Cucsat.G16573 (gene) Cucumber (B10) v3

Overview
NameCucsat.G16573
Typegene
OrganismCucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
DescriptionRibonuclease
Locationctg24: 884854 .. 887643 (+)
RNA-Seq ExpressionCucsat.G16573
SyntenyCucsat.G16573
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTTTGAGTGATTTTAAAATAAGTACTGAAACGCTGTTTAAACCTATAGCAAGAAAATTTGTGCTTGCACGCGGGAACAACCTAAAAGAAACACTAAATAGAAGAAAAAGCGGGAGGAGATTAGCTGATAAACTGCAATGTCTTCTCAAGATTCACTCCCAAAATGGACTTCCAAGCCTTGTGTAATGGGCATAGATGAAGCTGGTCGAGGCCCTGTTTTAGGTTTTCTATTTTCCTATTTGTTTTATTCCATTTCTGTCTCTTTTAACTCCGTTTCGATCATCATATTTTGGGATACTTTTTTTATTTCAGGTCCAATGGTGTATGGATGTTTGTACTGCGCCAGTTCCTATTTGAAACAACTTTCGTCTTTGAATTTTGCAGGTTTGCCTAATTTATGCTTCTATTCATTTTCTTTTTGACTGTTAATCATCATTCCCTGCTTCGTTTACTTCTCTTCCATGTAGACTCGAAAACTTTGAAAGAAGAGAAGAGGGAGGAATTGTTTGAAGATTTGAAGGCTAATGAGTCAATTGGATGGGCTGTTGATGTCATTGATCCTCGAGAACTTTCTTCGAAGATGCTAAATAAGTCAGTCTAAATGGTTTATGAATTCTTGCATTTGCACAAACACTCTACTTTCCACTACACCTTTTGAATTCGAAGGTACAAAGAATGGGATTCAGCTGAAATCTCCTTTTTTCTGGAACTTAAGTTGACTGATTAAGATGAAATCATTTAATTTCTAGTAATTCTTTAAACTAAGACAATGAAACTTATCTTCATTCAGAGTTAGAGTCAGCAAAAGACTGAACGTGGATAATGATGCTCTCCCTCCCTCCCCCTTCTAGTTTTGTTAATTTATGCACATCAAAGGGCAACTATGGCTTGGACTAAAGTTTTGTTTTTTTTCTCCTGCCTACTTTATCAAGAATATTACTTGTAAAGTTTATGAAATATGATGCTATCATAATTAATCATATGAGAATTATCACACCTGGGTTTTTGTTTCTGATTTCTTTTTTCTTTATTGCTCAACAGAGTAAAGATCAACCTAAATGAAATATCACATGACTCTGCGATGGGTCTGGTCACCAAGGTTCTAAGCATGGGAGTTCTTTTAACTGAGGTAACTCTTTCCCTTGTTTCTTCATTGACTGATGAAAAGAAACTAAACTTGTTAAGAATACAGTCCCGATAGAGATAGAAGAGGAAATAGCATTTGAAGAGGAAATAGCATTTGAAGAGGAGATAGCATATGGAATCTTGAACTTCATTTGTTATCATGTCATAACTTTTAACTTTTTTGGAGGGCAAAATATAAAAATTTCAAACTACAGATTTTTAATGCTTTGTTAATTATAGATCTAGACCAAAGTCCACAAGGAGGTAAAATGAACAAGTTTTATTTCTTGATTACAGTAGCACGGCGTGACACATTCTTTATTAGATAGATGTGTAAAAATTAAGTTTTGGATGTCATGTTCTTGATTTTTTTTTCAAGTCCATAATAGGGAGGGAAAGAAAATCCCCATTCAGCAAATCTCATCTTTATTTTCAGGTTTATGTGGATACTGTTGGAGATCCTGAAAAGTACAGGATCAAGTTGTCTGAAAAATTTCCTAATATAAAATTTGTAGTTGCAAAGAAAGCTGATAGCTTGTATCCTGTTGTCAGTGGGGCAAGCATAGTCGCAAAGGTAATGCTAATGCTTCCTTTTAGGATATAGCATTCTAACTGTTTCCCACACTTCAACATCAATGTGACTTGTAGGTCACAAGAGATCGTGCATTGCGGGAATGGGCATTGGAGGAAACAGCTGAAAACATGCATAGAAACTTTGGTTCTGGATACCCTGGAGGTCTATTTCATATGCTAAATATTTTTTGCAGCATCCTATAATCTGATTTTCGTTGCACAGGGTGATATCAATAATGCTCTTATGATTTAATCTATATAGATCCAACAACTAAATGTTGGTTAGAAGATCACAAGCACTCGGTATTTGGGTTCCCTACACTAGTCCGCTTCAGTTGGGGTACCTGCACTTCATATTTCAAAGACGTTGTTGAAGTATCATGGTTAGTTTTTACTCTGCCTTGTAAGAATTGTAGCTCTTTGCAGAATTAGCTCATTAAGCCATATAGAATTTCTTTTATGTTTGCCACGGTATGGAAAGGACAGGCTTTGTTCTAGCCTATAGTTTGTTTGCTGCACTCCACTTCTATTGTAGAATAGTTGGACAACAATTTAGGTTGGTTCCTGATGTCAACTTCTTGATACACTTTTATTGTAGAACTTTGGTATTAAGTTCTTTCGATTGTGTATTCACATTGATGTCATATTGTTATATTATTGTATTTACATGCTTGATTTACAGGGAGTCGGATAAAGTGGATGAAGATGGGGCAACGGGTGGGAGTGGTAAGAAACAATTAAGATTAAGCAATGTTGGCATCACCACATCCAAGAGAAAGAGTGAAGAAATTGAATCAAGTGGCAAAGGACGGTGCAAGTTTTTCCAGGCTAGAAAACTTGAACAACTCTCTCGTTTTTGAATGTTTGATTACATTCTCCAATTGTTAAAGATTAACTAAGTAGCTTATAACCATTACTTTGGCTGTGTACCAACTGGTTATTGTGCTTGGAAAACTCTTTCTTAATGATGTGTAACAGTTACTTTGTAATCGCCTAAAAGTAGAATGCTGTTATACATTTCTCTTTTATCTTTTTTCCCACTTTTTCAAATGGCTCCTAATTTGAACATTTGGAGAAGTGTTTTTAGGTCTAAAAATCACTTCTCCCTCTTTTGAAAGCTT

Coding sequence (CDS)

ATGTCTTCTCAAGATTCACTCCCAAAATGGACTTCCAAGCCTTGTGTAATGGGCATAGATGAAGCTGGTCGAGGCCCTGTTTTAGGTCCAATGGTGTATGGATGTTTGTACTGCGCCAGTTCCTATTTGAAACAACTTTCGTCTTTGAATTTTGCAGACTCGAAAACTTTGAAAGAAGAGAAGAGGGAGGAATTGTTTGAAGATTTGAAGGCTAATGAGTCAATTGGATGGGCTGTTGATGTCATTGATCCTCGAGAACTTTCTTCGAAGATGCTAAATAAAGTAAAGATCAACCTAAATGAAATATCACATGACTCTGCGATGGGTCTGGTCACCAAGGTTCTAAGCATGGGAGTTCTTTTAACTGAGGTTTATGTGGATACTGTTGGAGATCCTGAAAAGTACAGGATCAAGTTGTCTGAAAAATTTCCTAATATAAAATTTGTAGTTGCAAAGAAAGCTGATAGCTTGTATCCTGTTGTCAGTGGGGCAAGCATAGTCGCAAAGGTCACAAGAGATCGTGCATTGCGGGAATGGGCATTGGAGGAAACAGCTGAAAACATGCATAGAAACTTTGGTTCTGGATACCCTGGAGATCCAACAACTAAATGTTGGTTAGAAGATCACAAGCACTCGGTATTTGGGTTCCCTACACTAGTCCGCTTCAGTTGGGGTACCTGCACTTCATATTTCAAAGACGTTGTTGAAGTATCATGGGAGTCGGATAAAGTGGATGAAGATGGGGCAACGGGTGGGAGTGGTAAGAAACAATTAAGATTAAGCAATGTTGGCATCACCACATCCAAGAGAAAGAGTGAAGAAATTGAATCAAGTGGCAAAGGACGGTGCAAGTTTTTCCAGGCTAGAAAACTTGAACAACTCTCTCGTTTTTGA

Protein sequence

MSSQDSLPKWTSKPCVMGIDEAGRGPVLGPMVYGCLYCASSYLKQLSSLNFADSKTLKEEKREELFEDLKANESIGWAVDVIDPRELSSKMLNKVKINLNEISHDSAMGLVTKVLSMGVLLTEVYVDTVGDPEKYRIKLSEKFPNIKFVVAKKADSLYPVVSGASIVAKVTRDRALREWALEETAENMHRNFGSGYPGDPTTKCWLEDHKHSVFGFPTLVRFSWGTCTSYFKDVVEVSWESDKVDEDGATGGSGKKQLRLSNVGITTSKRKSEEIESSGKGRCKFFQARKLEQLSRF
Homology
[Close]
BLAST of Cucsat.G16573 vs. ExPASy Swiss-Prot
Match: Q9SEZ6 (Ribonuclease H2 subunit A OS=Arabidopsis thaliana OX=3702 GN=At2g25100 PE=2 SV=2)

HSP 1 Score: 285.4 bits (729), Expect = 4.7e-76
Identity = 135/190 (71.05%), Postives = 166/190 (87.37%), Query Frame = 0 

Query: 1   MGLVTKVLSMGVLLTEVYVDTVGDPEKYRIKLSEKFPNIKFVVAKKADSLYPVVSGASIV 60
           MGL+ +VL MGVLLTE Y+DTVGDP+KYRIKLSE+FP+IKFVV+KKADSL+P+VSGASIV
Sbjct: 108 MGLIKRVLDMGVLLTEAYLDTVGDPDKYRIKLSERFPSIKFVVSKKADSLFPIVSGASIV 167

Query: 61  AKVTRDRALREWALEETAENMHRNFGSGYPGDPTTKCWLEDHKHSVFGFPTLVRFSWGTC 120
           AKVTRDRAL+EW +EET E+++RNFGSGYPGDP TK WL  HKHSVFGFP+LVRFSWGTC
Sbjct: 168 AKVTRDRALKEWLVEETGEDINRNFGSGYPGDPETKAWLVQHKHSVFGFPSLVRFSWGTC 227

Query: 121 TSYFKDVVEVSWESDKVDEDGATGGSGKKQLRLSNVGITTSKRKSEEIESSGKGRCKFFQ 180
           T++ K  VEV+WE+D+ +E G  G S K+Q +LS+ G  T +++SEEIESSGKGRCKF Q
Sbjct: 228 TTHLKGEVEVAWEADENEESG-NGSSSKRQAKLSSFGFKTCEKRSEEIESSGKGRCKFLQ 287

Query: 181 ARKLEQLSRF 191
           ARK++QL++F
Sbjct: 288 ARKIQQLTQF 296

[Close]
BLAST of Cucsat.G16573 vs. ExPASy Swiss-Prot
Match: Q5U209 (Ribonuclease H2 subunit A OS=Rattus norvegicus OX=10116 GN=Rnaseh2a PE=2 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 2.6e-34
Identity = 67/140 (47.86%), Postives = 91/140 (65.00%), Query Frame = 0 

Query: 2   GLVTKVLSMGVLLTEVYVDTVGDPEKYRIKLSEKFPNIKFVVAKKADSLYPVVSGASIVA 61
           GL+   +   V +T+V+VDTVG PE Y+ +L ++FP I+  V  KADSL+PVVS ASI+A
Sbjct: 124 GLIQHAMDQNVKVTQVFVDTVGMPETYQARLQQRFPGIEVTVKAKADSLFPVVSAASIIA 183

Query: 62  KVTRDRALREWALEETAENMHRNFGSGYPGDPTTKCWLEDHKHSVFGFPTLVRFSWGTCT 121
           KV RD+A++ W   E+ + +  ++GSGYP DP TK WL  H   VFGFP  VRFSW T  
Sbjct: 184 KVARDQAVKNWQFVESLQGLDSDYGSGYPNDPKTKAWLRKHVDPVFGFPQFVRFSWSTAQ 243

Query: 122 SYF-KDVVEVSWESDKVDED 141
           +   K+   V+WE    +ED
Sbjct: 244 AILEKEAESVTWEDSAAEED 263

[Close]
BLAST of Cucsat.G16573 vs. ExPASy Swiss-Prot
Match: Q9VPP5 (Ribonuclease H2 subunit A OS=Drosophila melanogaster OX=7227 GN=CG13690 PE=2 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 4.4e-34
Identity = 88/190 (46.32%), Postives = 110/190 (57.89%), Query Frame = 0 

Query: 1   MGLVTKVLSMGVLLTEVYVDTVGDPEKYRIKLSEKFPNIKFVVAKKADSLYPVVSGASIV 60
           MGL+ + +  GV + EVYVDTVG PEKY+ KL ++FP+ K  VAKKADS YP+VS ASI 
Sbjct: 168 MGLIQQAIDAGVNIAEVYVDTVGPPEKYQEKLLKRFPSFKITVAKKADSTYPIVSAASIC 227

Query: 61  AKVTRDRALREWALEETAENMHRNFGSGYPGDPTTKCWLEDHKHSVFGFPTLVRFSWGTC 120
           AKVTRD AL+ W+  E        FGSGYPGDP T+ +L ++   VFGFP LVRFSW T 
Sbjct: 228 AKVTRDHALKVWSFPEGLVIKDNEFGSGYPGDPVTRRFLTEYIDLVFGFPRLVRFSWSTA 287

Query: 121 TSYFKDVVEVSWESDKVDEDGATGGSGKKQLRLSNVGITTSKRKSEEIESSGKGRCKFFQ 180
            +   D      E D+ D +       K  L     G T    KS EI    +  C+FF+
Sbjct: 288 ENALADKA-YDMEFDEPDSEKPKYAGTK--LTKFFKGTT----KSGEII---REECRFFK 347

Query: 181 ARKLEQLSRF 191
            R LE +  F
Sbjct: 348 QRHLESVMEF 347

[Close]
BLAST of Cucsat.G16573 vs. ExPASy Swiss-Prot
Match: Q9CWY8 (Ribonuclease H2 subunit A OS=Mus musculus OX=10090 GN=Rnaseh2a PE=1 SV=2)

HSP 1 Score: 144.8 bits (364), Expect = 9.8e-34
Identity = 68/140 (48.57%), Postives = 90/140 (64.29%), Query Frame = 0 

Query: 2   GLVTKVLSMGVLLTEVYVDTVGDPEKYRIKLSEKFPNIKFVVAKKADSLYPVVSGASIVA 61
           GL+   L   V +T+V+VDTVG PE Y+ +L + FP I+  V  KADSL+PVVS ASI A
Sbjct: 124 GLIQYALDQNVNVTQVFVDTVGMPETYQARLQQHFPGIEVTVKAKADSLFPVVSAASIFA 183

Query: 62  KVTRDRALREWALEETAENMHRNFGSGYPGDPTTKCWLEDHKHSVFGFPTLVRFSWGTCT 121
           KV RD+A++ W   E  +++  ++GSGYP DP TK WL  H   VFGFP  VRFSW T  
Sbjct: 184 KVARDKAVKNWQFVENLQDLDSDYGSGYPNDPKTKAWLRKHVDPVFGFPQFVRFSWSTAQ 243

Query: 122 SYF-KDVVEVSWESDKVDED 141
           +   K+  +V WE  + +ED
Sbjct: 244 AILEKEAEDVIWEDSEAEED 263

[Close]
BLAST of Cucsat.G16573 vs. ExPASy Swiss-Prot
Match: O75792 (Ribonuclease H2 subunit A OS=Homo sapiens OX=9606 GN=RNASEH2A PE=1 SV=2)

HSP 1 Score: 143.7 bits (361), Expect = 2.2e-33
Identity = 68/133 (51.13%), Postives = 90/133 (67.67%), Query Frame = 0 

Query: 2   GLVTKVLSMGVLLTEVYVDTVGDPEKYRIKLSEKFPNIKFVVAKKADSLYPVVSGASIVA 61
           GL+   L  GV +T+V+VDTVG PE Y+ +L + FP I+  V  KAD+LYPVVS ASI A
Sbjct: 123 GLIQYALDQGVNVTQVFVDTVGMPETYQARLQQSFPGIEVTVKAKADALYPVVSAASICA 182

Query: 62  KVTRDRALREWALEETAENMHRNFGSGYPGDPTTKCWLEDHKHSVFGFPTLVRFSWGTC- 121
           KV RD+A+++W   E  +++  ++GSGYP DP TK WL++H   VFGFP  VRFSW T  
Sbjct: 183 KVARDQAVKKWQFVEKLQDLDTDYGSGYPNDPKTKAWLKEHVEPVFGFPQFVRFSWRTAQ 242

Query: 122 TSYFKDVVEVSWE 134
           T   K+  +V WE
Sbjct: 243 TILEKEAEDVIWE 255

[Close]
BLAST of Cucsat.G16573 vs. NCBI nr
Match: XP_004152096.1 (ribonuclease H2 subunit A [Cucumis sativus] >KGN53090.1 hypothetical protein Csa_014407 [Cucumis sativus])

HSP 1 Score: 384 bits (987), Expect = 4.77e-133
Identity = 190/190 (100.00%), Postives = 190/190 (100.00%), Query Frame = 0 

Query: 1   MGLVTKVLSMGVLLTEVYVDTVGDPEKYRIKLSEKFPNIKFVVAKKADSLYPVVSGASIV 60
           MGLVTKVLSMGVLLTEVYVDTVGDPEKYRIKLSEKFPNIKFVVAKKADSLYPVVSGASIV
Sbjct: 108 MGLVTKVLSMGVLLTEVYVDTVGDPEKYRIKLSEKFPNIKFVVAKKADSLYPVVSGASIV 167

Query: 61  AKVTRDRALREWALEETAENMHRNFGSGYPGDPTTKCWLEDHKHSVFGFPTLVRFSWGTC 120
           AKVTRDRALREWALEETAENMHRNFGSGYPGDPTTKCWLEDHKHSVFGFPTLVRFSWGTC
Sbjct: 168 AKVTRDRALREWALEETAENMHRNFGSGYPGDPTTKCWLEDHKHSVFGFPTLVRFSWGTC 227

Query: 121 TSYFKDVVEVSWESDKVDEDGATGGSGKKQLRLSNVGITTSKRKSEEIESSGKGRCKFFQ 180
           TSYFKDVVEVSWESDKVDEDGATGGSGKKQLRLSNVGITTSKRKSEEIESSGKGRCKFFQ
Sbjct: 228 TSYFKDVVEVSWESDKVDEDGATGGSGKKQLRLSNVGITTSKRKSEEIESSGKGRCKFFQ 287

Query: 181 ARKLEQLSRF 190
           ARKLEQLSRF
Sbjct: 288 ARKLEQLSRF 297

[Close]
BLAST of Cucsat.G16573 vs. NCBI nr
Match: XP_008453984.1 (PREDICTED: ribonuclease H2 subunit A isoform X2 [Cucumis melo])

HSP 1 Score: 381 bits (978), Expect = 2.07e-132
Identity = 188/190 (98.95%), Postives = 189/190 (99.47%), Query Frame = 0 

Query: 1   MGLVTKVLSMGVLLTEVYVDTVGDPEKYRIKLSEKFPNIKFVVAKKADSLYPVVSGASIV 60
           MGLVTKVLSMGVLLTEVYVDTVGDPEKYRIKLSEKFPNIKFVVAKKADSLYPVVSGASIV
Sbjct: 60  MGLVTKVLSMGVLLTEVYVDTVGDPEKYRIKLSEKFPNIKFVVAKKADSLYPVVSGASIV 119

Query: 61  AKVTRDRALREWALEETAENMHRNFGSGYPGDPTTKCWLEDHKHSVFGFPTLVRFSWGTC 120
           AKVTRDRALREWALEETAENMHRNFGSGYPGDPTTKCWLEDHKHSVFGFPTLVRFSWGTC
Sbjct: 120 AKVTRDRALREWALEETAENMHRNFGSGYPGDPTTKCWLEDHKHSVFGFPTLVRFSWGTC 179

Query: 121 TSYFKDVVEVSWESDKVDEDGATGGSGKKQLRLSNVGITTSKRKSEEIESSGKGRCKFFQ 180
           TSYFKDVVEVSWESDKVDEDGATGGSGKKQLRLSNVGITTSKRKSEEIES+ KGRCKFFQ
Sbjct: 180 TSYFKDVVEVSWESDKVDEDGATGGSGKKQLRLSNVGITTSKRKSEEIESNAKGRCKFFQ 239

Query: 181 ARKLEQLSRF 190
           ARKLEQLSRF
Sbjct: 240 ARKLEQLSRF 249

[Close]
BLAST of Cucsat.G16573 vs. NCBI nr
Match: XP_008453982.1 (PREDICTED: ribonuclease H2 subunit A isoform X1 [Cucumis melo] >KAA0044595.1 ribonuclease H2 subunit A isoform X1 [Cucumis melo var. makuwa] >TYK16989.1 ribonuclease H2 subunit A isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 381 bits (978), Expect = 1.12e-131
Identity = 188/190 (98.95%), Postives = 189/190 (99.47%), Query Frame = 0 

Query: 1   MGLVTKVLSMGVLLTEVYVDTVGDPEKYRIKLSEKFPNIKFVVAKKADSLYPVVSGASIV 60
           MGLVTKVLSMGVLLTEVYVDTVGDPEKYRIKLSEKFPNIKFVVAKKADSLYPVVSGASIV
Sbjct: 108 MGLVTKVLSMGVLLTEVYVDTVGDPEKYRIKLSEKFPNIKFVVAKKADSLYPVVSGASIV 167

Query: 61  AKVTRDRALREWALEETAENMHRNFGSGYPGDPTTKCWLEDHKHSVFGFPTLVRFSWGTC 120
           AKVTRDRALREWALEETAENMHRNFGSGYPGDPTTKCWLEDHKHSVFGFPTLVRFSWGTC
Sbjct: 168 AKVTRDRALREWALEETAENMHRNFGSGYPGDPTTKCWLEDHKHSVFGFPTLVRFSWGTC 227

Query: 121 TSYFKDVVEVSWESDKVDEDGATGGSGKKQLRLSNVGITTSKRKSEEIESSGKGRCKFFQ 180
           TSYFKDVVEVSWESDKVDEDGATGGSGKKQLRLSNVGITTSKRKSEEIES+ KGRCKFFQ
Sbjct: 228 TSYFKDVVEVSWESDKVDEDGATGGSGKKQLRLSNVGITTSKRKSEEIESNAKGRCKFFQ 287

Query: 181 ARKLEQLSRF 190
           ARKLEQLSRF
Sbjct: 288 ARKLEQLSRF 297

[Close]
BLAST of Cucsat.G16573 vs. NCBI nr
Match: KAG6582048.1 (Ribonuclease H2 subunit A, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 373 bits (958), Expect = 1.24e-128
Identity = 181/190 (95.26%), Postives = 187/190 (98.42%), Query Frame = 0 

Query: 1   MGLVTKVLSMGVLLTEVYVDTVGDPEKYRIKLSEKFPNIKFVVAKKADSLYPVVSGASIV 60
           MGLVTKVL MGVLLTEVYVDTVGDPEKYRIKLSEKFPN+KFVVAKKADSLYPVVSGASIV
Sbjct: 108 MGLVTKVLGMGVLLTEVYVDTVGDPEKYRIKLSEKFPNVKFVVAKKADSLYPVVSGASIV 167

Query: 61  AKVTRDRALREWALEETAENMHRNFGSGYPGDPTTKCWLEDHKHSVFGFPTLVRFSWGTC 120
           AKVTRDR LR+WALEETAENMHRNFGSGYPGDPTTKCWLEDHKHSVFGFPTLVRFSWGTC
Sbjct: 168 AKVTRDRVLRDWALEETAENMHRNFGSGYPGDPTTKCWLEDHKHSVFGFPTLVRFSWGTC 227

Query: 121 TSYFKDVVEVSWESDKVDEDGATGGSGKKQLRLSNVGITTSKRKSEEIESSGKGRCKFFQ 180
           TSYFKD+VEVSWESDKVDEDGATGGSGKKQLRLSNVGITTSKRKSEEIES+ KGRCKFFQ
Sbjct: 228 TSYFKDIVEVSWESDKVDEDGATGGSGKKQLRLSNVGITTSKRKSEEIESNAKGRCKFFQ 287

Query: 181 ARKLEQLSRF 190
           ARKLEQL++F
Sbjct: 288 ARKLEQLTQF 297

[Close]
BLAST of Cucsat.G16573 vs. NCBI nr
Match: KAG7018477.1 (Ribonuclease H2 subunit A [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 373 bits (957), Expect = 1.43e-128
Identity = 181/190 (95.26%), Postives = 186/190 (97.89%), Query Frame = 0 

Query: 1   MGLVTKVLSMGVLLTEVYVDTVGDPEKYRIKLSEKFPNIKFVVAKKADSLYPVVSGASIV 60
           MGLVTKVL MGVLLTEVYVDTVGDPEKYRIKLSEKFPN+KFVVAKKADSLYPVVSGASIV
Sbjct: 102 MGLVTKVLGMGVLLTEVYVDTVGDPEKYRIKLSEKFPNVKFVVAKKADSLYPVVSGASIV 161

