Cucsat.G16932 (gene) Cucumber (B10) v3

Overview
NameCucsat.G16932
Typegene
OrganismCucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
DescriptionUnknown protein
Locationctg24: 584632 .. 585384 (-)
RNA-Seq ExpressionCucsat.G16932
SyntenyCucsat.G16932
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GATTACATCTTCTTGGTTACAAATCATTAAGCTCTCTCTCTCTCATCTTTCTGCTTCTGAAATGGCTTCCAACAGGGTTTCGATGATTTTGTATGTGCTGTTCTTCATTATTATGCTTTCAATTTCATCTAATAATAATTATAATGCTTCTGCAAGAAAATTTCTTGACGTTAATTTCCCTCTTCTTGACGATGCCTTCGACCTTCAAATGGGTGCATCTTCATTATTTTGTAAGTCGTCTCTCACCTTCTTTCTGCTTCTTTCACTTCTTTTCAAAAACTAAGTTTATAAATGAGAAATTTTTAAATATAGCATAGTAAAATTTAGATTCTATTCATGATGATAGACATTAGAATCGAAAAGTTTGACCATGTTTTTTTTTTTTGTATATTTCAATAATTTTTCTTTTCAATACTTGGTTTTGCTTAATATTATTACTTTTTTATCTTCTAATTCTTACAAATGCTTTCAAAATAATCCAGACCAAGTTTTGCCTAATAGTTCGAGTAAAATAAAGAAAAAGAAGCATAATTATTTAAAGAAAACACGAAACTAAAAAATGAAATCATGAACAGACGAGATGTTAATATAGATTGTTTATGATTTTATTATTATTTGTAATCATTGAATGTATAATTTGATTTACTTTTATGGTTTTGTTTTTCAGATAAATTGGAAGGAGAGCTACAAAAGAGATTCGAGGATTTATTAAAAACAACCACGGATAATGATATTCCTCGTGGTGGAAACTAT

Coding sequence (CDS)

ATTACATCTTCTTGGTTACAAATCATTAAGCTCTCTCTCTCTCATCTTTCTGCTTCTGAAATGGCTTCCAACAGGGTTTCGATGATTTTGTATGTGCTGTTCTTCATTATTATGCTTTCAATTTCATCTAATAATAATTATAATGCTTCTGCAAGAAAATTTCTTGACGTTAATTTCCCTCTTCTTGACGATGCCTTCGACCTTCAAATGGGTGCATCTTCATTATTTTATAAATTGGAAGGAGAGCTACAAAAGAGATTCGAGGATTTATTAAAAACAACCACGGATAATGATATTCCTCGTGGTGGAAACTAT

Protein sequence

ITSSWLQIIKLSLSHLSASEMASNRVSMILYVLFFIIMLSISSNNNYNASARKFLDVNFPLLDDAFDLQMGASSLFYKLEGELQKRFEDLLKTTTDNDIPRGGNY
Homology
[Close]
BLAST of Cucsat.G16932 vs. NCBI nr
Match: KGN53135.1 (hypothetical protein Csa_014652 [Cucumis sativus])

HSP 1 Score: 168 bits (426), Expect = 3.60e-52
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 0 

Query: 21  MASNRVSMILYVLFFIIMLSISSNNNYNASARKFLDVNFPLLDDAFDLQMGASSLFYKLE 80
           MASNRVSMILYVLFFIIMLSISSNNNYNASARKFLDVNFPLLDDAFDLQMGASSLFYKLE
Sbjct: 1   MASNRVSMILYVLFFIIMLSISSNNNYNASARKFLDVNFPLLDDAFDLQMGASSLFYKLE 60

Query: 81  GELQKRFEDLLKTTTDNDIPRGGNY 105
           GELQKRFEDLLKTTTDNDIPRGGNY
Sbjct: 61  GELQKRFEDLLKTTTDNDIPRGGNY 85

[Close]
BLAST of Cucsat.G16932 vs. NCBI nr
Match: KGN53134.1 (hypothetical protein Csa_015383 [Cucumis sativus])

HSP 1 Score: 138 bits (348), Expect = 2.75e-40
Identity = 72/85 (84.71%), Postives = 77/85 (90.59%), Query Frame = 0 

Query: 21  MASNRVSMILYVLFFIIMLSISSNNNYNASARKFLDVNFPLLDDAFDLQMGASSLFYKLE 80
           MAS RVSMIL V+FFIIML ISSNNNYN SARKFLDVN PL DDAF+LQM ASSLFYK++
Sbjct: 1   MASKRVSMILNVVFFIIMLLISSNNNYNVSARKFLDVNTPL-DDAFNLQMDASSLFYKMK 60

Query: 81  GELQKRFEDLLKTTTDNDIPRGGNY 105
           GELQ+RFEDLLK TTDNDIPRGGNY
Sbjct: 61  GELQRRFEDLLKATTDNDIPRGGNY 84

[Close]
BLAST of Cucsat.G16932 vs. NCBI nr
Match: XP_031739611.1 (uncharacterized protein LOC116403190 isoform X2 [Cucumis sativus])

HSP 1 Score: 95.5 bits (236), Expect = 5.78e-23
Identity = 45/54 (83.33%), Postives = 50/54 (92.59%), Query Frame = 0 

Query: 52  RKFLDVNFPLLDDAFDLQMGASSLFYKLEGELQKRFEDLLKTTTDNDIPRGGNY 105
           +KFLDVN PL DDAF+LQM ASSLFYK++GELQ+RFEDLLK TTDNDIPRGGNY
Sbjct: 54  KKFLDVNTPL-DDAFNLQMDASSLFYKMKGELQRRFEDLLKATTDNDIPRGGNY 106

[Close]
BLAST of Cucsat.G16932 vs. NCBI nr
Match: KAG6600181.1 (hypothetical protein SDJN03_05414, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 91.7 bits (226), Expect = 9.28e-22
Identity = 47/85 (55.29%), Postives = 63/85 (74.12%), Query Frame = 0 

Query: 21  MASNRVSMILYVLFFIIMLSISSNNNYNASARKFLDVNFPLLDDAFDLQMGASSLFYKLE 80
           MAS  VS+    +FFI ML ++SN     S+RK LD N P+ +D F++++GASS FY+LE
Sbjct: 1   MASTNVSVSWRAVFFIAMLLMASN----VSSRKLLDANIPV-EDGFNVEIGASSFFYELE 60

Query: 81  GELQKRFEDLLKTTTDNDIPRGGNY 105
           GEL+KRFE  +K+ TDND+PRGGNY
Sbjct: 61  GELEKRFESFIKSHTDNDVPRGGNY 80

[Close]
BLAST of Cucsat.G16932 vs. ExPASy TrEMBL
Match: A0A0A0KU24 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G022220 PE=4 SV=1)

HSP 1 Score: 168 bits (426), Expect = 1.74e-52
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 0 

Query: 21  MASNRVSMILYVLFFIIMLSISSNNNYNASARKFLDVNFPLLDDAFDLQMGASSLFYKLE 80
           MASNRVSMILYVLFFIIMLSISSNNNYNASARKFLDVNFPLLDDAFDLQMGASSLFYKLE
Sbjct: 1   MASNRVSMILYVLFFIIMLSISSNNNYNASARKFLDVNFPLLDDAFDLQMGASSLFYKLE 60

Query: 81  GELQKRFEDLLKTTTDNDIPRGGNY 105
           GELQKRFEDLLKTTTDNDIPRGGNY
Sbjct: 61  GELQKRFEDLLKTTTDNDIPRGGNY 85

[Close]
BLAST of Cucsat.G16932 vs. ExPASy TrEMBL
Match: A0A0A0KW84 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G022210 PE=4 SV=1)

HSP 1 Score: 138 bits (348), Expect = 1.33e-40
Identity = 72/85 (84.71%), Postives = 77/85 (90.59%), Query Frame = 0 

Query: 21  MASNRVSMILYVLFFIIMLSISSNNNYNASARKFLDVNFPLLDDAFDLQMGASSLFYKLE 80
           MAS RVSMIL V+FFIIML ISSNNNYN SARKFLDVN PL DDAF+LQM ASSLFYK++
Sbjct: 1   MASKRVSMILNVVFFIIMLLISSNNNYNVSARKFLDVNTPL-DDAFNLQMDASSLFYKMK 60

Query: 81  GELQKRFEDLLKTTTDNDIPRGGNY 105
           GELQ+RFEDLLK TTDNDIPRGGNY
Sbjct: 61  GELQRRFEDLLKATTDNDIPRGGNY 84

The following BLAST results are available for this feature:
BLAST of Cucsat.G16932 vs.
Match NameE-valueIdentityDescription
BLAST of Cucsat.G16932 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN53135.13.60e-52100.00hypothetical protein Csa_014652 [Cucumis sativus][more]
KGN53134.12.75e-4084.71hypothetical protein Csa_015383 [Cucumis sativus][more]
XP_031739611.15.78e-2383.33uncharacterized protein LOC116403190 isoform X2 [Cucumis sativus][more]
KAG6600181.19.28e-2255.29hypothetical protein SDJN03_05414, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Cucsat.G16932 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KU241.74e-52100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G022220 PE=4 SV=1[more]
A0A0A0KW841.33e-4084.71Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G022210 PE=4 SV=1[more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsat.G16932.T1Cucsat.G16932.T1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane