Cucsat.G16624 (gene) Cucumber (B10) v3

Overview


Name	Cucsat.G16624
Type	gene
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	U11/U12 small nuclear ribonucleoprotein 25 kDa protein, putative
Location	ctg24: 1822050 .. 1823273 (+)
RNA-Seq Expression	Cucsat.G16624
Synteny	Cucsat.G16624

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AGCGAATTTAAAAAGTAGAATTCTTAGCGCGAGTCCATAAAGTAAATAAGCCTCCTTCCATTGCAATTTGTAACGGTCCTCTCCTTTCCATTTCAAAGCTCAGAACCAAACCACCAAAACAAACTTCCCCTAAATCCCTCCATTTCTCTTCCTTCCCATTCCGAATCCCAAACCCTAAAACTCCTTCATCACACCTCTACAATGCCAACCAGTTCTCCTCGCTCCGACCGGACCAAGATCGCTAACTTATGGCGTTTCACCCGCTTCATTGATTACCGGTGTTTTGCTCCGCCGACGCTCGACTTTGATCCTGACTCCGACGCTCTCAGTCGGAGGCCTTATCGCTTGCTTCCTCGTCAGGATCATATCGATCTTTTCGTCCTGAAGCTCGACGGTTCTGTTTTTGGTGATTCCTACTCCATTTTCTCCATTTTCTTTTTCTTCTGTTGTTTCTTGGAAGACGTGAGTAGAGAATCTGTGTTTCGGTGAAGTTTCTGTCGGTTTTCTGGTGGTTGAGAATCGATATGGAAAATGAATGATGAAAGATGGAAGGAAACTGTACTGGAAACTGTTTTAATATAACTTGCTTAAGAGAACAGAACGGAGTATGGTTTCTTGATAACGCTGTAGCGGTAAAATGCGTTTAGAAAAGAGTTGGTAATTAAGGTGTTTGGCGCTTATGGCTACAATGGCTAAGAAAAATGCAACGGCGATATGTTTAAATATCTCGATTCTTTAGTTTATGCAGCTTTTCTCTGCTTTAATTTGTAGGTGTGGAGATCATGTGAAAATAACTAAATATTTGATTTGAAGCTACTTGTTCTTTATATTGCGGGAATATGGTTACAGTGTCAACTACAAGTTAAACTGATTTCTGATTCTTTGGCTATTCAGGCATTCGAGTATCGCGGAACAGTACAGTAGCAGATCTTAAACGAGCAATAGAGAAGGTTTTTGATTCCCCCGGGGGGAGTGAACACTACAAGATTACATGGTAGTACTGACTATTTACGAGACTTGTGGCTAATTTTACACTGGAGATTTTGTTTTTGTTCCTTTTAGGAGCTTTGAGATGCTATTGGGTTTTCTATGAACGTCGTTTTGTTTATTTTCACCACATTCAACATTGCTGAATGTACATGTTCTTAGGTCACTTATCTGGGGACATTTCTGCTTATGTTATGAAGGCGAAAAGCTTATTGATGACAAGACATGCATTAAAGGTTATGGGATTAAGGATGGTGATCAGGTGTGAGAATATTGTGATGTGTCTCTTGCTTGTTCGTTGAGTTAAGCGTTAGGTGTTCTCTAGCTTTTAATGTTTTCCCCTGTTGTGATAATGCAGCTTCAGTTTATTAGGCACATGTCTATCAACTGTTTGTCGATGAAGAAAGACAGGAAGAACCAAACTGTTCCTTGCAAAGCAATGCTGTTGTGAGTTTCTAAGTTGTTCTTTCTTATAGCTGATGTTGCACATGTGTCCGTTTCTTGCAAAACAGTGTCATTTCTTATCTGTTCTCTTTATAGGCTGCACTAGCACATGCATAAACATGCCAATGCACGGGCACATACCGTTATCTTTTCTGAACAAAATTGCTTGATTTGATGGCTTGTAAGAAGCAAAAGATGAATACAAGAGATGGATACAGCACGACACTGATATTGAGACACGTTCTTTTCTAAAAATTTAGGATATGATATGGCAATAACACCTTTATTAAAATATTTATCATTTTTATATAAATTTTTTTTTAGTAAATGAGATTTATATGCTTAAAAAGTTGATGTATTTTACGCTCAAAATTTATTAAAATTGTCACATGTGTTTTCTTAATCTAACTCAACAAGTGATTTATGCATGTACAATTCATTTGTTGTACAGATACACTAGCCAAACTAGCCAAACTAAAGTGTCCATAGATTTTAGATGGCTTGTTTTTTAGTCCCATTGTACAGTCTACAAACTATGCATACTTTCCCAATATTTTCTTTGTTCTGCAATGAACAGTTGATGGTTTATTCTTGAACTGTTCTATTAGACAGTAAACTGATATTTCCCATAAAAGTTTCTCGCCAGAATCAAAAGCTGTTGAAGAGAATCAAGCAGATGGTCAAGACGATTTCAAGGATTATCAAGTTCACAGGGACGATTCGAACCGAGAGGAGGTTGCTTCTGTGGCGAGAGCTGGATTTCAGCTGGCAAATTTGTTCAAAGGACGGGTATTGTATTCCAGGATATGGGGTTTCTGTAAGAGTGCATCAGAAGGCAGGAATAGGGCTTCCTCTGCTTTTCGCATTGCTTGAGATTGGAAATGGACATGGAATCACACAAGCTGCAAGGTAATGAACTTACTTAGCTAGGAAGTGTAGGGATTGAAACTTAAGCATTTGATTTATGAACAAGGCAAGTTAGATTGGAGTAGGCCTAGGAGGAAAGGAAATAGAGGGAAGATTTCTGAAATGTAAATATTAGCCTCCATTTGTTGTTGGATAGTTTTGTAAAAAGTTCTTTTGCTTCACTTCTCTTTTCATCTTTGGAGTTAGCAGTGAAGTTAGGTCATGTTTACAATAATAGTATGAAAATTGGCTTCATTTTATTACTTTTGTTTCGTTGTTT

Coding sequence (CDS)

ATGCCAACCAGTTCTCCTCGCTCCGACCGGACCAAGATCGCTAACTTATGGCGTTTCACCCGCTTCATTGATTACCGGTGTTTTGCTCCGCCGACGCTCGACTTTGATCCTGACTCCGACGCTCTCAGTCGGAGGCCTTATCGCTTGCTTCCTCGTCAGGATCATATCGATCTTTTCGTCCTGAAGCTCGACGGTTCTGTTTTTGGCATTCGAGTATCGCGGAACAGTACAGTAGCAGATCTTAAACGAGCAATAGAGAAGGTTTTTGATTCCCCCGGGGGGAGTGAACACTACAAGATTACATGGTCACTTATCTGGGGACATTTCTGCTTATGTTATGAAGGCGAAAAGCTTATTGATGACAAGACATGCATTAAAGGTTATGGGATTAAGGATGGTGATCAGCTTCAGTTTATTAGGCACATGTCTATCAACTGTTTGTCGATGAAGAAAGACAGGAAGAACCAAACTGTTCCTTGCAAAGCAATGCTGTTTTTCTCGCCAGAATCAAAAGCTGTTGAAGAGAATCAAGCAGATGGTCAAGACGATTTCAAGGATTATCAAGTTCACAGGGACGATTCGAACCGAGAGGAGGTTGCTTCTGTGGCGAGAGCTGGATTTCAGCTGGCAAATTTGTTCAAAGGACGGGTATTGTATTCCAGGATATGGGGTTTCTGTAAGAGTGCATCAGAAGGCAGGAATAGGGCTTCCTCTGCTTTTCGCATTGCTTGA

Protein sequence

MPTSSPRSDRTKIANLWRFTRFIDYRCFAPPTLDFDPDSDALSRRPYRLLPRQDHIDLFVLKLDGSVFGIRVSRNSTVADLKRAIEKVFDSPGGSEHYKITWSLIWGHFCLCYEGEKLIDDKTCIKGYGIKDGDQLQFIRHMSINCLSMKKDRKNQTVPCKAMLFFSPESKAVEENQADGQDDFKDYQVHRDDSNREEVASVARAGFQLANLFKGRVLYSRIWGFCKSASEGRNRASSAFRIA

Homology

[Close]

BLAST of Cucsat.G16624 vs. ExPASy Swiss-Prot
Match: Q3ZBQ4 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Bos taurus OX=9913 GN=SNRNP25 PE=2 SV=2)

HSP 1 Score: 65.5 bits (158), Expect = 7.3e-10
Identity = 32/81 (39.51%), Postives = 51/81 (62.96%), Query Frame = 0


Query: 107 VLKLDGSVFGIRVSRNSTVADLKRAIEKVF----DSPGGSEHYKITWSLIWGHFCLCYEG 166
           V K+DG V  + V +N+TV DLK+AI++      +  GG +H  I+WS +W  + L   G
Sbjct: 36  VCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLRQEREGGIQH--ISWSYVWRTYHLTSAG 95

Query: 167 EKLIDDKTCIKGYGIKDGDQV 184
           EKL +D+  ++ YGI++ D+V
Sbjct: 96  EKLTEDRKKLRDYGIRNRDEV 114

[Close]

BLAST of Cucsat.G16624 vs. ExPASy Swiss-Prot
Match: Q8VIK1 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Mus musculus OX=10090 GN=Snrnp25 PE=1 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 7.3e-10
Identity = 32/81 (39.51%), Postives = 51/81 (62.96%), Query Frame = 0


Query: 107 VLKLDGSVFGIRVSRNSTVADLKRAIEKVF----DSPGGSEHYKITWSLIWGHFCLCYEG 166
           V K+DG V  + V +N+TV DLK+AI++      +  GG +H  I+WS +W  + L   G
Sbjct: 36  VCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQH--ISWSYVWRTYHLTSAG 95

Query: 167 EKLIDDKTCIKGYGIKDGDQV 184
           EKL +D+  ++ YGI++ D+V
Sbjct: 96  EKLTEDRKKLRDYGIRNRDEV 114

[Close]

BLAST of Cucsat.G16624 vs. ExPASy Swiss-Prot
Match: Q9BV90 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Homo sapiens OX=9606 GN=SNRNP25 PE=1 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 2.8e-09
Identity = 31/81 (38.27%), Postives = 51/81 (62.96%), Query Frame = 0


Query: 107 VLKLDGSVFGIRVSRNSTVADLKRAIEKVF----DSPGGSEHYKITWSLIWGHFCLCYEG 166
           V K+DG V  + V +++TV DLK+AI++      +  GG +H  I+WS +W  + L   G
Sbjct: 45  VCKMDGEVMPVVVVQSATVLDLKKAIQRYVQLKQEREGGIQH--ISWSYVWRTYHLTSAG 104

Query: 167 EKLIDDKTCIKGYGIKDGDQV 184
           EKL +D+  ++ YGI++ D+V
Sbjct: 105 EKLTEDRKKLRDYGIRNRDEV 123

[Close]

BLAST of Cucsat.G16624 vs. ExPASy Swiss-Prot
Match: Q84WS8 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Arabidopsis thaliana OX=3702 GN=SNRNP25 PE=2 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 2.8e-09
Identity = 30/81 (37.04%), Postives = 45/81 (55.56%), Query Frame = 0


Query: 105 LFVLKLDGSVFGIRVSRNSTVADLKRAIEKVFD--SPGGSEHYKITWSLIWGHFCLCYEG 164
           L V+KLDGS   + V  ++T+ DLK  I+K  +        H  I+W  +W +FCL    
Sbjct: 54  LSVVKLDGSSLDVAVMNSATLKDLKLLIKKKVNEMEQANMGHRHISWKHVWSNFCLSCNN 113

Query: 165 EKLIDDKTCIKGYGIKDGDQV 184
           EKL+DD   ++  GI++  QV
Sbjct: 114 EKLLDDNAVLQDVGIRNNSQV 134

[Close]

BLAST of Cucsat.G16624 vs. NCBI nr
Match: KAE8649067.1 (hypothetical protein Csa_014530 [Cucumis sativus])

HSP 1 Score: 288 bits (737), Expect = 5.03e-97
Identity = 134/136 (98.53%), Postives = 135/136 (99.26%), Query Frame = 0


Query: 48  MPTSSPRSDRTKIANLWRFTRFIDYRCFAPPTLDFDPDSDALSRRPYRLLPRQDHIDLFV 107
           MPTSSPR DRTKIANLWRFTRFIDYRCFAPPTLDFDPDSDALSRRPYRLLPRQDHIDLFV
Sbjct: 1   MPTSSPRPDRTKIANLWRFTRFIDYRCFAPPTLDFDPDSDALSRRPYRLLPRQDHIDLFV 60

Query: 108 LKLDGSVFGIRVSRNSTVADLKRAIEKVFDSPGGSEHYKITWSLIWGHFCLCYEGEKLID 167
           LKLDGSVFGIRVSRNSTVADLKRAIEKVFDSPGGSEHYKITWSLIWGHFCLCYEGEKLID
Sbjct: 61  LKLDGSVFGIRVSRNSTVADLKRAIEKVFDSPGGSEHYKITWSLIWGHFCLCYEGEKLID 120

Query: 168 DKTCIKGYGIKDGDQV 183
           DKTCIKGYGIKDGDQ+
Sbjct: 121 DKTCIKGYGIKDGDQL 136

[Close]

BLAST of Cucsat.G16624 vs. NCBI nr
Match: XP_004152330.1 (uncharacterized protein LOC101206096 [Cucumis sativus])

HSP 1 Score: 288 bits (737), Expect = 6.32e-96
Identity = 134/136 (98.53%), Postives = 135/136 (99.26%), Query Frame = 0


Query: 48  MPTSSPRSDRTKIANLWRFTRFIDYRCFAPPTLDFDPDSDALSRRPYRLLPRQDHIDLFV 107
           MPTSSPR DRTKIANLWRFTRFIDYRCFAPPTLDFDPDSDALSRRPYRLLPRQDHIDLFV
Sbjct: 1   MPTSSPRPDRTKIANLWRFTRFIDYRCFAPPTLDFDPDSDALSRRPYRLLPRQDHIDLFV 60

Query: 108 LKLDGSVFGIRVSRNSTVADLKRAIEKVFDSPGGSEHYKITWSLIWGHFCLCYEGEKLID 167
           LKLDGSVFGIRVSRNSTVADLKRAIEKVFDSPGGSEHYKITWSLIWGHFCLCYEGEKLID
Sbjct: 61  LKLDGSVFGIRVSRNSTVADLKRAIEKVFDSPGGSEHYKITWSLIWGHFCLCYEGEKLID 120

Query: 168 DKTCIKGYGIKDGDQV 183
           DKTCIKGYGIKDGDQ+
Sbjct: 121 DKTCIKGYGIKDGDQL 136

[Close]

BLAST of Cucsat.G16624 vs. NCBI nr
Match: XP_008454174.1 (PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa protein isoform X2 [Cucumis melo])

HSP 1 Score: 273 bits (697), Expect = 6.25e-91
Identity = 126/136 (92.65%), Postives = 131/136 (96.32%), Query Frame = 0


Query: 48  MPTSSPRSDRTKIANLWRFTRFIDYRCFAPPTLDFDPDSDALSRRPYRLLPRQDHIDLFV 107
           MPTSSP SDRTKIANLWRFTRFIDYRCFAPPTLDF+PDSDALSRRPYRLLPRQD IDLFV
Sbjct: 1   MPTSSPHSDRTKIANLWRFTRFIDYRCFAPPTLDFNPDSDALSRRPYRLLPRQDLIDLFV 60

Query: 108 LKLDGSVFGIRVSRNSTVADLKRAIEKVFDSPGGSEHYKITWSLIWGHFCLCYEGEKLID 167
           LKLDGSVFG+RVSRNSTVADLKRAIE+VFDSPGGSEHYKITWSLIWGHFCLCYEGEKL D
Sbjct: 61  LKLDGSVFGVRVSRNSTVADLKRAIEEVFDSPGGSEHYKITWSLIWGHFCLCYEGEKLTD 120

Query: 168 DKTCIKGYGIKDGDQV 183
           DK CI+GY IKDGDQ+
Sbjct: 121 DKACIRGYSIKDGDQL 136

[Close]

BLAST of Cucsat.G16624 vs. NCBI nr
Match: XP_008454172.1 (PREDICTED: uncharacterized protein LOC103494657 isoform X1 [Cucumis melo])

HSP 1 Score: 273 bits (697), Expect = 7.68e-90
Identity = 126/136 (92.65%), Postives = 131/136 (96.32%), Query Frame = 0


Query: 48  MPTSSPRSDRTKIANLWRFTRFIDYRCFAPPTLDFDPDSDALSRRPYRLLPRQDHIDLFV 107
           MPTSSP SDRTKIANLWRFTRFIDYRCFAPPTLDF+PDSDALSRRPYRLLPRQD IDLFV
Sbjct: 1   MPTSSPHSDRTKIANLWRFTRFIDYRCFAPPTLDFNPDSDALSRRPYRLLPRQDLIDLFV 60

Query: 108 LKLDGSVFGIRVSRNSTVADLKRAIEKVFDSPGGSEHYKITWSLIWGHFCLCYEGEKLID 167
           LKLDGSVFG+RVSRNSTVADLKRAIE+VFDSPGGSEHYKITWSLIWGHFCLCYEGEKL D
Sbjct: 61  LKLDGSVFGVRVSRNSTVADLKRAIEEVFDSPGGSEHYKITWSLIWGHFCLCYEGEKLTD 120

Query: 168 DKTCIKGYGIKDGDQV 183
           DK CI+GY IKDGDQ+
Sbjct: 121 DKACIRGYSIKDGDQL 136

[Close]

BLAST of Cucsat.G16624 vs. NCBI nr
Match: TYK29607.1 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 261 bits (667), Expect = 1.67e-84
Identity = 126/155 (81.29%), Postives = 131/155 (84.52%), Query Frame = 0


Query: 48  MPTSSPRSDRTKIANLWRFTRFIDYRCFAPPTLDFDPDSDALSRRPYRLLPRQDHIDLFV 107
           MPTSSP SDRTKIANLWRFTRFIDYRCFAPPTLDF+PDSDALSRRPYRLLPRQD IDLFV
Sbjct: 1   MPTSSPHSDRTKIANLWRFTRFIDYRCFAPPTLDFNPDSDALSRRPYRLLPRQDLIDLFV 60

Query: 108 LKLDGSVFG-------------------IRVSRNSTVADLKRAIEKVFDSPGGSEHYKIT 167
           LKLDGSVFG                   +RVSRNSTVADLKRAIE+VFDSPGGSEHYKIT
Sbjct: 61  LKLDGSVFGDSYSIFFVFFISLLFLARRVRVSRNSTVADLKRAIEEVFDSPGGSEHYKIT 120

Query: 168 WSLIWGHFCLCYEGEKLIDDKTCIKGYGIKDGDQV 183
           WSLIWGHFCLCYEGEKL DDK CI+GY IKDGDQ+
Sbjct: 121 WSLIWGHFCLCYEGEKLTDDKACIRGYSIKDGDQL 155

[Close]

BLAST of Cucsat.G16624 vs. ExPASy TrEMBL
Match: A0A0A0KTJ1 (Ubiquitin_4 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G006470 PE=4 SV=1)

HSP 1 Score: 288 bits (737), Expect = 3.06e-96
Identity = 134/136 (98.53%), Postives = 135/136 (99.26%), Query Frame = 0


Query: 48  MPTSSPRSDRTKIANLWRFTRFIDYRCFAPPTLDFDPDSDALSRRPYRLLPRQDHIDLFV 107
           MPTSSPR DRTKIANLWRFTRFIDYRCFAPPTLDFDPDSDALSRRPYRLLPRQDHIDLFV
Sbjct: 1   MPTSSPRPDRTKIANLWRFTRFIDYRCFAPPTLDFDPDSDALSRRPYRLLPRQDHIDLFV 60

Query: 108 LKLDGSVFGIRVSRNSTVADLKRAIEKVFDSPGGSEHYKITWSLIWGHFCLCYEGEKLID 167
           LKLDGSVFGIRVSRNSTVADLKRAIEKVFDSPGGSEHYKITWSLIWGHFCLCYEGEKLID
Sbjct: 61  LKLDGSVFGIRVSRNSTVADLKRAIEKVFDSPGGSEHYKITWSLIWGHFCLCYEGEKLID 120

Query: 168 DKTCIKGYGIKDGDQV 183
           DKTCIKGYGIKDGDQ+
Sbjct: 121 DKTCIKGYGIKDGDQL 136

[Close]

BLAST of Cucsat.G16624 vs. ExPASy TrEMBL
Match: A0A1S3BYS1 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein isoform X2 OS=Cucumis melo OX=3656 GN=LOC103494657 PE=4 SV=1)

HSP 1 Score: 273 bits (697), Expect = 3.02e-91
Identity = 126/136 (92.65%), Postives = 131/136 (96.32%), Query Frame = 0


Query: 48  MPTSSPRSDRTKIANLWRFTRFIDYRCFAPPTLDFDPDSDALSRRPYRLLPRQDHIDLFV 107
           MPTSSP SDRTKIANLWRFTRFIDYRCFAPPTLDF+PDSDALSRRPYRLLPRQD IDLFV
Sbjct: 1   MPTSSPHSDRTKIANLWRFTRFIDYRCFAPPTLDFNPDSDALSRRPYRLLPRQDLIDLFV 60

Query: 108 LKLDGSVFGIRVSRNSTVADLKRAIEKVFDSPGGSEHYKITWSLIWGHFCLCYEGEKLID 167
           LKLDGSVFG+RVSRNSTVADLKRAIE+VFDSPGGSEHYKITWSLIWGHFCLCYEGEKL D
Sbjct: 61  LKLDGSVFGVRVSRNSTVADLKRAIEEVFDSPGGSEHYKITWSLIWGHFCLCYEGEKLTD 120

Query: 168 DKTCIKGYGIKDGDQV 183
           DK CI+GY IKDGDQ+
Sbjct: 121 DKACIRGYSIKDGDQL 136

[Close]

BLAST of Cucsat.G16624 vs. ExPASy TrEMBL
Match: A0A1S3BY00 (uncharacterized protein LOC103494657 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103494657 PE=4 SV=1)

HSP 1 Score: 273 bits (697), Expect = 3.72e-90
Identity = 126/136 (92.65%), Postives = 131/136 (96.32%), Query Frame = 0


Query: 48  MPTSSPRSDRTKIANLWRFTRFIDYRCFAPPTLDFDPDSDALSRRPYRLLPRQDHIDLFV 107
           MPTSSP SDRTKIANLWRFTRFIDYRCFAPPTLDF+PDSDALSRRPYRLLPRQD IDLFV
Sbjct: 1   MPTSSPHSDRTKIANLWRFTRFIDYRCFAPPTLDFNPDSDALSRRPYRLLPRQDLIDLFV 60

Query: 108 LKLDGSVFGIRVSRNSTVADLKRAIEKVFDSPGGSEHYKITWSLIWGHFCLCYEGEKLID 167
           LKLDGSVFG+RVSRNSTVADLKRAIE+VFDSPGGSEHYKITWSLIWGHFCLCYEGEKL D
Sbjct: 61  LKLDGSVFGVRVSRNSTVADLKRAIEEVFDSPGGSEHYKITWSLIWGHFCLCYEGEKLTD 120

Query: 168 DKTCIKGYGIKDGDQV 183
           DK CI+GY IKDGDQ+
Sbjct: 121 DKACIRGYSIKDGDQL 136

[Close]

BLAST of Cucsat.G16624 vs. ExPASy TrEMBL
Match: A0A5D3E0I5 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G002180 PE=4 SV=1)

HSP 1 Score: 261 bits (667), Expect = 8.11e-85
Identity = 126/155 (81.29%), Postives = 131/155 (84.52%), Query Frame = 0


Query: 48  MPTSSPRSDRTKIANLWRFTRFIDYRCFAPPTLDFDPDSDALSRRPYRLLPRQDHIDLFV 107
           MPTSSP SDRTKIANLWRFTRFIDYRCFAPPTLDF+PDSDALSRRPYRLLPRQD IDLFV
Sbjct: 1   MPTSSPHSDRTKIANLWRFTRFIDYRCFAPPTLDFNPDSDALSRRPYRLLPRQDLIDLFV 60

Query: 108 LKLDGSVFG-------------------IRVSRNSTVADLKRAIEKVFDSPGGSEHYKIT 167
           LKLDGSVFG                   +RVSRNSTVADLKRAIE+VFDSPGGSEHYKIT
Sbjct: 61  LKLDGSVFGDSYSIFFVFFISLLFLARRVRVSRNSTVADLKRAIEEVFDSPGGSEHYKIT 120

Query: 168 WSLIWGHFCLCYEGEKLIDDKTCIKGYGIKDGDQV 183
           WSLIWGHFCLCYEGEKL DDK CI+GY IKDGDQ+
Sbjct: 121 WSLIWGHFCLCYEGEKLTDDKACIRGYSIKDGDQL 155

[Close]

BLAST of Cucsat.G16624 vs. ExPASy TrEMBL
Match: A0A5A7TMQ0 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G002170 PE=4 SV=1)

HSP 1 Score: 261 bits (666), Expect = 1.15e-84
Identity = 125/155 (80.65%), Postives = 131/155 (84.52%), Query Frame = 0


Query: 48  MPTSSPRSDRTKIANLWRFTRFIDYRCFAPPTLDFDPDSDALSRRPYRLLPRQDHIDLFV 107
           MPTSSP SDRTKIANLWRFTRFIDYRCFAPPTLDF+PDSDALSRRPYRLLPRQD IDLFV
Sbjct: 1   MPTSSPHSDRTKIANLWRFTRFIDYRCFAPPTLDFNPDSDALSRRPYRLLPRQDLIDLFV 60

Query: 108 LKLDGSVFG-------------------IRVSRNSTVADLKRAIEKVFDSPGGSEHYKIT 167
           LKLDGSVFG                   +RVSRNSTVADLKRA+E+VFDSPGGSEHYKIT
Sbjct: 61  LKLDGSVFGDSYSIFFVFFISLLFLARRVRVSRNSTVADLKRAVEEVFDSPGGSEHYKIT 120

Query: 168 WSLIWGHFCLCYEGEKLIDDKTCIKGYGIKDGDQV 183
           WSLIWGHFCLCYEGEKL DDK CI+GY IKDGDQ+
Sbjct: 121 WSLIWGHFCLCYEGEKLTDDKACIRGYSIKDGDQL 155

The following BLAST results are available for this feature:

BLAST of Cucsat.G16624 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q3ZBQ4	7.3e-10	39.51	U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Bos taurus OX=9913 GN=...	[more]
Q8VIK1	7.3e-10	39.51	U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Mus musculus OX=10090 ...	[more]
Q9BV90	2.8e-09	38.27	U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Homo sapiens OX=9606 G...	[more]
Q84WS8	2.8e-09	37.04	U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Arabidopsis thaliana O...	[more]

BLAST of Cucsat.G16624 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8649067.1	5.03e-97	98.53	hypothetical protein Csa_014530 [Cucumis sativus]	[more]
XP_004152330.1	6.32e-96	98.53	uncharacterized protein LOC101206096 [Cucumis sativus]	[more]
XP_008454174.1	6.25e-91	92.65	PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa protein isoform X2 [Cu...	[more]
XP_008454172.1	7.68e-90	92.65	PREDICTED: uncharacterized protein LOC103494657 isoform X1 [Cucumis melo]	[more]
TYK29607.1	1.67e-84	81.29	U11/U12 small nuclear ribonucleoprotein 25 kDa protein isoform X2 [Cucumis melo ...	[more]

BLAST of Cucsat.G16624 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KTJ1	3.06e-96	98.53	Ubiquitin_4 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G006470...	[more]
A0A1S3BYS1	3.02e-91	92.65	U11/U12 small nuclear ribonucleoprotein 25 kDa protein isoform X2 OS=Cucumis mel...	[more]
A0A1S3BY00	3.72e-90	92.65	uncharacterized protein LOC103494657 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A5D3E0I5	8.11e-85	81.29	U11/U12 small nuclear ribonucleoprotein 25 kDa protein isoform X2 OS=Cucumis mel...	[more]
A0A5A7TMQ0	1.15e-84	80.65	U11/U12 small nuclear ribonucleoprotein 25 kDa protein isoform X2 OS=Cucumis mel...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR040610	SNRNP25, ubiquitin-like domain	PFAM	PF18036	Ubiquitin_4	coord: 57..142 e-value: 2.1E-24 score: 85.4
IPR040610	SNRNP25, ubiquitin-like domain	CDD	cd17058	Ubl_SNRNP25	coord: 55..141 e-value: 3.26868E-34 score: 116.464
None	No IPR available	GENE3D	3.10.20.90		coord: 52..148 e-value: 9.0E-32 score: 110.9
None	No IPR available	PANTHER	PTHR14942:SF9	OS02G0188500 PROTEIN	coord: 17..238
IPR039690	U11/U12 small nuclear ribonucleoprotein 25kDa protein	PANTHER	PTHR14942	U11/U12 SMALL NUCLEAR RIBONUCLEOPROTEIN 25 KDA PROTEIN	coord: 17..238
IPR029071	Ubiquitin-like domain superfamily	SUPERFAMILY	54236	Ubiquitin-like	coord: 53..146

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsat.G16624.T1	Cucsat.G16624.T1	mRNA
Cucsat.G16624.T4	Cucsat.G16624.T4	mRNA
Cucsat.G16624.T2	Cucsat.G16624.T2	mRNA
Cucsat.G16624.T3	Cucsat.G16624.T3	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005689	U12-type spliceosomal complex
molecular_function	GO:0005515	protein binding