Query: 61  AKVTRDRALREWALEETAENMHRNFGSGYPGDPTTKCWLEDHKHSVFGFPTLVRFSWGTC 120
           AKVTRDR LR+WALEETAENMHRNFGSGYPGDPTTKCWLEDHKHSVFGFPTLVRFSWGTC
Sbjct: 162 AKVTRDRVLRDWALEETAENMHRNFGSGYPGDPTTKCWLEDHKHSVFGFPTLVRFSWGTC 221

Query: 121 TSYFKDVVEVSWESDKVDEDGATGGSGKKQLRLSNVGITTSKRKSEEIESSGKGRCKFFQ 180
           TSYFKD+VEVSWESDKVDEDGATGGSGKKQLRLSNVGITTSKRKSEEIES+ KGRCKFFQ
Sbjct: 222 TSYFKDIVEVSWESDKVDEDGATGGSGKKQLRLSNVGITTSKRKSEEIESNAKGRCKFFQ 281

Query: 181 ARKLEQLSRF 190
           ARKLEQL+ F
Sbjct: 282 ARKLEQLTHF 291

[Close]
BLAST of Cucsat.G16573 vs. ExPASy TrEMBL
Match: A0A0A0KTZ4 (Ribonuclease OS=Cucumis sativus OX=3659 GN=Csa_4G015800 PE=3 SV=1)

HSP 1 Score: 384 bits (987), Expect = 2.31e-133
Identity = 190/190 (100.00%), Postives = 190/190 (100.00%), Query Frame = 0 

Query: 1   MGLVTKVLSMGVLLTEVYVDTVGDPEKYRIKLSEKFPNIKFVVAKKADSLYPVVSGASIV 60
           MGLVTKVLSMGVLLTEVYVDTVGDPEKYRIKLSEKFPNIKFVVAKKADSLYPVVSGASIV
Sbjct: 108 MGLVTKVLSMGVLLTEVYVDTVGDPEKYRIKLSEKFPNIKFVVAKKADSLYPVVSGASIV 167

Query: 61  AKVTRDRALREWALEETAENMHRNFGSGYPGDPTTKCWLEDHKHSVFGFPTLVRFSWGTC 120
           AKVTRDRALREWALEETAENMHRNFGSGYPGDPTTKCWLEDHKHSVFGFPTLVRFSWGTC
Sbjct: 168 AKVTRDRALREWALEETAENMHRNFGSGYPGDPTTKCWLEDHKHSVFGFPTLVRFSWGTC 227

Query: 121 TSYFKDVVEVSWESDKVDEDGATGGSGKKQLRLSNVGITTSKRKSEEIESSGKGRCKFFQ 180
           TSYFKDVVEVSWESDKVDEDGATGGSGKKQLRLSNVGITTSKRKSEEIESSGKGRCKFFQ
Sbjct: 228 TSYFKDVVEVSWESDKVDEDGATGGSGKKQLRLSNVGITTSKRKSEEIESSGKGRCKFFQ 287

Query: 181 ARKLEQLSRF 190
           ARKLEQLSRF
Sbjct: 288 ARKLEQLSRF 297

[Close]
BLAST of Cucsat.G16573 vs. ExPASy TrEMBL
Match: A0A1S3BYD1 (Ribonuclease OS=Cucumis melo OX=3656 GN=LOC103494542 PE=3 SV=1)

HSP 1 Score: 381 bits (978), Expect = 1.00e-132
Identity = 188/190 (98.95%), Postives = 189/190 (99.47%), Query Frame = 0 

Query: 1   MGLVTKVLSMGVLLTEVYVDTVGDPEKYRIKLSEKFPNIKFVVAKKADSLYPVVSGASIV 60
           MGLVTKVLSMGVLLTEVYVDTVGDPEKYRIKLSEKFPNIKFVVAKKADSLYPVVSGASIV
Sbjct: 60  MGLVTKVLSMGVLLTEVYVDTVGDPEKYRIKLSEKFPNIKFVVAKKADSLYPVVSGASIV 119

Query: 61  AKVTRDRALREWALEETAENMHRNFGSGYPGDPTTKCWLEDHKHSVFGFPTLVRFSWGTC 120
           AKVTRDRALREWALEETAENMHRNFGSGYPGDPTTKCWLEDHKHSVFGFPTLVRFSWGTC
Sbjct: 120 AKVTRDRALREWALEETAENMHRNFGSGYPGDPTTKCWLEDHKHSVFGFPTLVRFSWGTC 179

Query: 121 TSYFKDVVEVSWESDKVDEDGATGGSGKKQLRLSNVGITTSKRKSEEIESSGKGRCKFFQ 180
           TSYFKDVVEVSWESDKVDEDGATGGSGKKQLRLSNVGITTSKRKSEEIES+ KGRCKFFQ
Sbjct: 180 TSYFKDVVEVSWESDKVDEDGATGGSGKKQLRLSNVGITTSKRKSEEIESNAKGRCKFFQ 239

Query: 181 ARKLEQLSRF 190
           ARKLEQLSRF
Sbjct: 240 ARKLEQLSRF 249

[Close]
BLAST of Cucsat.G16573 vs. ExPASy TrEMBL
Match: A0A5A7TT92 (Ribonuclease OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold130G001310 PE=3 SV=1)

HSP 1 Score: 381 bits (978), Expect = 5.42e-132
Identity = 188/190 (98.95%), Postives = 189/190 (99.47%), Query Frame = 0 

Query: 1   MGLVTKVLSMGVLLTEVYVDTVGDPEKYRIKLSEKFPNIKFVVAKKADSLYPVVSGASIV 60
           MGLVTKVLSMGVLLTEVYVDTVGDPEKYRIKLSEKFPNIKFVVAKKADSLYPVVSGASIV
Sbjct: 108 MGLVTKVLSMGVLLTEVYVDTVGDPEKYRIKLSEKFPNIKFVVAKKADSLYPVVSGASIV 167

Query: 61  AKVTRDRALREWALEETAENMHRNFGSGYPGDPTTKCWLEDHKHSVFGFPTLVRFSWGTC 120
           AKVTRDRALREWALEETAENMHRNFGSGYPGDPTTKCWLEDHKHSVFGFPTLVRFSWGTC
Sbjct: 168 AKVTRDRALREWALEETAENMHRNFGSGYPGDPTTKCWLEDHKHSVFGFPTLVRFSWGTC 227

Query: 121 TSYFKDVVEVSWESDKVDEDGATGGSGKKQLRLSNVGITTSKRKSEEIESSGKGRCKFFQ 180
           TSYFKDVVEVSWESDKVDEDGATGGSGKKQLRLSNVGITTSKRKSEEIES+ KGRCKFFQ
Sbjct: 228 TSYFKDVVEVSWESDKVDEDGATGGSGKKQLRLSNVGITTSKRKSEEIESNAKGRCKFFQ 287

Query: 181 ARKLEQLSRF 190
           ARKLEQLSRF
Sbjct: 288 ARKLEQLSRF 297

[Close]
BLAST of Cucsat.G16573 vs. ExPASy TrEMBL
Match: A0A1S3BXP1 (Ribonuclease OS=Cucumis melo OX=3656 GN=LOC103494542 PE=3 SV=1)

HSP 1 Score: 381 bits (978), Expect = 5.42e-132
Identity = 188/190 (98.95%), Postives = 189/190 (99.47%), Query Frame = 0 

Query: 1   MGLVTKVLSMGVLLTEVYVDTVGDPEKYRIKLSEKFPNIKFVVAKKADSLYPVVSGASIV 60
           MGLVTKVLSMGVLLTEVYVDTVGDPEKYRIKLSEKFPNIKFVVAKKADSLYPVVSGASIV
Sbjct: 108 MGLVTKVLSMGVLLTEVYVDTVGDPEKYRIKLSEKFPNIKFVVAKKADSLYPVVSGASIV 167

Query: 61  AKVTRDRALREWALEETAENMHRNFGSGYPGDPTTKCWLEDHKHSVFGFPTLVRFSWGTC 120
           AKVTRDRALREWALEETAENMHRNFGSGYPGDPTTKCWLEDHKHSVFGFPTLVRFSWGTC
Sbjct: 168 AKVTRDRALREWALEETAENMHRNFGSGYPGDPTTKCWLEDHKHSVFGFPTLVRFSWGTC 227

Query: 121 TSYFKDVVEVSWESDKVDEDGATGGSGKKQLRLSNVGITTSKRKSEEIESSGKGRCKFFQ 180
           TSYFKDVVEVSWESDKVDEDGATGGSGKKQLRLSNVGITTSKRKSEEIES+ KGRCKFFQ
Sbjct: 228 TSYFKDVVEVSWESDKVDEDGATGGSGKKQLRLSNVGITTSKRKSEEIESNAKGRCKFFQ 287

Query: 181 ARKLEQLSRF 190
           ARKLEQLSRF
Sbjct: 288 ARKLEQLSRF 297

[Close]
BLAST of Cucsat.G16573 vs. ExPASy TrEMBL
Match: A0A6J1GTR5 (Ribonuclease OS=Cucurbita moschata OX=3662 GN=LOC111457459 PE=3 SV=1)

HSP 1 Score: 373 bits (957), Expect = 8.54e-129
Identity = 181/190 (95.26%), Postives = 186/190 (97.89%), Query Frame = 0 

Query: 1   MGLVTKVLSMGVLLTEVYVDTVGDPEKYRIKLSEKFPNIKFVVAKKADSLYPVVSGASIV 60
           MGLVTKVL MGVLLTEVYVDTVGDPEKYRIKLSEKFPN+KFVVAKKADSLYPVVSGASIV
Sbjct: 108 MGLVTKVLGMGVLLTEVYVDTVGDPEKYRIKLSEKFPNVKFVVAKKADSLYPVVSGASIV 167

Query: 61  AKVTRDRALREWALEETAENMHRNFGSGYPGDPTTKCWLEDHKHSVFGFPTLVRFSWGTC 120
           AKVTRDR LR+WALEETAENMHRNFGSGYPGDPTTKCWLEDHKHSVFGFPTLVRFSWGTC
Sbjct: 168 AKVTRDRVLRDWALEETAENMHRNFGSGYPGDPTTKCWLEDHKHSVFGFPTLVRFSWGTC 227

Query: 121 TSYFKDVVEVSWESDKVDEDGATGGSGKKQLRLSNVGITTSKRKSEEIESSGKGRCKFFQ 180
           TSYFKD+VEVSWESDKVDEDGATGGSGKKQLRLSNVGITTSKRKSEEIES+ KGRCKFFQ
Sbjct: 228 TSYFKDIVEVSWESDKVDEDGATGGSGKKQLRLSNVGITTSKRKSEEIESNAKGRCKFFQ 287

Query: 181 ARKLEQLSRF 190
           ARKLEQL+ F
Sbjct: 288 ARKLEQLTHF 297

The following BLAST results are available for this feature:
BLAST of Cucsat.G16573 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9SEZ64.7e-7671.05Ribonuclease H2 subunit A OS=Arabidopsis thaliana OX=3702 GN=At2g25100 PE=2 SV=2[more]
Q5U2092.6e-3447.86Ribonuclease H2 subunit A OS=Rattus norvegicus OX=10116 GN=Rnaseh2a PE=2 SV=1[more]
Q9VPP54.4e-3446.32Ribonuclease H2 subunit A OS=Drosophila melanogaster OX=7227 GN=CG13690 PE=2 SV=... [more]
Q9CWY89.8e-3448.57Ribonuclease H2 subunit A OS=Mus musculus OX=10090 GN=Rnaseh2a PE=1 SV=2[more]
O757922.2e-3351.13Ribonuclease H2 subunit A OS=Homo sapiens OX=9606 GN=RNASEH2A PE=1 SV=2[more]
BLAST of Cucsat.G16573 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004152096.14.77e-133100.00ribonuclease H2 subunit A [Cucumis sativus] >KGN53090.1 hypothetical protein Csa... [more]
XP_008453984.12.07e-13298.95PREDICTED: ribonuclease H2 subunit A isoform X2 [Cucumis melo][more]
XP_008453982.11.12e-13198.95PREDICTED: ribonuclease H2 subunit A isoform X1 [Cucumis melo] >KAA0044595.1 rib... [more]
KAG6582048.11.24e-12895.26Ribonuclease H2 subunit A, partial [Cucurbita argyrosperma subsp. sororia][more]
KAG7018477.11.43e-12895.26Ribonuclease H2 subunit A [Cucurbita argyrosperma subsp. argyrosperma][more]
BLAST of Cucsat.G16573 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KTZ42.31e-133100.00Ribonuclease OS=Cucumis sativus OX=3659 GN=Csa_4G015800 PE=3 SV=1[more]
A0A1S3BYD11.00e-13298.95Ribonuclease OS=Cucumis melo OX=3656 GN=LOC103494542 PE=3 SV=1[more]
A0A5A7TT925.42e-13298.95Ribonuclease OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold130G001310 ... [more]
A0A1S3BXP15.42e-13298.95Ribonuclease OS=Cucumis melo OX=3656 GN=LOC103494542 PE=3 SV=1[more]
A0A6J1GTR58.54e-12995.26Ribonuclease OS=Cucurbita moschata OX=3662 GN=LOC111457459 PE=3 SV=1[more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 1..79
e-value: 1.9E-24
score: 88.4
IPR024567Ribonuclease HII/HIII domainPFAMPF01351RNase_HIIcoord: 4..120
e-value: 2.4E-23
score: 83.0
IPR023160Ribonuclease HII, helix-loop-helix cap domain superfamilyGENE3D1.10.10.460Ribonuclease hii. Domain 2coord: 80..127
e-value: 3.4E-20
score: 73.4
IPR001352Ribonuclease HII/HIIIPANTHERPTHR10954RIBONUCLEASE H2 SUBUNIT Acoord: 1..190
NoneNo IPR availablePANTHERPTHR10954:SF19RIBONUCLEASEcoord: 1..190
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 7..126

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsat.G16573.T1Cucsat.G16573.T1mRNA
Cucsat.G16573.T7Cucsat.G16573.T7mRNA
Cucsat.G16573.T2Cucsat.G16573.T2mRNA
Cucsat.G16573.T6Cucsat.G16573.T6mRNA
Cucsat.G16573.T4Cucsat.G16573.T4mRNA
Cucsat.G16573.T5Cucsat.G16573.T5mRNA
Cucsat.G16573.T8Cucsat.G16573.T8mRNA
Cucsat.G16573.T18Cucsat.G16573.T18mRNA
Cucsat.G16573.T19Cucsat.G16573.T19mRNA
Cucsat.G16573.T12Cucsat.G16573.T12mRNA
Cucsat.G16573.T13Cucsat.G16573.T13mRNA
Cucsat.G16573.T3Cucsat.G16573.T3mRNA
Cucsat.G16573.T14Cucsat.G16573.T14mRNA
Cucsat.G16573.T15Cucsat.G16573.T15mRNA
Cucsat.G16573.T9Cucsat.G16573.T9mRNA
Cucsat.G16573.T11Cucsat.G16573.T11mRNA
Cucsat.G16573.T17Cucsat.G16573.T17mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0043137 DNA replication, removal of RNA primer
biological_process GO:0006298 mismatch repair
biological_process GO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic
biological_process GO:0016070 RNA metabolic process
cellular_component GO:0032299 ribonuclease H2 complex
molecular_function GO:0046872 metal ion binding
molecular_function GO:0003723 RNA binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity
molecular_function GO:0016740 transferase activity
molecular_function GO:0003676 nucleic acid binding