Cucsat.G16537 (gene) Cucumber (B10) v3

Overview


Name	Cucsat.G16537
Type	gene
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	GTP-binding protein YPTM2-like isoform X2
Location	ctg24: 259829 .. 262406 (+)
RNA-Seq Expression	Cucsat.G16537
Synteny	Cucsat.G16537

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AAATTTATACAAATTTAGATTAGAGAAAAGTCAAGTTAATTTACCAATTGAAGTGCACGTTCTTCATTTCCCGGCCACATATCAAACAAATTAGTTGCAAATCAAAAGCCGATTCTTCTTGCTTCGGCAAAATTTTCTCCCTGCAGTTACCACCACATCTCACGCACCAACACACAAACAGTATCACTCCTCAGCCTCTTCCATGTTCTTCAGATCTCCTCATCGAGAAAGAGAATTTTACAGAAAAGGGAAAAGAGAATGTACCGATCAGTGAGCTGGAACCGATTCTCCGACGAATACTACTCGCATTCGGCCCCGTCCTCGAAGCCAGGGCAGTCACTGCGACTATCGTCGTCGTTTGATCATGGGAATAATGAACTTCCAACGAACGATCCGGTGTCGGAAATGGTGAAGCGAGAGAAAGCGCGAGTGAAGTTTGCTGAAACTGCTGTTCATGTGATTCCGTTCGTTTTGCTAATCTGCGCCATTGTTCTGTGGTTCTTCTCCAATCCAGGTAAGTGAAAGTGAAAGTGAAGATGGTAATGGTAATGATTCTGCTTCTTGGAAGCTTGCGTTCCCGCCATTGATGATTGATTTTCATGAAAATTGAATGGAAATTCCCTCATTTTTTAACTCAAACTTAATTCCCTAATCCAAACAAATTAATTCATCACTTTCACTTCTCATAACACAGAAATATATACCGACTTGAAAATTAAGTAAATAAATGTGTAATATATTCCTAACTCTACCGAATTAACCAAAATATATTAAAATATGACACCATCCCATTTTCGAATTTGGTAATTATCATTTATGACCATTTTACGAATAATAATTGAGAATATAAGCAACATTTGAAAAAAAAATAGCAAAACTATCGTTAATCTATAAGTTATAGACCAATATTACAACATGCTCTATGATATTATTTATAGAATTTAGCAAATTTTATTATATTTGTAATTTTTAAAAATTGTTACTACATGTGCCTGTTATTTTGCTAACAAGTGTATCCCTCTCAAATTTTTACGTTTTGGTCAAAAATACAAAATATTTACCAAACTTTTTAAATTTCTTACAAATCTCTTTTGTATAAATAAATTTGAGTTTTATAAATAAATAAAATGATATTTTTTAAAATAGCAAAATAAATTAAAATATTCAAAATTTTGGATTCTATTACAATCTTGAATTACTGTAGAATTTAAAAATTTTACTGAAACTATTCAGGGTAGCAAAATTTTAATCAACCAAAATTCCAAAATATCTCTTTTTTTCTATAAAATATAAATACTTTTTATTTACTTTCAATTTTCTTCGATTTATGTAAATTTTCTTTTCAAAATTCACCTGAGACATAATTGTATTAAATTGTAAAATTATTTAATTCTTTTTGTTATATTTATAAATTAAACAGGTAAAATTTTAATTTTATGTTTAAATGTTAGAGGTTATATCTAGTTAATTTCAAAATTAGTGTTTAATGTTTTTTTCTTTTTCTTTTTTTCTTGAAAAAATTGATTTTTTACAAAGGTAGGTAAGATTATAATAGAAATTTATTTGTTTGGTTATTTACTTATTGTTGTAAACCTTTTCAAATTTTAAGTTTTTTTTTTTTTAGAAAATTAATAAAAGTGTTTTTTTTTTCCTTTTGAAGATTAGCTTAAAGTTGAATGTAAATTTAGAAGAAGAAAAATGGAAAATGTATTAAGGAATATATGAGATAGCAAATTAACTATCTATATGTTTATAACAAAACAATGAAAAGGATTATTGGATTGACAATACTATTTTTCATTTTCCATTGAATAAAAAATCATTTTAAAAAATTTAAATATCATCTAATCATTTGAAAAAAATCAAACATTCAATATTTTATGATTTTATAATCCTATTTTCTAAAACTTATAAACTAAAATGTACATTTTGAAAATTCGATGAACTAATGGATCTATTGTTATAAACTTGAAGACTAAAAATATTCAATTTTCAAAAGCACATATTCAACGGATCTTGAGAACTAAAAACATAGTCTTTCATAGATATTTTATTTAGATAAATGAATTCTTAGTTAATTTGATGTACACAATGTTCTCTATGATTGTTTTGATCTGTTTGAGTTTTTTTTTTTTTTTTTTTTTTTGTGTTTACTCTGTGTGGACATAAGTAGATGTGGAGATGAGAGGAGCAACGACAACGGGCATAATAAGGAGCCTGACACTCGAAGGAGAATTTGAGAGTACCCAAACGGAGGCTCTTCCTACTTTCGATGGACCTTTTTCTGACGCTTCAAGACTTCATGATACCATTTTTATATGATCGGTTCAATTAGAGGTTAAATTAACTTTATTATAAGCTCAACGATTTTTGAGCCCATAAAGTTCATTCATTATATTTTTATATTAGTATATACAACAAAGTCATTTATTGACTATCTATTGTGATATACTGGTATCATGTTTCATCCCTCCTCGATGGACTAAAGTTCATTTCTTTAAATTGTTGTTTTTTTTTAATGCTCTACTATATATCATATTAATCAAGAAAACACATGTAGATAGGTAGTAAATTAAAA

