Cucsat.G16835 (gene) Cucumber (B10) v3

Overview


Name	Cucsat.G16835
Type	gene
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	Unknown protein
Location	ctg24: 1837257 .. 1839420 (-)
RNA-Seq Expression	Cucsat.G16835
Synteny	Cucsat.G16835

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GTCACGTGGCACACTCGCGAACAACTACGGGAACAGAGTGAAGAAGCAAAGATAATTTCGCGGTGGCCGTTAAAAGAGAGAGATAATAGAGCAAAATGGCAGCGACGGCGACGGCGACCGGAGTATTGAAGATCGGCGTTCCGGCACCAGCTCCAGCTCCAGCTCCGCCTCCGTTAAAGGCAAAATCAGGAAGGCATCCAACGAATTTTGCAAGCCTCACAATGCGCTATCCAAATTACTTTCTCAATACGCGGATGAAATTTCCTGCCGTTCGAGCACTTGGACAAGGAGGGAATCCGAGCGGCGACGACGACAACGACGCCGGCGGTTTCATCAATCAGGTGTTTGTTTTCCCTAATTGCCTTCTATCTCTAAGTATATAAGAGCATTAAACATATGCTTAGCAGATTGCTGATTCAACATAGTAATTCGATGCCTAATTAGCTGAATTTAGGCTGAATGAAAGAAAAATAGATGGAACTATTCAGTTTACCACATTTTAGCAGTATTTTTACTGATTTCTGGCTAGATTCTATAAGTTTCATTGATTGAATTGGACTGGGAAATCTGGAATTTTAGTAAATTCTTGTCAGGTTAGCTATTCTGTCTTTCGATTATCAAACCTGGAAAAAGAACACTTGAACGCACAAAAAACTAAAGAACACTAAAATATGTTGTATTGCGATAAGAAAAGTAACAACATAAACACAACCTAGTCTTTGCTAATCTCTTATAAATTCTCCAAAGAAAATCCGCAAAATTTCACTCTCTCCTCGTAACCTTACACCCTCTATTTATAGATAAATGCCTAACAAATCAAATTTACTAACTATTTACTAAGATGTCTCTTTTATCAACCATACTGATATTCTACTAATGATCCTACCATTTTCATAACTAGAGATCTTTGGGAGCTCCTTCTTGCATTGATTCAAATTCTTCTTTGATGATGAGTGCATGTTGAGCAACCAGTGTGTAGACCATTTATTATTGATGTTGTGCCAAAATTGCTTTCAGGGCAATGATTTCTTCTACGGCACAATAAATCTTTTTGAAATTCGATTAACAAGGTTTCTATTTCTCTTACCCAATAAATCTCTTTTAAGATATGCTTGATATTGACGGGAAAGCCTAAACTTAAACATAATCAATATAGAATTGTATAGAAAAATGAAAAGAAAGTAGAGTTTCAAAACATTATATTCTATGCAATAAAATTAGTGAAGATGGCCTGGAATTAGAAAACTCAAACATAGACTTACCGTTTTAATTCCAAGATATACAAGTCCAACATGTTCGTCAGCCTCTGCTTGGGAATTTGCTCTTTGTACTCTCTAAGGTAGCAACTGTTTAGTTAAATTACATTTCTTGTTTTCAGACATGGCATATTTAGACTGTAATGGCATCTCTGATAGTTTGATTTAGTTGTTGGTAATAATTTATTTTGTTTATGAGGTAGTGAAACCATATAATAATTTTATCTCACTCCATAGGTAAGACGTTGAGTTATTTTCTATATGTCATTAACATGAGTAAAGACAAGCTTTGGAAGTAGTTTACATTATCTCTCATGCCCTTCTCAAGATTTATTTGGAACGAATTTTCTAAAATATGTTTTTAAGCGTGTTTTAAGCACTTCAAAAGTCATTTCAAGCCGGTTCAAAAGTCATTTCAAGCCGGTTCAAAATATGTTGAAGAAAATGATATGAATATTTACTCGATTGTATCACTTGATTATGTGATAACACAGGAGGATGTGGAATTTTTGTTGAAACTGGGGGCAGGTTCCATAGCAGGGGGATTTGGAATAAAGTATGGAAGCATAATATTTCCAGAGATAACCAAACCCAACATTGTACAAGCACTTATCATGATATCAACTCCTGTGGTTGTAGCAATATGGCTTTTGATCAAGCAAAGTCGTGAAGAGACACAAAGCTAACGATCCACTGTCGTTTTTACAAGATGATGAAAGGATTTTAACCATCCAAAAATTTGTAAAAGAAAAAAAAGTTAGAACTTGTAAAAGCACTAGAAATTGAAAACAGATGAAACACTTTATATTTTTGTGTTGCTCGATAAGATGCCTTACACTATTCATATTGCTCGGACTGTCAATATTTGATTGATTATCAGTTGAATAAATTACAAGTTTAGTTTTTAA

Coding sequence (CDS)

ATGGCAGCGACGGCGACGGCGACCGGAGTATTGAAGATCGGCGTTCCGGCACCAGCTCCAGCTCCAGCTCCGCCTCCGTTAAAGGCAAAATCAGGAAGGCATCCAACGAATTTTGCAAGCCTCACAATGCGCTATCCAAATTACTTTCTCAATACGCGGATGAAATTTCCTGCCGTTCGAGCACTTGGACAAGGAGGGAATCCGAGCGGCGACGACGACAACGACGCCGGCGGTTTCATCAATCAGGAGGATGTGGAATTTTTGTTGAAACTGGGGGCAGGTTCCATAGCAGGGGGATTTGGAATAAAGTATGGAAGCATAATATTTCCAGAGATAACCAAACCCAACATTGTACAAGCACTTATCATGATATCAACTCCTGTGGTTGTAGCAATATGGCTTTTGATCAAGCAAAGTCGTGAAGAGACACAAAGCTAA

Protein sequence

MAATATATGVLKIGVPAPAPAPAPPPLKAKSGRHPTNFASLTMRYPNYFLNTRMKFPAVRALGQGGNPSGDDDNDAGGFINQEDVEFLLKLGAGSIAGGFGIKYGSIIFPEITKPNIVQALIMISTPVVVAIWLLIKQSREETQS

Homology

[Close]

BLAST of Cucsat.G16835 vs. NCBI nr
Match: XP_004152177.2 (uncharacterized protein LOC101209077 isoform X1 [Cucumis sativus] >KGN52937.1 hypothetical protein Csa_014893 [Cucumis sativus])

HSP 1 Score: 281 bits (718), Expect = 3.74e-95
Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 0


Query: 1   MAATATATGVLKIGVPAPAPAPAPPPLKAKSGRHPTNFASLTMRYPNYFLNTRMKFPAVR 60
           MAATATATGVLKIGVPAPAPAPAPPPLKAKSGRHPTNFASLTMRYPNYFLNTRMKFPAVR
Sbjct: 1   MAATATATGVLKIGVPAPAPAPAPPPLKAKSGRHPTNFASLTMRYPNYFLNTRMKFPAVR 60

Query: 61  ALGQGGNPSGDDDNDAGGFINQEDVEFLLKLGAGSIAGGFGIKYGSIIFPEITKPNIVQA 120
           ALGQGGNPSGDDDNDAGGFINQEDVEFLLKLGAGSIAGGFGIKYGSIIFPEITKPNIVQA
Sbjct: 61  ALGQGGNPSGDDDNDAGGFINQEDVEFLLKLGAGSIAGGFGIKYGSIIFPEITKPNIVQA 120

Query: 121 LIMISTPVVVAIWLLIKQSREETQS 145
           LIMISTPVVVAIWLLIKQSREETQS
Sbjct: 121 LIMISTPVVVAIWLLIKQSREETQS 145

[Close]

BLAST of Cucsat.G16835 vs. NCBI nr
Match: XP_008454177.1 (PREDICTED: uncharacterized protein LOC103494660 [Cucumis melo] >XP_016901530.1 PREDICTED: uncharacterized protein LOC103494660 [Cucumis melo])

HSP 1 Score: 240 bits (612), Expect = 4.16e-79
Identity = 127/145 (87.59%), Postives = 131/145 (90.34%), Query Frame = 0


Query: 1   MAATATATGVLKIGVPAPAPAPAPPPLKAKSGRHPTNFASLTMRYPNYFLNTRMKFPAVR 60
           MAATATATGVLK G PAP        +KAKSGRH TNFA LT+RYPNYFLNTRMKFPA+R
Sbjct: 1   MAATATATGVLKFGAPAP--------VKAKSGRHLTNFARLTVRYPNYFLNTRMKFPALR 60

Query: 61  ALGQGGNPSGDDDNDAGGFINQEDVEFLLKLGAGSIAGGFGIKYGSIIFPEITKPNIVQA 120
           ALGQGG PSG+DDNDAGGFINQEDVEF LKLGAGSIAGGFGIKYGSIIFPEITKPNIVQA
Sbjct: 61  ALGQGGKPSGNDDNDAGGFINQEDVEFFLKLGAGSIAGGFGIKYGSIIFPEITKPNIVQA 120

Query: 121 LIMISTPVVVAIWLLIKQSREETQS 145
           LIMISTPVVVAIWLLIKQSREETQS
Sbjct: 121 LIMISTPVVVAIWLLIKQSREETQS 137

[Close]

BLAST of Cucsat.G16835 vs. NCBI nr
Match: XP_038902938.1 (uncharacterized protein LOC120089511 [Benincasa hispida])

HSP 1 Score: 213 bits (542), Expect = 1.82e-68
Identity = 113/145 (77.93%), Postives = 121/145 (83.45%), Query Frame = 0


Query: 1   MAATATATGVLKIGVPAPAPAPAPPPLKAKSGRHPTNFASLTMRYPNYFLNTRMKFPAVR 60
           MAA  T TG LKIG+PAP          AKS + PTNFA LT+RYPN FLNTR+KFPA+R
Sbjct: 1   MAAAVTTTGALKIGIPAP----------AKSEKKPTNFARLTVRYPNCFLNTRLKFPAIR 60

Query: 61  ALGQGGNPSGDDDNDAGGFINQEDVEFLLKLGAGSIAGGFGIKYGSIIFPEITKPNIVQA 120
           ALGQGGNPSG+DD DAGGFINQEDV+FLLKL AGSIAGG GIKYGSIIFPE+TKPNIVQA
Sbjct: 61  ALGQGGNPSGNDDTDAGGFINQEDVQFLLKLAAGSIAGGCGIKYGSIIFPEMTKPNIVQA 120

Query: 121 LIMISTPVVVAIWLLIKQSREETQS 145
           LIMIS PVVVAIWLLI QSREE QS
Sbjct: 121 LIMISAPVVVAIWLLINQSREERQS 135

[Close]

BLAST of Cucsat.G16835 vs. NCBI nr
Match: XP_022153461.1 (uncharacterized protein LOC111020963 [Momordica charantia])

HSP 1 Score: 174 bits (442), Expect = 3.72e-53
Identity = 103/151 (68.21%), Postives = 112/151 (74.17%), Query Frame = 0


Query: 1   MAATA-TATGVLKIGVPAPAPAPAPPPLKAKSGRHPTNFASLTMRYPNYFLNTRMKFPAV 60
           MAATA TATG LKIG+PAP           K  +  TNF  LT+RYPN  LNT  K  A+
Sbjct: 1   MAATAATATGALKIGIPAP----------VKPEKKATNFTRLTVRYPNCTLNTWPKVSAI 60

Query: 61  RAL-----GQGGNPSGDDDNDAGGFINQEDVEFLLKLGAGSIAGGFGIKYGSIIFPEITK 120
           RAL     G+GGN SG DD  AG FINQEDV+FLLKL AGSIAGG GIKYGSIIFP+I K
Sbjct: 61  RALDPETRGEGGNSSGSDDTGAGDFINQEDVQFLLKLVAGSIAGGAGIKYGSIIFPDIAK 120

Query: 121 PNIVQALIMISTPVVVAIWLLIKQSREETQS 145
           PN+VQALIMISTPVV+AIWLLIKQSREE QS
Sbjct: 121 PNLVQALIMISTPVVLAIWLLIKQSREERQS 141

[Close]

BLAST of Cucsat.G16835 vs. NCBI nr
Match: XP_022955512.1 (uncharacterized protein LOC111457518 isoform X1 [Cucurbita moschata] >KAG7018380.1 hypothetical protein SDJN02_20248 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 172 bits (435), Expect = 3.35e-52
Identity = 100/145 (68.97%), Postives = 111/145 (76.55%), Query Frame = 0


Query: 1   MAATATATGVLKIGVPAPAPAPAPPPLKAKSGRHPTNFASLTMRYPNYFLNTRMKFPAVR 60
           MAATA ATG  KIGVPAP  +   PP         TNF  LT+RYPN FLNTR K PA+R
Sbjct: 1   MAATAAATGAWKIGVPAPVKSEKKPP---------TNFTRLTVRYPNCFLNTRPKVPAIR 60

Query: 61  ALGQGGNPSGDDDNDAGGFINQEDVEFLLKLGAGSIAGGFGIKYGSIIFPEITKPNIVQA 120
           ALGQ GN SG DD D G  I+QEDV+F+LK+ AGSIA G GIKYGSIIFPE+TKPNIVQA
Sbjct: 61  ALGQEGNSSGGDD-DTG--ISQEDVQFVLKMAAGSIAVGGGIKYGSIIFPEMTKPNIVQA 120

Query: 121 LIMISTPVVVAIWLLIKQSREETQS 145
           LIM+STPVVVAIWLLI QSR++ QS
Sbjct: 121 LIMVSTPVVVAIWLLINQSRQDRQS 133

[Close]

BLAST of Cucsat.G16835 vs. ExPASy TrEMBL
Match: A0A0A0KWZ3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G006440 PE=4 SV=1)

HSP 1 Score: 281 bits (718), Expect = 1.81e-95
Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 0


Query: 1   MAATATATGVLKIGVPAPAPAPAPPPLKAKSGRHPTNFASLTMRYPNYFLNTRMKFPAVR 60
           MAATATATGVLKIGVPAPAPAPAPPPLKAKSGRHPTNFASLTMRYPNYFLNTRMKFPAVR
Sbjct: 1   MAATATATGVLKIGVPAPAPAPAPPPLKAKSGRHPTNFASLTMRYPNYFLNTRMKFPAVR 60

Query: 61  ALGQGGNPSGDDDNDAGGFINQEDVEFLLKLGAGSIAGGFGIKYGSIIFPEITKPNIVQA 120
           ALGQGGNPSGDDDNDAGGFINQEDVEFLLKLGAGSIAGGFGIKYGSIIFPEITKPNIVQA
Sbjct: 61  ALGQGGNPSGDDDNDAGGFINQEDVEFLLKLGAGSIAGGFGIKYGSIIFPEITKPNIVQA 120

Query: 121 LIMISTPVVVAIWLLIKQSREETQS 145
           LIMISTPVVVAIWLLIKQSREETQS
Sbjct: 121 LIMISTPVVVAIWLLIKQSREETQS 145

[Close]

BLAST of Cucsat.G16835 vs. ExPASy TrEMBL
Match: A0A1S4E0N1 (uncharacterized protein LOC103494660 OS=Cucumis melo OX=3656 GN=LOC103494660 PE=4 SV=1)

HSP 1 Score: 240 bits (612), Expect = 2.02e-79
Identity = 127/145 (87.59%), Postives = 131/145 (90.34%), Query Frame = 0


Query: 1   MAATATATGVLKIGVPAPAPAPAPPPLKAKSGRHPTNFASLTMRYPNYFLNTRMKFPAVR 60
           MAATATATGVLK G PAP        +KAKSGRH TNFA LT+RYPNYFLNTRMKFPA+R
Sbjct: 1   MAATATATGVLKFGAPAP--------VKAKSGRHLTNFARLTVRYPNYFLNTRMKFPALR 60

Query: 61  ALGQGGNPSGDDDNDAGGFINQEDVEFLLKLGAGSIAGGFGIKYGSIIFPEITKPNIVQA 120
           ALGQGG PSG+DDNDAGGFINQEDVEF LKLGAGSIAGGFGIKYGSIIFPEITKPNIVQA
Sbjct: 61  ALGQGGKPSGNDDNDAGGFINQEDVEFFLKLGAGSIAGGFGIKYGSIIFPEITKPNIVQA 120

Query: 121 LIMISTPVVVAIWLLIKQSREETQS 145
           LIMISTPVVVAIWLLIKQSREETQS
Sbjct: 121 LIMISTPVVVAIWLLIKQSREETQS 137

[Close]

BLAST of Cucsat.G16835 vs. ExPASy TrEMBL
Match: A0A6J1DKQ3 (uncharacterized protein LOC111020963 OS=Momordica charantia OX=3673 GN=LOC111020963 PE=4 SV=1)

HSP 1 Score: 174 bits (442), Expect = 1.80e-53
Identity = 103/151 (68.21%), Postives = 112/151 (74.17%), Query Frame = 0


Query: 1   MAATA-TATGVLKIGVPAPAPAPAPPPLKAKSGRHPTNFASLTMRYPNYFLNTRMKFPAV 60
           MAATA TATG LKIG+PAP           K  +  TNF  LT+RYPN  LNT  K  A+
Sbjct: 1   MAATAATATGALKIGIPAP----------VKPEKKATNFTRLTVRYPNCTLNTWPKVSAI 60

Query: 61  RAL-----GQGGNPSGDDDNDAGGFINQEDVEFLLKLGAGSIAGGFGIKYGSIIFPEITK 120
           RAL     G+GGN SG DD  AG FINQEDV+FLLKL AGSIAGG GIKYGSIIFP+I K
Sbjct: 61  RALDPETRGEGGNSSGSDDTGAGDFINQEDVQFLLKLVAGSIAGGAGIKYGSIIFPDIAK 120

Query: 121 PNIVQALIMISTPVVVAIWLLIKQSREETQS 145
           PN+VQALIMISTPVV+AIWLLIKQSREE QS
Sbjct: 121 PNLVQALIMISTPVVLAIWLLIKQSREERQS 141

[Close]

BLAST of Cucsat.G16835 vs. ExPASy TrEMBL
Match: A0A6J1GTV4 (uncharacterized protein LOC111457518 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111457518 PE=4 SV=1)

HSP 1 Score: 172 bits (435), Expect = 1.62e-52
Identity = 100/145 (68.97%), Postives = 111/145 (76.55%), Query Frame = 0


Query: 1   MAATATATGVLKIGVPAPAPAPAPPPLKAKSGRHPTNFASLTMRYPNYFLNTRMKFPAVR 60
           MAATA ATG  KIGVPAP  +   PP         TNF  LT+RYPN FLNTR K PA+R
Sbjct: 1   MAATAAATGAWKIGVPAPVKSEKKPP---------TNFTRLTVRYPNCFLNTRPKVPAIR 60

Query: 61  ALGQGGNPSGDDDNDAGGFINQEDVEFLLKLGAGSIAGGFGIKYGSIIFPEITKPNIVQA 120
           ALGQ GN SG DD D G  I+QEDV+F+LK+ AGSIA G GIKYGSIIFPE+TKPNIVQA
Sbjct: 61  ALGQEGNSSGGDD-DTG--ISQEDVQFVLKMAAGSIAVGGGIKYGSIIFPEMTKPNIVQA 120

Query: 121 LIMISTPVVVAIWLLIKQSREETQS 145
           LIM+STPVVVAIWLLI QSR++ QS
Sbjct: 121 LIMVSTPVVVAIWLLINQSRQDRQS 133

[Close]

BLAST of Cucsat.G16835 vs. ExPASy TrEMBL
Match: A0A6J1GU58 (uncharacterized protein LOC111457518 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111457518 PE=4 SV=1)

HSP 1 Score: 165 bits (418), Expect = 6.06e-50
Identity = 99/145 (68.28%), Postives = 110/145 (75.86%), Query Frame = 0


Query: 1   MAATATATGVLKIGVPAPAPAPAPPPLKAKSGRHPTNFASLTMRYPNYFLNTRMKFPAVR 60
           MAATA ATG  KIGVPAP  +   PP         TNF  LT+RYPN FLNTR K PA+R
Sbjct: 1   MAATAAATGAWKIGVPAPVKSEKKPP---------TNFTRLTVRYPNCFLNTRPKVPAIR 60

Query: 61  ALGQGGNPSGDDDNDAGGFINQEDVEFLLKLGAGSIAGGFGIKYGSIIFPEITKPNIVQA 120
           ALGQ GN SG DD D G  I+Q DV+F+LK+ AGSIA G GIKYGSIIFPE+TKPNIVQA
Sbjct: 61  ALGQEGNSSGGDD-DTG--ISQ-DVQFVLKMAAGSIAVGGGIKYGSIIFPEMTKPNIVQA 120

Query: 121 LIMISTPVVVAIWLLIKQSREETQS 145
           LIM+STPVVVAIWLLI QSR++ QS
Sbjct: 121 LIMVSTPVVVAIWLLINQSRQDRQS 132

The following BLAST results are available for this feature:

BLAST of Cucsat.G16835 vs.


Match Name	E-value	Identity	Description

BLAST of Cucsat.G16835 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004152177.2	3.74e-95	100.00	uncharacterized protein LOC101209077 isoform X1 [Cucumis sativus] >KGN52937.1 hy...	[more]
XP_008454177.1	4.16e-79	87.59	PREDICTED: uncharacterized protein LOC103494660 [Cucumis melo] >XP_016901530.1 P...	[more]
XP_038902938.1	1.82e-68	77.93	uncharacterized protein LOC120089511 [Benincasa hispida]	[more]
XP_022153461.1	3.72e-53	68.21	uncharacterized protein LOC111020963 [Momordica charantia]	[more]
XP_022955512.1	3.35e-52	68.97	uncharacterized protein LOC111457518 isoform X1 [Cucurbita moschata] >KAG7018380...	[more]

BLAST of Cucsat.G16835 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KWZ3	1.81e-95	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G006440 PE=4 SV=1	[more]
A0A1S4E0N1	2.02e-79	87.59	uncharacterized protein LOC103494660 OS=Cucumis melo OX=3656 GN=LOC103494660 PE=...	[more]
A0A6J1DKQ3	1.80e-53	68.21	uncharacterized protein LOC111020963 OS=Momordica charantia OX=3673 GN=LOC111020...	[more]
A0A6J1GTV4	1.62e-52	68.97	uncharacterized protein LOC111457518 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1GU58	6.06e-50	68.28	uncharacterized protein LOC111457518 isoform X2 OS=Cucurbita moschata OX=3662 GN...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR37224	OS02G0804400 PROTEIN	coord: 19..144
IPR018247	EF-Hand 1, calcium-binding site	PROSITE	PS00018	EF_HAND_1	coord: 73..85

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsat.G16835.T1	Cucsat.G16835.T1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane