Cucsat.G1701 (gene) Cucumber (B10) v3

Overview


Name	Cucsat.G1701
Type	gene
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	50S ribosomal protein L17
Location	ctg1002: 535800 .. 540044 (-)
RNA-Seq Expression	Cucsat.G1701
Synteny	Cucsat.G1701

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TATATAAAAACCTATAATTAGGTTGAACACGTGGGTATTTATGGTTGGGCCTGACGCCGAATTTTGGAATTGGTCTACTTCGTTGCTTCAAAAACCCCGAAACGAAACCACAAGGGATCAGGGTTTTTCCATCTTCGAGCTCAGTCTTTGCTCTCTTTTCGCCATTAAGGATGACGAAGTTTAGGAAGCTTGGTCGACCTGCTGCACACCGGATGTCCATGCTCAGGTTCCTCATTTCTTACACCAACTATCCATTACGTTTTATTTCCCAATTTCTGAACGTCTTTTCTCTTCTTTTCGCAGAACAATGGTTTCTCAGTTGGTGAAGCACGAACGCATTGAGACTACTGTTGCTAAGGTATTCCTATCCCTCATTTCAACCCCCCCAATGACTTTCTGCTTATCATTCTGAGATCCCCATCTTCTACCTAACTGAATATGCCTTTTCCAAGTGATGAAATTTATCTGTATCCGAAATTTCCACTTTCAACTTTCCCTGTTTGGTTCATATTGTATCTTGGTTTATTCTGTGATCTTTGGATTTTTCATTAATCAATGAAATGGCTTCTATCCTAAAAAAAAAGAAAGAAAAAAATTGAAATTTTCCCTGTATCACAATGGTTACTATTTTTTTTTTAAAGGTAAGGTAATTTGTGGGTTTGTTACATTGTTCATGCGATATGTCTGGAGGCTTGATGTTTTGTATTGTCTAAATTGAGCTTACATTTTGATTTTTTTCCCCTATGATCCGAATTTAGAGTTTTGGTTAGTTAGATATATGTATGTTATCTCTTTTCCCTTGGTTTGCATCTTTTCTGTTCTTTCAAAATTTAACACCTAGCTTATTGTTGAAGGATATGTAGCATTCCTTGAGATCAAATAGATATTTTGGATTTCTAACATCTAAACTATTATGAATTTATGAGTTATGGCCATATTTTGAGCTTATTAATGCCATTTTCTTCCAACTTGTTTGAAGGCTAAAGAAGTTCGGCGACTTGCTGATAACATGGTTCAACTGGGAAAAGAGGTCCGTAGAAGTGTAACCAATTTGTTTTTCCTCTCAGTTTGTTGCTTTTGATTCTTTTTCTTCTTTTGGGGAGGGTGGGTTCTGCCTTCAAAATTTGATATTAGTTGGATACTAAGAATCACAGATCATTCAGTTTGGTTAACGTGCTTGACCGATACATATTAGACTCTCTGACACTTGTTAGACATGTATTAGAGGATTGGTAATGGTCGATATGTGTCAACATTAGTTGTACAAAGTTGATATTAATTCTTTGTTAAACATGTATTGAACACTTGTTAATTTAGCATACTTAATAGACACACAGTAAAATAGGACAAAAATTAATAAATTTTAAGTGTGAAATATATCAAACTTATTTTTAAGCATATAGGTCCACAAATTTATTGACTTTGAATTTTCAAGCTGGCAGAGACACTCGTAAAAAAGTGACATAAAAGGGAGTACATTTTAAATATGCGCGTACTTATCGTGTCTGTGTCCTAAGATTGTAAAATGTGGTGTATTTATGTGTGAGTTTCATGATGCCATACATTCTCATATGCATGTCCTATATCCATGCTTCTCAGGTGAGGTATTAAATTTGTAGATAAAGGACTAATTTGTAAATGAAAAGTAAACATGGTTCAAGATTTAGCTGATCTAAAATTAGTAACATGTAAAACTTTGCGGGAGAGAAGAAAGACAGGGCACGGAGATTAAGTTTGCATTAAATAATGCAGGAAGCTAATGATGGCATTGGGCACGGTCTTGATAAATATGCTTGCGGGTTTTGAGGGAAATAGGAGTGGCCTGCAACCAACATTGGAAGCTAAGCCAAATAAGAAATGAGGCGTGCATAATTAATAGGGTTTCTGGTATCCTGACCACTGAAATTCTGGCCAGGATGACGCCTTTATTTCAAATGTTTCTTAAGTCAGTATAAGTAATCCTCAAAAGATGGATACCAGAAATCAGCAATGGCACATCAATATGAGAAAGAAAGATCTTCAGAAGGAAGATTAGTTGGAACCATTTGAAAGTGAAAGAAGAGTGGTTTGAGGATCGCTGGATGTTATCGGGATTAAAGAGGAGTTTTAATTTCAGTGACACCCAATAATGTTTGAATTAAAATAATGGCTCTTCACCTAGGGGAATATAGTAGGTTTCGCTTCTGCTTACTCCTTTTTGCACTGAGGACATATTGTCATTTACTTCAAACTAGACATACTGGGATAGAAGGAAAACAATGAAATCAACCCACTAATAGAGTTGGTGTGATAGTTTAAACTCTATTACACCATAGACCGCGTGCAAAGATATTCTTACTATGTTTTGTTTCTGCAATGGGGCACTCTCAGAGGCACGAGAAGATCTGGTTCATCTGTTTTGGGAGTGCCAGTTTGCTCACCACCTTTGGAGTTGCTGTCTGCGAGCTTTTGGAGCTTGTTAGATTTAAATAAAGATGGTGGGGACCCGAATTTAGAAGGTGACTATGGTTCATAGGAGTTTTAGAGAGGTGGAGAGATTGGGCGGCAGTGTTTGGGAAGTAACTAATTTTGACTCCTCTTTGTGGGCGTTCGTCACCAAGTGTTTTTTAATGGTTCATGTTCTTTTGAACTGAAATCCTTGTAGTTTTTTTTTCTTGTTTTTTGTTGCCTTGTATATACTTTATATTTCTCCGTCAAAGCATGGTTTCTTATTAAGAAAAATAGGAACCTTTGCTTTGCTATTTTCTTTTTGATTCATAAAAGATAATATGCATGTTGTGACTTATTTTTTTTGTTTTCAATCTAGGGTACCCTTTCTGCTGCAAGGCGTGCTGCTGGTTTTGTAAGAGGAGATGCTGTCCTTCACAAACTATTCACAGAACTGGCTTATCGATACAAGTGAATCCCAAATCTACTAACCTCTATTTTATACTTTTATTTATTTATTATTAAATTGGATATATATCATGTTTAACAGAGATAGAACTGGTGGATATACAAGATTTCTGCGCACTCGTATACGTGTTGGTGATGCTGCACCAATGGCTTATATTGAGTAAGTGCTCATGATCGACAGCTGGGATAATTCTCCAGTGAACTGTAAAATATGAGTAATAGCTGATGTTTTTCTCTCATATTCAGTTATAAACAATTCTTGCTGTTGCAATTTTTAATTGATTATTTATGCTGTGGATACAGATTTTTAGTAGTAGGGAGGGAAATAAAGTCTAAAACACTAACATATTTGATGGCCTGCTCTCCATGAAAGTTGAATCAATTATATTAATTCGTTATTTCTCTATACTATTGACACAGATTTATTGATAGAGAAAATGAGCTCAGACAGTCAAAGCCTCCAAATCCTCCACCACCTCAGAGGCCTCCATTGGATCCATGGACTAGATCACGGCTTAGCAAGCAGTTCGCACCACCCAAAGAGATCAAATCCGACTCCGAAATCTAATACTTCATGTTTAACAATAAGGCTCCCCCCCAAGAAGTTCATCCCGCCACCACCCCCTCCAATTTGTTTTCCAAACTTCAGATGTAAACCAAACAAGTATAGACAATGCTTAAAGCTTTACCTCAAACAAAGAGTGTTTTTCAGCTCTCAAAGTTTACCATTTCTTGAAAATTCCATATACTGTTTCATCTATACAACATGACATCGGACCTTAAACTGACAAAGGCCGAGTCTCTCTCAAGTAGAATCTCAACTTATTCAAAAAATATATTATGTTTTAGGTAACTTTGGTTGAATATAGGTGAGGAAGAATGGTGATGGTGGATTGTGTATCTGTTGGAGTTGCAAATTTGGATCTTGCCCGTCTTGTCGACAGCCAGCAATTGCTTTGCAGCAGCAGCAAAATTTGGAGATAGGCTTCAAATATCCTGAACCAAGTATGAAACAGACTCCCTCCGAAATTTTCTATTACTATCATAGTACTTACTATTATCAGACACGTCATTAAGCAATAAGTTCATCTTTTTCATGATACTATAGTACTAAGAATTTTCTCCACCCAATCCATGTCTCCACGTGCATGCATTTTATGTCCATGTGTCAAATAGGTAGCCTGAAACTCACCTTGATTGCTTTGGAGGCAAGGAAAATTAGTGATTGTTGGTTCAGAGGAGAAAAGGAAAGGCGTCAGATTTGTTTTCCCTTTCCTTTTTTCTTTTATCAAAATTTGCTTCATTTATAATTCTTGAAAGTTAATGCATTTATCCCTATAATGTGTATTCTGGATATGGGAGTACTTTTAGTGAGGATTTCTTTAAAATTAATCCATTTGTCCCTTCAGAAACATATTGCATCTCTCCCTCTCCCATGTATTTTTTC

Coding sequence (CDS)

ATGACGAAGTTTAGGAAGCTTGGTCGACCTGCTGCACACCGGATGTCCATGCTCAGAACAATGGTTTCTCAGTTGGTGAAGCACGAACGCATTGAGACTACTGTTGCTAAGGCTAAAGAAGTTCGGCGACTTGCTGATAACATGGTTCAACTGGGAAAAGAGGGTACCCTTTCTGCTGCAAGGCGTGCTGCTGGTTTTGTAAGAGGAGATGCTGTCCTTCACAAACTATTCACAGAACTGGCTTATCGATACAAAGATAGAACTGGTGGATATACAAGATTTCTGCGCACTCGTATACGTGTTGGTGATGCTGCACCAATGGCTTATATTGAATTTATTGATAGAGAAAATGAGCTCAGACAGTCAAAGCCTCCAAATCCTCCACCACCTCAGAGGCCTCCATTGGATCCATGGACTAGATCACGGCTTAGCAAGCAGTTCGCACCACCCAAAGAGATCAAATCCGACTCCGAAATCTAA

Protein sequence

MTKFRKLGRPAAHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGTLSAARRAAGFVRGDAVLHKLFTELAYRYKDRTGGYTRFLRTRIRVGDAAPMAYIEFIDRENELRQSKPPNPPPPQRPPLDPWTRSRLSKQFAPPKEIKSDSEI

Homology

[Close]

BLAST of Cucsat.G1701 vs. ExPASy Swiss-Prot
Match: A0L5Z9 (50S ribosomal protein L17 OS=Magnetococcus marinus (strain ATCC BAA-1437 / JCM 17883 / MC-1) OX=156889 GN=rplQ PE=3 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 4.4e-26
Identity = 60/108 (55.56%), Postives = 79/108 (73.15%), Query Frame = 0


Query: 41  RKLGRPAAHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGTLSAARRAA 100
           R+L R  +HR +M++ M+  L KHERIETTV +AKE+R +A+ ++ LGK G L A R+A 
Sbjct: 8   RRLSRDTSHRQAMIKNMLVSLFKHERIETTVPRAKELRPVAEKVITLGKRGDLHARRQAL 67

Query: 101 GFVRGD-AVLHKLFTELAYRYKDRTGGYTRFLRTRIRVGDAAPMAYIE 148
             + GD  V+HKLFT+LA R KDR GGYTR L+TR R GD APM++IE
Sbjct: 68  SILNGDKEVVHKLFTDLAERNKDRQGGYTRILKTRFRYGDCAPMSFIE 115

[Close]

BLAST of Cucsat.G1701 vs. ExPASy Swiss-Prot
Match: Q749B4 (50S ribosomal protein L17 OS=Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA) OX=243231 GN=rplQ PE=3 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 9.9e-26
Identity = 62/125 (49.60%), Postives = 86/125 (68.80%), Query Frame = 0


Query: 41  RKLGRPAAHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGTLSAARRAA 100
           R+LGR  +HR++M R MV+ L  HERI TT AKAKE+R +A+ M+ LGK G L A R+AA
Sbjct: 8   RRLGRTTSHRIAMFRNMVTSLFAHERITTTDAKAKELRSIAEKMITLGKRGDLHAVRQAA 67

Query: 101 GFVRGDAVLHKLFTELAYRYKDRTGGYTRFLRTRIRVGDAAPMAYIE------ENELRQS 160
            ++R   V+ KLF+ +A RYK+R GGYTR ++  IR GD AP++ IE      E ++++S
Sbjct: 68  SYIRDKKVVTKLFSTIAPRYKERDGGYTRIIKLGIRPGDCAPLSVIELVEEQFEKKVKKS 127

[Close]

BLAST of Cucsat.G1701 vs. ExPASy Swiss-Prot
Match: B3E858 (50S ribosomal protein L17 OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) OX=398767 GN=rplQ PE=3 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 1.1e-24
Identity = 57/107 (53.27%), Postives = 79/107 (73.83%), Query Frame = 0


Query: 41  RKLGRPAAHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGTLSAARRAA 100
           R+LGR  +HR++M R MV+ L+ HERI TT AKAKE+R +A+ M+ LGK G L A R+AA
Sbjct: 8   RRLGRTTSHRIAMFRNMVTSLLNHERIVTTDAKAKEIRSVAEKMITLGKRGDLHAHRQAA 67

Query: 101 GFVRGDAVLHKLFTELAYRYKDRTGGYTRFLRTRIRVGDAAPMAYIE 148
            ++R  +V+ KLF+ +A RYKDR GGYTR ++   R+GDAA ++ IE
Sbjct: 68  AYIREKSVVTKLFSTIAPRYKDRAGGYTRIIKLGQRLGDAASLSVIE 114

[Close]

BLAST of Cucsat.G1701 vs. ExPASy Swiss-Prot
Match: Q8RE45 (50S ribosomal protein L17 OS=Fusobacterium nucleatum subsp. nucleatum (strain ATCC 25586 / DSM 15643 / BCRC 10681 / CIP 101130 / JCM 8532 / KCTC 2640 / LMG 13131 / VPI 4355) OX=190304 GN=rplQ PE=3 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 1.9e-24
Identity = 55/108 (50.93%), Postives = 78/108 (72.22%), Query Frame = 0


Query: 40  FRKLGRPAAHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGTLSAARRA 99
           +RKLGR A HR +ML+ M   L+K ERIETTV +AKE+R+ A+ M+  GK+ TL++ R A
Sbjct: 7   YRKLGRRADHRKAMLKNMTISLIKAERIETTVTRAKELRKFAERMITFGKKNTLASRRNA 66

Query: 100 AGFVRGDAVLHKLFTELAYRYKDRTGGYTRFLRTRIRVGDAAPMAYIE 148
             F+R + V+ K+F E+A +Y +R GGYTR ++T +R GD+A MA IE
Sbjct: 67  FAFLRDEEVVAKIFNEIAPKYAERNGGYTRIIKTSVRKGDSAEMAIIE 114

[Close]

BLAST of Cucsat.G1701 vs. ExPASy Swiss-Prot
Match: C6E4M9 (50S ribosomal protein L17 OS=Geobacter sp. (strain M21) OX=443144 GN=rplQ PE=3 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 3.2e-24
Identity = 59/122 (48.36%), Postives = 84/122 (68.85%), Query Frame = 0


Query: 41  RKLGRPAAHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGTLSAARRAA 100
           R+LGR  +HR++M R MV+  ++HE+I TT AKAKE+R +A+ M+ LGK G L A R+AA
Sbjct: 8   RRLGRTTSHRIAMFRNMVTSFLQHEKITTTDAKAKELRSIAEKMITLGKRGDLHATRQAA 67

Query: 101 GFVRGDAVLHKLFTELAYRYKDRTGGYTRFLRTRIRVGDAAPMAYIE--ENELRQSKPPN 160
            ++R   V+ KLFTE+A RY +R GGYTR ++  IR GD AP++ +E  E E++  K   
Sbjct: 68  AYIRDKKVVTKLFTEIAPRYTERPGGYTRIIKLGIRPGDNAPVSVLELVEAEMKPKKAAA 127

[Close]

BLAST of Cucsat.G1701 vs. NCBI nr
Match: XP_004148646.1 (uncharacterized protein LOC101221792 [Cucumis sativus] >KGN48368.1 hypothetical protein Csa_003833 [Cucumis sativus])

HSP 1 Score: 297 bits (761), Expect = 1.08e-100
Identity = 155/159 (97.48%), Postives = 155/159 (97.48%), Query Frame = 0


Query: 37  MTKFRKLGRPAAHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGTLSAA 96
           MTKFRKLGRPAAHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGTLSAA
Sbjct: 1   MTKFRKLGRPAAHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGTLSAA 60

Query: 97  RRAAGFVRGDAVLHKLFTELAYRYKDRTGGYTRFLRTRIRVGDAAPMAYIE----ENELR 156
           RRAAGFVRGDAVLHKLFTELAYRYKDRTGGYTRFLRTRIRVGDAAPMAYIE    ENELR
Sbjct: 61  RRAAGFVRGDAVLHKLFTELAYRYKDRTGGYTRFLRTRIRVGDAAPMAYIEFIDRENELR 120

Query: 157 QSKPPNPPPPQRPPLDPWTRSRLSKQFAPPKEIKSDSEI 191
           QSKPPNPPPPQRPPLDPWTRSRLSKQFAPPKEIKSDSEI
Sbjct: 121 QSKPPNPPPPQRPPLDPWTRSRLSKQFAPPKEIKSDSEI 159

[Close]

BLAST of Cucsat.G1701 vs. NCBI nr
Match: XP_022979157.1 (uncharacterized protein LOC111478877 [Cucurbita maxima])

HSP 1 Score: 293 bits (749), Expect = 1.45e-98
Identity = 153/174 (87.93%), Postives = 158/174 (90.80%), Query Frame = 0


Query: 22  FPSSSSVFALFSPLRMTKFRKLGRPAAHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLA 81
           F SS+SVFALF PL MTKFRKLGRPAAHRMSMLRTMVSQLVKHERIETTVAKAKE+RRLA
Sbjct: 6   FSSSNSVFALFPPLTMTKFRKLGRPAAHRMSMLRTMVSQLVKHERIETTVAKAKEIRRLA 65

Query: 82  DNMVQLGKEGTLSAARRAAGFVRGDAVLHKLFTELAYRYKDRTGGYTRFLRTRIRVGDAA 141
           DNMVQ GKEG+L AAR AA FVRGD VLHKLFTELAYRYKDR GGYTR LRTRIRVGDAA
Sbjct: 66  DNMVQFGKEGSLCAARHAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIRVGDAA 125

Query: 142 PMAYIE----ENELRQSKPPNPPPPQRPPLDPWTRSRLSKQFAPPKEIKSDSEI 191
           PMAYIE    ENELRQSKPPNP PPQ+ P+DPWTRSRLSKQFAPPKEIKSDSEI
Sbjct: 126 PMAYIEFIDRENELRQSKPPNPQPPQKAPMDPWTRSRLSKQFAPPKEIKSDSEI 179

[Close]

BLAST of Cucsat.G1701 vs. NCBI nr
Match: XP_008441029.1 (PREDICTED: 50S ribosomal protein L17 [Cucumis melo] >KAA0025538.1 50S ribosomal protein L17 [Cucumis melo var. makuwa] >TYK25697.1 50S ribosomal protein L17 [Cucumis melo var. makuwa])

HSP 1 Score: 290 bits (743), Expect = 5.97e-98
Identity = 151/159 (94.97%), Postives = 152/159 (95.60%), Query Frame = 0


Query: 37  MTKFRKLGRPAAHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGTLSAA 96
           MTKFRKLGRPAAHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGTLSAA
Sbjct: 1   MTKFRKLGRPAAHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGTLSAA 60

Query: 97  RRAAGFVRGDAVLHKLFTELAYRYKDRTGGYTRFLRTRIRVGDAAPMAYIE----ENELR 156
           RRAA FVRGDA+LHKLFTELAYRYKDR GGYTRFLRTRIRVGDAAPMAYIE    ENELR
Sbjct: 61  RRAAAFVRGDAILHKLFTELAYRYKDRAGGYTRFLRTRIRVGDAAPMAYIEFVDRENELR 120

Query: 157 QSKPPNPPPPQRPPLDPWTRSRLSKQFAPPKEIKSDSEI 191
           QSKPPNPPPPQRPPLDPWTRSRLSKQ APPKEIKSDSEI
Sbjct: 121 QSKPPNPPPPQRPPLDPWTRSRLSKQLAPPKEIKSDSEI 159

[Close]

BLAST of Cucsat.G1701 vs. NCBI nr
Match: XP_038880926.1 (50S ribosomal protein L17 [Benincasa hispida])

HSP 1 Score: 279 bits (713), Expect = 2.22e-93
Identity = 146/159 (91.82%), Postives = 147/159 (92.45%), Query Frame = 0


Query: 37  MTKFRKLGRPAAHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGTLSAA 96
           MTKFRKLGR   HRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQ GKEGTL AA
Sbjct: 1   MTKFRKLGRHTKHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQFGKEGTLCAA 60

Query: 97  RRAAGFVRGDAVLHKLFTELAYRYKDRTGGYTRFLRTRIRVGDAAPMAYIE----ENELR 156
           RRAA FVRGDAVLHKLFTE+AYRYKDR GGYTRFLRTRIRVGDAAPMAYIE    ENELR
Sbjct: 61  RRAAAFVRGDAVLHKLFTEMAYRYKDRAGGYTRFLRTRIRVGDAAPMAYIEFIDRENELR 120

Query: 157 QSKPPNPPPPQRPPLDPWTRSRLSKQFAPPKEIKSDSEI 191
           QSKPPNPPPPQR PLDPWTRSRLSKQFAPPKEIKSDSEI
Sbjct: 121 QSKPPNPPPPQRAPLDPWTRSRLSKQFAPPKEIKSDSEI 159

[Close]

BLAST of Cucsat.G1701 vs. NCBI nr
Match: XP_022132421.1 (uncharacterized protein LOC111005280 [Momordica charantia])

HSP 1 Score: 267 bits (682), Expect = 1.17e-88
Identity = 139/159 (87.42%), Postives = 143/159 (89.94%), Query Frame = 0


Query: 37  MTKFRKLGRPAAHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGTLSAA 96
           MTKFRKLGRP  HRMSMLRTMVSQLVKHERIETTVAKAKE+RRLADNMVQ GKE +L AA
Sbjct: 1   MTKFRKLGRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEIRRLADNMVQFGKENSLCAA 60

Query: 97  RRAAGFVRGDAVLHKLFTELAYRYKDRTGGYTRFLRTRIRVGDAAPMAYIE----ENELR 156
           RRAA FVRGD VLHKLFTELAYRYKDR GGYTR LRTRIRVGDAAPMAYIE    ENELR
Sbjct: 61  RRAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIRVGDAAPMAYIEFIDRENELR 120

Query: 157 QSKPPNPPPPQRPPLDPWTRSRLSKQFAPPKEIKSDSEI 191
           QSKPPNP P Q+ PLDPWTRSRLSKQFAPPKEIKSDSE+
Sbjct: 121 QSKPPNPQPQQKAPLDPWTRSRLSKQFAPPKEIKSDSEV 159

[Close]

BLAST of Cucsat.G1701 vs. ExPASy TrEMBL
Match: A0A0A0KFP7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G483480 PE=3 SV=1)

HSP 1 Score: 297 bits (761), Expect = 5.22e-101
Identity = 155/159 (97.48%), Postives = 155/159 (97.48%), Query Frame = 0


Query: 37  MTKFRKLGRPAAHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGTLSAA 96
           MTKFRKLGRPAAHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGTLSAA
Sbjct: 1   MTKFRKLGRPAAHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGTLSAA 60

Query: 97  RRAAGFVRGDAVLHKLFTELAYRYKDRTGGYTRFLRTRIRVGDAAPMAYIE----ENELR 156
           RRAAGFVRGDAVLHKLFTELAYRYKDRTGGYTRFLRTRIRVGDAAPMAYIE    ENELR
Sbjct: 61  RRAAGFVRGDAVLHKLFTELAYRYKDRTGGYTRFLRTRIRVGDAAPMAYIEFIDRENELR 120

Query: 157 QSKPPNPPPPQRPPLDPWTRSRLSKQFAPPKEIKSDSEI 191
           QSKPPNPPPPQRPPLDPWTRSRLSKQFAPPKEIKSDSEI
Sbjct: 121 QSKPPNPPPPQRPPLDPWTRSRLSKQFAPPKEIKSDSEI 159

[Close]

BLAST of Cucsat.G1701 vs. ExPASy TrEMBL
Match: A0A6J1IN09 (uncharacterized protein LOC111478877 OS=Cucurbita maxima OX=3661 GN=LOC111478877 PE=3 SV=1)

HSP 1 Score: 293 bits (749), Expect = 7.01e-99
Identity = 153/174 (87.93%), Postives = 158/174 (90.80%), Query Frame = 0


Query: 22  FPSSSSVFALFSPLRMTKFRKLGRPAAHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLA 81
           F SS+SVFALF PL MTKFRKLGRPAAHRMSMLRTMVSQLVKHERIETTVAKAKE+RRLA
Sbjct: 6   FSSSNSVFALFPPLTMTKFRKLGRPAAHRMSMLRTMVSQLVKHERIETTVAKAKEIRRLA 65

Query: 82  DNMVQLGKEGTLSAARRAAGFVRGDAVLHKLFTELAYRYKDRTGGYTRFLRTRIRVGDAA 141
           DNMVQ GKEG+L AAR AA FVRGD VLHKLFTELAYRYKDR GGYTR LRTRIRVGDAA
Sbjct: 66  DNMVQFGKEGSLCAARHAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIRVGDAA 125

Query: 142 PMAYIE----ENELRQSKPPNPPPPQRPPLDPWTRSRLSKQFAPPKEIKSDSEI 191
           PMAYIE    ENELRQSKPPNP PPQ+ P+DPWTRSRLSKQFAPPKEIKSDSEI
Sbjct: 126 PMAYIEFIDRENELRQSKPPNPQPPQKAPMDPWTRSRLSKQFAPPKEIKSDSEI 179

[Close]

BLAST of Cucsat.G1701 vs. ExPASy TrEMBL
Match: A0A5D3DPW3 (50S ribosomal protein L17 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1230G00280 PE=3 SV=1)

HSP 1 Score: 290 bits (743), Expect = 2.89e-98
Identity = 151/159 (94.97%), Postives = 152/159 (95.60%), Query Frame = 0


Query: 37  MTKFRKLGRPAAHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGTLSAA 96
           MTKFRKLGRPAAHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGTLSAA
Sbjct: 1   MTKFRKLGRPAAHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGTLSAA 60

Query: 97  RRAAGFVRGDAVLHKLFTELAYRYKDRTGGYTRFLRTRIRVGDAAPMAYIE----ENELR 156
           RRAA FVRGDA+LHKLFTELAYRYKDR GGYTRFLRTRIRVGDAAPMAYIE    ENELR
Sbjct: 61  RRAAAFVRGDAILHKLFTELAYRYKDRAGGYTRFLRTRIRVGDAAPMAYIEFVDRENELR 120

Query: 157 QSKPPNPPPPQRPPLDPWTRSRLSKQFAPPKEIKSDSEI 191
           QSKPPNPPPPQRPPLDPWTRSRLSKQ APPKEIKSDSEI
Sbjct: 121 QSKPPNPPPPQRPPLDPWTRSRLSKQLAPPKEIKSDSEI 159

[Close]

BLAST of Cucsat.G1701 vs. ExPASy TrEMBL
Match: A0A1S3B2I7 (50S ribosomal protein L17 OS=Cucumis melo OX=3656 GN=LOC103485266 PE=3 SV=1)

HSP 1 Score: 290 bits (743), Expect = 2.89e-98
Identity = 151/159 (94.97%), Postives = 152/159 (95.60%), Query Frame = 0


Query: 37  MTKFRKLGRPAAHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGTLSAA 96
           MTKFRKLGRPAAHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGTLSAA
Sbjct: 1   MTKFRKLGRPAAHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGTLSAA 60

Query: 97  RRAAGFVRGDAVLHKLFTELAYRYKDRTGGYTRFLRTRIRVGDAAPMAYIE----ENELR 156
           RRAA FVRGDA+LHKLFTELAYRYKDR GGYTRFLRTRIRVGDAAPMAYIE    ENELR
Sbjct: 61  RRAAAFVRGDAILHKLFTELAYRYKDRAGGYTRFLRTRIRVGDAAPMAYIEFVDRENELR 120

Query: 157 QSKPPNPPPPQRPPLDPWTRSRLSKQFAPPKEIKSDSEI 191
           QSKPPNPPPPQRPPLDPWTRSRLSKQ APPKEIKSDSEI
Sbjct: 121 QSKPPNPPPPQRPPLDPWTRSRLSKQLAPPKEIKSDSEI 159

[Close]

BLAST of Cucsat.G1701 vs. ExPASy TrEMBL
Match: A0A6J1BS83 (uncharacterized protein LOC111005280 OS=Momordica charantia OX=3673 GN=LOC111005280 PE=3 SV=1)

HSP 1 Score: 267 bits (682), Expect = 5.68e-89
Identity = 139/159 (87.42%), Postives = 143/159 (89.94%), Query Frame = 0


Query: 37  MTKFRKLGRPAAHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGTLSAA 96
           MTKFRKLGRP  HRMSMLRTMVSQLVKHERIETTVAKAKE+RRLADNMVQ GKE +L AA
Sbjct: 1   MTKFRKLGRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEIRRLADNMVQFGKENSLCAA 60

Query: 97  RRAAGFVRGDAVLHKLFTELAYRYKDRTGGYTRFLRTRIRVGDAAPMAYIE----ENELR 156
           RRAA FVRGD VLHKLFTELAYRYKDR GGYTR LRTRIRVGDAAPMAYIE    ENELR
Sbjct: 61  RRAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIRVGDAAPMAYIEFIDRENELR 120

Query: 157 QSKPPNPPPPQRPPLDPWTRSRLSKQFAPPKEIKSDSEI 191
           QSKPPNP P Q+ PLDPWTRSRLSKQFAPPKEIKSDSE+
Sbjct: 121 QSKPPNPQPQQKAPLDPWTRSRLSKQFAPPKEIKSDSEV 159

[Close]

BLAST of Cucsat.G1701 vs. TAIR 10
Match: AT5G09770.1 (Ribosomal protein L17 family protein )

HSP 1 Score: 255.4 bits (651), Expect = 3.7e-68
Identity = 136/160 (85.00%), Postives = 143/160 (89.38%), Query Frame = 0


Query: 37  MTKFRKLGRPAAHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGTLSAA 96
           MTKFRKLGRPA HRMSMLRTMVSQLVKHERIETTV KAKEVRRLADNM+QLGKEG+LSAA
Sbjct: 1   MTKFRKLGRPAGHRMSMLRTMVSQLVKHERIETTVTKAKEVRRLADNMIQLGKEGSLSAA 60

Query: 97  RRAAGFVRGDAVLHKLFTELAYRYKDRTGGYTRFLRTRIRVGDAAPMAYIE----ENELR 156
           RRAAGFVRGD VLHK+FTELA+RYKDR GGYTR LRTRIRVGDAAPMAYIE    ENELR
Sbjct: 61  RRAAGFVRGDDVLHKIFTELAHRYKDRAGGYTRLLRTRIRVGDAAPMAYIEFIDRENELR 120

Query: 157 QSKPPNPPPPQRPPLDPWTRSRLSKQFAPPKEIK-SDSEI 192
           QSKP  P PPQR PLDPW RSRL++QFAPPKE K  DSE+
Sbjct: 121 QSKPATPQPPQRVPLDPWERSRLTRQFAPPKEEKIPDSEL 160

[Close]

BLAST of Cucsat.G1701 vs. TAIR 10
Match: AT5G64650.1 (Ribosomal protein L17 family protein )

HSP 1 Score: 250.4 bits (638), Expect = 1.2e-66
Identity = 132/160 (82.50%), Postives = 143/160 (89.38%), Query Frame = 0


Query: 37  MTKFRKLGRPAAHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGTLSAA 96
           MTKFRKLGRPA HRMSMLRTMVSQLV+HERIETTV KAKEVRRLADNM+QLGKEG+L+AA
Sbjct: 1   MTKFRKLGRPAGHRMSMLRTMVSQLVQHERIETTVTKAKEVRRLADNMIQLGKEGSLAAA 60

Query: 97  RRAAGFVRGDAVLHKLFTELAYRYKDRTGGYTRFLRTRIRVGDAAPMAYIE----ENELR 156
           RRAAGFVRGD VLHK+FTELA+RYKDR GGYTR LRTRIRVGDAAPMAYIE    ENELR
Sbjct: 61  RRAAGFVRGDDVLHKIFTELAHRYKDRAGGYTRMLRTRIRVGDAAPMAYIEFIDRENELR 120

Query: 157 QSKPPNPPPPQRPPLDPWTRSRLSKQFAPPKEIK-SDSEI 192
           QSKP  P PP R PLDPW RSRL++Q+APPKE K SDS++
Sbjct: 121 QSKPATPQPPPRVPLDPWARSRLTRQYAPPKEEKTSDSDL 160

[Close]

BLAST of Cucsat.G1701 vs. TAIR 10
Match: AT3G54210.1 (Ribosomal protein L17 family protein )

HSP 1 Score: 104.0 bits (258), Expect = 1.4e-22
Identity = 54/130 (41.54%), Postives = 80/130 (61.54%), Query Frame = 0


Query: 18  GIRVFPSSSSVFALFSPLRMTKFRKLGRPAAHRMSMLRTMVSQLVKHERIETTVAKAKEV 77
           G ++      ++A+    R+    KL RP   R ++LR + +QL+KH RI+TT A+A  +
Sbjct: 83  GFKIVDGGGRIYAMRHGRRVP---KLNRPPDQRKALLRGLTTQLLKHGRIKTTRARASAM 142

Query: 78  RRLADNMVQLGKEGTLSAARRAAGFVRGDAVLHKLFTELAYRYKDRTGGYTRFLRTRIRV 137
           R+  D M+ L K+G+L   R+A G++    ++H LF E+  RY +R GGYTR +RT  R 
Sbjct: 143 RKFVDKMITLAKDGSLHKRRQALGYIYEKQIVHALFAEVPDRYGERNGGYTRIIRTLPRR 202

Query: 138 GDAAPMAYIE 148
           GD APMAYIE
Sbjct: 203 GDNAPMAYIE 209

The following BLAST results are available for this feature:

BLAST of Cucsat.G1701 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A0L5Z9	4.4e-26	55.56	50S ribosomal protein L17 OS=Magnetococcus marinus (strain ATCC BAA-1437 / JCM 1...	[more]
Q749B4	9.9e-26	49.60	50S ribosomal protein L17 OS=Geobacter sulfurreducens (strain ATCC 51573 / DSM 1...	[more]
B3E858	1.1e-24	53.27	50S ribosomal protein L17 OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278...	[more]
Q8RE45	1.9e-24	50.93	50S ribosomal protein L17 OS=Fusobacterium nucleatum subsp. nucleatum (strain AT...	[more]
C6E4M9	3.2e-24	48.36	50S ribosomal protein L17 OS=Geobacter sp. (strain M21) OX=443144 GN=rplQ PE=3 S...	[more]

BLAST of Cucsat.G1701 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004148646.1	1.08e-100	97.48	uncharacterized protein LOC101221792 [Cucumis sativus] >KGN48368.1 hypothetical ...	[more]
XP_022979157.1	1.45e-98	87.93	uncharacterized protein LOC111478877 [Cucurbita maxima]	[more]
XP_008441029.1	5.97e-98	94.97	PREDICTED: 50S ribosomal protein L17 [Cucumis melo] >KAA0025538.1 50S ribosomal ...	[more]
XP_038880926.1	2.22e-93	91.82	50S ribosomal protein L17 [Benincasa hispida]	[more]
XP_022132421.1	1.17e-88	87.42	uncharacterized protein LOC111005280 [Momordica charantia]	[more]

BLAST of Cucsat.G1701 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KFP7	5.22e-101	97.48	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G483480 PE=3 SV=1	[more]
A0A6J1IN09	7.01e-99	87.93	uncharacterized protein LOC111478877 OS=Cucurbita maxima OX=3661 GN=LOC111478877...	[more]
A0A5D3DPW3	2.89e-98	94.97	50S ribosomal protein L17 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A1S3B2I7	2.89e-98	94.97	50S ribosomal protein L17 OS=Cucumis melo OX=3656 GN=LOC103485266 PE=3 SV=1	[more]
A0A6J1BS83	5.68e-89	87.42	uncharacterized protein LOC111005280 OS=Momordica charantia OX=3673 GN=LOC111005...	[more]

BLAST of Cucsat.G1701 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G09770.1	3.7e-68	85.00	Ribosomal protein L17 family protein	[more]
AT5G64650.1	1.2e-66	82.50	Ribosomal protein L17 family protein	[more]
AT3G54210.1	1.4e-22	41.54	Ribosomal protein L17 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000456	Ribosomal protein L17	PFAM	PF01196	Ribosomal_L17	coord: 38..95 e-value: 3.2E-14 score: 53.7
IPR000456	Ribosomal protein L17	PANTHER	PTHR14413	RIBOSOMAL PROTEIN L17	coord: 36..138
IPR036373	Ribosomal protein L17 superfamily	GENE3D	3.90.1030.10	Ribosomal protein L17	coord: 20..95 e-value: 1.7E-17 score: 65.6
IPR036373	Ribosomal protein L17 superfamily	SUPERFAMILY	64263	Prokaryotic ribosomal protein L17	coord: 37..98
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 104..118
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 100..141
None	No IPR available	PANTHER	PTHR14413:SF22	BNAA09G06940D PROTEIN	coord: 36..138

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsat.G1701.T1	Cucsat.G1701.T1	mRNA
Cucsat.G1701.T4	Cucsat.G1701.T4	mRNA
Cucsat.G1701.T2	Cucsat.G1701.T2	mRNA
Cucsat.G1701.T5	Cucsat.G1701.T5	mRNA
Cucsat.G1701.T3	Cucsat.G1701.T3	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0015934	large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome