Cucsat.G16530 (gene) Cucumber (B10) v3

Overview


Name	Cucsat.G16530
Type	gene
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	Tubulin-folding cofactor C
Location	ctg24: 98783 .. 100692 (+)
RNA-Seq Expression	Cucsat.G16530
Synteny	Cucsat.G16530

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTACTCTTTGCCCTCATACGAGGTACGAGCTTCACTCAAATCCATTTCGGAATTGAAACAAGCCCTCGATAATTTAAATTCTGAGTTGCTACCTAAAAAGAAATTCTCATTCAAAAACAAAGCCACGAAGAAAGACCAAAAATCAGAGTCGAAAGATCCAGGGCTTGAAAATGCTGATTCTATGTTAATGAACAAGCAACAGCAAGCGAGTTACAGCGCGCGGGATTCTCCAGGAATCAGAGACAAGGACGGAGAGATTCTGGTAAAGAATTTCAAGGGATCAGATGTTGGGGAATTCACTATCTCGGGTCTTAGTTCTTGTGAGGTCAAGTTGATCGGTAGTGTTAGGGCATTATTTATTCACAAACTAAGAAACTGCAAAGTTTACACAGGACCTGTAATGGGTTCAATTCTAATTGATGATGTTGAGGAATGTACCTTTGCAATGGCCTCCCATCAAATCCGGATTCACAACGCTAAGAAAAGCGATTTCTATCTCAGAGTCAGGAGTAGGCCGATCATTGAAGATAGTAGCAGCGTGCGATTCGCTCCCTATCGTGTGAGCTACGAAGGAATTGAAGAAGATCTCACAGATGCAACCCTTGGCGTGGAGACAGGGAATTGGGAAAATGTAGATGATTTTCGTTGGTTACGAGCCGTGCCGTCTCCGAACTGGTCGATTTTGCCGGAGGATGAGCGGATTGACACCATCAAAATCTCTCCCACAGAAGGTTAAGCCTTTGAAAGTTAAGTTTTTCATCTCTACTTTTGATGAATCCCAAGTTTTCTTTCAAGGTTTTGTTTGGTTAATAGAGCAGTAGGATGCATCATAGAGAATTTCAAGTAGTTGATTTTGCTGTGATTGTGTGTATACAAAACTGGGAATCCTAGTAAATTCTCTCCCTTTCAATTGGTTGATTTTTCAAAAAATATTTCCTGGGTTGGCTGTTTTTCTTGCTGCCTTCGAGTGAGTTGCTATAGCCACTTGATAACTTTGCCTGAAGGAATATGATTGTCATTTCTTTTCATACCATGAAGATTTAGACTACTATGATTTTGAATGAAACATTGTCTCAAAATTGAATATTAGTTCTGGAAACATGATTTGTAGGCTTTCTGCCCCTGTATGTATGCTTGTTGAATCTTGTAGCAGTCTCAAATTTTGATGTACTATGATGAGTAAAAAGTATTGGAGAGTTCTTCAATCAAAGGGGTGATCATAAGTACAACTGATATATGTCTCAAGAGTTTTCATCTAATGAATGCTATGCTTATGGAAGGTTTGGAAATTGCATGGAACAAATGAACACCAAGTACCTTATATGTAAGTTACGAACATGAAGTTCGAGAAGAAAGATATAAGCTATAAAGAAGAAGAAACATTCTTGAAAGTGTTGTCATTTCGTTCTCCTCAAAGATGTCAGAAGATCATACATAGATTATGGATATAGGAAATGATACCAACCAACCAACTCAAAGTTTTCCAAAGAGAACCAAAACCGATATGCAGAAGGACAATGCACGTTTTAGTGGCAAGAAATAGTCTCCATTCCTTTAGATTTATGATCCCCAACAACTCATGCCAAAGCTTTCGTGATCGCATTCCAAATTTGAGCCAAAAGCTTTTGGTGCATCCCTCAAATATTGTATAAAGCAACATATTCATTTGTCTGCTTGTTCGTTTGCTAACAAGTATCCGTCGATATTACCTCCTGCCTAAAAAAATTAAGAGGAAACGAATGCCTCCGAGGAGATCATGGTTTGACTCGTTGTCATCGATTATACCCCATAATATTTATATTAAAACAACAACAAACTAAAAAGCATGGTTAGAGTGACATCTTCTCATTCTTTTTCTTTCAAGAAAAAGATTTCCTAATCGTCCTTACAAGTTCAATTCATTTTTATC

Coding sequence (CDS)

TTACTCTTTGCCCTCATACGAGCCACGAAGAAAGACCAAAAATCAGAGTCGAAAGATCCAGGGCTTGAAAATGCTGATTCTATGTTAATGAACAAGCAACAGCAAGCGAGTTACAGCGCGCGGGATTCTCCAGGAATCAGAGACAAGGACGGAGAGATTCTGGTAAAGAATTTCAAGGGATCAGATGTTGGGGAATTCACTATCTCGGGTCTTAGTTCTTGTGAGGTCAAGTTGATCGGTAGTGTTAGGGCATTATTTATTCACAAACTAAGAAACTGCAAAGTTTACACAGGACCTGTAATGGGTTCAATTCTAATTGATGATGTTGAGGAATGTACCTTTGCAATGGCCTCCCATCAAATCCGGATTCACAACGCTAAGAAAAGCGATTTCTATCTCAGAGTCAGGAGTAGGCCGATCATTGAAGATAGTAGCAGCGTGCGATTCGCTCCCTATCGTGTGAGCTACGAAGGAATTGAAGAAGATCTCACAGATGCAACCCTTGGCGTGGAGACAGGGAATTGGGAAAATGTAGATGATTTTCGTTGGTTACGAGCCGTGCCGTCTCCGAACTGGTCGATTTTGCCGGAGGATGAGCGGATTGACACCATCAAAATCTCTCCCACAGAAGGTTAA

Protein sequence

LLFALIRATKKDQKSESKDPGLENADSMLMNKQQQASYSARDSPGIRDKDGEILVKNFKGSDVGEFTISGLSSCEVKLIGSVRALFIHKLRNCKVYTGPVMGSILIDDVEECTFAMASHQIRIHNAKKSDFYLRVRSRPIIEDSSSVRFAPYRVSYEGIEEDLTDATLGVETGNWENVDDFRWLRAVPSPNWSILPEDERIDTIKISPTEG

Homology

[Close]

BLAST of Cucsat.G16530 vs. ExPASy Swiss-Prot
Match: Q9SMR2 (Tubulin-folding cofactor C OS=Arabidopsis thaliana OX=3702 GN=TFCC PE=1 SV=1)

HSP 1 Score: 256.9 bits (655), Expect = 2.0e-67
Identity = 125/195 (64.10%), Postives = 152/195 (77.95%), Query Frame = 0


Query: 13  QKSESKDPGLENADSMLMNKQQQASYSARDSPGIRDKDGEILVKNFKGSDVGEFTISGLS 72
           +K ESK P ++  D +L  K        RDSPG+R+K GE LVK+F+GS +GEFT+S L 
Sbjct: 152 KKPESKLPEIQKPDVVLPPK----LVPVRDSPGLRNKHGETLVKSFEGSSIGEFTLSDLD 211

Query: 73  SCEVKLIGSVRALFIHKLRNCKVYTGPVMGSILIDDVEECTFAMASHQIRIHNAKKSDFY 132
           SC+VKL G+V ALF+H+L+ C VYTGPV+GSILIDDVE+C   +ASHQIRIH A+KSDFY
Sbjct: 212 SCQVKLTGTVNALFLHRLKKCSVYTGPVIGSILIDDVEDCVLVLASHQIRIHCARKSDFY 271

Query: 133 LRVRSRPIIEDSSSVRFAPYRVSYEGIEEDLTDATLGVETGNWENVDDFRWLRAVPSPNW 192
           LRVRSRPIIEDS+ VRFAPY + Y+GI+EDL  A L  ET NW NVDDFRWLRAV SPNW
Sbjct: 272 LRVRSRPIIEDSNGVRFAPYCLDYKGIDEDLKTAGLEEETNNWANVDDFRWLRAVQSPNW 331

Query: 193 SILPEDERIDTIKIS 208
           S+LPE+ER+  + IS
Sbjct: 332 SLLPEEERVSLLTIS 342

[Close]

BLAST of Cucsat.G16530 vs. ExPASy Swiss-Prot
Match: Q8VCN9 (Tubulin-specific chaperone C OS=Mus musculus OX=10090 GN=Tbcc PE=1 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 3.2e-33
Identity = 77/198 (38.89%), Postives = 114/198 (57.58%), Query Frame = 0


Query: 7   RATKKDQKSESK---DPGLENADSMLMNKQQQASYSARDSPGIRDKDGEILVKNFKGSDV 66
           +A KKD    ++    P    A S  + K+++ +  A  + G  + + + L K  +    
Sbjct: 139 KARKKDAAGTAQVDAAPVTSAAPSPPVTKEEEGAPGASWACGFSNLESQDLEKRAEELHQ 198

Query: 67  GEFTISGLSSCEVKLIGSVRALFIHKLRNCKVYTGPVMGSILIDDVEECTFAMASHQIRI 126
            +  +S L++C VKL G+   L + K R CKV  GPV  S+ ++D  +C  A+A  Q+R+
Sbjct: 199 RDVLLSDLTNCTVKLCGNPNTLRLAKARGCKVLCGPVTTSVFLEDCRDCVLAVACQQLRV 258

Query: 127 HNAKKSDFYLRVRSRPIIEDSSSVRFAPYRVSYEGIEEDLTDATLGVETGNWENVDDFRW 186
           H  K +  +L+V SR I+ED S ++FAPY  SY GI++D  D+ L     NW+ VDDF W
Sbjct: 259 HTTKDTRVFLQVTSRAIVEDCSGIQFAPYTWSYPGIDKDFQDSGLDRSKNNWDQVDDFNW 318

Query: 187 L-RAVPSPNWSILPEDER 201
           L R V SPNWSILPE+ER
Sbjct: 319 LARNVASPNWSILPEEER 336

[Close]

BLAST of Cucsat.G16530 vs. ExPASy Swiss-Prot
Match: Q15814 (Tubulin-specific chaperone C OS=Homo sapiens OX=9606 GN=TBCC PE=1 SV=2)

HSP 1 Score: 132.5 bits (332), Expect = 5.6e-30
Identity = 66/182 (36.26%), Postives = 103/182 (56.59%), Query Frame = 0


Query: 20  PGLENADSMLMNKQQQASYSARDSPGIRDKDGEILVKNFKGSDVGEFTISGLSSCEVKLI 79
           P +E+     + K+ +         G  + + ++L K        +  ++ LS+C V+L 
Sbjct: 160 PAVESIQDSPLPKKAEGDLGPSWVCGFSNLESQVLEKRASELHQRDVLLTELSNCTVRLY 219

Query: 80  GSVRALFIHKLRNCKVYTGPVMGSILIDDVEECTFAMASHQIRIHNAKKSDFYLRVRSRP 139
           G+   L + K  +CK+  GPV  S+ ++D  +C  A+A  Q+RIH+ K +  +L+V SR 
Sbjct: 220 GNPNTLRLTKAHSCKLLCGPVSTSVFLEDCSDCVLAVACQQLRIHSTKDTRIFLQVTSRA 279

Query: 140 IIEDSSSVRFAPYRVSYEGIEEDLTDATLGVETGNWENVDDFRWL-RAVPSPNWSILPED 199
           I+ED S ++FAPY  SY  I++D   + L     NW +VDDF WL R + SPNWSILPE+
Sbjct: 280 IVEDCSGIQFAPYTWSYPEIDKDFESSGLDRSKNNWNDVDDFNWLARDMASPNWSILPEE 339

Query: 200 ER 201
           ER
Sbjct: 340 ER 341

[Close]

BLAST of Cucsat.G16530 vs. ExPASy Swiss-Prot
Match: Q5R5J7 (Tubulin-specific chaperone C OS=Pongo abelii OX=9601 GN=TBCC PE=2 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 1.2e-29
Identity = 65/182 (35.71%), Postives = 103/182 (56.59%), Query Frame = 0


Query: 20  PGLENADSMLMNKQQQASYSARDSPGIRDKDGEILVKNFKGSDVGEFTISGLSSCEVKLI 79
           P +E+     + K+ +    +    G  + + ++L K        +  ++ LS+C V+L 
Sbjct: 160 PAVESIQDSPLPKKAEGDLGSSWLCGFSNLESQVLEKRASELHQRDVLLTELSNCTVRLY 219

Query: 80  GSVRALFIHKLRNCKVYTGPVMGSILIDDVEECTFAMASHQIRIHNAKKSDFYLRVRSRP 139
           G+   L + K  +CK+  GPV  S+ ++D  +C  A+A  Q+RIH+ K +  +L+V SR 
Sbjct: 220 GNPNTLRLTKAHSCKLLCGPVSTSVFLEDCSDCVLAVACQQLRIHSTKDTRIFLQVTSRA 279

Query: 140 IIEDSSSVRFAPYRVSYEGIEEDLTDATLGVETGNWENVDDFRWL-RAVPSPNWSILPED 199
           I+ED S ++FAPY  SY  I++D   + L     NW +VDDF WL R + SPNW ILPE+
Sbjct: 280 IVEDCSGIQFAPYTWSYPEIDKDFESSGLDRSKNNWNDVDDFNWLARDMASPNWCILPEE 339

Query: 200 ER 201
           ER
Sbjct: 340 ER 341

[Close]

BLAST of Cucsat.G16530 vs. ExPASy Swiss-Prot
Match: Q3SZE9 (Tubulin-specific chaperone C OS=Bos taurus OX=9913 GN=TBCC PE=2 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 1.1e-28
Identity = 59/157 (37.58%), Postives = 93/157 (59.24%), Query Frame = 0