Coding sequence (CDS)

ATGTACCGATCAGTGAGCTGGAACCGATTCTCCGACGAATACTACTCGCATTCGGCCCCGTCCTCGAAGCCAGGGCAGTCACTGCGACTATCGTCGTCGTTTGATCATGGGAATAATGAACTTCCAACGAACGATCCGGTGTCGGAAATGGTGAAGCGAGAGAAAGCGCGAGTGAAGTTTGCTGAAACTGCTGTTCATGTGATTCCGTTCGTTTTGCTAATCTGCGCCATTGTTCTGTGGTTCTTCTCCAATCCAGATGTGGAGATGAGAGGAGCAACGACAACGGGCATAATAAGGAGCCTGACACTCGAAGGAGAATTTGAGAGTACCCAAACGGAGGCTCTTCCTACTTTCGATGGACCTTTTTCTGACGCTTCAAGACTTCATGATACCATTTTTATATGA

Protein sequence

MYRSVSWNRFSDEYYSHSAPSSKPGQSLRLSSSFDHGNNELPTNDPVSEMVKREKARVKFAETAVHVIPFVLLICAIVLWFFSNPDVEMRGATTTGIIRSLTLEGEFESTQTEALPTFDGPFSDASRLHDTIFI

Homology

[Close]

BLAST of Cucsat.G16537 vs. NCBI nr
Match: XP_011653100.1 (uncharacterized protein LOC105435175 [Cucumis sativus] >KGN53176.1 hypothetical protein Csa_015195 [Cucumis sativus])

HSP 1 Score: 268 bits (686), Expect = 1.25e-90
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 0


Query: 1   MYRSVSWNRFSDEYYSHSAPSSKPGQSLRLSSSFDHGNNELPTNDPVSEMVKREKARVKF 60
           MYRSVSWNRFSDEYYSHSAPSSKPGQSLRLSSSFDHGNNELPTNDPVSEMVKREKARVKF
Sbjct: 1   MYRSVSWNRFSDEYYSHSAPSSKPGQSLRLSSSFDHGNNELPTNDPVSEMVKREKARVKF 60

Query: 61  AETAVHVIPFVLLICAIVLWFFSNPDVEMRGATTTGIIRSLTLEGEFESTQTEALPTFDG 120
           AETAVHVIPFVLLICAIVLWFFSNPDVEMRGATTTGIIRSLTLEGEFESTQTEALPTFDG
Sbjct: 61  AETAVHVIPFVLLICAIVLWFFSNPDVEMRGATTTGIIRSLTLEGEFESTQTEALPTFDG 120

Query: 121 PFSDASRLHDTIFI 134
           PFSDASRLHDTIFI
Sbjct: 121 PFSDASRLHDTIFI 134

[Close]

BLAST of Cucsat.G16537 vs. NCBI nr
Match: XP_016901475.1 (PREDICTED: uncharacterized protein LOC103494452 [Cucumis melo])

HSP 1 Score: 197 bits (502), Expect = 2.02e-62
Identity = 105/134 (78.36%), Postives = 108/134 (80.60%), Query Frame = 0


Query: 1   MYRSVSWNRFSDEYYSHSAPSSKPGQSLRLSSSFDHGNNELPTNDPVSEMVKREKARVKF 60
           MYRS SWNRFSDEYYSHSAPSSKPGQSLRLSSSFD GNNELP NDPV+EMVKREKARVKF
Sbjct: 1   MYRSASWNRFSDEYYSHSAPSSKPGQSLRLSSSFDQGNNELPMNDPVTEMVKREKARVKF 60

Query: 61  AETAVHVIPFVLLICAIVLWFFSNP--DVEMRGATTTGIIRSLTLEGEFESTQTEALP-T 120
           AE AVHVIPFVLLIC IVLWFFSNP  DVEMRG T    I  LTLEGE ESTQ E  P T
Sbjct: 61  AENAVHVIPFVLLICGIVLWFFSNPEVDVEMRGGTMRSTIVGLTLEGEIESTQKEETPPT 120

Query: 121 FDGPFSDASRLHDT 131
            + P S +S  H T
Sbjct: 121 LNRPLSHSSEPHHT 134

[Close]

BLAST of Cucsat.G16537 vs. NCBI nr
Match: KAA0044682.1 (putative transmembrane protein [Cucumis melo var. makuwa] >TYK16901.1 putative transmembrane protein [Cucumis melo var. makuwa])

HSP 1 Score: 160 bits (406), Expect = 1.36e-48
Identity = 79/85 (92.94%), Postives = 80/85 (94.12%), Query Frame = 0


Query: 1  MYRSVSWNRFSDEYYSHSAPSSKPGQSLRLSSSFDHGNNELPTNDPVSEMVKREKARVKF 60
          MYRS SWNRFSDEYYSHSAPSSKPGQSLRLSSSFD GNNELP NDPV+EMVKREKARVKF
Sbjct: 1  MYRSASWNRFSDEYYSHSAPSSKPGQSLRLSSSFDQGNNELPMNDPVTEMVKREKARVKF 60

Query: 61 AETAVHVIPFVLLICAIVLWFFSNP 85
          AE AVHVIPFVLLIC IVLWFFSNP
Sbjct: 61 AENAVHVIPFVLLICGIVLWFFSNP 85

[Close]

BLAST of Cucsat.G16537 vs. NCBI nr
Match: XP_022140815.1 (uncharacterized protein LOC111011394 isoform X1 [Momordica charantia])

HSP 1 Score: 155 bits (393), Expect = 7.11e-46
Identity = 87/115 (75.65%), Postives = 92/115 (80.00%), Query Frame = 0


Query: 1   MYRSVSWNRFSDEYYSHSAP----SSKPGQSLRLSSSFDHGNNELPTNDPVSEMVKREKA 60
           MYRSVSWNRFSDEYYS S+P    SSKP Q+L LSSSF  G NELPTNDPV+ MVKREKA
Sbjct: 1   MYRSVSWNRFSDEYYSRSSPALVLSSKPDQALGLSSSF--GANELPTNDPVAVMVKREKA 60

Query: 61  RVKFAETAVHVIPFVLLICAIVLWFFSNP--DVEMRGATTTGIIRSLTLEGEFES 109
           RVKFAETAVHVIP VLL+CAIVLWFFSNP  DV MRG T    I  LT+EGE ES
Sbjct: 61  RVKFAETAVHVIPLVLLLCAIVLWFFSNPEIDVGMRGETIAARIEGLTIEGELES 113

[Close]

BLAST of Cucsat.G16537 vs. NCBI nr
Match: XP_022986879.1 (uncharacterized protein LOC111484483 [Cucurbita maxima])

HSP 1 Score: 137 bits (345), Expect = 1.28e-38
Identity = 81/129 (62.79%), Postives = 90/129 (69.77%), Query Frame = 0


Query: 1   MYRSVSWNRFSDEYYSHSAPS----SKPGQSLRLSSSFDHGNNELPTNDPVSEMVKREKA 60
           M+RSVSWNRFSDEYYS S+PS    S P Q+LRL+SSFD   NE PT+ P  EMVKREKA
Sbjct: 1   MHRSVSWNRFSDEYYSSSSPSPALSSTPSQALRLTSSFD--GNEQPTSYPAEEMVKREKA 60

Query: 61  RVKFAETAVHVIPFVLLICAIVLWFFSNP--DVEMRGATTTGIIRSLTLEGEFE----ST 119
           RVKFA TAVHVIP VL++CAI+LWFFSNP  DV MR       I  L +EGE E      
Sbjct: 61  RVKFAATAVHVIPLVLVLCAILLWFFSNPEIDVGMRLDPMAARIEGLNVEGEIEREFGGA 120

[Close]

BLAST of Cucsat.G16537 vs. ExPASy TrEMBL
Match: A0A0A0KZ80 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G025085 PE=4 SV=1)

HSP 1 Score: 268 bits (686), Expect = 6.04e-91
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 0


Query: 1   MYRSVSWNRFSDEYYSHSAPSSKPGQSLRLSSSFDHGNNELPTNDPVSEMVKREKARVKF 60
           MYRSVSWNRFSDEYYSHSAPSSKPGQSLRLSSSFDHGNNELPTNDPVSEMVKREKARVKF
Sbjct: 1   MYRSVSWNRFSDEYYSHSAPSSKPGQSLRLSSSFDHGNNELPTNDPVSEMVKREKARVKF 60

Query: 61  AETAVHVIPFVLLICAIVLWFFSNPDVEMRGATTTGIIRSLTLEGEFESTQTEALPTFDG 120
           AETAVHVIPFVLLICAIVLWFFSNPDVEMRGATTTGIIRSLTLEGEFESTQTEALPTFDG
Sbjct: 61  AETAVHVIPFVLLICAIVLWFFSNPDVEMRGATTTGIIRSLTLEGEFESTQTEALPTFDG 120

Query: 121 PFSDASRLHDTIFI 134
           PFSDASRLHDTIFI
Sbjct: 121 PFSDASRLHDTIFI 134

[Close]

BLAST of Cucsat.G16537 vs. ExPASy TrEMBL
Match: A0A1S4E0H1 (uncharacterized protein LOC103494452 OS=Cucumis melo OX=3656 GN=LOC103494452 PE=4 SV=1)

HSP 1 Score: 197 bits (502), Expect = 9.77e-63
Identity = 105/134 (78.36%), Postives = 108/134 (80.60%), Query Frame = 0


Query: 1   MYRSVSWNRFSDEYYSHSAPSSKPGQSLRLSSSFDHGNNELPTNDPVSEMVKREKARVKF 60
           MYRS SWNRFSDEYYSHSAPSSKPGQSLRLSSSFD GNNELP NDPV+EMVKREKARVKF
Sbjct: 1   MYRSASWNRFSDEYYSHSAPSSKPGQSLRLSSSFDQGNNELPMNDPVTEMVKREKARVKF 60

Query: 61  AETAVHVIPFVLLICAIVLWFFSNP--DVEMRGATTTGIIRSLTLEGEFESTQTEALP-T 120
           AE AVHVIPFVLLIC IVLWFFSNP  DVEMRG T    I  LTLEGE ESTQ E  P T
Sbjct: 61  AENAVHVIPFVLLICGIVLWFFSNPEVDVEMRGGTMRSTIVGLTLEGEIESTQKEETPPT 120

Query: 121 FDGPFSDASRLHDT 131
            + P S +S  H T
Sbjct: 121 LNRPLSHSSEPHHT 134

[Close]

BLAST of Cucsat.G16537 vs. ExPASy TrEMBL
Match: A0A5A7TMZ1 (Putative transmembrane protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold130G00350 PE=4 SV=1)

HSP 1 Score: 160 bits (406), Expect = 6.58e-49
Identity = 79/85 (92.94%), Postives = 80/85 (94.12%), Query Frame = 0


Query: 1  MYRSVSWNRFSDEYYSHSAPSSKPGQSLRLSSSFDHGNNELPTNDPVSEMVKREKARVKF 60
          MYRS SWNRFSDEYYSHSAPSSKPGQSLRLSSSFD GNNELP NDPV+EMVKREKARVKF
Sbjct: 1  MYRSASWNRFSDEYYSHSAPSSKPGQSLRLSSSFDQGNNELPMNDPVTEMVKREKARVKF 60

Query: 61 AETAVHVIPFVLLICAIVLWFFSNP 85
          AE AVHVIPFVLLIC IVLWFFSNP
Sbjct: 61 AENAVHVIPFVLLICGIVLWFFSNP 85

[Close]

BLAST of Cucsat.G16537 vs. ExPASy TrEMBL
Match: A0A6J1CG79 (uncharacterized protein LOC111011394 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111011394 PE=4 SV=1)

HSP 1 Score: 155 bits (393), Expect = 3.44e-46
Identity = 87/115 (75.65%), Postives = 92/115 (80.00%), Query Frame = 0


Query: 1   MYRSVSWNRFSDEYYSHSAP----SSKPGQSLRLSSSFDHGNNELPTNDPVSEMVKREKA 60
           MYRSVSWNRFSDEYYS S+P    SSKP Q+L LSSSF  G NELPTNDPV+ MVKREKA
Sbjct: 1   MYRSVSWNRFSDEYYSRSSPALVLSSKPDQALGLSSSF--GANELPTNDPVAVMVKREKA 60

Query: 61  RVKFAETAVHVIPFVLLICAIVLWFFSNP--DVEMRGATTTGIIRSLTLEGEFES 109
           RVKFAETAVHVIP VLL+CAIVLWFFSNP  DV MRG T    I  LT+EGE ES
Sbjct: 61  RVKFAETAVHVIPLVLLLCAIVLWFFSNPEIDVGMRGETIAARIEGLTIEGELES 113

[Close]

BLAST of Cucsat.G16537 vs. ExPASy TrEMBL
Match: A0A6J1JHB4 (uncharacterized protein LOC111484483 OS=Cucurbita maxima OX=3661 GN=LOC111484483 PE=4 SV=1)

HSP 1 Score: 137 bits (345), Expect = 6.17e-39
Identity = 81/129 (62.79%), Postives = 90/129 (69.77%), Query Frame = 0


Query: 1   MYRSVSWNRFSDEYYSHSAPS----SKPGQSLRLSSSFDHGNNELPTNDPVSEMVKREKA 60
           M+RSVSWNRFSDEYYS S+PS    S P Q+LRL+SSFD   NE PT+ P  EMVKREKA
Sbjct: 1   MHRSVSWNRFSDEYYSSSSPSPALSSTPSQALRLTSSFD--GNEQPTSYPAEEMVKREKA 60

Query: 61  RVKFAETAVHVIPFVLLICAIVLWFFSNP--DVEMRGATTTGIIRSLTLEGEFE----ST 119
           RVKFA TAVHVIP VL++CAI+LWFFSNP  DV MR       I  L +EGE E      
Sbjct: 61  RVKFAATAVHVIPLVLVLCAILLWFFSNPEIDVGMRLDPMAARIEGLNVEGEIEREFGGA 120

The following BLAST results are available for this feature:

BLAST of Cucsat.G16537 vs.


Match Name	E-value	Identity	Description

BLAST of Cucsat.G16537 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011653100.1	1.25e-90	100.00	uncharacterized protein LOC105435175 [Cucumis sativus] >KGN53176.1 hypothetical ...	[more]
XP_016901475.1	2.02e-62	78.36	PREDICTED: uncharacterized protein LOC103494452 [Cucumis melo]	[more]
KAA0044682.1	1.36e-48	92.94	putative transmembrane protein [Cucumis melo var. makuwa] >TYK16901.1 putative t...	[more]
XP_022140815.1	7.11e-46	75.65	uncharacterized protein LOC111011394 isoform X1 [Momordica charantia]	[more]
XP_022986879.1	1.28e-38	62.79	uncharacterized protein LOC111484483 [Cucurbita maxima]	[more]

BLAST of Cucsat.G16537 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KZ80	6.04e-91	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G025085 PE=4 SV=1	[more]
A0A1S4E0H1	9.77e-63	78.36	uncharacterized protein LOC103494452 OS=Cucumis melo OX=3656 GN=LOC103494452 PE=...	[more]
A0A5A7TMZ1	6.58e-49	92.94	Putative transmembrane protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A6J1CG79	3.44e-46	75.65	uncharacterized protein LOC111011394 isoform X1 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1JHB4	6.17e-39	62.79	uncharacterized protein LOC111484483 OS=Cucurbita maxima OX=3661 GN=LOC111484483...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 14..48
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 14..45
None	No IPR available	PANTHER	PTHR34189	TRANSMEMBRANE PROTEIN	coord: 1..126
None	No IPR available	PANTHER	PTHR34189:SF4	TRANSMEMBRANE PROTEIN	coord: 1..126

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsat.G16537.T1	Cucsat.G16537.T1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane