Cucsat.G16567 (gene) Cucumber (B10) v3

Overview


Name	Cucsat.G16567
Type	gene
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	Mis18-binding protein 1-like isoform X1
Location	ctg24: 826295 .. 827981 (+)
RNA-Seq Expression	Cucsat.G16567
Synteny	Cucsat.G16567

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AGGTTGATTACATTTCAGTTTTTCTAACTATTTTTGATTGATGCACATTGGAATATACCGACGTGAAGAGAAAGCATCACTACATATATATCTTAAACCCCATTTTCTTCTCATTCCTCACTCGCTGCCGTTGCTAAACCCACCTGCTTTTCTTCAAGCAATGGCGGATGAGATAAGTTCTGACTATGCTGATGGGTTTAATCCTAAATTCTTATCATCTGAGAAACCCCAGTCTCCTTCTCGACTGGTGGATTCTGCCTTACAGATCTCTGCCGATCACCATAACTTCCCTCTCATCGTCTCGAATCAAAACCCGGACTCTGAAGTCATCAACAGTGTGACTTCCGCTTCTGCGCAAGAAGACCCAGAGACTTCTGTGGACAAGATGGTCTTGTGCGATTCGGCTTGTGGGTCTTCTGAAAACGGAGGAAATATGGGAAGTTTGGTGGTGGGCAAGATTCAGAATCTTGACCTTGAGCTCGGAAAAGAACCTCTCAAGGTGGACGCTGTCCATGATTTTGGAACGCTCGATACCGGGGAAGATGGGAAGCAAGATGTTGCTGTCGATGAAGTAGATGTGAAAGATTTTGCAAGAAGTGTACTAAGTCTTGATGGGAATCAAGATTGTGCGAAGGAAGAACTTGTTCGAGAAGGTCAGTTGGCTGCTGACAAAGAAGCCTTTGCACGAACGGAGAAGTTGTTGAAGAAAGAAACTGATTCTGAGAGCATTTTGGAAATGAAAAAGAAATTACTATTGGAAAAAATCGACGCCATGTTGGTTCCTGGAGATGAAATTCATCTACAGGAGGGAGACAATCCCCCTAGCTCAGGAGGGATCGTGGACGGTTGCAAAAAAACGATGCTTATGGGTGAGGAGAAGATTGCTGATCAGCAAAATAATGATTCTGAAACCATGAATGTTCTTAGAAGAAGTCATTTGTCTCTCAGAAATTCATTGAAGATTGAAGTAATAGACGAAACTGCATTAGTTGAACCGGTTCATGTCTCCAGAATTGGAAATGGAGAAGGGATTGGTATTGTTTGTCCAACAAGGTCAATGCAGATGAAGGTGAACAAATCCCATGAACCTGATAAAGGAGGGAAAAAGGCTAAAAAATCAAGGAGGAAGGCAAGGGAAGGGAAGCTTTCTGAGATGCATTGGAATATGGGGAATCTGAACGAAGTTGATAAAGTCAATGGACGCCAAGAAAATGCGGAAGGAAACAAGATAGTGTATTCGAGGAAAGATATGGAAGCACTTAGGTTTGTGAATGTTGCAGAACAGAAAAGATTGTGGAAAGCTATATGTAAAGAACTTTTGCCCGTTGTAGCCAGGGAATACAGTAGCTTAACAATAAAGACAGGCTCTACCTCTGATCCTAGACAGCCTTTAGTGAAGAGAGAAGAAGCCTCTTCCATTATAAGTAAGTATTTATATTTCTAACTGAGTTGCTTATGAAGTTCGATTATGAATTTTTCTTGGATAAAAATGAAGTTTGTTTATGAATGGTTGCTTAGGATTCTAAAGTATGGCTACTATCACTGTATGAAGATGTCTATGAATGGCAATCTTTTGATAAATTGTCACTTTTATTAATTTTTTTCCCGTTGATTTCATAAGGTGCTTTCTGTTGAGAGTTTCTCTCATTCTTTCTGCTTCATGGTAAACCACGTTTTTGAGTTGAGGATTTTTAGGAAATTATTTTTCGTAATGGACGAATGCCCTTCGATTGGATAGTAAAAAAAGTTCATAAGCCTATTTTGGTTTTCTCAATACCTTATTTTCCTTCAGAAGATTATTTATTATTTTGAAACAAACGAGCTTCACAATTATTGTCATGGTTTTTGGTTTTGGTTGAGTCATTTTGATGGTTTCAATTTCTCTTGTGCACAGGTGTTGTTGCTGCACGGGGAAGATGGAATCATATGAATATTTTTGTGCATTGAAGAATGGCCTAAATCAATCCAACTAAAGACCTTATGTGCATCAAAATCAATATGTTTTCTGTAATAGGCAAATGATAAATCTTGTTTGTACAAATTTACCGACTACGCAAAGTTTTTGGTCATTTTTGTTTGGAAATTATTACAGTCTCATTCTTTTGTACATGATGCAAACTCATTAGTTTGGTGCTGAATAATATGAAAATAATTCAATTCTTTTTCACTCATTTGCGCTTCGTGATTTTGTCATCTCTCTTCATCAGAACCATACATATTCTTTATGGGGTGAAATTTGATGTTTAAATAGTTTGATAAGATCACTAAAATTCTGTGGCAACTAAACAGGGGAGGGATGTTCAGAAAGCTTGGATGGTGAGATAGAGGACATGGGTGGTGATGATGAAATTACAAACTTTGTAATTTCGGAACCCTCTTGCAGTCTTAGCCAAGATAGTGATGATGATAAATATTACCATAGTATTCAGAGACCCGCCTTTCATGTGGAGGGAGAACCCAATTTTGATTCAGGACCTCCAGAAGATGGACTAGAATATCTTAGACGTGTTAGGTAAGTTCTTATACGTAATTATTAGTACACTTGTTTAATGTTCTATGTAATTCCCTTGAGTTTCTCTGCCCCACATTTTATTTTAGAACTTCTTCAGCTTAGGTTGAGGTACTGTCATACTGTTTGATTCTGTATGAATTATTCGTCAAAGTGACCTTCAGCATAAAATGAATCAGATGACAAACAAGCATATAGACAAACTCGAGCATAATTAGCAAATGAAGAGGTTTAAATCGTGAGATGCAATGAGGCATAATGGTTCAGTTTTTCTTACATATGAAGTAAAAGACAAAGTGAGATAGCAAACTGTAGAAAAGTAATATGATGTATGAAAAGGTATAGTGTAGTGTATAGAAAATAATGAGACAATGAAAAAGAAAGGAAACATTGGTGCCTGTCATGGTGTGTTTTGCACTGAGGGTTCCTAGCGTATAGGCTCAACCTTGAAAACATGATTACATCTTTGAATCATAGAAAAAGAATACGATGTTCATCTTAGGATGAAACTGGAAGAGTGGCTTAGAGGCCTAAAGAGAATTTAAAGCTGCAATATGTTAGAAATCATCTTTCTTCTTGGGGATAAATGCGCATGTGCCTACTATTTTTTTTACTGCTAGTATTTTATTGCGCTCTTTAGTTGTCCCTAATATCTAAAAGAAAAGCATTGCTCAAAGCCTCGAACGTTACGATGCTTTTGTTAAATTAAAACAAAAACTCTGTAGTACTTTGGTGTGCTATATTAATAAGGTGGTAAAGAGCATTTTTCCTGAAGGTGCAAGGGTAGCTTGTTTTCAGTTAGTCCTGTCTATTATATTGTTTCTATGTACAAAAATGAGGCTTTCTGTTCTATATCTTGTCCTTTTTGACGTTCCTTGTTGTATTGTCAAGAAATTTGAGAAAACTATATGAGGGGATTTTGGAGGCGGTGATATGAGATAGAATATATTTAGTTAGGGTAATAGTGTTGTGTTGAATGAATAGTGAGATAGAATATATTTAGTTAGGGTAATAGTGTTGTGTTGAATGAATAGGATTATGATGTTGCAAACATGAATCTACTATCTTAATATTGTCTGGTTCTTCGTACTCGAAAAGTTTATGCGATTAGGAGTCTGTTCCCACTTGGCAGTCTGTTGGCTGTTAATCAACTATTTTTGGTAACAACGATTTTGGCTAATTTCCTAGTTGTTTTAATATGTATCTAGGATTGGACAAGCTTAAAATACAATCTAGATAGATACTAATACTATGATCTCTTGACTTAAAAAATCACCACTTTACTCATTCGTTACAAGGAAATCCCTCCAAGTAGAAAATACATAGAGGAGTCTATAGGAAGTGATATTCTCCCGAGGGGAAAAAAGGGAGAGGTGCTCTTCTTTCTCTCATTTCTCCATTTAGAGAGTATTTCATCAAGTTGATAGTTCATGTTTGATCTTACTTTTGTGATTATTGTTGAAATGTCTATCAATTTTAAGAAACTAAATGTGATGGCTTGAATTTGAACTAAAAAAAATTCCTTGTTAGGTGGGAGGCTTCCCATATTCCAAATGTGACGGTGGCAAAAGTTGATAGAAGTAATTTTAAGAAAGAGCAAAGTGTTTATATGCCGGTTATTCCTGCAATTGCTCAGTGCCCCGAGCATTTACTGCCTTCGAAAGAGTGGGAGAATGCATTTCTTGCTGATTTTTCTAAACTGCGTCAGGTAATTTACATCTACCTTATCAATAATCAGAAGAAAAAAAAGCATTTGAATGCCTATATCTTAAACTTTCTTTATCCCATGTTACTGAGTACTGGAATTTTCTTATATTAAATCTGTATCACATTCTATGTTTTGTTTCTTTCTTTTGGCTCTTGGTTAACCCCTAATGGTCTGTTATGTCTGAATGTACTTCTACGTTTGATTCTTACTTTAAGTTGATCATTTCAATGGCTGATAAATGAAATATGATGCCCCATCATTCTTGCATTAATTTAGATATAGTTCTGTCATTAGATTAAAAGGTGAGGAAACGAGAAACATGGCGGTAGATCTTTACGGCCAAAAGCCATAGGTTTTACTATCTTTACAAATTCAAAATATCTTTTGTATATCTATAAAAGGGGCCCCTTTTGTATATATTTGAATATTTCATTCAATCAATCAAATCGTTTCTTATAAAAAAAGTTAAGTCATAGAGTAGAATGAGAAGTTGTAAAGAGAATACTTGAAATGAGTTCTGGCAGAAAATAAGAAAATCATGGGTTTTCTTGATGATGCTAATAAATAGCTAATTGTCATGTCAGGCTCTATCACACTCTGAAGAAGAATGTATGAAGTCTGATTTCATCCTCCATGAAAAGATCGATCCTTTAGTTCCGAACTTAATAGCTCAGCCAAGTGTCTTGCCTGCCAATGATGCCGACTCACATCAATCTAAGGAATCAAGTGGCAGCACTTCAGCCAAGGAAAAGAGTTGCAACGATTATCCATCTTTATCAGCAATTTCAAAGATGAATCCAATATTTCGTGTTTCGTCGTTGAGGAAGCGCATAAACTCGTTCGAAACACAGACAACACTTTCAAGGGCCGATTGTCTTTGGTTGTTTGCTTTAAGTGCAGCAGTTGACACTCCTCTGGATGGAGATACTTGTGCTGCTTTCAGAAGTCTGCTTCGAAAATGTGCCAGCTTGCGGGCCGAGAAGACCGAGATTGACAACGAGGTGATAATGCTCAATATCCTTTCCACAATTTCTGGAAGGTACTTTGCACAGTCGGAAAATTGAAGCTATGATGGTGAGATCATTGACCTGTTTTTTATCTTCCTCCCAAAGTTGGTCTCTTGTTAGTCTTTTGGAGGACGATTCGAGGAGTCTGACTCAGACAGACAATGAAATTTGTAAATTAGTTTCTATTTCTGAAGGAAAAAAATTGAAGTGTGTTTAAGAAATTATTTTTTGATGACTTAGTAGAAATATTACTATGTTCTATTGTCCTTTATATTTTTTCATTAACAAACAATGCACGTTTTTACCTCGTTGAATTATGATT

Coding sequence (CDS)

ATGCACATTGGAATATACCGACGTGAAGAGAAAGCATCACTACATATATATCTTAAACCCCATTTTCTTCTCATTCCTCACTCGCTGCCGTTGCTAAACCCACCTGCTTTTCTTCAAGCAATGGCGGATGAGATAAGTTCTGACTATGCTGATGGGTTTAATCCTAAATTCTTATCATCTGAGAAACCCCAGTCTCCTTCTCGACTGGTGGATTCTGCCTTACAGATCTCTGCCGATCACCATAACTTCCCTCTCATCGTCTCGAATCAAAACCCGGACTCTGAAGTCATCAACAGTGTGACTTCCGCTTCTGCGCAAGAAGACCCAGAGACTTCTGTGGACAAGATGGTCTTGTGCGATTCGGCTTGTGGGTCTTCTGAAAACGGAGGAAATATGGGAAGTTTGGTGGTGGGCAAGATTCAGAATCTTGACCTTGAGCTCGGAAAAGAACCTCTCAAGGTGGACGCTGTCCATGATTTTGGAACGCTCGATACCGGGGAAGATGGGAAGCAAGATGTTGCTGTCGATGAAGTAGATGTGAAAGATTTTGCAAGAAGTGTACTAAGTCTTGATGGGAATCAAGATTGTGCGAAGGAAGAACTTGTTCGAGAAGGTCAGTTGGCTGCTGACAAAGAAGCCTTTGCACGAACGGAGAAGTTGTTGAAGAAAGAAACTGATTCTGAGAGCATTTTGGAAATGAAAAAGAAATTACTATTGGAAAAAATCGACGCCATGTTGGTTCCTGGAGATGAAATTCATCTACAGGAGGGAGACAATCCCCCTAGCTCAGGAGGGATCGTGGACGGTTGCAAAAAAACGATGCTTATGGGTGAGGAGAAGATTGCTGATCAGCAAAATAATGATTCTGAAACCATGAATGTTCTTAGAAGAAGTCATTTGTCTCTCAGAAATTCATTGAAGATTGAAGTAATAGACGAAACTGCATTAGTTGAACCGGTTCATGTCTCCAGAATTGGAAATGGAGAAGGGATTGGTATTGTTTGTCCAACAAGGTCAATGCAGATGAAGGTGAACAAATCCCATGAACCTGATAAAGGAGGGAAAAAGGCTAAAAAATCAAGGAGGAAGGCAAGGGAAGGGAAGCTTTCTGAGATGCATTGGAATATGGGGAATCTGAACGAAGTTGATAAAGTCAATGGACGCCAAGAAAATGCGGAAGGAAACAAGATAGTGTATTCGAGGAAAGATATGGAAGCACTTAGGTTTGTGAATGTTGCAGAACAGAAAAGATTGTGGAAAGCTATATGTAAAGAACTTTTGCCCGTTGTAGCCAGGGAATACAGTAGCTTAACAATAAAGACAGGCTCTACCTCTGATCCTAGACAGCCTTTAGTGAAGAGAGAAGAAGCCTCTTCCATTATAAGGGAGGGATGTTCAGAAAGCTTGGATGGTGAGATAGAGGACATGGGTGGTGATGATGAAATTACAAACTTTGTAATTTCGGAACCCTCTTGCAGTCTTAGCCAAGATAGTGATGATGATAAATATTACCATAGTATTCAGAGACCCGCCTTTCATGTGGAGGGAGAACCCAATTTTGATTCAGGACCTCCAGAAGATGGACTAGAATATCTTAGACGTGTTAGGTGGGAGGCTTCCCATATTCCAAATGTGACGGTGGCAAAAGTTGATAGAAGTAATTTTAAGAAAGAGCAAAGTGTTTATATGCCGGTTATTCCTGCAATTGCTCAGTGCCCCGAGCATTTACTGCCTTCGAAAGAGTGGGAGAATGCATTTCTTGCTGATTTTTCTAAACTGCGTCAGGCTCTATCACACTCTGAAGAAGAATGTATGAAGTCTGATTTCATCCTCCATGAAAAGATCGATCCTTTAGTTCCGAACTTAATAGCTCAGCCAAGTGTCTTGCCTGCCAATGATGCCGACTCACATCAATCTAAGGAATCAAGTGGCAGCACTTCAGCCAAGGAAAAGAGTTGCAACGATTATCCATCTTTATCAGCAATTTCAAAGATGAATCCAATATTTCGTGTTTCGTCGTTGAGGAAGCGCATAAACTCGTTCGAAACACAGACAACACTTTCAAGGGCCGATTGTCTTTGGTTGTTTGCTTTAAGTGCAGCAGTTGACACTCCTCTGGATGGAGATACTTGTGCTGCTTTCAGAAGTCTGCTTCGAAAATGTGCCAGCTTGCGGGCCGAGAAGACCGAGATTGACAACGAGGTGATAATGCTCAATATCCTTTCCACAATTTCTGGAAGGTACTTTGCACAGTCGGAAAATTGA

Protein sequence

MHIGIYRREEKASLHIYLKPHFLLIPHSLPLLNPPAFLQAMADEISSDYADGFNPKFLSSEKPQSPSRLVDSALQISADHHNFPLIVSNQNPDSEVINSVTSASAQEDPETSVDKMVLCDSACGSSENGGNMGSLVVGKIQNLDLELGKEPLKVDAVHDFGTLDTGEDGKQDVAVDEVDVKDFARSVLSLDGNQDCAKEELVREGQLAADKEAFARTEKLLKKETDSESILEMKKKLLLEKIDAMLVPGDEIHLQEGDNPPSSGGIVDGCKKTMLMGEEKIADQQNNDSETMNVLRRSHLSLRNSLKIEVIDETALVEPVHVSRIGNGEGIGIVCPTRSMQMKVNKSHEPDKGGKKAKKSRRKAREGKLSEMHWNMGNLNEVDKVNGRQENAEGNKIVYSRKDMEALRFVNVAEQKRLWKAICKELLPVVAREYSSLTIKTGSTSDPRQPLVKREEASSIIREGCSESLDGEIEDMGGDDEITNFVISEPSCSLSQDSDDDKYYHSIQRPAFHVEGEPNFDSGPPEDGLEYLRRVRWEASHIPNVTVAKVDRSNFKKEQSVYMPVIPAIAQCPEHLLPSKEWENAFLADFSKLRQALSHSEEECMKSDFILHEKIDPLVPNLIAQPSVLPANDADSHQSKESSGSTSAKEKSCNDYPSLSAISKMNPIFRVSSLRKRINSFETQTTLSRADCLWLFALSAAVDTPLDGDTCAAFRSLLRKCASLRAEKTEIDNEVIMLNILSTISGRYFAQSEN

Homology

[Close]

BLAST of Cucsat.G16567 vs. ExPASy Swiss-Prot
Match: O42260 (Gem-associated protein 2 OS=Xenopus laevis OX=8355 GN=gemin2 PE=2 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 2.6e-05
Identity = 55/197 (27.92%), Postives = 86/197 (43.65%), Query Frame = 0


Query: 11  PEHLLPSKEWENAFLADFSKLRQALSHSEEECMKSDFILHEKIDPLVPNLIAQPSVLPAN 70
           P+   PS  W+   +A FS +RQ+L H            H +  PL  N +  PS     
Sbjct: 69  PDGYSPSLRWQQQQVAQFSAVRQSL-HKHRG--------HWRSQPLDSN-VTMPS---TE 128

Query: 71  DADSHQ---------SKESSGSTSAKEKSCNDY------PSLSAISKMNPIFRVSSLRKR 130
           D +S +         S  ++   S  +    DY      P LS +S+M+     S L   
Sbjct: 129 DEESWKKFCLGERLYSDLAAALNSESQHPGIDYIKVGFPPLLSIVSRMSQATVTSVLEYL 188

Query: 131 INSFETQTTLSRADCLWLFALSAAVDTPLDGDTCAAFRSLLRKCASLRA-EKTEIDNEVI 190
           +N FE +         WL+AL A ++ PL  +  +  R L R+C+ +RA  + + D+ V 
Sbjct: 189 VNWFEERNFTPELG-RWLYALLACLEKPLLPEAHSLIRQLARRCSQIRAGVEHKEDDRVS 248

Query: 191 MLNILSTISGRYFAQSE 192
            LN+   + GRYF Q +
Sbjct: 249 PLNLFICLVGRYFEQRD 251

[Close]

BLAST of Cucsat.G16567 vs. ExPASy Swiss-Prot
Match: Q54KN2 (Gem-associated protein 2 OS=Dictyostelium discoideum OX=44689 GN=gemin2 PE=3 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 5.7e-05
Identity = 30/122 (24.59%), Postives = 64/122 (52.46%), Query Frame = 0


Query: 71  DADSHQSKESSGSTSAKEKSCNDYPSLSAISKMNPIFRVSSLRKRINSFETQTTLSRADC 130
           + +  + +E     S K+ +  + P++  + +++ +  V+ +   I   E +   ++   
Sbjct: 204 EEEEEEEEEEVVDYSTKKPTLGNKPTMDILCRLDHVLTVALVNYHIEWLE-KREFTQERS 263

Query: 131 LWLFALSAAVDTPLDGDTCAAFRSLLRKCASLRAEKTEI-DNEVIMLNILSTISGRYFAQ 190
            WL+ L + ++ P+D DTC+  RS +R+ +  R++ T + D  +  +NIL TI  +YF Q
Sbjct: 264 YWLYMLLSLLEKPIDPDTCSNLRSCIRRLSVFRSKITNLNDPNLPSINILFTIIAKYFDQ 323

Query: 191 SE 192
            E
Sbjct: 324 LE 324

[Close]

BLAST of Cucsat.G16567 vs. ExPASy Swiss-Prot
Match: O14893 (Gem-associated protein 2 OS=Homo sapiens OX=9606 GN=GEMIN2 PE=1 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 9.7e-05
Identity = 49/186 (26.34%), Postives = 87/186 (46.77%), Query Frame = 0


Query: 11  PEHLLPSKEWENAFLADFSKLRQAL----SHSEEECMKSDFILHEKIDPLVPNLIAQPSV 70
           PE   P+ +W+   +A FS +RQ +    SH + + + S+  + +  D            
Sbjct: 93  PEGYSPTLQWQQQQVAQFSTVRQNVNKHRSHWKSQQLDSNVTMPKSEDEEGWKKFCLGEK 152

