Cucsat.G17404 (gene) Cucumber (B10) v3

Overview


Name	Cucsat.G17404
Type	gene
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	Ras-related protein
Location	ctg27: 1701969 .. 1705684 (-)
RNA-Seq Expression	Cucsat.G17404
Synteny	Cucsat.G17404

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCATCTTCTTTTCTTCGACATATCGGATTCGGATCGGCTTTCCCGAATCCGATACGTCGTTTTTACGCGAGACAATGTCGTTCGTTCTTCTTCGCGATTCAATAGAGAAAGTTGAGTTGTCAAATATTGGGAAAACTTTTAACAGCCATTAACGAACCAGTCCCGAAGGCGCAAAGCTTTTTTTTTTCTCTTTTGCAGAATTCTCCAATTGCTGCACGGACTCTACGAAAGTTTAATCAACAAACCAATTACTTGGATCGGTTGTTTTTACATACCCTTTATCGCCATGGGTTGCTCCTCCTCTGTCCCAGGTATTTTCAATTCTTGAATTTCATTGCTTCTGCTTTGTTACGTCTATCAGATTCCTTATTCGTTTATTTATGTTTGATTAAAGAGGGTGTATTGAGAATTTTGGAGGTTGATTGTTTGGTCTGTTCTATGTTGTTAATTATGGAGTCGTCTTGGTTCCTTGATTTCTTTAACGGGGGGACATTAGGGTTTGGTGGGTTTTGCCTTAGGTTTCTACTATTAAGGTTTTAATGTTACCCACAGGAGTTTTGTTGAGTTTCATTGATCTTTTGGGGGGTTAATAATGCAGACAGGGCTTCTGGGCGATCGGGTGGGCTTAATCCAGAGAACAGTGCAGCTGATTCCAAGAATTTACGCGTCAAGGTATTTGAGAAGCACCCAACTCATTTACTTGTAGTTTTCCTTTTCCTTTTACTGCTAATGGACTCTATTACAGTCTGATGACTGGTAATGTTGTTGACTAAGGATTCTTTCCTGTAAGAAGACAAATATACGATGGCTAACATGCAACGATCGTTTTTGAACTGATAATTGAGCTATGAATTTAATGATATCTGAAGCTAAAGATATGCCTATGTGTCATTTCTTATAATGCTTAAAAGTTTTTATGATATCTTCTTTTTCCATCTTCTCTTTCTGTCTTTATGCAGCTTGTCCTGCTAGGTGATTCTGGTGTTGGTAAAAGCTGTATTGTTCTTCGCTTTGTCCGTGGTCAGTTTGATCCAACGTCTAAGGTTAGGGCATGCTACAGTCTGTAAATTCTTGAAATAAATATGCGCTTGATACAAAAAAATTTACATTTTTCTCATTGTATTCCCAGAATAACTACAATCTTTTGATAAGATGTGTTTTGTTGAGAGAATTTAGGTAACAGTTGGAGCATCATTCTTATCACAAACGATAGCTCTTCAAGATTCCACAACAGTGAAGTTTGAAATATGGGATACTGCTGGGCAAGAGAGGTAGAATTATCCAAATTCTTAGTTGGTATTTCGCATCCTCGAACATGTGTCTTTTAACTTCTTAGCAAGTAACAATATTCCCATTGGTAGCCCTTTTCTGTTTATTTTCAAGTTCACAAGAGCTTGTTGTTGCAAGAGGTTATAGCTGTTGATTTTTCTTGATTTAGGTATGCTGCATTAGCACCACTTTACTATAGAGGTGCTGCAGTTGCAGTTATTGTATATGATATAACAAGCTCCGATTCCTTTGCCAAAGCACAATATTGGGTTAAGGTATGTTTTAAATTGATGAGGTAGTTTCAGTCTTATATCATTAGTTGAGCATCCCACTCACCAGTGACCAAATTTAGAACAAAATGGAATTCTTTTTTATCGATGAGCACATTATCAGATAATTATACTCGTCACTATCTGTCTGTTTTCCCCTTGTACCTTCTCCTCATTTTTGGTTTACATGCATGGTATATGGATGTTTCGCATTTCCTTTGATGATCCTCAGTCCTGATTCTCTCACTCCGGCACTCCGATTTTTCATTCCAAGTATAATTGTTGTTGTGTTGTATGGGTGGGTGGGGGGGGGGGGATCTTTTTTGGGTTCAGATCAATCAATGCTGACCATGGTAACATTTGTAGTTGGACGTTAGAAAAGTGCCTACTTGCCCAAGGAACAACTGATTTTTTAAAACTTGTGGCTCTTTTTTGTTGAACTGATAACTATTTTAAAAAGGCTGTGTCTGTAAGCTACGATATTCACAATTCATATTGGGCACTTACAGGAGCTACAGAAGCATGGCAGCCCTGATATCATTTTGGCATTGGTCGGTAACAAAGCTGATCTTCAAGAGAAAAGGAAAGTAACTGTTCAGGTAAGTTCAGTGTTATTCAATCAAATGCATTTTCATTCTCTTCCTGTCTTCTTTATTTATTCTTAGTTCTAATTTGTTCTTTTTTCAAAATGGGGAAAGATATTTTAACTCACTAATGTGAGATATTTATGTTTCACTTTGAAGGATGGGACTGAGTATGCAGAGAAGAATGGAATGTTCTTTATCGAGACATCTGCGAAGACTGCAGATAATATAAATGAGCTGTTTGAGGTATTTCCGATTTTATCCTTTTTTGTACGACTTTCATAGCCTCTGTTCATAAACAAGCAAGGTGAATAATTGTGTATAGCAATTCTTTTATGATATTTCACTGTTGGCTGAGCGGTATTAAACATTTGAATGTTGCTGTTTAAGGTTGGAAGTTCCAGAACCTGCATAAGTCGTAGTCGTAGTTAGTAAACTTTATAATAGTCATTAGATTTGCGAAACTTTAGCAGCCAATTCTCTCTTGGTGATAGTGCTGAACTTAAAGAAGATGTGAGGTTGGAACGTTCTTTTACCCAGCTTTTGTTGGTGGTTGTATCTTTCATTATGCTATCTCCATAGGGTGTCAAATCAGGTTCCATGCTGCCAGAACGTTCATCTCAGGTCTCTTTTGGTGGTTCTATCATGATTGCTCAGCGCCACATTTAAAATCTGGCCCGCAGGAGGACAATTTTAATTGGAAATTTTCTGGCTATTAGCTCTTAGCTGACTTGTTGTTTGTTTGGATTGAAATGCTGTTTTTTTACCTCTGATTGGTCTGTAGTGCATGTTTTATTGAACGTCTCTCTGTCTCTGTCTCTGTCTCTGTCTCTGTCTCTCTCTAGTTCATGATTCTACTGTTAAAGGCTTAGGATTTTTCCTTTTTAAGTGTGCTGTTTTTGTTGAATGACGGATGACTGGTCCTCTGTAAATTAGTTAGTTTCTATATTTCATCCGAAAATTGAAATCTTTGAGTAACACATTTCATGGCTTGAGCTACGTGAAGACGTTCAATAGTTGGTTTGATCACTTAGCGATGAGAAACCCTGTCTCTTTCATATAAAGTTTCTCTTGTAATGTATGTCACTCATACTGAGAGGGGCAGTTTAAGATTCTTGGCTTTATAGATTCTGCTACATGTTTTTATTCACAATACACTTGGAGATCAACCAATTCTTCACTATTTGATTTGGCAGGAGATTGCGAAGCGGTTGCCACGACCAACTTCCTCATGATCCTACGCGACATGAATGATGTTGTCAACAGCTTATTTTAAAGGAAATCTGCCTGCTCTCATGTGATAGATATGTGTATAGTTTGGTGAGTCTGCAGTCTTTCGCTTTGTTATTTGATTTGACTAGTTGATACTTTCAGCCCAAAGTGTAACATTAAACAGATATGAAAATGGTGAAAGATTCATTCCCCTTTAAACCATAATCTGCAATGTAAACTATATTTCCTGAGACTGACAGAAAGATTACATAGGTTTTATTTCTTTTTCTTTTTAGATGTTCAAATGGGGATGGAGAAGTTTAAACTCTATTTGAGATCTTTAAATGCATCATTGAAGGGATCAAAGAAAGTACCATAAAATGGATTTGGTTTTCTTTACCTGGGGTTTTGGTGGATTATTTTTGTCATTTTCGATTAGATTATGTTGCAAACCTACCGTGAGTTAGCCTAGT

Coding sequence (CDS)

