Cucsat.G16541 (gene) Cucumber (B10) v3

Overview


Name	Cucsat.G16541
Type	gene
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	zinc finger CCCH domain-containing protein 54
Location	ctg24: 328357 .. 329815 (+)
RNA-Seq Expression	Cucsat.G16541
Synteny	Cucsat.G16541

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TAGTACTGTTTGTTCTATAAATGAGACCACTCTAATTCAACCTTTTCCTCTGTGCTTAGTTCATTCCCCTTGAAACCTGAGCCTTTCCCTCAAGCTCTCTCCTTTTCTCAACAATGGTGTTTCTCTCTCTCTCTCCTCCTCAATCCATAATTTCTCTCAGGTATACCTTAATTAAATATATAATAACAAAATTCTGTAGAAACACCCCATTTCTCAGTTCCATATTTTTAATTAATTCCCTTCAAATCCGTTTCCTAAACTTTCAATTTTTATATTAATTACAACACATTTGTGATTTGTTCTTCTTGCAGTCCAATTAATTAGTGTGCATATATTATGTTGCCCATTTTACCAAGTTTTTTAAAAAAAATTAAAAAAACCCCATTTCTCAATTTATTATTTTTAATGAATTCCCTCAAACTGTTTTACTAAAGTTTCAATTTTTTTAATTAATTAATACATTTATGATTTGTTCTTCTTGCAGGTGAATAATCAGTGCATATATATATATACATATATATATATAATGTATATTTACTTTCTTTTTTTTTTATAAAATTGAAAAACCCCATTTCTTAATTTTTCAATTCAATTAATTCCCTTGAATTCCTTTCCCAAACTTTCACTTTTTTCAAAAAATTAAATAACACATTTGTGATTTGTTCTTCTTGCAGGTGAATTAAGTAATATCTATTGTATGTAAAACCATGTCTTGATTGGAAAAGAAAAAAGGCAGTCGTTATTATTTTGTATATTTAATTTTTATTTTTTCATTAAAAAAAATGTTTCAAGGGTTTGTTTTTGGGATTAATGACGTGTACGGTCACGAATTCTCCGTCGTGTCACTGCCGGAACTCACTGTCGGTAACTTAACGGAGAAAACAGACGACACGGCGGTGTTCAGCTCCGACGAATTTCGGATGTACTCTTACAAGATCCAACGGTGTCCAAGAAACCGCAGCCATGATTGGACGGAATGTCCGTATGCACACCGTGGCGAGAAGGCGCAACGCCGTGACCCACGGCAGTTCAATTACACTGCTGTGGCCTGCCCGGCTTTTCGGTCCGGGAGCTGCCCGAAGGGGGATTTTTGTGAATTTGCTCATGGGGTTTTCGAGTATTGGCTTCACCCGGCTCGGTACCGGACCCGGGCCTGTAATGCCGGCCGATTTTGTCAAAGGAAAGTTTGTTTTTTTGCTCACTCGCCGGAGGAACTTCGGCCAGAAACCAAACAGAAGTCTAGTTTTAGTGCCCACCAGCAGCGTGTGGCGGTGGATGCCATTGAAAGTCCGCCGGAGGAAAAGAATGACGGAATTTTGGAAATCCCGGCGAGGGTGAGCGGCAGCGGACGGAAAAATGAACGGAGTTTTGGATTGGATGTGACGGAATTGGAGTTGCCGCATATTGAATGGATATCCGAATTGTTGAAGTAAATTCAATAAAGAATAATAATAAGAAA

Coding sequence (CDS)

ATGTTTCAAGGGTTTGTTTTTGGGATTAATGACGTGTACGGTCACGAATTCTCCGTCGTGTCACTGCCGGAACTCACTGTCGGTAACTTAACGGAGAAAACAGACGACACGGCGGTGTTCAGCTCCGACGAATTTCGGATGTACTCTTACAAGATCCAACGGTGTCCAAGAAACCGCAGCCATGATTGGACGGAATGTCCGTATGCACACCGTGGCGAGAAGGCGCAACGCCGTGACCCACGGCAGTTCAATTACACTGCTGTGGCCTGCCCGGCTTTTCGGTCCGGGAGCTGCCCGAAGGGGGATTTTTGTGAATTTGCTCATGGGGTTTTCGAGTATTGGCTTCACCCGGCTCGGTACCGGACCCGGGCCTGTAATGCCGGCCGATTTTGTCAAAGGAAAGTTTGTTTTTTTGCTCACTCGCCGGAGGAACTTCGGCCAGAAACCAAACAGAAGTCTAGTTTTAGTGCCCACCAGCAGCGTGTGGCGGTGGATGCCATTGAAAGTCCGCCGGAGGAAAAGAATGACGGAATTTTGGAAATCCCGGCGAGGGTGAGCGGCAGCGGACGGAAAAATGAACGGAGTTTTGGATTGGATGTGACGGAATTGGAGTTGCCGCATATTGAATGGATATCCGAATTGTTGAAGTAA

Protein sequence

MFQGFVFGINDVYGHEFSVVSLPELTVGNLTEKTDDTAVFSSDEFRMYSYKIQRCPRNRSHDWTECPYAHRGEKAQRRDPRQFNYTAVACPAFRSGSCPKGDFCEFAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHSPEELRPETKQKSSFSAHQQRVAVDAIESPPEEKNDGILEIPARVSGSGRKNERSFGLDVTELELPHIEWISELLK

Homology

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BLAST of Cucsat.G16541 vs. ExPASy Swiss-Prot
Match: O65036 (Zinc finger CCCH domain-containing protein 54 OS=Arabidopsis thaliana OX=3702 GN=TZF6 PE=1 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 2.3e-55
Identity = 111/210 (52.86%), Postives = 130/210 (61.90%), Query Frame = 0


Query: 36  DTAVFSSDEFRMYSYKIQRCPRNRSHDWTECPYAHRGEKAQRRDPRQFNYTAVACPAFRS 95
           D A++ SDEFRMY+YKI+RCPR RSHDWTECPYAHRGEKA RRDPR++ Y AVACPAFR+
Sbjct: 44  DDAIYGSDEFRMYAYKIKRCPRTRSHDWTECPYAHRGEKATRRDPRRYTYCAVACPAFRN 103

Query: 96  GSCPKGDFCEFAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHSPEELRPETKQKSSF 155
           G+C +GD CEFAHGVFEYWLHPARYRTRACNAG  CQRKVCFFAH+PE+LR       S 
Sbjct: 104 GACHRGDSCEFAHGVFEYWLHPARYRTRACNAGNLCQRKVCFFAHAPEQLR------QSE 163

Query: 156 SAHQQRVAVDAIESPPEEKNDGILEIPARVSGSGRKNERS------FGLDVTE------- 215
             H+ R A   + +      DG   +  R+   G    RS        LD  E       
Sbjct: 164 GKHRCRYAYRPVRARGGGNGDG---VTMRMDDEGYDTSRSPVRSGKDDLDSNEEKVLLKC 223

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BLAST of Cucsat.G16541 vs. ExPASy Swiss-Prot
Match: O82307 (Zinc finger CCCH domain-containing protein 23 OS=Arabidopsis thaliana OX=3702 GN=At2g25900 PE=2 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 1.4e-44
Identity = 87/174 (50.00%), Postives = 112/174 (64.37%), Query Frame = 0


Query: 11  DVYGHEFSVVSLPELTVGNLTEKTDD----TAVFSSDEFRMYSYKIQRCPRNRSHDWTEC 70
           D +   F  +   ELT  + +   D+    T  FSSDEFR+Y +KI+RC R RSHDWTEC
Sbjct: 53  DSFASLFRYLPSNELTNDSDSSSGDESSPLTDSFSSDEFRIYEFKIRRCARGRSHDWTEC 112

Query: 71  PYAHRGEKAQRRDPRQFNYTAVACPAFRSGSCPKGDFCEFAHGVFEYWLHPARYRTRACN 130
           P+AH GEKA+RRDPR+F+Y+  ACP FR GSC +GD CEF+HGVFE WLHP+RYRT+ C 
Sbjct: 113 PFAHPGEKARRRDPRKFHYSGTACPEFRKGSCRRGDSCEFSHGVFECWLHPSRYRTQPCK 172

Query: 131 AGRFCQRKVCFFAHSPEELR-------PETKQKSSFSAHQQRVAVDAIESPPEE 174
            G  C+R++CFFAH+ E+LR       P+    S  +     + V    SPP E
Sbjct: 173 DGTSCRRRICFFAHTTEQLRVLPCSLDPDLGFFSGLATSPTSILVSPSFSPPSE 226

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BLAST of Cucsat.G16541 vs. ExPASy Swiss-Prot
Match: Q9FU27 (Zinc finger CCCH domain-containing protein 2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0192000 PE=2 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 4.1e-44
Identity = 78/140 (55.71%), Postives = 102/140 (72.86%), Query Frame = 0


Query: 22  LPELTVGNLTEKTDDTA-------VFSSDEFRMYSYKIQRCPRNRSHDWTECPYAHRGEK 81
           LP   VG   ++ ++ A        ++ DEFRMY +K++RC R RSHDWTECP+AH GEK
Sbjct: 47  LPANDVGVGADEEEEAAAMAAAVDAYACDEFRMYEFKVRRCARGRSHDWTECPFAHPGEK 106

Query: 82  AQRRDPRQFNYTAVACPAFRSGSCPKGDFCEFAHGVFEYWLHPARYRTRACNAGRFCQRK 141
           A+RRDPR+++Y+  ACP FR G C +GD CE+AHGVFE WLHPARYRT+ C  G  C+R+
Sbjct: 107 ARRRDPRKYHYSGTACPDFRKGGCKRGDACEYAHGVFECWLHPARYRTQPCKDGTACRRR 166

Query: 142 VCFFAHSPEELRPETKQKSS 155
           VCFFAH+P++LR    Q+SS
Sbjct: 167 VCFFAHTPDQLRVLPAQQSS 186

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BLAST of Cucsat.G16541 vs. ExPASy Swiss-Prot
Match: Q9M0G2 (Zinc finger CCCH domain-containing protein 49 OS=Arabidopsis thaliana OX=3702 GN=At4g29190 PE=2 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 4.1e-44
Identity = 74/107 (69.16%), Postives = 87/107 (81.31%), Query Frame = 0


Query: 40  FSSDEFRMYSYKIQRCPRNRSHDWTECPYAHRGEKAQRRDPRQFNYTAVACPAFRSGSCP 99
           +S D FRMY +K++RC R RSHDWTECPYAH GEKA+RRDPR+++Y+  ACP FR G C 
Sbjct: 75  YSCDHFRMYDFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPDFRKGGCK 134

Query: 100 KGDFCEFAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHSPEELR 147
           KGD CEFAHGVFE WLHPARYRT+ C  G  C RK+CFFAHSP++LR
Sbjct: 135 KGDSCEFAHGVFECWLHPARYRTQPCKDGGNCLRKICFFAHSPDQLR 181

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BLAST of Cucsat.G16541 vs. ExPASy Swiss-Prot
Match: Q6L4N4 (Zinc finger CCCH domain-containing protein 35 OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0195200 PE=2 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 2.0e-43
Identity = 80/141 (56.74%), Postives = 99/141 (70.21%), Query Frame = 0


Query: 40  FSSDEFRMYSYKIQRCPRNRSHDWTECPYAHRGEKAQRRDPRQFNYTAVACPAFRSGSCP 99
           ++ DEFRMY +K++RC R RSHDWTECP+AH GEKA+RRDPR++ Y+  ACP FR G C 
Sbjct: 73  YACDEFRMYEFKVRRCARGRSHDWTECPFAHPGEKARRRDPRRYCYSGTACPDFRKGGCK 132

Query: 100 KGDFCEFAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHSPEELR---PETKQKSSFS 159
           +GD CEFAHGVFE WLHPARYRT+ C  G  C+R+VCFFAH+P++LR   P  +Q S+  
Sbjct: 133 RGDACEFAHGVFECWLHPARYRTQPCKDGTACRRRVCFFAHTPDQLRVLPPSQQQGSNSP 192

Query: 160 AHQQRVAVDAIESPPEEKNDG 178
                    A  SP  E  DG
Sbjct: 193 RGCGGGGAGAAASPLAESYDG 213

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BLAST of Cucsat.G16541 vs. NCBI nr
Match: KGN53171.2 (hypothetical protein Csa_015342 [Cucumis sativus])

HSP 1 Score: 454 bits (1168), Expect = 9.42e-161
Identity = 213/214 (99.53%), Postives = 213/214 (99.53%), Query Frame = 0


Query: 3   QGFVFGINDVYGHEFSVVSLPELTVGNLTEKTDDTAVFSSDEFRMYSYKIQRCPRNRSHD 62
            GFVFGINDVYGHEFSVVSLPELTVGNLTEKTDDTAVFSSDEFRMYSYKIQRCPRNRSHD
Sbjct: 46  HGFVFGINDVYGHEFSVVSLPELTVGNLTEKTDDTAVFSSDEFRMYSYKIQRCPRNRSHD 105

Query: 63  WTECPYAHRGEKAQRRDPRQFNYTAVACPAFRSGSCPKGDFCEFAHGVFEYWLHPARYRT 122
           WTECPYAHRGEKAQRRDPRQFNYTAVACPAFRSGSCPKGDFCEFAHGVFEYWLHPARYRT
Sbjct: 106 WTECPYAHRGEKAQRRDPRQFNYTAVACPAFRSGSCPKGDFCEFAHGVFEYWLHPARYRT 165

Query: 123 RACNAGRFCQRKVCFFAHSPEELRPETKQKSSFSAHQQRVAVDAIESPPEEKNDGILEIP 182
           RACNAGRFCQRKVCFFAHSPEELRPETKQKSSFSAHQQRVAVDAIESPPEEKNDGILEIP
Sbjct: 166 RACNAGRFCQRKVCFFAHSPEELRPETKQKSSFSAHQQRVAVDAIESPPEEKNDGILEIP 225

Query: 183 ARVSGSGRKNERSFGLDVTELELPHIEWISELLK 216
           ARVSGSGRKNERSFGLDVTELELPHIEWISELLK
Sbjct: 226 ARVSGSGRKNERSFGLDVTELELPHIEWISELLK 259

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BLAST of Cucsat.G16541 vs. NCBI nr
Match: XP_008454474.1 (PREDICTED: zinc finger CCCH domain-containing protein 54 [Cucumis melo] >KAA0044676.1 zinc finger CCCH domain-containing protein 54 [Cucumis melo var. makuwa] >TYK16906.1 zinc finger CCCH domain-containing protein 54 [Cucumis melo var. makuwa])

HSP 1 Score: 427 bits (1099), Expect = 6.58e-151
Identity = 197/216 (91.20%), Postives = 206/216 (95.37%), Query Frame = 0


Query: 1   MFQGFVFGINDVYGHEFSVVSLPELTVGNLTEKTDDTAVFSSDEFRMYSYKIQRCPRNRS 60
           MFQGFVFGINDVYGHEFS VSLPE+TVGNLTEK DDTAVFS+DEFRMYSYKIQRCPRNRS
Sbjct: 1   MFQGFVFGINDVYGHEFSAVSLPEVTVGNLTEKVDDTAVFSTDEFRMYSYKIQRCPRNRS 60

Query: 61  HDWTECPYAHRGEKAQRRDPRQFNYTAVACPAFRSGSCPKGDFCEFAHGVFEYWLHPARY 120
           HDWTECPYAHRGEKAQRRDPR+FNYTAVACPAFRSGSCPKGDFCEFAHGVFEYWLHPARY
Sbjct: 61  HDWTECPYAHRGEKAQRRDPRRFNYTAVACPAFRSGSCPKGDFCEFAHGVFEYWLHPARY 120

Query: 121 RTRACNAGRFCQRKVCFFAHSPEELRPETKQKSSFSAHQQRVAVDAIESPPEEKNDGILE 180
           RTRACNAGRFCQRKVCFFAHSPEELRPETK K + +A +QRVAV A+ESPPEEKNDGILE
Sbjct: 121 RTRACNAGRFCQRKVCFFAHSPEELRPETKHKFNLNAQRQRVAVAAVESPPEEKNDGILE 180

Query: 181 IPARVSGSGRKNERSFGLDVTELELPHIEWISELLK 216
           IPAR +G GRKNERSFG DV+ELELPHIEWISELLK
Sbjct: 181 IPARENGGGRKNERSFGFDVSELELPHIEWISELLK 216

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BLAST of Cucsat.G16541 vs. NCBI nr
Match: XP_038878131.1 (zinc finger CCCH domain-containing protein 54 [Benincasa hispida])

HSP 1 Score: 383 bits (983), Expect = 2.31e-133
Identity = 176/216 (81.48%), Postives = 194/216 (89.81%), Query Frame = 0


Query: 1   MFQGFVFGINDVYGHEFSVVSLPELTVGNLTEKTDDTAVFSSDEFRMYSYKIQRCPRNRS 60
           MFQGFVFGINDVYGHEFS VS+PE+         DDTA+FSSDEFRMY+YKIQRCPRNRS
Sbjct: 1   MFQGFVFGINDVYGHEFSAVSVPEI---------DDTAMFSSDEFRMYAYKIQRCPRNRS 60

Query: 61  HDWTECPYAHRGEKAQRRDPRQFNYTAVACPAFRSGSCPKGDFCEFAHGVFEYWLHPARY 120
           HDWTECPYAHRGEKAQRRDPR+FNYTAVACPAFRSGSCPKGDFCEFAHGVFEYWLHPARY
Sbjct: 61  HDWTECPYAHRGEKAQRRDPRRFNYTAVACPAFRSGSCPKGDFCEFAHGVFEYWLHPARY 120

Query: 121 RTRACNAGRFCQRKVCFFAHSPEELRPETKQKSSFSAHQQRVAVDAIESPPEEKNDGILE 180
           RTRACNAGRFCQRKVCFFAHSP+ELRPETKQK +F+AH+QRVAV  +ESP EEK DG  E
Sbjct: 121 RTRACNAGRFCQRKVCFFAHSPKELRPETKQKFNFNAHRQRVAVADVESPSEEKFDGASE 180

Query: 181 IPARVSGSGRKNERSFGLDVTELELPHIEWISELLK 216
           IP R +  GR+ +RSFGL+V+EL+LPH+EWISELL+
Sbjct: 181 IPVRGTSGGREKQRSFGLEVSELDLPHVEWISELLQ 207

[Close]

BLAST of Cucsat.G16541 vs. NCBI nr
Match: XP_023553083.1 (zinc finger CCCH domain-containing protein 54 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 358 bits (918), Expect = 2.74e-123
Identity = 165/218 (75.69%), Postives = 185/218 (84.86%), Query Frame = 0


Query: 1   MFQGFVFGINDVYGHEFSVVSLPELTVGN--LTEKTDDTAVFSSDEFRMYSYKIQRCPRN 60
           M QGFVFGINDVYGHEF+ V+LPE    N  LT +TDDTA+F+SDEFRMY++KIQRCP++
Sbjct: 1   MLQGFVFGINDVYGHEFTAVALPEFAYRNTRLTPQTDDTALFNSDEFRMYAFKIQRCPKS 60

Query: 61  RSHDWTECPYAHRGEKAQRRDPRQFNYTAVACPAFRSGSCPKGDFCEFAHGVFEYWLHPA 120
           RSHDWTECPYAHRGEKAQRRDPR+FNY+AVACPAFR+GSCPKGDFCEFAHGVFE+WLHP 
Sbjct: 61  RSHDWTECPYAHRGEKAQRRDPRRFNYSAVACPAFRTGSCPKGDFCEFAHGVFEFWLHPT 120

Query: 121 RYRTRACNAGRFCQRKVCFFAHSPEELRPETKQKSSFSAHQQRVAVDAIESPPEEKNDGI 180
           RYRTRACNAGRFCQRKVCFFAHSPEELRPETK K  F A   RVA+ A+E P E KNDG+
Sbjct: 121 RYRTRACNAGRFCQRKVCFFAHSPEELRPETKLKLHFDAPVARVALAALEYPVERKNDGV 180

Query: 181 LEIPARVSGSGRKNERSFGLDVTELELPHIEWISELLK 216
            EIP +    G  NERS  L+ +E ELPHIEWISELL+
Sbjct: 181 SEIPVKEISDGLGNERSSELEASEFELPHIEWISELLQ 218

[Close]

BLAST of Cucsat.G16541 vs. NCBI nr
Match: XP_022985508.1 (zinc finger CCCH domain-containing protein 54 [Cucurbita maxima])

HSP 1 Score: 357 bits (915), Expect = 7.85e-123
Identity = 163/218 (74.77%), Postives = 187/218 (85.78%), Query Frame = 0


Query: 1   MFQGFVFGINDVYGHEFSVVSLPELTVGN--LTEKTDDTAVFSSDEFRMYSYKIQRCPRN 60
           MFQGFVFGINDVYGHEF+ V+LPE    N  LT +T+DTA+F+SDEFRMY++KIQRCP++
Sbjct: 1   MFQGFVFGINDVYGHEFTAVALPEFAYRNTRLTPQTNDTALFNSDEFRMYAFKIQRCPKS 60

Query: 61  RSHDWTECPYAHRGEKAQRRDPRQFNYTAVACPAFRSGSCPKGDFCEFAHGVFEYWLHPA 120
           RSHDWTECPYAHRGEKAQRRDPR+FNY+AVACPAFR+GSCPKGDFCEFAHGVFE+WLHP 
Sbjct: 61  RSHDWTECPYAHRGEKAQRRDPRRFNYSAVACPAFRTGSCPKGDFCEFAHGVFEFWLHPT 120

Query: 121 RYRTRACNAGRFCQRKVCFFAHSPEELRPETKQKSSFSAHQQRVAVDAIESPPEEKNDGI 180
           RYRTRACNAGRFCQRKVCFFAHSPEELRPETK K  F+A  +R A+ A++ P E KNDG+
Sbjct: 121 RYRTRACNAGRFCQRKVCFFAHSPEELRPETKNKLHFAAPVERAALAALKYPVERKNDGV 180

Query: 181 LEIPARVSGSGRKNERSFGLDVTELELPHIEWISELLK 216
            EIP +    G  NERS  L+ +E ELPHIEWISELL+
Sbjct: 181 SEIPVKEISDGLGNERSSELEASESELPHIEWISELLQ 218

[Close]

BLAST of Cucsat.G16541 vs. ExPASy TrEMBL
Match: A0A5A7TRB5 (Zinc finger CCCH domain-containing protein 54 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold130G00410 PE=4 SV=1)

HSP 1 Score: 427 bits (1099), Expect = 3.19e-151
Identity = 197/216 (91.20%), Postives = 206/216 (95.37%), Query Frame = 0


Query: 1   MFQGFVFGINDVYGHEFSVVSLPELTVGNLTEKTDDTAVFSSDEFRMYSYKIQRCPRNRS 60
           MFQGFVFGINDVYGHEFS VSLPE+TVGNLTEK DDTAVFS+DEFRMYSYKIQRCPRNRS
Sbjct: 1   MFQGFVFGINDVYGHEFSAVSLPEVTVGNLTEKVDDTAVFSTDEFRMYSYKIQRCPRNRS 60

Query: 61  HDWTECPYAHRGEKAQRRDPRQFNYTAVACPAFRSGSCPKGDFCEFAHGVFEYWLHPARY 120
           HDWTECPYAHRGEKAQRRDPR+FNYTAVACPAFRSGSCPKGDFCEFAHGVFEYWLHPARY
Sbjct: 61  HDWTECPYAHRGEKAQRRDPRRFNYTAVACPAFRSGSCPKGDFCEFAHGVFEYWLHPARY 120

Query: 121 RTRACNAGRFCQRKVCFFAHSPEELRPETKQKSSFSAHQQRVAVDAIESPPEEKNDGILE 180
           RTRACNAGRFCQRKVCFFAHSPEELRPETK K + +A +QRVAV A+ESPPEEKNDGILE
Sbjct: 121 RTRACNAGRFCQRKVCFFAHSPEELRPETKHKFNLNAQRQRVAVAAVESPPEEKNDGILE 180

Query: 181 IPARVSGSGRKNERSFGLDVTELELPHIEWISELLK 216
           IPAR +G GRKNERSFG DV+ELELPHIEWISELLK
Sbjct: 181 IPARENGGGRKNERSFGFDVSELELPHIEWISELLK 216

[Close]

BLAST of Cucsat.G16541 vs. ExPASy TrEMBL
Match: A0A1S3BYP8 (zinc finger CCCH domain-containing protein 54 OS=Cucumis melo OX=3656 GN=LOC103494870 PE=4 SV=1)

HSP 1 Score: 427 bits (1099), Expect = 3.19e-151
Identity = 197/216 (91.20%), Postives = 206/216 (95.37%), Query Frame = 0


Query: 1   MFQGFVFGINDVYGHEFSVVSLPELTVGNLTEKTDDTAVFSSDEFRMYSYKIQRCPRNRS 60
           MFQGFVFGINDVYGHEFS VSLPE+TVGNLTEK DDTAVFS+DEFRMYSYKIQRCPRNRS
Sbjct: 1   MFQGFVFGINDVYGHEFSAVSLPEVTVGNLTEKVDDTAVFSTDEFRMYSYKIQRCPRNRS 60

Query: 61  HDWTECPYAHRGEKAQRRDPRQFNYTAVACPAFRSGSCPKGDFCEFAHGVFEYWLHPARY 120
           HDWTECPYAHRGEKAQRRDPR+FNYTAVACPAFRSGSCPKGDFCEFAHGVFEYWLHPARY
Sbjct: 61  HDWTECPYAHRGEKAQRRDPRRFNYTAVACPAFRSGSCPKGDFCEFAHGVFEYWLHPARY 120

Query: 121 RTRACNAGRFCQRKVCFFAHSPEELRPETKQKSSFSAHQQRVAVDAIESPPEEKNDGILE 180
           RTRACNAGRFCQRKVCFFAHSPEELRPETK K + +A +QRVAV A+ESPPEEKNDGILE
Sbjct: 121 RTRACNAGRFCQRKVCFFAHSPEELRPETKHKFNLNAQRQRVAVAAVESPPEEKNDGILE 180

Query: 181 IPARVSGSGRKNERSFGLDVTELELPHIEWISELLK 216
           IPAR +G GRKNERSFG DV+ELELPHIEWISELLK
Sbjct: 181 IPARENGGGRKNERSFGFDVSELELPHIEWISELLK 216

[Close]

BLAST of Cucsat.G16541 vs. ExPASy TrEMBL
Match: A0A6J1JDT4 (zinc finger CCCH domain-containing protein 54 OS=Cucurbita maxima OX=3661 GN=LOC111483496 PE=4 SV=1)

HSP 1 Score: 357 bits (915), Expect = 3.80e-123
Identity = 163/218 (74.77%), Postives = 187/218 (85.78%), Query Frame = 0


Query: 1   MFQGFVFGINDVYGHEFSVVSLPELTVGN--LTEKTDDTAVFSSDEFRMYSYKIQRCPRN 60
           MFQGFVFGINDVYGHEF+ V+LPE    N  LT +T+DTA+F+SDEFRMY++KIQRCP++
Sbjct: 1   MFQGFVFGINDVYGHEFTAVALPEFAYRNTRLTPQTNDTALFNSDEFRMYAFKIQRCPKS 60

Query: 61  RSHDWTECPYAHRGEKAQRRDPRQFNYTAVACPAFRSGSCPKGDFCEFAHGVFEYWLHPA 120
           RSHDWTECPYAHRGEKAQRRDPR+FNY+AVACPAFR+GSCPKGDFCEFAHGVFE+WLHP 
Sbjct: 61  RSHDWTECPYAHRGEKAQRRDPRRFNYSAVACPAFRTGSCPKGDFCEFAHGVFEFWLHPT 120

Query: 121 RYRTRACNAGRFCQRKVCFFAHSPEELRPETKQKSSFSAHQQRVAVDAIESPPEEKNDGI 180
           RYRTRACNAGRFCQRKVCFFAHSPEELRPETK K  F+A  +R A+ A++ P E KNDG+
Sbjct: 121 RYRTRACNAGRFCQRKVCFFAHSPEELRPETKNKLHFAAPVERAALAALKYPVERKNDGV 180

Query: 181 LEIPARVSGSGRKNERSFGLDVTELELPHIEWISELLK 216
            EIP +    G  NERS  L+ +E ELPHIEWISELL+
Sbjct: 181 SEIPVKEISDGLGNERSSELEASESELPHIEWISELLQ 218

[Close]

BLAST of Cucsat.G16541 vs. ExPASy TrEMBL
Match: A0A6J1E9W0 (zinc finger CCCH domain-containing protein 54 OS=Cucurbita moschata OX=3662 GN=LOC111430684 PE=4 SV=1)

HSP 1 Score: 356 bits (914), Expect = 5.40e-123
Identity = 164/218 (75.23%), Postives = 184/218 (84.40%), Query Frame = 0


Query: 1   MFQGFVFGINDVYGHEFSVVSLPELTVGN--LTEKTDDTAVFSSDEFRMYSYKIQRCPRN 60
           M QGFVFGINDVYGHEF+ V+LPE    N  LT +TDDTA+F+SDEFRMY++KIQRCP++
Sbjct: 1   MLQGFVFGINDVYGHEFTAVALPEFAYRNTRLTPQTDDTALFNSDEFRMYAFKIQRCPKS 60

Query: 61  RSHDWTECPYAHRGEKAQRRDPRQFNYTAVACPAFRSGSCPKGDFCEFAHGVFEYWLHPA 120
           RSHDWTECPYAHRGEKAQRRDPR+FNY+AVACPAFR+GSCPKGDFCEFAHGVFE+WLHP 
Sbjct: 61  RSHDWTECPYAHRGEKAQRRDPRRFNYSAVACPAFRTGSCPKGDFCEFAHGVFEFWLHPT 120

Query: 121 RYRTRACNAGRFCQRKVCFFAHSPEELRPETKQKSSFSAHQQRVAVDAIESPPEEKNDGI 180
           RYRTRACNAGRFCQRKVCFFAHSPEELRPETK K  F A   R A+ A+E P E KNDG+
Sbjct: 121 RYRTRACNAGRFCQRKVCFFAHSPEELRPETKLKLHFDAPVARAALAALEYPVERKNDGV 180

Query: 181 LEIPARVSGSGRKNERSFGLDVTELELPHIEWISELLK 216
            EIP +    G  NERS  L+ +E ELPHIEWISELL+
Sbjct: 181 SEIPVKEISDGLGNERSSELEASEFELPHIEWISELLQ 218

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BLAST of Cucsat.G16541 vs. ExPASy TrEMBL
Match: A0A6J1CJI1 (zinc finger CCCH domain-containing protein 54 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111011570 PE=4 SV=1)

HSP 1 Score: 305 bits (781), Expect = 9.67e-103
Identity = 147/224 (65.62%), Postives = 175/224 (78.12%), Query Frame = 0


Query: 1   MFQGFVFGIND-VYGHEFSVVSLPELTVGNLTEKTDDTA-VFSSDEFRMYSYKIQRCPRN 60
           MFQGF  GIN+ V+ H+FS           L E+ +D A VF SDEFRM++YKIQRCPR 
Sbjct: 2   MFQGFFPGINNAVFDHDFSGCH-------QLMEQVEDAAAVFGSDEFRMFAYKIQRCPRT 61

Query: 61  RSHDWTECPYAHRGEKAQRRDPRQFNYTAVACPAFRSGSCPKGDFCEFAHGVFEYWLHPA 120
           RSHDWTECPYAHRGEKAQRRD R+FNY+AVACPAFR+G+CP+GDFCE+AHGVFEYWLHPA
Sbjct: 62  RSHDWTECPYAHRGEKAQRRDLRRFNYSAVACPAFRNGNCPRGDFCEYAHGVFEYWLHPA 121

Query: 121 RYRTRACNAGRFCQRKVCFFAHSPEELRPETKQKSSFSAHQQRVAVDAIESPPEEKNDGI 180
           RYRTRACNAGRFCQRKVCFFAH+PE+LR ETKQK  F+AH+ RV V A+E+P E KND +
Sbjct: 122 RYRTRACNAGRFCQRKVCFFAHTPEQLRSETKQKFHFNAHRTRVPVVAVEAPLESKNDDV 181

Query: 181 LEIPARVSG------SGRKNERSFGLDVTELELPHIEWISELLK 216
             I   + G        RKN+R+FG +V++ +LPHI WI ELL+
Sbjct: 182 SNIVNGLKGLTVREIRERKNDRNFGWEVSDSDLPHIGWIRELLQ 218

The following BLAST results are available for this feature:

BLAST of Cucsat.G16541 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O65036	2.3e-55	52.86	Zinc finger CCCH domain-containing protein 54 OS=Arabidopsis thaliana OX=3702 GN...	[more]
O82307	1.4e-44	50.00	Zinc finger CCCH domain-containing protein 23 OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q9FU27	4.1e-44	55.71	Zinc finger CCCH domain-containing protein 2 OS=Oryza sativa subsp. japonica OX=...	[more]
Q9M0G2	4.1e-44	69.16	Zinc finger CCCH domain-containing protein 49 OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q6L4N4	2.0e-43	56.74	Zinc finger CCCH domain-containing protein 35 OS=Oryza sativa subsp. japonica OX...	[more]

BLAST of Cucsat.G16541 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN53171.2	9.42e-161	99.53	hypothetical protein Csa_015342 [Cucumis sativus]	[more]
XP_008454474.1	6.58e-151	91.20	PREDICTED: zinc finger CCCH domain-containing protein 54 [Cucumis melo] >KAA0044...	[more]
XP_038878131.1	2.31e-133	81.48	zinc finger CCCH domain-containing protein 54 [Benincasa hispida]	[more]
XP_023553083.1	2.74e-123	75.69	zinc finger CCCH domain-containing protein 54 [Cucurbita pepo subsp. pepo]	[more]
XP_022985508.1	7.85e-123	74.77	zinc finger CCCH domain-containing protein 54 [Cucurbita maxima]	[more]

BLAST of Cucsat.G16541 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TRB5	3.19e-151	91.20	Zinc finger CCCH domain-containing protein 54 OS=Cucumis melo var. makuwa OX=119...	[more]
A0A1S3BYP8	3.19e-151	91.20	zinc finger CCCH domain-containing protein 54 OS=Cucumis melo OX=3656 GN=LOC1034...	[more]
A0A6J1JDT4	3.80e-123	74.77	zinc finger CCCH domain-containing protein 54 OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A6J1E9W0	5.40e-123	75.23	zinc finger CCCH domain-containing protein 54 OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A6J1CJI1	9.67e-103	65.63	zinc finger CCCH domain-containing protein 54 isoform X1 OS=Momordica charantia ...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000571	Zinc finger, CCCH-type	SMART	SM00356	c3hfinal6	coord: 84..110 e-value: 1.2E-5 score: 34.7 coord: 119..142 e-value: 13.0 score: 7.5
IPR000571	Zinc finger, CCCH-type	PFAM	PF00642	zf-CCCH	coord: 88..109 e-value: 1.2E-5 score: 25.1
IPR000571	Zinc finger, CCCH-type	PROSITE	PS50103	ZF_C3H1	coord: 84..111 score: 13.196945
None	No IPR available	GENE3D	4.10.1000.10		coord: 80..157 e-value: 2.1E-8 score: 35.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 148..178
None	No IPR available	PANTHER	PTHR14493:SF109	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 54	coord: 33..165
None	No IPR available	PANTHER	PTHR14493	UNKEMPT FAMILY MEMBER	coord: 33..165
IPR036855	Zinc finger, CCCH-type superfamily	SUPERFAMILY	90229	CCCH zinc finger	coord: 83..114

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsat.G16541.T1	Cucsat.G16541.T1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009910	negative regulation of flower development
biological_process	GO:0006807	nitrogen compound metabolic process
biological_process	GO:0044238	primary metabolic process
biological_process	GO:0006349	regulation of gene expression by genetic imprinting
cellular_component	GO:0005634	nucleus
molecular_function	GO:0031490	chromatin DNA binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0000976	transcription cis-regulatory region binding