQKVNIRFRRPRNPMIGDKFSSRHGQKGVCSQLWPDIDMPFCGATGMR 552

Query: 494 PDLIINPHAFPSRMTIAMLMESVAAKGGCLNGEFVNATPFRSSVNKTNAGDEETNGETLV 553
           PDLIINPHAFPSRMTIAMLMESVAAKGGCLNGEFVNATPFRSSV KTNAGD ETN ETLV
Sbjct: 553 PDLIINPHAFPSRMTIAMLMESVAAKGGCLNGEFVNATPFRSSVKKTNAGDGETNAETLV 612

Query: 554 DELGSTLIKKGFNYHGLEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKYQVRSTGTVD 613
           DELGSTLIKKGFNYHGLEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKYQVRSTGTVD
Sbjct: 613 DELGSTLIKKGFNYHGLEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKYQVRSTGTVD 672

Query: 614 QVTRQPIKGRKKGGGIRFGEMERDSMLAHGASYLLHDRLHTCSDHHIADVCSLCGSVLTS 673
           QVTRQPIKGRKKGGGIRFGEMERDSMLAHGASYLLHDRLHTCSDHHIADVCSLCGS+LTS
Sbjct: 673 QVTRQPIKGRKKGGGIRFGEMERDSMLAHGASYLLHDRLHTCSDHHIADVCSLCGSILTS 732

Query: 674 SFVQPPKRAVREIGGLPPGKAPKRVTCHACKTSKGMETVAMPYVFKYLAAELAAMNIKMT 733
           SFVQPPKRAVREIGGLPPGKAPKRVTCHACKTSKGMETVAMPYVFKYLAAELAAMNIKMT
Sbjct: 733 SFVQPPKRAVREIGGLPPGKAPKRVTCHACKTSKGMETVAMPYVFKYLAAELAAMNIKMT 792

Query: 734 LQLSSGA 740
           L+LS+GA
Sbjct: 793 LELSNGA 799

[Close]

BLAST of Cucsat.G17440 vs. NCBI nr
Match: XP_038886021.1 (DNA-directed RNA polymerase I subunit 2 isoform X1 [Benincasa hispida])

HSP 1 Score: 1422 bits (3680), Expect = 0.0
Identity = 700/728 (96.15%), Postives = 713/728 (97.94%), Query Frame = 0


Query: 14   RAGFTVQAERLNFLRFVSHFRAVHRGASFAGLRTTTVRKLLPESWGFLCPVHTPDGEPCG 73
            RAGFTVQAERLNFLRFVSHFRAVHRGASFAGLRTTTVRKLLPESWGFLCPVHTPDGEPCG
Sbjct: 446  RAGFTVQAERLNFLRFVSHFRAVHRGASFAGLRTTTVRKLLPESWGFLCPVHTPDGEPCG 505

Query: 74   LLNHLTSTCRITSHFNSQGKVRDFYKIRTSILSVLIAVGMIPSLPKLVQMGLPDFLNVLL 133
            LLNHLTSTCRITS+FNSQGKVRDF+KIRTSILSVLIAVGMIPSLPKLVQMG PD LNVLL
Sbjct: 506  LLNHLTSTCRITSYFNSQGKVRDFFKIRTSILSVLIAVGMIPSLPKLVQMGPPDVLNVLL 565

Query: 134  DGRIVGYISSNEVEKIVAHLRRLKVLSPHVIPDDLEVGYVPLSISGAYPGLYLFTSPSRF 193
            DGRIVGYISS+EVEKIVAHLRRLKVLS HVIP+DLEVGYVPLSISGAYPGLYLFTSPSRF
Sbjct: 566  DGRIVGYISSSEVEKIVAHLRRLKVLSSHVIPEDLEVGYVPLSISGAYPGLYLFTSPSRF 625

Query: 194  VRPVKNLSISPEDNHNIELIGPFEQVFMEIRCPDGGDGGRKDEFPATHEEIHPTGMLSVV 253
            +RPVKNLSIS EDN NIELIGPFEQVFMEIRCPDGGDGGRKDEFPATHEEIHPTGMLSVV
Sbjct: 626  IRPVKNLSISSEDNQNIELIGPFEQVFMEIRCPDGGDGGRKDEFPATHEEIHPTGMLSVV 685

Query: 254  ANLTPWSDHNQSPRNMYQCQMAKQTMAFSLQAIRYRADQKLYHLQTPQTPIVRTSTYTKY 313
            ANLTPWSDHNQSPRNMYQCQMAKQTMAFSLQAIRYRADQKLYHLQTPQTPIVRTSTY KY
Sbjct: 686  ANLTPWSDHNQSPRNMYQCQMAKQTMAFSLQAIRYRADQKLYHLQTPQTPIVRTSTYMKY 745

Query: 314  NIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVERGMFHGQIYQTETIDLSDQGNRSSR 373
            NIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVERGM+HGQIYQTETIDLSDQGNRSSR
Sbjct: 746  NIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVERGMYHGQIYQTETIDLSDQGNRSSR 805

Query: 374  SQKMFRRSNIDTSVRSIIDADGLPYVGQMIQPDEPYCSIYDEVAGTTRTMKLKGSEAVIV 433
            SQK+FRRSNIDTSVRSIID+DGLPYVGQMI PDEPYCSIYDEVAGTTRTMKLKGSEAVIV
Sbjct: 806  SQKIFRRSNIDTSVRSIIDSDGLPYVGQMIHPDEPYCSIYDEVAGTTRTMKLKGSEAVIV 865

Query: 434  DYVSVDVKNKNNPQKVNIRFRRPRNPMIGDKFSSRHGQKGVCSQLWPDVDMPFCGATGMR 493
            DYVSVDVKNK +PQKVNIRFR PRNP+IGDKFSSRHGQKGVCSQLWPDVDMPFCGATGMR
Sbjct: 866  DYVSVDVKNKKHPQKVNIRFRHPRNPVIGDKFSSRHGQKGVCSQLWPDVDMPFCGATGMR 925

Query: 494  PDLIINPHAFPSRMTIAMLMESVAAKGGCLNGEFVNATPFRSSVNKTNAGDEETNGETLV 553
            PDLIINPHAFPSRMTIAMLMESVAAKGGCLNGEFVNATPFRSSV KTN GDEE+N ETLV
Sbjct: 926  PDLIINPHAFPSRMTIAMLMESVAAKGGCLNGEFVNATPFRSSVKKTNVGDEESNAETLV 985

Query: 554  DELGSTLIKKGFNYHGLEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKYQVRSTGTVD 613
            DELGSTLIK+GFNYHGLEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKYQVRSTGTVD
Sbjct: 986  DELGSTLIKRGFNYHGLEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKYQVRSTGTVD 1045

Query: 614  QVTRQPIKGRKKGGGIRFGEMERDSMLAHGASYLLHDRLHTCSDHHIADVCSLCGSVLTS 673
            QVTRQPIKGRKKGGGIRFGEMERDSMLAHGASYLLHDRLHTCSDHHIADVCSLCGS+LTS
Sbjct: 1046 QVTRQPIKGRKKGGGIRFGEMERDSMLAHGASYLLHDRLHTCSDHHIADVCSLCGSILTS 1105

Query: 674  SFVQPPKRAVREIGGLPPGKAPKRVTCHACKTSKGMETVAMPYVFKYLAAELAAMNIKMT 733
            S VQP KRAVREIGGLPPGKA KRVTCHACKTSKGMETVAMPYVFKYLAAELAAMNIKMT
Sbjct: 1106 SIVQPQKRAVREIGGLPPGKAHKRVTCHACKTSKGMETVAMPYVFKYLAAELAAMNIKMT 1165

Query: 734  LQLSSGAA 741
            LQLSSGAA
Sbjct: 1166 LQLSSGAA 1173

[Close]

BLAST of Cucsat.G17440 vs. ExPASy TrEMBL
Match: A0A0A0KIZ8 (DNA-directed RNA polymerase subunit beta OS=Cucumis sativus OX=3659 GN=Csa_6G400300 PE=3 SV=1)

HSP 1 Score: 1478 bits (3826), Expect = 0.0
Identity = 728/728 (100.00%), Postives = 728/728 (100.00%), Query Frame = 0


Query: 14   RAGFTVQAERLNFLRFVSHFRAVHRGASFAGLRTTTVRKLLPESWGFLCPVHTPDGEPCG 73
            RAGFTVQAERLNFLRFVSHFRAVHRGASFAGLRTTTVRKLLPESWGFLCPVHTPDGEPCG
Sbjct: 526  RAGFTVQAERLNFLRFVSHFRAVHRGASFAGLRTTTVRKLLPESWGFLCPVHTPDGEPCG 585

Query: 74   LLNHLTSTCRITSHFNSQGKVRDFYKIRTSILSVLIAVGMIPSLPKLVQMGLPDFLNVLL 133
            LLNHLTSTCRITSHFNSQGKVRDFYKIRTSILSVLIAVGMIPSLPKLVQMGLPDFLNVLL
Sbjct: 586  LLNHLTSTCRITSHFNSQGKVRDFYKIRTSILSVLIAVGMIPSLPKLVQMGLPDFLNVLL 645

Query: 134  DGRIVGYISSNEVEKIVAHLRRLKVLSPHVIPDDLEVGYVPLSISGAYPGLYLFTSPSRF 193
            DGRIVGYISSNEVEKIVAHLRRLKVLSPHVIPDDLEVGYVPLSISGAYPGLYLFTSPSRF
Sbjct: 646  DGRIVGYISSNEVEKIVAHLRRLKVLSPHVIPDDLEVGYVPLSISGAYPGLYLFTSPSRF 705

Query: 194  VRPVKNLSISPEDNHNIELIGPFEQVFMEIRCPDGGDGGRKDEFPATHEEIHPTGMLSVV 253
            VRPVKNLSISPEDNHNIELIGPFEQVFMEIRCPDGGDGGRKDEFPATHEEIHPTGMLSVV
Sbjct: 706  VRPVKNLSISPEDNHNIELIGPFEQVFMEIRCPDGGDGGRKDEFPATHEEIHPTGMLSVV 765

Query: 254  ANLTPWSDHNQSPRNMYQCQMAKQTMAFSLQAIRYRADQKLYHLQTPQTPIVRTSTYTKY 313
            ANLTPWSDHNQSPRNMYQCQMAKQTMAFSLQAIRYRADQKLYHLQTPQTPIVRTSTYTKY
Sbjct: 766  ANLTPWSDHNQSPRNMYQCQMAKQTMAFSLQAIRYRADQKLYHLQTPQTPIVRTSTYTKY 825

Query: 314  NIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVERGMFHGQIYQTETIDLSDQGNRSSR 373
            NIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVERGMFHGQIYQTETIDLSDQGNRSSR
Sbjct: 826  NIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVERGMFHGQIYQTETIDLSDQGNRSSR 885

Query: 374  SQKMFRRSNIDTSVRSIIDADGLPYVGQMIQPDEPYCSIYDEVAGTTRTMKLKGSEAVIV 433
            SQKMFRRSNIDTSVRSIIDADGLPYVGQMIQPDEPYCSIYDEVAGTTRTMKLKGSEAVIV
Sbjct: 886  SQKMFRRSNIDTSVRSIIDADGLPYVGQMIQPDEPYCSIYDEVAGTTRTMKLKGSEAVIV 945

Query: 434  DYVSVDVKNKNNPQKVNIRFRRPRNPMIGDKFSSRHGQKGVCSQLWPDVDMPFCGATGMR 493
            DYVSVDVKNKNNPQKVNIRFRRPRNPMIGDKFSSRHGQKGVCSQLWPDVDMPFCGATGMR
Sbjct: 946  DYVSVDVKNKNNPQKVNIRFRRPRNPMIGDKFSSRHGQKGVCSQLWPDVDMPFCGATGMR 1005

Query: 494  PDLIINPHAFPSRMTIAMLMESVAAKGGCLNGEFVNATPFRSSVNKTNAGDEETNGETLV 553
            PDLIINPHAFPSRMTIAMLMESVAAKGGCLNGEFVNATPFRSSVNKTNAGDEETNGETLV
Sbjct: 1006 PDLIINPHAFPSRMTIAMLMESVAAKGGCLNGEFVNATPFRSSVNKTNAGDEETNGETLV 1065

Query: 554  DELGSTLIKKGFNYHGLEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKYQVRSTGTVD 613
            DELGSTLIKKGFNYHGLEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKYQVRSTGTVD
Sbjct: 1066 DELGSTLIKKGFNYHGLEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKYQVRSTGTVD 1125

Query: 614  QVTRQPIKGRKKGGGIRFGEMERDSMLAHGASYLLHDRLHTCSDHHIADVCSLCGSVLTS 673
            QVTRQPIKGRKKGGGIRFGEMERDSMLAHGASYLLHDRLHTCSDHHIADVCSLCGSVLTS
Sbjct: 1126 QVTRQPIKGRKKGGGIRFGEMERDSMLAHGASYLLHDRLHTCSDHHIADVCSLCGSVLTS 1185

Query: 674  SFVQPPKRAVREIGGLPPGKAPKRVTCHACKTSKGMETVAMPYVFKYLAAELAAMNIKMT 733
            SFVQPPKRAVREIGGLPPGKAPKRVTCHACKTSKGMETVAMPYVFKYLAAELAAMNIKMT
Sbjct: 1186 SFVQPPKRAVREIGGLPPGKAPKRVTCHACKTSKGMETVAMPYVFKYLAAELAAMNIKMT 1245

Query: 734  LQLSSGAA 741
            LQLSSGAA
Sbjct: 1246 LQLSSGAA 1253

[Close]

BLAST of Cucsat.G17440 vs. ExPASy TrEMBL
Match: A0A5A7VC96 (DNA-directed RNA polymerase subunit beta OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G001080 PE=3 SV=1)

HSP 1 Score: 1457 bits (3773), Expect = 0.0
Identity = 715/727 (98.35%), Postives = 722/727 (99.31%), Query Frame = 0


Query: 14  RAGFTVQAERLNFLRFVSHFRAVHRGASFAGLRTTTVRKLLPESWGFLCPVHTPDGEPCG 73
           RAGFTVQAERLNFLRFVSHFRAVHRGASFAGLRTTTVRKLLPESWGFLCPVHTPDGEPCG
Sbjct: 73  RAGFTVQAERLNFLRFVSHFRAVHRGASFAGLRTTTVRKLLPESWGFLCPVHTPDGEPCG 132

Query: 74  LLNHLTSTCRITSHFNSQGKVRDFYKIRTSILSVLIAVGMIPSLPKLVQMGLPDFLNVLL 133
           LLNHLTSTCRITS+FNSQGKVRDFYKIRTSILSVLIAVGMIPSLPKLVQMG PD LNVLL
Sbjct: 133 LLNHLTSTCRITSYFNSQGKVRDFYKIRTSILSVLIAVGMIPSLPKLVQMGPPDVLNVLL 192

Query: 134 DGRIVGYISSNEVEKIVAHLRRLKVLSPHVIPDDLEVGYVPLSISGAYPGLYLFTSPSRF 193
           DGR+VGYISSNEVEK+VAHLRRLKVLSPHVIPDDLEVGYVPLSISGAYPGLYLFTSPSRF
Sbjct: 193 DGRLVGYISSNEVEKVVAHLRRLKVLSPHVIPDDLEVGYVPLSISGAYPGLYLFTSPSRF 252

Query: 194 VRPVKNLSISPEDNHNIELIGPFEQVFMEIRCPDGGDGGRKDEFPATHEEIHPTGMLSVV 253
           VRPVKNLSISPEDNHNIELIGPFEQVFMEIRCPDGGDGGRKDEFPATHEEIHPTGMLSVV
Sbjct: 253 VRPVKNLSISPEDNHNIELIGPFEQVFMEIRCPDGGDGGRKDEFPATHEEIHPTGMLSVV 312