ATGGGTTGCTCCTCCTCTGTCCCAGACAGGGCTTCTGGGCGATCGGGTGGGCTTAATCCAGAGAACAGTGCAGCTGATTCCAAGAATTTACGCGTCAAGCTTGTCCTGCTAGGTGATTCTGGTGTTGGTAAAAGCTGTATTGTTCTTCGCTTTGTCCGTGGTCAGTTTGATCCAACGTCTAAGGTAACAGTTGGAGCATCATTCTTATCACAAACGATAGCTCTTCAAGATTCCACAACAGTGAAGTTTGAAATATGGGATACTGCTGGGCAAGAGAGGTATGCTGCATTAGCACCACTTTACTATAGAGGTGCTGCAGTTGCAGTTATTGTATATGATATAACAAGCTCCGATTCCTTTGCCAAAGCACAATATTGGGTTAAGGAGCTACAGAAGCATGGCAGCCCTGATATCATTTTGGCATTGGTCGGTAACAAAGCTGATCTTCAAGAGAAAAGGAAAGTAACTGTTCAGGATGGGACTGAGTATGCAGAGAAGAATGGAATGTTCTTTATCGAGACATCTGCGAAGACTGCAGATAATATAAATGAGCTGTTTGAGGAGATTGCGAAGCGGTTGCCACGACCAACTTCCTCATGA

Protein sequence

MGCSSSVPDRASGRSGGLNPENSAADSKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVIVYDITSSDSFAKAQYWVKELQKHGSPDIILALVGNKADLQEKRKVTVQDGTEYAEKNGMFFIETSAKTADNINELFEEIAKRLPRPTSS

Homology

[Close]

BLAST of Cucsat.G17404 vs. ExPASy Swiss-Prot
Match: Q9CB01 (Ras-related protein RABF1 OS=Arabidopsis thaliana OX=3702 GN=RABF1 PE=1 SV=1)

HSP 1 Score: 311.2 bits (796), Expect = 8.3e-84
Identity = 161/189 (85.19%), Postives = 172/189 (91.01%), Query Frame = 0


Query: 1   MGCSSSVPDRASGRSGGL-NPENSA-ADSKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDP 60
           MGC+SS+PDR SG   GL N EN+  AD+KNLRVKLVLLGDSGVGKSCIVLRFVRGQFD 
Sbjct: 1   MGCASSLPDRNSGTLSGLSNSENAVPADAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDA 60

Query: 61  TSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVIVYDITSSD 120
           TSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERY+ALAPLYYRGA VAVIVYDITS +
Sbjct: 61  TSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYSALAPLYYRGAGVAVIVYDITSPE 120

Query: 121 SFAKAQYWVKELQKHGSPDIILALVGNKADLQEKRKVTVQDGTEYAEKNGMFFIETSAKT 180
           SF KAQYWVKELQKHGSPDI++ALVGNKADL EKR+V  +DG E AEKNGMFFIETSAKT
Sbjct: 121 SFKKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPTEDGMELAEKNGMFFIETSAKT 180

Query: 181 ADNINELFE 188
           ADNIN+LFE
Sbjct: 181 ADNINQLFE 189

[Close]

BLAST of Cucsat.G17404 vs. ExPASy Swiss-Prot
Match: Q58DS9 (Ras-related protein Rab-5C OS=Bos taurus OX=9913 GN=RAB5C PE=2 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 2.8e-55
Identity = 106/175 (60.57%), Postives = 135/175 (77.14%), Query Frame = 0


Query: 12  SGRSGGLNPENSAADSKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQ 71
           +GR G   P   AA +K  + KLVLLG+S VGKS +VLRFV+GQF    + T+GA+FL+Q
Sbjct: 2   AGRGGAARPNGPAAGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQ 61

Query: 72  TIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVIVYDITSSDSFAKAQYWVKELQ 131
           T+ L D TTVKFEIWDTAGQERY +LAP+YYRGA  A++VYDIT++D+FA+A+ WVKELQ
Sbjct: 62  TVCL-DDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQ 121

Query: 132 KHGSPDIILALVGNKADLQEKRKVTVQDGTEYAEKNGMFFIETSAKTADNINELF 187
           +  SP+I++AL GNKADL  KR V  Q+   YAE N + F+ETSAKTA N+NE+F
Sbjct: 122 RQASPNIVIALAGNKADLASKRAVEFQEAQAYAEDNSLLFMETSAKTAMNVNEIF 175

[Close]

BLAST of Cucsat.G17404 vs. ExPASy Swiss-Prot
Match: P51147 (Ras-related protein Rab-5C OS=Canis lupus familiaris OX=9615 GN=RAB5C PE=2 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 6.2e-55
Identity = 105/175 (60.00%), Postives = 135/175 (77.14%), Query Frame = 0


Query: 12  SGRSGGLNPENSAADSKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQ 71
           +GR G   P   AA +K  + KLVLLG+S VGKS +VLRFV+GQF    + T+GA+FL+Q
Sbjct: 2   AGRGGAARPNGPAAGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQ 61

Query: 72  TIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVIVYDITSSDSFAKAQYWVKELQ 131
           T+ L D TTVKFEIWDTAGQERY +LAP+YYRGA  A++VYDIT++D+FA+A+ WVKELQ
Sbjct: 62  TVCL-DDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQ 121

Query: 132 KHGSPDIILALVGNKADLQEKRKVTVQDGTEYAEKNGMFFIETSAKTADNINELF 187
           +  SP+I++AL GNKADL  KR V  Q+   YA+ N + F+ETSAKTA N+NE+F
Sbjct: 122 RQASPNIVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIF 175

[Close]

BLAST of Cucsat.G17404 vs. ExPASy Swiss-Prot
Match: P51148 (Ras-related protein Rab-5C OS=Homo sapiens OX=9606 GN=RAB5C PE=1 SV=2)

HSP 1 Score: 215.3 bits (547), Expect = 6.2e-55
Identity = 105/175 (60.00%), Postives = 135/175 (77.14%), Query Frame = 0


Query: 12  SGRSGGLNPENSAADSKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQ 71
           +GR G   P   AA +K  + KLVLLG+S VGKS +VLRFV+GQF    + T+GA+FL+Q
Sbjct: 2   AGRGGAARPNGPAAGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQ 61

Query: 72  TIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVIVYDITSSDSFAKAQYWVKELQ 131
           T+ L D TTVKFEIWDTAGQERY +LAP+YYRGA  A++VYDIT++D+FA+A+ WVKELQ
Sbjct: 62  TVCL-DDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQ 121

Query: 132 KHGSPDIILALVGNKADLQEKRKVTVQDGTEYAEKNGMFFIETSAKTADNINELF 187
           +  SP+I++AL GNKADL  KR V  Q+   YA+ N + F+ETSAKTA N+NE+F
Sbjct: 122 RQASPNIVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIF 175

[Close]

BLAST of Cucsat.G17404 vs. ExPASy Swiss-Prot
Match: P35278 (Ras-related protein Rab-5C OS=Mus musculus OX=10090 GN=Rab5c PE=1 SV=2)

HSP 1 Score: 215.3 bits (547), Expect = 6.2e-55
Identity = 105/175 (60.00%), Postives = 135/175 (77.14%), Query Frame = 0


Query: 12  SGRSGGLNPENSAADSKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQ 71
           +GR G   P   AA +K  + KLVLLG+S VGKS +VLRFV+GQF    + T+GA+FL+Q
Sbjct: 2   AGRGGAARPNGPAAGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQ 61

Query: 72  TIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVIVYDITSSDSFAKAQYWVKELQ 131
           T+ L D TTVKFEIWDTAGQERY +LAP+YYRGA  A++VYDIT++D+FA+A+ WVKELQ
Sbjct: 62  TVCL-DDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQ 121

Query: 132 KHGSPDIILALVGNKADLQEKRKVTVQDGTEYAEKNGMFFIETSAKTADNINELF 187
           +  SP+I++AL GNKADL  KR V  Q+   YA+ N + F+ETSAKTA N+NE+F
Sbjct: 122 RQASPNIVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIF 175

[Close]

BLAST of Cucsat.G17404 vs. NCBI nr
Match: XP_004140073.1 (ras-related protein RABF1 [Cucumis sativus] >KGN47841.1 hypothetical protein Csa_002805 [Cucumis sativus])

HSP 1 Score: 364 bits (934), Expect = 2.57e-126
Identity = 187/187 (100.00%), Postives = 187/187 (100.00%), Query Frame = 0


Query: 1   MGCSSSVPDRASGRSGGLNPENSAADSKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTS 60
           MGCSSSVPDRASGRSGGLNPENSAADSKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTS
Sbjct: 1   MGCSSSVPDRASGRSGGLNPENSAADSKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTS 60

Query: 61  KVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVIVYDITSSDSF 120
           KVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVIVYDITSSDSF
Sbjct: 61  KVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVIVYDITSSDSF 120

Query: 121 AKAQYWVKELQKHGSPDIILALVGNKADLQEKRKVTVQDGTEYAEKNGMFFIETSAKTAD 180
           AKAQYWVKELQKHGSPDIILALVGNKADLQEKRKVTVQDGTEYAEKNGMFFIETSAKTAD
Sbjct: 121 AKAQYWVKELQKHGSPDIILALVGNKADLQEKRKVTVQDGTEYAEKNGMFFIETSAKTAD 180

Query: 181 NINELFE 187
           NINELFE
Sbjct: 181 NINELFE 187

[Close]

BLAST of Cucsat.G17404 vs. NCBI nr
Match: XP_008456515.1 (PREDICTED: ras-related protein RABF1 [Cucumis melo])

HSP 1 Score: 362 bits (930), Expect = 1.05e-125
Identity = 186/187 (99.47%), Postives = 187/187 (100.00%), Query Frame = 0


Query: 1   MGCSSSVPDRASGRSGGLNPENSAADSKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTS 60
           MGCSSSVPDRASGRSGGLNPENSAADSKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTS
Sbjct: 1   MGCSSSVPDRASGRSGGLNPENSAADSKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTS 60

Query: 61  KVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVIVYDITSSDSF 120
           KVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVIVYDITSSDSF
Sbjct: 61  KVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVIVYDITSSDSF 120

Query: 121 AKAQYWVKELQKHGSPDIILALVGNKADLQEKRKVTVQDGTEYAEKNGMFFIETSAKTAD 180
           AKAQYWVKELQKHGSPDIILALVGNKADLQEKRKV+VQDGTEYAEKNGMFFIETSAKTAD
Sbjct: 121 AKAQYWVKELQKHGSPDIILALVGNKADLQEKRKVSVQDGTEYAEKNGMFFIETSAKTAD 180

Query: 181 NINELFE 187
           NINELFE
Sbjct: 181 NINELFE 187

[Close]

BLAST of Cucsat.G17404 vs. NCBI nr
Match: KAA0036491.1 (ras-related protein RABF1 [Cucumis melo var. makuwa] >TYJ99995.1 ras-related protein RABF1 [Cucumis melo var. makuwa])

HSP 1 Score: 362 bits (930), Expect = 1.44e-125
Identity = 186/187 (99.47%), Postives = 187/187 (100.00%), Query Frame = 0


Query: 1   MGCSSSVPDRASGRSGGLNPENSAADSKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTS 60
           MGCSSSVPDRASGRSGGLNPENSAADSKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTS
Sbjct: 1   MGCSSSVPDRASGRSGGLNPENSAADSKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTS 60

Query: 61  KVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVIVYDITSSDSF 120
           KVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVIVYDITSSDSF
Sbjct: 61  KVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVIVYDITSSDSF 120

Query: 121 AKAQYWVKELQKHGSPDIILALVGNKADLQEKRKVTVQDGTEYAEKNGMFFIETSAKTAD 180
           AKAQYWVKELQKHGSPDIILALVGNKADLQEKRKV+VQDGTEYAEKNGMFFIETSAKTAD
Sbjct: 121 AKAQYWVKELQKHGSPDIILALVGNKADLQEKRKVSVQDGTEYAEKNGMFFIETSAKTAD 180

Query: 181 NINELFE 187
           NINELFE
Sbjct: 181 NINELFE 187

[Close]

BLAST of Cucsat.G17404 vs. NCBI nr
Match: XP_038884272.1 (ras-related protein RABF1 [Benincasa hispida])

HSP 1 Score: 361 bits (927), Expect = 3.00e-125
Identity = 185/187 (98.93%), Postives = 187/187 (100.00%), Query Frame = 0


Query: 1   MGCSSSVPDRASGRSGGLNPENSAADSKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTS 60
           MGCSSSVPDRASGRSGGLNPEN+AADSKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTS
Sbjct: 1   MGCSSSVPDRASGRSGGLNPENNAADSKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTS 60

Query: 61  KVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVIVYDITSSDSF 120
           KVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVIVYDITSSDSF
Sbjct: 61  KVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVIVYDITSSDSF 120

Query: 121 AKAQYWVKELQKHGSPDIILALVGNKADLQEKRKVTVQDGTEYAEKNGMFFIETSAKTAD 180
           AKAQYWVKELQKHGSPDIILALVGNKADLQEKRKV+VQDGTEYAEKNGMFFIETSAKTAD
Sbjct: 121 AKAQYWVKELQKHGSPDIILALVGNKADLQEKRKVSVQDGTEYAEKNGMFFIETSAKTAD 180

Query: 181 NINELFE 187
           NINELFE
Sbjct: 181 NINELFE 187

[Close]

BLAST of Cucsat.G17404 vs. NCBI nr
Match: XP_022956144.1 (ras-related protein RABF1-like [Cucurbita moschata] >KAG6602301.1 Ras-related protein RABF1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7032982.1 Ras-related protein RABF1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 358 bits (920), Expect = 3.50e-124
Identity = 184/187 (98.40%), Postives = 186/187 (99.47%), Query Frame = 0


Query: 1   MGCSSSVPDRASGRSGGLNPENSAADSKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTS 60
           MGCSSSVPDRASG SGG+NPENSAADSKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTS
Sbjct: 1   MGCSSSVPDRASGPSGGVNPENSAADSKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTS 60

Query: 61  KVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVIVYDITSSDSF 120
           KVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVIVYDITSSDSF
Sbjct: 61  KVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVIVYDITSSDSF 120

Query: 121 AKAQYWVKELQKHGSPDIILALVGNKADLQEKRKVTVQDGTEYAEKNGMFFIETSAKTAD 180
           AKAQYWVKELQKHGSPDIILALVGNKADLQEKRKV+VQDGTEYAEKNGMFFIETSAKTAD
Sbjct: 121 AKAQYWVKELQKHGSPDIILALVGNKADLQEKRKVSVQDGTEYAEKNGMFFIETSAKTAD 180

Query: 181 NINELFE 187
           NINELFE
Sbjct: 181 NINELFE 187

[Close]

BLAST of Cucsat.G17404 vs. ExPASy TrEMBL
Match: A0A0A0KJ92 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G406530 PE=4 SV=1)

HSP 1 Score: 364 bits (934), Expect = 1.25e-126
Identity = 187/187 (100.00%), Postives = 187/187 (100.00%), Query Frame = 0


Query: 1   MGCSSSVPDRASGRSGGLNPENSAADSKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTS 60
           MGCSSSVPDRASGRSGGLNPENSAADSKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTS
Sbjct: 1   MGCSSSVPDRASGRSGGLNPENSAADSKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTS 60

Query: 61  KVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVIVYDITSSDSF 120
           KVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVIVYDITSSDSF
Sbjct: 61  KVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVIVYDITSSDSF 120

Query: 121 AKAQYWVKELQKHGSPDIILALVGNKADLQEKRKVTVQDGTEYAEKNGMFFIETSAKTAD 180
           AKAQYWVKELQKHGSPDIILALVGNKADLQEKRKVTVQDGTEYAEKNGMFFIETSAKTAD
Sbjct: 121 AKAQYWVKELQKHGSPDIILALVGNKADLQEKRKVTVQDGTEYAEKNGMFFIETSAKTAD 180

Query: 181 NINELFE 187
           NINELFE
Sbjct: 181 NINELFE 187

[Close]

BLAST of Cucsat.G17404 vs. ExPASy TrEMBL
Match: A0A1S3C444 (ras-related protein RABF1 OS=Cucumis melo OX=3656 GN=LOC103496444 PE=4 SV=1)

HSP 1 Score: 362 bits (930), Expect = 5.07e-126
Identity = 186/187 (99.47%), Postives = 187/187 (100.00%), Query Frame = 0


Query: 1   MGCSSSVPDRASGRSGGLNPENSAADSKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTS 60
           MGCSSSVPDRASGRSGGLNPENSAADSKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTS
Sbjct: 1   MGCSSSVPDRASGRSGGLNPENSAADSKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTS 60

Query: 61  KVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVIVYDITSSDSF 120
           KVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVIVYDITSSDSF
Sbjct: 61  KVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVIVYDITSSDSF 120

Query: 121 AKAQYWVKELQKHGSPDIILALVGNKADLQEKRKVTVQDGTEYAEKNGMFFIETSAKTAD 180
           AKAQYWVKELQKHGSPDIILALVGNKADLQEKRKV+VQDGTEYAEKNGMFFIETSAKTAD
Sbjct: 121 AKAQYWVKELQKHGSPDIILALVGNKADLQEKRKVSVQDGTEYAEKNGMFFIETSAKTAD 180

Query: 181 NINELFE 187
           NINELFE
Sbjct: 181 NINELFE 187

[Close]

BLAST of Cucsat.G17404 vs. ExPASy TrEMBL
Match: A0A5A7T4K9 (Ras-related protein RABF1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold360G00400 PE=4 SV=1)

HSP 1 Score: 362 bits (930), Expect = 6.98e-126
Identity = 186/187 (99.47%), Postives = 187/187 (100.00%), Query Frame = 0


Query: 1   MGCSSSVPDRASGRSGGLNPENSAADSKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTS 60
           MGCSSSVPDRASGRSGGLNPENSAADSKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTS
Sbjct: 1   MGCSSSVPDRASGRSGGLNPENSAADSKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTS 60

Query: 61  KVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVIVYDITSSDSF 120
           KVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVIVYDITSSDSF
Sbjct: 61  KVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVIVYDITSSDSF 120

Query: 121 AKAQYWVKELQKHGSPDIILALVGNKADLQEKRKVTVQDGTEYAEKNGMFFIETSAKTAD 180
           AKAQYWVKELQKHGSPDIILALVGNKADLQEKRKV+VQDGTEYAEKNGMFFIETSAKTAD
Sbjct: 121 AKAQYWVKELQKHGSPDIILALVGNKADLQEKRKVSVQDGTEYAEKNGMFFIETSAKTAD 180

Query: 181 NINELFE 187
           NINELFE
Sbjct: 181 NINELFE 187

[Close]

BLAST of Cucsat.G17404 vs. ExPASy TrEMBL
Match: A0A6J1GY77 (ras-related protein RABF1-like OS=Cucurbita moschata OX=3662 GN=LOC111457920 PE=4 SV=1)

HSP 1 Score: 358 bits (920), Expect = 1.70e-124
Identity = 184/187 (98.40%), Postives = 186/187 (99.47%), Query Frame = 0


Query: 1   MGCSSSVPDRASGRSGGLNPENSAADSKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTS 60
           MGCSSSVPDRASG SGG+NPENSAADSKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTS
Sbjct: 1   MGCSSSVPDRASGPSGGVNPENSAADSKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTS 60

Query: 61  KVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVIVYDITSSDSF 120
           KVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVIVYDITSSDSF
Sbjct: 61  KVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVIVYDITSSDSF 120

Query: 121 AKAQYWVKELQKHGSPDIILALVGNKADLQEKRKVTVQDGTEYAEKNGMFFIETSAKTAD 180
           AKAQYWVKELQKHGSPDIILALVGNKADLQEKRKV+VQDGTEYAEKNGMFFIETSAKTAD
Sbjct: 121 AKAQYWVKELQKHGSPDIILALVGNKADLQEKRKVSVQDGTEYAEKNGMFFIETSAKTAD 180

Query: 181 NINELFE 187
           NINELFE
Sbjct: 181 NINELFE 187

[Close]

BLAST of Cucsat.G17404 vs. ExPASy TrEMBL
Match: A0A6J1JQ66 (ras-related protein RABF1-like OS=Cucurbita maxima OX=3661 GN=LOC111487316 PE=4 SV=1)

HSP 1 Score: 356 bits (913), Expect = 1.98e-123
Identity = 182/187 (97.33%), Postives = 185/187 (98.93%), Query Frame = 0


Query: 1   MGCSSSVPDRASGRSGGLNPENSAADSKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTS 60
           MGCSSSVPDRASG SGG+NPENSAADSKNLRVKLVLLGDSGVGKSCIVL FVRGQFDPTS
Sbjct: 1   MGCSSSVPDRASGPSGGVNPENSAADSKNLRVKLVLLGDSGVGKSCIVLSFVRGQFDPTS 60

Query: 61  KVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVIVYDITSSDSF 120
           KVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVIVYDITSSDSF
Sbjct: 61  KVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVIVYDITSSDSF 120

Query: 121 AKAQYWVKELQKHGSPDIILALVGNKADLQEKRKVTVQDGTEYAEKNGMFFIETSAKTAD 180
           AKAQYWVKELQKHGSPDIILALVGNKADLQEKRKV++QDGTEYAEKNGMFFIETSAKTAD
Sbjct: 121 AKAQYWVKELQKHGSPDIILALVGNKADLQEKRKVSIQDGTEYAEKNGMFFIETSAKTAD 180

Query: 181 NINELFE 187
           NINELFE
Sbjct: 181 NINELFE 187

The following BLAST results are available for this feature:

BLAST of Cucsat.G17404 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9CB01	8.3e-84	85.19	Ras-related protein RABF1 OS=Arabidopsis thaliana OX=3702 GN=RABF1 PE=1 SV=1	[more]
Q58DS9	2.8e-55	60.57	Ras-related protein Rab-5C OS=Bos taurus OX=9913 GN=RAB5C PE=2 SV=1	[more]
P51147	6.2e-55	60.00	Ras-related protein Rab-5C OS=Canis lupus familiaris OX=9615 GN=RAB5C PE=2 SV=1	[more]
P51148	6.2e-55	60.00	Ras-related protein Rab-5C OS=Homo sapiens OX=9606 GN=RAB5C PE=1 SV=2	[more]
P35278	6.2e-55	60.00	Ras-related protein Rab-5C OS=Mus musculus OX=10090 GN=Rab5c PE=1 SV=2	[more]

BLAST of Cucsat.G17404 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004140073.1	2.57e-126	100.00	ras-related protein RABF1 [Cucumis sativus] >KGN47841.1 hypothetical protein Csa...	[more]
XP_008456515.1	1.05e-125	99.47	PREDICTED: ras-related protein RABF1 [Cucumis melo]	[more]
KAA0036491.1	1.44e-125	99.47	ras-related protein RABF1 [Cucumis melo var. makuwa] >TYJ99995.1 ras-related pro...	[more]
XP_038884272.1	3.00e-125	98.93	ras-related protein RABF1 [Benincasa hispida]	[more]
XP_022956144.1	3.50e-124	98.40	ras-related protein RABF1-like [Cucurbita moschata] >KAG6602301.1 Ras-related pr...	[more]

BLAST of Cucsat.G17404 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KJ92	1.25e-126	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G406530 PE=4 SV=1	[more]
A0A1S3C444	5.07e-126	99.47	ras-related protein RABF1 OS=Cucumis melo OX=3656 GN=LOC103496444 PE=4 SV=1	[more]
A0A5A7T4K9	6.98e-126	99.47	Ras-related protein RABF1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A6J1GY77	1.70e-124	98.40	ras-related protein RABF1-like OS=Cucurbita moschata OX=3662 GN=LOC111457920 PE=...	[more]
A0A6J1JQ66	1.98e-123	97.33	ras-related protein RABF1-like OS=Cucurbita maxima OX=3661 GN=LOC111487316 PE=4 ...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR00449	RASTRNSFRMNG	coord: 74..96 score: 46.44 coord: 136..149 score: 49.71 coord: 32..53 score: 50.56 coord: 55..71 score: 27.15
None	No IPR available	SMART	SM00173	ras_sub_4	coord: 33..179 e-value: 1.6E-10 score: 33.4
None	No IPR available	SMART	SM00175	rab_sub_5	coord: 32..172 e-value: 3.5E-46 score: 169.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	PANTHER	PTHR47978	FAMILY NOT NAMED	coord: 15..159
None	No IPR available	PANTHER	PTHR47978:SF10	RAB FAMILY GTPASE	coord: 15..159
None	No IPR available	PROSITE	PS51419	RAB	coord: 27..179 score: 25.582411
None	No IPR available	CDD	cd01860	Rab5_related	coord: 31..159 e-value: 5.37866E-86 score: 248.235
IPR001806	Small GTPase	SMART	SM00174	rho_sub_3	coord: 34..174 e-value: 5.9E-9 score: -4.0
IPR001806	Small GTPase	PFAM	PF00071	Ras	coord: 33..167 e-value: 6.4E-46 score: 155.9
IPR001806	Small GTPase	PROSITE	PS51421	RAS	coord: 21..179 score: 12.163214
IPR005225	Small GTP-binding protein domain	TIGRFAM	TIGR00231	TIGR00231	coord: 32..155 e-value: 3.9E-22 score: 76.7
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 22..177 e-value: 1.7E-50 score: 173.0
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 28..174

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsat.G17404.T1	Cucsat.G17404.T1	mRNA
Cucsat.G17404.T2	Cucsat.G17404.T2	mRNA
Cucsat.G17404.T7	Cucsat.G17404.T7	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045022	early endosome to late endosome transport
biological_process	GO:0006886	intracellular protein transport
cellular_component	GO:0010009	cytoplasmic side of endosome membrane
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005769	early endosome
cellular_component	GO:0012505	endomembrane system
molecular_function	GO:0003924	GTPase activity
molecular_function	GO:0005525	GTP binding