Query: 71  LPANDADSHQSKESSGSTSAKEKSCNDYPSLSAISKMNPIFRVSSLRKRINSFETQTTLS 130
           L A+ A    + ES G    +       P LS +S+MN    V+S+ + ++++  +   +
Sbjct: 153 LCADGAVGPATNESPGIDYVQ---IGFPPLLSIVSRMNQA-TVTSVLEYLSNWFGERDFT 212

Query: 131 RADCLWLFALSAAVDTPLDGDTCAAFRSLLRKCASLRAEKTEIDNE-VIMLNILSTISGR 190
                WL+AL A ++ PL  +  +  R L R+C+ +R      D+E V  LN+L  +  R
Sbjct: 213 PELGRWLYALLACLEKPLLPEAHSLIRQLARRCSEVRLLVDSKDDERVPALNLLICLVSR 272

Query: 191 YFAQSE 192
           YF Q +
Sbjct: 273 YFDQRD 274

[Close]

BLAST of Cucsat.G16567 vs. NCBI nr
Match: XP_004152287.1 (uncharacterized protein LOC101215637 [Cucumis sativus])

HSP 1 Score: 378 bits (970), Expect = 8.52e-125
Identity = 192/192 (100.00%), Postives = 192/192 (100.00%), Query Frame = 0


Query: 1   MPVIPAIAQCPEHLLPSKEWENAFLADFSKLRQALSHSEEECMKSDFILHEKIDPLVPNL 60
           MPVIPAIAQCPEHLLPSKEWENAFLADFSKLRQALSHSEEECMKSDFILHEKIDPLVPNL
Sbjct: 523 MPVIPAIAQCPEHLLPSKEWENAFLADFSKLRQALSHSEEECMKSDFILHEKIDPLVPNL 582

Query: 61  IAQPSVLPANDADSHQSKESSGSTSAKEKSCNDYPSLSAISKMNPIFRVSSLRKRINSFE 120
           IAQPSVLPANDADSHQSKESSGSTSAKEKSCNDYPSLSAISKMNPIFRVSSLRKRINSFE
Sbjct: 583 IAQPSVLPANDADSHQSKESSGSTSAKEKSCNDYPSLSAISKMNPIFRVSSLRKRINSFE 642

Query: 121 TQTTLSRADCLWLFALSAAVDTPLDGDTCAAFRSLLRKCASLRAEKTEIDNEVIMLNILS 180
           TQTTLSRADCLWLFALSAAVDTPLDGDTCAAFRSLLRKCASLRAEKTEIDNEVIMLNILS
Sbjct: 643 TQTTLSRADCLWLFALSAAVDTPLDGDTCAAFRSLLRKCASLRAEKTEIDNEVIMLNILS 702

Query: 181 TISGRYFAQSEN 192
           TISGRYFAQSEN
Sbjct: 703 TISGRYFAQSEN 714

[Close]

BLAST of Cucsat.G16567 vs. NCBI nr
Match: KGN53109.2 (hypothetical protein Csa_015143 [Cucumis sativus])

HSP 1 Score: 378 bits (970), Expect = 2.44e-124
Identity = 192/192 (100.00%), Postives = 192/192 (100.00%), Query Frame = 0


Query: 1   MPVIPAIAQCPEHLLPSKEWENAFLADFSKLRQALSHSEEECMKSDFILHEKIDPLVPNL 60
           MPVIPAIAQCPEHLLPSKEWENAFLADFSKLRQALSHSEEECMKSDFILHEKIDPLVPNL
Sbjct: 563 MPVIPAIAQCPEHLLPSKEWENAFLADFSKLRQALSHSEEECMKSDFILHEKIDPLVPNL 622

Query: 61  IAQPSVLPANDADSHQSKESSGSTSAKEKSCNDYPSLSAISKMNPIFRVSSLRKRINSFE 120
           IAQPSVLPANDADSHQSKESSGSTSAKEKSCNDYPSLSAISKMNPIFRVSSLRKRINSFE
Sbjct: 623 IAQPSVLPANDADSHQSKESSGSTSAKEKSCNDYPSLSAISKMNPIFRVSSLRKRINSFE 682

Query: 121 TQTTLSRADCLWLFALSAAVDTPLDGDTCAAFRSLLRKCASLRAEKTEIDNEVIMLNILS 180
           TQTTLSRADCLWLFALSAAVDTPLDGDTCAAFRSLLRKCASLRAEKTEIDNEVIMLNILS
Sbjct: 683 TQTTLSRADCLWLFALSAAVDTPLDGDTCAAFRSLLRKCASLRAEKTEIDNEVIMLNILS 742

Query: 181 TISGRYFAQSEN 192
           TISGRYFAQSEN
Sbjct: 743 TISGRYFAQSEN 754

[Close]

BLAST of Cucsat.G16567 vs. NCBI nr
Match: XP_008454478.1 (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103494875 [Cucumis melo])

HSP 1 Score: 365 bits (938), Expect = 5.25e-120
Identity = 185/192 (96.35%), Postives = 189/192 (98.44%), Query Frame = 0


Query: 1   MPVIPAIAQCPEHLLPSKEWENAFLADFSKLRQALSHSEEECMKSDFILHEKIDPLVPNL 60
           MPVIPAIAQCPEHLLPSKEWENAFLADFSKLRQALSHSEEECMKSDFILHEKIDPLVPNL
Sbjct: 522 MPVIPAIAQCPEHLLPSKEWENAFLADFSKLRQALSHSEEECMKSDFILHEKIDPLVPNL 581

Query: 61  IAQPSVLPANDADSHQSKESSGSTSAKEKSCNDYPSLSAISKMNPIFRVSSLRKRINSFE 120
           IAQPSVLPA+DAD HQ +ES+GSTSAKEKSCNDYPSLSAISKMNPIFRVSSLRKRINSFE
Sbjct: 582 IAQPSVLPADDADLHQPEESNGSTSAKEKSCNDYPSLSAISKMNPIFRVSSLRKRINSFE 641

Query: 121 TQTTLSRADCLWLFALSAAVDTPLDGDTCAAFRSLLRKCASLRAEKTEIDNEVIMLNILS 180
           TQTTLSRADCLWLFALSAAVDTPLDGDTCAAFRSLLRKCASLRAEKTEID+EVIMLNILS
Sbjct: 642 TQTTLSRADCLWLFALSAAVDTPLDGDTCAAFRSLLRKCASLRAEKTEIDDEVIMLNILS 701

Query: 181 TISGRYFAQSEN 192
           TISGRYF QSEN
Sbjct: 702 TISGRYFGQSEN 713

[Close]

BLAST of Cucsat.G16567 vs. NCBI nr
Match: KAA0044617.1 (mis18-binding protein 1-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 353 bits (905), Expect = 2.99e-112
Identity = 179/185 (96.76%), Postives = 183/185 (98.92%), Query Frame = 0


Query: 1   MPVIPAIAQCPEHLLPSKEWENAFLADFSKLRQALSHSEEECMKSDFILHEKIDPLVPNL 60
           MPVIPAIAQCPEHLLPSKEWENAFLADFSKLRQALSHSEEECMKSDFILHEKIDPLVPNL
Sbjct: 522 MPVIPAIAQCPEHLLPSKEWENAFLADFSKLRQALSHSEEECMKSDFILHEKIDPLVPNL 581

Query: 61  IAQPSVLPANDADSHQSKESSGSTSAKEKSCNDYPSLSAISKMNPIFRVSSLRKRINSFE 120
           IAQPSVLPA+DAD HQ +ES+GSTSAKEKSCNDYPSLSAISKMNPIFRVSSLRKRINSFE
Sbjct: 582 IAQPSVLPADDADLHQPEESNGSTSAKEKSCNDYPSLSAISKMNPIFRVSSLRKRINSFE 641

Query: 121 TQTTLSRADCLWLFALSAAVDTPLDGDTCAAFRSLLRKCASLRAEKTEIDNEVIMLNILS 180
           TQTTLSRADCLWLFALSAAVDTPLDGDTCAAFRSLLRKCASLRAEKTEID+EVIMLNILS
Sbjct: 642 TQTTLSRADCLWLFALSAAVDTPLDGDTCAAFRSLLRKCASLRAEKTEIDDEVIMLNILS 701

Query: 181 TISGR 185
           TISGR
Sbjct: 702 TISGR 706

[Close]

BLAST of Cucsat.G16567 vs. NCBI nr
Match: TYK16972.1 (mis18-binding protein 1-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 353 bits (905), Expect = 2.99e-112
Identity = 179/185 (96.76%), Postives = 183/185 (98.92%), Query Frame = 0


Query: 1   MPVIPAIAQCPEHLLPSKEWENAFLADFSKLRQALSHSEEECMKSDFILHEKIDPLVPNL 60
           MPVIPAIAQCPEHLLPSKEWENAFLADFSKLRQALSHSEEECMKSDFILHEKIDPLVPNL
Sbjct: 522 MPVIPAIAQCPEHLLPSKEWENAFLADFSKLRQALSHSEEECMKSDFILHEKIDPLVPNL 581

Query: 61  IAQPSVLPANDADSHQSKESSGSTSAKEKSCNDYPSLSAISKMNPIFRVSSLRKRINSFE 120
           IAQPSVLPA+DAD HQ +ES+GSTSAKEKSCNDYPSLSAISKMNPIFRVSSLRKRINSFE
Sbjct: 582 IAQPSVLPADDADLHQPEESNGSTSAKEKSCNDYPSLSAISKMNPIFRVSSLRKRINSFE 641

Query: 121 TQTTLSRADCLWLFALSAAVDTPLDGDTCAAFRSLLRKCASLRAEKTEIDNEVIMLNILS 180
           TQTTLSRADCLWLFALSAAVDTPLDGDTCAAFRSLLRKCASLRAEKTEID+EVIMLNILS
Sbjct: 642 TQTTLSRADCLWLFALSAAVDTPLDGDTCAAFRSLLRKCASLRAEKTEIDDEVIMLNILS 701

Query: 181 TISGR 185
           TISGR
Sbjct: 702 TISGR 706

[Close]

BLAST of Cucsat.G16567 vs. ExPASy TrEMBL
Match: A0A0A0KXG5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G016410 PE=4 SV=1)

HSP 1 Score: 378 bits (970), Expect = 4.12e-125
Identity = 192/192 (100.00%), Postives = 192/192 (100.00%), Query Frame = 0


Query: 1   MPVIPAIAQCPEHLLPSKEWENAFLADFSKLRQALSHSEEECMKSDFILHEKIDPLVPNL 60
           MPVIPAIAQCPEHLLPSKEWENAFLADFSKLRQALSHSEEECMKSDFILHEKIDPLVPNL
Sbjct: 523 MPVIPAIAQCPEHLLPSKEWENAFLADFSKLRQALSHSEEECMKSDFILHEKIDPLVPNL 582

Query: 61  IAQPSVLPANDADSHQSKESSGSTSAKEKSCNDYPSLSAISKMNPIFRVSSLRKRINSFE 120
           IAQPSVLPANDADSHQSKESSGSTSAKEKSCNDYPSLSAISKMNPIFRVSSLRKRINSFE
Sbjct: 583 IAQPSVLPANDADSHQSKESSGSTSAKEKSCNDYPSLSAISKMNPIFRVSSLRKRINSFE 642

Query: 121 TQTTLSRADCLWLFALSAAVDTPLDGDTCAAFRSLLRKCASLRAEKTEIDNEVIMLNILS 180
           TQTTLSRADCLWLFALSAAVDTPLDGDTCAAFRSLLRKCASLRAEKTEIDNEVIMLNILS
Sbjct: 643 TQTTLSRADCLWLFALSAAVDTPLDGDTCAAFRSLLRKCASLRAEKTEIDNEVIMLNILS 702

Query: 181 TISGRYFAQSEN 192
           TISGRYFAQSEN
Sbjct: 703 TISGRYFAQSEN 714

[Close]

BLAST of Cucsat.G16567 vs. ExPASy TrEMBL
Match: A0A1S3BZY0 (LOW QUALITY PROTEIN: uncharacterized protein LOC103494875 OS=Cucumis melo OX=3656 GN=LOC103494875 PE=4 SV=1)

HSP 1 Score: 365 bits (938), Expect = 2.54e-120
Identity = 185/192 (96.35%), Postives = 189/192 (98.44%), Query Frame = 0


Query: 1   MPVIPAIAQCPEHLLPSKEWENAFLADFSKLRQALSHSEEECMKSDFILHEKIDPLVPNL 60
           MPVIPAIAQCPEHLLPSKEWENAFLADFSKLRQALSHSEEECMKSDFILHEKIDPLVPNL
Sbjct: 522 MPVIPAIAQCPEHLLPSKEWENAFLADFSKLRQALSHSEEECMKSDFILHEKIDPLVPNL 581

Query: 61  IAQPSVLPANDADSHQSKESSGSTSAKEKSCNDYPSLSAISKMNPIFRVSSLRKRINSFE 120
           IAQPSVLPA+DAD HQ +ES+GSTSAKEKSCNDYPSLSAISKMNPIFRVSSLRKRINSFE
Sbjct: 582 IAQPSVLPADDADLHQPEESNGSTSAKEKSCNDYPSLSAISKMNPIFRVSSLRKRINSFE 641

Query: 121 TQTTLSRADCLWLFALSAAVDTPLDGDTCAAFRSLLRKCASLRAEKTEIDNEVIMLNILS 180
           TQTTLSRADCLWLFALSAAVDTPLDGDTCAAFRSLLRKCASLRAEKTEID+EVIMLNILS
Sbjct: 642 TQTTLSRADCLWLFALSAAVDTPLDGDTCAAFRSLLRKCASLRAEKTEIDDEVIMLNILS 701

Query: 181 TISGRYFAQSEN 192
           TISGRYF QSEN
Sbjct: 702 TISGRYFGQSEN 713

[Close]

BLAST of Cucsat.G16567 vs. ExPASy TrEMBL
Match: A0A5A7TRY3 (Mis18-binding protein 1-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G003680 PE=4 SV=1)

HSP 1 Score: 353 bits (905), Expect = 1.45e-112
Identity = 179/185 (96.76%), Postives = 183/185 (98.92%), Query Frame = 0


Query: 1   MPVIPAIAQCPEHLLPSKEWENAFLADFSKLRQALSHSEEECMKSDFILHEKIDPLVPNL 60
           MPVIPAIAQCPEHLLPSKEWENAFLADFSKLRQALSHSEEECMKSDFILHEKIDPLVPNL
Sbjct: 522 MPVIPAIAQCPEHLLPSKEWENAFLADFSKLRQALSHSEEECMKSDFILHEKIDPLVPNL 581

Query: 61  IAQPSVLPANDADSHQSKESSGSTSAKEKSCNDYPSLSAISKMNPIFRVSSLRKRINSFE 120
           IAQPSVLPA+DAD HQ +ES+GSTSAKEKSCNDYPSLSAISKMNPIFRVSSLRKRINSFE
Sbjct: 582 IAQPSVLPADDADLHQPEESNGSTSAKEKSCNDYPSLSAISKMNPIFRVSSLRKRINSFE 641

Query: 121 TQTTLSRADCLWLFALSAAVDTPLDGDTCAAFRSLLRKCASLRAEKTEIDNEVIMLNILS 180
           TQTTLSRADCLWLFALSAAVDTPLDGDTCAAFRSLLRKCASLRAEKTEID+EVIMLNILS
Sbjct: 642 TQTTLSRADCLWLFALSAAVDTPLDGDTCAAFRSLLRKCASLRAEKTEIDDEVIMLNILS 701

Query: 181 TISGR 185
           TISGR
Sbjct: 702 TISGR 706

[Close]

BLAST of Cucsat.G16567 vs. ExPASy TrEMBL
Match: A0A5D3CZJ0 (Mis18-binding protein 1-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold130G001130 PE=4 SV=1)

HSP 1 Score: 353 bits (905), Expect = 1.45e-112
Identity = 179/185 (96.76%), Postives = 183/185 (98.92%), Query Frame = 0


Query: 1   MPVIPAIAQCPEHLLPSKEWENAFLADFSKLRQALSHSEEECMKSDFILHEKIDPLVPNL 60
           MPVIPAIAQCPEHLLPSKEWENAFLADFSKLRQALSHSEEECMKSDFILHEKIDPLVPNL
Sbjct: 522 MPVIPAIAQCPEHLLPSKEWENAFLADFSKLRQALSHSEEECMKSDFILHEKIDPLVPNL 581

Query: 61  IAQPSVLPANDADSHQSKESSGSTSAKEKSCNDYPSLSAISKMNPIFRVSSLRKRINSFE 120
           IAQPSVLPA+DAD HQ +ES+GSTSAKEKSCNDYPSLSAISKMNPIFRVSSLRKRINSFE
Sbjct: 582 IAQPSVLPADDADLHQPEESNGSTSAKEKSCNDYPSLSAISKMNPIFRVSSLRKRINSFE 641

Query: 121 TQTTLSRADCLWLFALSAAVDTPLDGDTCAAFRSLLRKCASLRAEKTEIDNEVIMLNILS 180
           TQTTLSRADCLWLFALSAAVDTPLDGDTCAAFRSLLRKCASLRAEKTEID+EVIMLNILS
Sbjct: 642 TQTTLSRADCLWLFALSAAVDTPLDGDTCAAFRSLLRKCASLRAEKTEIDDEVIMLNILS 701

Query: 181 TISGR 185
           TISGR
Sbjct: 702 TISGR 706

[Close]

BLAST of Cucsat.G16567 vs. ExPASy TrEMBL
Match: A0A6J1IAH4 (uncharacterized protein LOC111470733 OS=Cucurbita maxima OX=3661 GN=LOC111470733 PE=4 SV=1)

HSP 1 Score: 292 bits (747), Expect = 3.07e-92
Identity = 153/193 (79.27%), Postives = 169/193 (87.56%), Query Frame = 0


Query: 1   MPVIPAIAQCPEHLLPSKEWENAFLADFSKLRQALSHSEEECMKSDFILHEKIDPLVPNL 60
           MPVIPAIA CP++LLPSKEWE+AFLADFSKLRQ LS   E  M+SDFI HEKID + P+ 
Sbjct: 479 MPVIPAIANCPQNLLPSKEWEDAFLADFSKLRQVLS-CPEGLMQSDFIFHEKIDSVSPDS 538

Query: 61  IAQPSV-LPANDADSHQSKESSGSTSAKEKSCNDYPSLSAISKMNPIFRVSSLRKRINSF 120
           I QPSV LPAND DS Q +E + STS+KE SCN+YPSLSAISKMN +FRVSSLRKRINS 
Sbjct: 539 IDQPSVVLPANDIDSQQPEEPNASTSSKENSCNNYPSLSAISKMNLVFRVSSLRKRINSL 598

Query: 121 ETQTTLSRADCLWLFALSAAVDTPLDGDTCAAFRSLLRKCASLRAEKTEIDNEVIMLNIL 180
           ETQTTLSR DCLWLFALSAAVDTPLD DTCA+FRSLLRKCASLRAEK+E+D+EVIMLNIL
Sbjct: 599 ETQTTLSRTDCLWLFALSAAVDTPLDADTCASFRSLLRKCASLRAEKSELDDEVIMLNIL 658

Query: 181 STISGRYFAQSEN 192
           +TISGRYF QSEN
Sbjct: 659 ATISGRYFGQSEN 670

The following BLAST results are available for this feature:

BLAST of Cucsat.G16567 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O42260	2.6e-05	27.92	Gem-associated protein 2 OS=Xenopus laevis OX=8355 GN=gemin2 PE=2 SV=1	[more]
Q54KN2	5.7e-05	24.59	Gem-associated protein 2 OS=Dictyostelium discoideum OX=44689 GN=gemin2 PE=3 SV=...	[more]
O14893	9.7e-05	26.34	Gem-associated protein 2 OS=Homo sapiens OX=9606 GN=GEMIN2 PE=1 SV=1	[more]

BLAST of Cucsat.G16567 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004152287.1	8.52e-125	100.00	uncharacterized protein LOC101215637 [Cucumis sativus]	[more]
KGN53109.2	2.44e-124	100.00	hypothetical protein Csa_015143 [Cucumis sativus]	[more]
XP_008454478.1	5.25e-120	96.35	PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103494875 [Cucumis me...	[more]
KAA0044617.1	2.99e-112	96.76	mis18-binding protein 1-like isoform X1 [Cucumis melo var. makuwa]	[more]
TYK16972.1	2.99e-112	96.76	mis18-binding protein 1-like isoform X1 [Cucumis melo var. makuwa]	[more]

BLAST of Cucsat.G16567 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KXG5	4.12e-125	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G016410 PE=4 SV=1	[more]
A0A1S3BZY0	2.54e-120	96.35	LOW QUALITY PROTEIN: uncharacterized protein LOC103494875 OS=Cucumis melo OX=365...	[more]
A0A5A7TRY3	1.45e-112	96.76	Mis18-binding protein 1-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5D3CZJ0	1.45e-112	96.76	Mis18-binding protein 1-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A6J1IAH4	3.07e-92	79.27	uncharacterized protein LOC111470733 OS=Cucurbita maxima OX=3661 GN=LOC111470733...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR035426	Gemin2/Brr1	PFAM	PF04938	SIP1	coord: 42..276 e-value: 1.6E-41 score: 142.5
None	No IPR available	GENE3D	1.20.58.1070		coord: 101..279 e-value: 5.1E-42 score: 146.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 156..178
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 155..178
None	No IPR available	PANTHER	PTHR12794	GEMIN2	coord: 19..278
None	No IPR available	PANTHER	PTHR12794:SF0	GEM-ASSOCIATED PROTEIN 2	coord: 19..278
IPR017364	Gem-associated protein 2	PIRSF	PIRSF038038	Gemin-2	coord: 33..278 e-value: 7.3E-25 score: 85.7

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsat.G16567.T2	Cucsat.G16567.T2	mRNA
Cucsat.G16567.T1	Cucsat.G16567.T1	mRNA
Cucsat.G16567.T3	Cucsat.G16567.T3	mRNA
Cucsat.G16567.T4	Cucsat.G16567.T4	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000245	spliceosomal complex assembly
biological_process	GO:0000387	spliceosomal snRNP assembly
cellular_component	GO:0005634	nucleus
cellular_component	GO:0032797	SMN complex
cellular_component	GO:0005681	spliceosomal complex
molecular_function	GO:0016747	acyltransferase activity, transferring groups other than amino-acyl groups