Query: 254 ANLTPWSDHNQSPRNMYQCQMAKQTMAFSLQAIRYRADQKLYHLQTPQTPIVRTSTYTKY 313
           ANLTPWSDHNQSPRNMYQCQMAKQTMAFSLQAIRYRADQKLYHLQTPQTPIVRTSTYTKY
Sbjct: 313 ANLTPWSDHNQSPRNMYQCQMAKQTMAFSLQAIRYRADQKLYHLQTPQTPIVRTSTYTKY 372

Query: 314 NIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVERGMFHGQIYQTETIDLSDQGNRSSR 373
           NIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVERGMFHGQIYQTETIDLSDQGNRSSR
Sbjct: 373 NIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVERGMFHGQIYQTETIDLSDQGNRSSR 432

Query: 374 SQKMFRRSNIDTSVRSIIDADGLPYVGQMIQPDEPYCSIYDEVAGTTRTMKLKGSEAVIV 433
           SQKMFRRSNIDTSVRSIIDADGLPYVGQMIQPDEPYCSIYDEVAGTTRTMKLKGSEAVIV
Sbjct: 433 SQKMFRRSNIDTSVRSIIDADGLPYVGQMIQPDEPYCSIYDEVAGTTRTMKLKGSEAVIV 492

Query: 434 DYVSVDVKNKNNPQKVNIRFRRPRNPMIGDKFSSRHGQKGVCSQLWPDVDMPFCGATGMR 493
           DYVSVDVKNKNNPQKVNIRFRRPRNPMIGDKFSSRHGQKGVCSQLWPD+DMPFCGATGMR
Sbjct: 493 DYVSVDVKNKNNPQKVNIRFRRPRNPMIGDKFSSRHGQKGVCSQLWPDIDMPFCGATGMR 552

Query: 494 PDLIINPHAFPSRMTIAMLMESVAAKGGCLNGEFVNATPFRSSVNKTNAGDEETNGETLV 553
           PDLIINPHAFPSRMTIAMLMESVAAKGGCLNGEFVNATPFRSSV KTNAGD ETN ETLV
Sbjct: 553 PDLIINPHAFPSRMTIAMLMESVAAKGGCLNGEFVNATPFRSSVKKTNAGDGETNAETLV 612

Query: 554 DELGSTLIKKGFNYHGLEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKYQVRSTGTVD 613
           DELGSTLIKKGFNYHGLEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKYQVRSTGTVD
Sbjct: 613 DELGSTLIKKGFNYHGLEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKYQVRSTGTVD 672

Query: 614 QVTRQPIKGRKKGGGIRFGEMERDSMLAHGASYLLHDRLHTCSDHHIADVCSLCGSVLTS 673
           QVTRQPIKGRKKGGGIRFGEMERDSMLAHGASYLLHDRLHTCSDHHIADVCSLCGS+LTS
Sbjct: 673 QVTRQPIKGRKKGGGIRFGEMERDSMLAHGASYLLHDRLHTCSDHHIADVCSLCGSILTS 732

Query: 674 SFVQPPKRAVREIGGLPPGKAPKRVTCHACKTSKGMETVAMPYVFKYLAAELAAMNIKMT 733
           SFVQPPKRAVREIGGLPPGKAPKRVTCHACKTSKGMETVAMPYVFKYLAAELAAMNIKMT
Sbjct: 733 SFVQPPKRAVREIGGLPPGKAPKRVTCHACKTSKGMETVAMPYVFKYLAAELAAMNIKMT 792

Query: 734 LQLSSGA 740
           L+LS+GA
Sbjct: 793 LELSNGA 799

[Close]

BLAST of Cucsat.G17440 vs. ExPASy TrEMBL
Match: A0A1S3BCJ8 (DNA-directed RNA polymerase subunit beta OS=Cucumis melo OX=3656 GN=LOC103488429 PE=3 SV=1)

HSP 1 Score: 1457 bits (3773), Expect = 0.0
Identity = 715/727 (98.35%), Postives = 722/727 (99.31%), Query Frame = 0


Query: 14   RAGFTVQAERLNFLRFVSHFRAVHRGASFAGLRTTTVRKLLPESWGFLCPVHTPDGEPCG 73
            RAGFTVQAERLNFLRFVSHFRAVHRGASFAGLRTTTVRKLLPESWGFLCPVHTPDGEPCG
Sbjct: 446  RAGFTVQAERLNFLRFVSHFRAVHRGASFAGLRTTTVRKLLPESWGFLCPVHTPDGEPCG 505

Query: 74   LLNHLTSTCRITSHFNSQGKVRDFYKIRTSILSVLIAVGMIPSLPKLVQMGLPDFLNVLL 133
            LLNHLTSTCRITS+FNSQGKVRDFYKIRTSILSVLIAVGMIPSLPKLVQMG PD LNVLL
Sbjct: 506  LLNHLTSTCRITSYFNSQGKVRDFYKIRTSILSVLIAVGMIPSLPKLVQMGPPDVLNVLL 565

Query: 134  DGRIVGYISSNEVEKIVAHLRRLKVLSPHVIPDDLEVGYVPLSISGAYPGLYLFTSPSRF 193
            DGR+VGYISSNEVEK+VAHLRRLKVLSPHVIPDDLEVGYVPLSISGAYPGLYLFTSPSRF
Sbjct: 566  DGRLVGYISSNEVEKVVAHLRRLKVLSPHVIPDDLEVGYVPLSISGAYPGLYLFTSPSRF 625

Query: 194  VRPVKNLSISPEDNHNIELIGPFEQVFMEIRCPDGGDGGRKDEFPATHEEIHPTGMLSVV 253
            VRPVKNLSISPEDNHNIELIGPFEQVFMEIRCPDGGDGGRKDEFPATHEEIHPTGMLSVV
Sbjct: 626  VRPVKNLSISPEDNHNIELIGPFEQVFMEIRCPDGGDGGRKDEFPATHEEIHPTGMLSVV 685

Query: 254  ANLTPWSDHNQSPRNMYQCQMAKQTMAFSLQAIRYRADQKLYHLQTPQTPIVRTSTYTKY 313
            ANLTPWSDHNQSPRNMYQCQMAKQTMAFSLQAIRYRADQKLYHLQTPQTPIVRTSTYTKY
Sbjct: 686  ANLTPWSDHNQSPRNMYQCQMAKQTMAFSLQAIRYRADQKLYHLQTPQTPIVRTSTYTKY 745

Query: 314  NIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVERGMFHGQIYQTETIDLSDQGNRSSR 373
            NIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVERGMFHGQIYQTETIDLSDQGNRSSR
Sbjct: 746  NIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVERGMFHGQIYQTETIDLSDQGNRSSR 805

Query: 374  SQKMFRRSNIDTSVRSIIDADGLPYVGQMIQPDEPYCSIYDEVAGTTRTMKLKGSEAVIV 433
            SQKMFRRSNIDTSVRSIIDADGLPYVGQMIQPDEPYCSIYDEVAGTTRTMKLKGSEAVIV
Sbjct: 806  SQKMFRRSNIDTSVRSIIDADGLPYVGQMIQPDEPYCSIYDEVAGTTRTMKLKGSEAVIV 865

Query: 434  DYVSVDVKNKNNPQKVNIRFRRPRNPMIGDKFSSRHGQKGVCSQLWPDVDMPFCGATGMR 493
            DYVSVDVKNKNNPQKVNIRFRRPRNPMIGDKFSSRHGQKGVCSQLWPD+DMPFCGATGMR
Sbjct: 866  DYVSVDVKNKNNPQKVNIRFRRPRNPMIGDKFSSRHGQKGVCSQLWPDIDMPFCGATGMR 925

Query: 494  PDLIINPHAFPSRMTIAMLMESVAAKGGCLNGEFVNATPFRSSVNKTNAGDEETNGETLV 553
            PDLIINPHAFPSRMTIAMLMESVAAKGGCLNGEFVNATPFRSSV KTNAGD ETN ETLV
Sbjct: 926  PDLIINPHAFPSRMTIAMLMESVAAKGGCLNGEFVNATPFRSSVKKTNAGDGETNAETLV 985

Query: 554  DELGSTLIKKGFNYHGLEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKYQVRSTGTVD 613
            DELGSTLIKKGFNYHGLEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKYQVRSTGTVD
Sbjct: 986  DELGSTLIKKGFNYHGLEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKYQVRSTGTVD 1045

Query: 614  QVTRQPIKGRKKGGGIRFGEMERDSMLAHGASYLLHDRLHTCSDHHIADVCSLCGSVLTS 673
            QVTRQPIKGRKKGGGIRFGEMERDSMLAHGASYLLHDRLHTCSDHHIADVCSLCGS+LTS
Sbjct: 1046 QVTRQPIKGRKKGGGIRFGEMERDSMLAHGASYLLHDRLHTCSDHHIADVCSLCGSILTS 1105

Query: 674  SFVQPPKRAVREIGGLPPGKAPKRVTCHACKTSKGMETVAMPYVFKYLAAELAAMNIKMT 733
            SFVQPPKRAVREIGGLPPGKAPKRVTCHACKTSKGMETVAMPYVFKYLAAELAAMNIKMT
Sbjct: 1106 SFVQPPKRAVREIGGLPPGKAPKRVTCHACKTSKGMETVAMPYVFKYLAAELAAMNIKMT 1165

Query: 734  LQLSSGA 740
            L+LS+GA
Sbjct: 1166 LELSNGA 1172

[Close]

BLAST of Cucsat.G17440 vs. ExPASy TrEMBL
Match: A0A6J1KKK5 (DNA-directed RNA polymerase subunit beta OS=Cucurbita maxima OX=3661 GN=LOC111496114 PE=3 SV=1)

HSP 1 Score: 1377 bits (3563), Expect = 0.0
Identity = 671/727 (92.30%), Postives = 701/727 (96.42%), Query Frame = 0


Query: 14   RAGFTVQAERLNFLRFVSHFRAVHRGASFAGLRTTTVRKLLPESWGFLCPVHTPDGEPCG 73
            RAGFTVQAERLNFLRF+SHFRAVHRGASFAGLRTTTVRKLLPESWGFLCPVHTPDGEPCG
Sbjct: 446  RAGFTVQAERLNFLRFISHFRAVHRGASFAGLRTTTVRKLLPESWGFLCPVHTPDGEPCG 505

Query: 74   LLNHLTSTCRITSHFNSQGKVRDFYKIRTSILSVLIAVGMIPSLPKLVQMGLPDFLNVLL 133
            LLNHLTSTCRITS+FNSQGKVRDF+KIR SILSVLIAVGMIPSLPKLVQMG PD LNV+L
Sbjct: 506  LLNHLTSTCRITSYFNSQGKVRDFFKIRASILSVLIAVGMIPSLPKLVQMGPPDVLNVIL 565

Query: 134  DGRIVGYISSNEVEKIVAHLRRLKVLSPHVIPDDLEVGYVPLSISGAYPGLYLFTSPSRF 193
            DGRIVGYISS EVEK+VAHLR+LKVLSPHVIP+DLEVGYVPLSI GAYPGL+LFTSPSRF
Sbjct: 566  DGRIVGYISSGEVEKVVAHLRQLKVLSPHVIPEDLEVGYVPLSICGAYPGLFLFTSPSRF 625

Query: 194  VRPVKNLSISPEDNHNIELIGPFEQVFMEIRCPDGGDGGRKDEFPATHEEIHPTGMLSVV 253
            VRPV+NLSIS E+N NIELIGPFEQVFMEIRCPDGGDGGRKDEFPATHEEIHPTGMLSVV
Sbjct: 626  VRPVRNLSISSEENQNIELIGPFEQVFMEIRCPDGGDGGRKDEFPATHEEIHPTGMLSVV 685

Query: 254  ANLTPWSDHNQSPRNMYQCQMAKQTMAFSLQAIRYRADQKLYHLQTPQTPIVRTSTYTKY 313
             NLTPWSDHNQSPRNMYQCQMAKQTMAFSLQAI++RADQKLYHLQTPQTPIVRTSTY KY
Sbjct: 686  GNLTPWSDHNQSPRNMYQCQMAKQTMAFSLQAIQFRADQKLYHLQTPQTPIVRTSTYMKY 745

Query: 314  NIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVERGMFHGQIYQTETIDLSDQGNRSSR 373
            NIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVERGM+HGQIYQTETIDLS+Q +RSSR
Sbjct: 746  NIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVERGMYHGQIYQTETIDLSEQSSRSSR 805

Query: 374  SQKMFRRSNIDTSVRSIIDADGLPYVGQMIQPDEPYCSIYDEVAGTTRTMKLKGSEAVIV 433
            SQK+FRRSNID SVRS ID+DGLPYVGQMI+PDEPYCSIYDEVAGTTR MKLKGSE V V
Sbjct: 806  SQKLFRRSNIDKSVRSHIDSDGLPYVGQMIKPDEPYCSIYDEVAGTTRNMKLKGSEPVFV 865

Query: 434  DYVSVDVKNKNNPQKVNIRFRRPRNPMIGDKFSSRHGQKGVCSQLWPDVDMPFCGATGMR 493
            DYVSVDVKNK +PQKVNIRFR PRNP+IGDKFSSRHGQKGVCSQLWPDVDMPF GATGMR
Sbjct: 866  DYVSVDVKNKKHPQKVNIRFRHPRNPVIGDKFSSRHGQKGVCSQLWPDVDMPFSGATGMR 925

Query: 494  PDLIINPHAFPSRMTIAMLMESVAAKGGCLNGEFVNATPFRSSVNKTNAGDEETNGETLV 553
            PDLIINPHAFPSRMTIAMLMESVAAKGGCLNGEF+NATPF+SSV K NAGDEE+  E+LV
Sbjct: 926  PDLIINPHAFPSRMTIAMLMESVAAKGGCLNGEFINATPFKSSVKKRNAGDEESKTESLV 985

Query: 554  DELGSTLIKKGFNYHGLEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKYQVRSTGTVD 613
            DELGSTL+KKGFNYHG+EVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKYQVRSTGTVD
Sbjct: 986  DELGSTLVKKGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKYQVRSTGTVD 1045

Query: 614  QVTRQPIKGRKKGGGIRFGEMERDSMLAHGASYLLHDRLHTCSDHHIADVCSLCGSVLTS 673
            QVTRQPIKGRKKGGGIRFGEMERDSMLAHGASYLLHDRLHTCSDHHIADVCSLCGS+LTS
Sbjct: 1046 QVTRQPIKGRKKGGGIRFGEMERDSMLAHGASYLLHDRLHTCSDHHIADVCSLCGSILTS 1105

Query: 674  SFVQPPKRAVREIGGLPPGKAPKRVTCHACKTSKGMETVAMPYVFKYLAAELAAMNIKMT 733
            + VQP KRAVREIGGLPPGKAPKRV CHACKTSKGMETVAMPYVFKYLAAELAAMNI+MT
Sbjct: 1106 TLVQPQKRAVREIGGLPPGKAPKRVICHACKTSKGMETVAMPYVFKYLAAELAAMNIRMT 1165

Query: 734  LQLSSGA 740
            LQLS+ A
Sbjct: 1166 LQLSNAA 1172

[Close]

BLAST of Cucsat.G17440 vs. ExPASy TrEMBL
Match: A0A6J1GI72 (DNA-directed RNA polymerase subunit beta OS=Cucurbita moschata OX=3662 GN=LOC111454138 PE=3 SV=1)

HSP 1 Score: 1375 bits (3560), Expect = 0.0
Identity = 671/727 (92.30%), Postives = 701/727 (96.42%), Query Frame = 0


Query: 14   RAGFTVQAERLNFLRFVSHFRAVHRGASFAGLRTTTVRKLLPESWGFLCPVHTPDGEPCG 73
            RAGFTVQAERLNFLRF+SHFRAVHRGASFAGLRTTTVRKLLPESWGFLCPVHTPDGEPCG
Sbjct: 446  RAGFTVQAERLNFLRFISHFRAVHRGASFAGLRTTTVRKLLPESWGFLCPVHTPDGEPCG 505

Query: 74   LLNHLTSTCRITSHFNSQGKVRDFYKIRTSILSVLIAVGMIPSLPKLVQMGLPDFLNVLL 133
            LLNHLTSTCRITS+FNSQGKVRDF+KIR SILSVLIAVGMIPSLPKLVQMG PD LNV+L
Sbjct: 506  LLNHLTSTCRITSYFNSQGKVRDFFKIRASILSVLIAVGMIPSLPKLVQMGPPDVLNVIL 565

Query: 134  DGRIVGYISSNEVEKIVAHLRRLKVLSPHVIPDDLEVGYVPLSISGAYPGLYLFTSPSRF 193
            DGRIVGYISS EVEK+VAHLR+LKV SPHVIP+DLEVGYVPLSI GAYPGL+LFTSPSRF
Sbjct: 566  DGRIVGYISSGEVEKVVAHLRQLKVSSPHVIPEDLEVGYVPLSICGAYPGLFLFTSPSRF 625

Query: 194  VRPVKNLSISPEDNHNIELIGPFEQVFMEIRCPDGGDGGRKDEFPATHEEIHPTGMLSVV 253
            VRPV+NLSIS E+N NIELIGPFEQVFMEIRCPDGGDGGRKDEFPATHEEIHPTGMLSVV
Sbjct: 626  VRPVRNLSISSEENLNIELIGPFEQVFMEIRCPDGGDGGRKDEFPATHEEIHPTGMLSVV 685

Query: 254  ANLTPWSDHNQSPRNMYQCQMAKQTMAFSLQAIRYRADQKLYHLQTPQTPIVRTSTYTKY 313
             NLTPWSDHNQSPRNMYQCQMAKQTMAFSLQAI++RADQKLYHLQTPQTPIVRTSTY KY
Sbjct: 686  GNLTPWSDHNQSPRNMYQCQMAKQTMAFSLQAIQFRADQKLYHLQTPQTPIVRTSTYMKY 745

Query: 314  NIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVERGMFHGQIYQTETIDLSDQGNRSSR 373
            NIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVERGM+HGQIYQTETIDLS+Q +RSSR
Sbjct: 746  NIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVERGMYHGQIYQTETIDLSEQSSRSSR 805

Query: 374  SQKMFRRSNIDTSVRSIIDADGLPYVGQMIQPDEPYCSIYDEVAGTTRTMKLKGSEAVIV 433
            SQK+FRRSNID SVRS ID+DGLPYVGQMI+PDEPYCSIYDEVAGTTR MKLKGSE V V
Sbjct: 806  SQKLFRRSNIDKSVRSHIDSDGLPYVGQMIKPDEPYCSIYDEVAGTTRNMKLKGSEPVFV 865

Query: 434  DYVSVDVKNKNNPQKVNIRFRRPRNPMIGDKFSSRHGQKGVCSQLWPDVDMPFCGATGMR 493
            DYVSVDVKNK +PQKVNIRFR PRNP+IGDKFSSRHGQKGVCSQLWPDVDMPF GATGMR
Sbjct: 866  DYVSVDVKNKKHPQKVNIRFRHPRNPVIGDKFSSRHGQKGVCSQLWPDVDMPFSGATGMR 925

Query: 494  PDLIINPHAFPSRMTIAMLMESVAAKGGCLNGEFVNATPFRSSVNKTNAGDEETNGETLV 553
            PDLIINPHAFPSRMTIAMLMESVAAKGGCLNGEF+NATPF+SSV KTNAGDEE+  E+LV
Sbjct: 926  PDLIINPHAFPSRMTIAMLMESVAAKGGCLNGEFINATPFKSSVKKTNAGDEESKTESLV 985

Query: 554  DELGSTLIKKGFNYHGLEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKYQVRSTGTVD 613
            DELGSTL+KKGFNYHG+EVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKYQVRSTGTVD
Sbjct: 986  DELGSTLVKKGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKYQVRSTGTVD 1045

Query: 614  QVTRQPIKGRKKGGGIRFGEMERDSMLAHGASYLLHDRLHTCSDHHIADVCSLCGSVLTS 673
            QVTRQPIKGRKKGGGIRFGEMERDSMLAHGASYLLHDRLHTCSDHHIADVCSLCGS+LTS
Sbjct: 1046 QVTRQPIKGRKKGGGIRFGEMERDSMLAHGASYLLHDRLHTCSDHHIADVCSLCGSILTS 1105

Query: 674  SFVQPPKRAVREIGGLPPGKAPKRVTCHACKTSKGMETVAMPYVFKYLAAELAAMNIKMT 733
            + VQP KRAVREIGGLPPGKAPKRV CHACKTSKGMETVAMPYVFKYLAAELAAMNI+MT
Sbjct: 1106 TLVQPQKRAVREIGGLPPGKAPKRVICHACKTSKGMETVAMPYVFKYLAAELAAMNIRMT 1165

Query: 734  LQLSSGA 740
            LQLS+ A
Sbjct: 1166 LQLSNAA 1172

The following BLAST results are available for this feature:

BLAST of Cucsat.G17440 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4I366	0.0e+00	75.72	DNA-directed RNA polymerase I subunit 2 OS=Arabidopsis thaliana OX=3702 GN=NRPA2...	[more]
B8JKD7	4.6e-188	49.11	DNA-directed RNA polymerase I subunit RPA2 OS=Danio rerio OX=7955 GN=polr1b PE=3...	[more]
Q9H9Y6	3.0e-187	49.66	DNA-directed RNA polymerase I subunit RPA2 OS=Homo sapiens OX=9606 GN=POLR1B PE=...	[more]
Q9P7X8	1.1e-186	47.77	Probable DNA-directed RNA polymerase I subunit RPA2 OS=Schizosaccharomyces pombe...	[more]
Q5REE8	2.2e-185	49.45	DNA-directed RNA polymerase I subunit RPA2 OS=Pongo abelii OX=9601 GN=POLR1B PE=...	[more]

BLAST of Cucsat.G17440 vs. NCBI nr


Match Name	Identity	Description
XP_004146776.1	100.00	DNA-directed RNA polymerase I subunit 2 [Cucumis sativus]	[more]
KAE8647280.1	100.00	hypothetical protein Csa_002964 [Cucumis sativus]	[more]
XP_008445376.1	98.35	PREDICTED: DNA-directed RNA polymerase I subunit 2 [Cucumis melo]	[more]
KAA0064800.1	98.35	DNA-directed RNA polymerase I subunit 2 [Cucumis melo var. makuwa]	[more]
XP_038886021.1	96.15	DNA-directed RNA polymerase I subunit 2 isoform X1 [Benincasa hispida]	[more]

BLAST of Cucsat.G17440 vs. ExPASy TrEMBL


Match Name	Identity	Description
A0A0A0KIZ8	100.00	DNA-directed RNA polymerase subunit beta OS=Cucumis sativus OX=3659 GN=Csa_6G400...	[more]
A0A5A7VC96	98.35	DNA-directed RNA polymerase subunit beta OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A1S3BCJ8	98.35	DNA-directed RNA polymerase subunit beta OS=Cucumis melo OX=3656 GN=LOC103488429...	[more]
A0A6J1KKK5	92.30	DNA-directed RNA polymerase subunit beta OS=Cucurbita maxima OX=3661 GN=LOC11149...	[more]
A0A6J1GI72	92.30	DNA-directed RNA polymerase subunit beta OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007642	RNA polymerase Rpb2, domain 2	PFAM	PF04561	RNA_pol_Rpb2_2	coord: 190..365 e-value: 2.1E-13 score: 50.3
IPR007644	RNA polymerase, beta subunit, protrusion	PFAM	PF04563	RNA_pol_Rpb2_1	coord: 17..409 e-value: 9.5E-33 score: 113.8
None	No IPR available	GENE3D	3.90.1100.10		coord: 9..169 e-value: 1.2E-20 score: 75.9
None	No IPR available	PANTHER	PTHR20856:SF5	DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA2	coord: 10..446
None	No IPR available	SUPERFAMILY	64484	beta and beta-prime subunits of DNA dependent RNA-polymerase	coord: 9..445
IPR037034	RNA polymerase Rpb2, domain 2 superfamily	GENE3D	3.90.1110.10	RNA polymerase Rpb2, domain 2	coord: 170..356 e-value: 1.6E-53 score: 183.2
IPR015712	DNA-directed RNA polymerase, subunit 2	PANTHER	PTHR20856	DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2	coord: 10..446

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsat.G17440.T21	Cucsat.G17440.T21	mRNA
Cucsat.G17440.T20	Cucsat.G17440.T20	mRNA
Cucsat.G17440.T23	Cucsat.G17440.T23	mRNA
Cucsat.G17440.T18	Cucsat.G17440.T18	mRNA
Cucsat.G17440.T19	Cucsat.G17440.T19	mRNA
Cucsat.G17440.T14	Cucsat.G17440.T14	mRNA
Cucsat.G17440.T15	Cucsat.G17440.T15	mRNA
Cucsat.G17440.T16	Cucsat.G17440.T16	mRNA
Cucsat.G17440.T17	Cucsat.G17440.T17	mRNA
Cucsat.G17440.T10	Cucsat.G17440.T10	mRNA
Cucsat.G17440.T13	Cucsat.G17440.T13	mRNA
Cucsat.G17440.T1	Cucsat.G17440.T1	mRNA
Cucsat.G17440.T4	Cucsat.G17440.T4	mRNA
Cucsat.G17440.T22	Cucsat.G17440.T22	mRNA
Cucsat.G17440.T11	Cucsat.G17440.T11	mRNA
Cucsat.G17440.T12	Cucsat.G17440.T12	mRNA
Cucsat.G17440.T8	Cucsat.G17440.T8	mRNA
Cucsat.G17440.T9	Cucsat.G17440.T9	mRNA
Cucsat.G17440.T2	Cucsat.G17440.T2	mRNA
Cucsat.G17440.T3	Cucsat.G17440.T3	mRNA
Cucsat.G17440.T6	Cucsat.G17440.T6	mRNA
Cucsat.G17440.T7	Cucsat.G17440.T7	mRNA
Cucsat.G17440.T5	Cucsat.G17440.T5	mRNA
Cucsat.G17440.T25	Cucsat.G17440.T25	mRNA
Cucsat.G17440.T24	Cucsat.G17440.T24	mRNA
Cucsat.G17440.T26	Cucsat.G17440.T26	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044260	cellular macromolecule metabolic process
biological_process	GO:0009561	megagametogenesis
biological_process	GO:0016310	phosphorylation
biological_process	GO:0019538	protein metabolic process
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005736	RNA polymerase I complex
molecular_function	GO:0140640	catalytic activity, acting on a nucleic acid
molecular_function	GO:0140096	catalytic activity, acting on a protein
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0016301	kinase activity
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0032549	ribonucleoside binding