Query: 45  GIRDKDGEILVKNFKGSDVGEFTISGLSSCEVKLIGSVRALFIHKLRNCKVYTGPVMGSI 104
           G  +   ++L K  +     +  ++ L +C +KL G+   L + K + C +  GPV  S+
Sbjct: 184 GFSNLQSQVLEKRAEELHQQDVLLTQLRNCTIKLYGNPNTLRLTKAQGCTLLCGPVSTSV 243

Query: 105 LIDDVEECTFAMASHQIRIHNAKKSDFYLRVRSRPIIEDSSSVRFAPYRVSYEGIEEDLT 164
            ++D  +C  A+A  Q+R+H  K +  +L+V SR I+ED + ++FAPY  SY GI++D  
Sbjct: 244 FLEDCSDCVLAVACQQLRVHTTKDTRIFLQVTSRAIMEDCTGIQFAPYTWSYPGIDKDFE 303

Query: 165 DATLGVETGNWENVDDFRWL-RAVPSPNWSILPEDER 201
            + L     NW +VDDF WL R V SPNW++LPE+ER
Sbjct: 304 GSGLDKNKNNWNDVDDFNWLARDVASPNWNVLPEEER 340

[Close]

BLAST of Cucsat.G16530 vs. NCBI nr
Match: XP_004146878.1 (tubulin-folding cofactor C [Cucumis sativus] >XP_031745695.1 tubulin-folding cofactor C-like [Cucumis sativus] >XP_031745696.1 tubulin-folding cofactor C-like [Cucumis sativus] >XP_031745718.1 tubulin-folding cofactor C-like [Cucumis sativus] >KAE8637155.1 hypothetical protein CSA_004637 [Cucumis sativus] >KAE8637175.1 hypothetical protein CSA_018806 [Cucumis sativus] >KAE8637238.1 hypothetical protein CSA_021633 [Cucumis sativus] >KGN53206.1 hypothetical protein Csa_015020 [Cucumis sativus])

HSP 1 Score: 410 bits (1055), Expect = 3.91e-142
Identity = 204/205 (99.51%), Postives = 205/205 (100.00%), Query Frame = 0


Query: 7   RATKKDQKSESKDPGLENADSMLMNKQQQASYSARDSPGIRDKDGEILVKNFKGSDVGEF 66
           +ATKKDQKSESKDPGLENADSMLMNKQQQASYSARDSPGIRDKDGEILVKNFKGSDVGEF
Sbjct: 152 KATKKDQKSESKDPGLENADSMLMNKQQQASYSARDSPGIRDKDGEILVKNFKGSDVGEF 211

Query: 67  TISGLSSCEVKLIGSVRALFIHKLRNCKVYTGPVMGSILIDDVEECTFAMASHQIRIHNA 126
           TISGLSSCEVKLIGSVRALFIHKLRNCKVYTGPVMGSILIDDVEECTFAMASHQIRIHNA
Sbjct: 212 TISGLSSCEVKLIGSVRALFIHKLRNCKVYTGPVMGSILIDDVEECTFAMASHQIRIHNA 271

Query: 127 KKSDFYLRVRSRPIIEDSSSVRFAPYRVSYEGIEEDLTDATLGVETGNWENVDDFRWLRA 186
           KKSDFYLRVRSRPIIEDSSSVRFAPYRVSYEGIEEDLTDATLGVETGNWENVDDFRWLRA
Sbjct: 272 KKSDFYLRVRSRPIIEDSSSVRFAPYRVSYEGIEEDLTDATLGVETGNWENVDDFRWLRA 331

Query: 187 VPSPNWSILPEDERIDTIKISPTEG 211
           VPSPNWSILPEDERIDTIKISPTEG
Sbjct: 332 VPSPNWSILPEDERIDTIKISPTEG 356

[Close]

BLAST of Cucsat.G16530 vs. NCBI nr
Match: XP_008453815.1 (PREDICTED: tubulin-folding cofactor C [Cucumis melo] >TYK16879.1 tubulin-folding cofactor C [Cucumis melo var. makuwa])

HSP 1 Score: 393 bits (1009), Expect = 3.89e-135
Identity = 195/205 (95.12%), Postives = 200/205 (97.56%), Query Frame = 0


Query: 7   RATKKDQKSESKDPGLENADSMLMNKQQQASYSARDSPGIRDKDGEILVKNFKGSDVGEF 66
           +ATKKDQKSESKDPGL NADSML NKQQQASY+ARDSPGIRDKDGEILVKNFKGSD+GEF
Sbjct: 152 KATKKDQKSESKDPGLGNADSMLTNKQQQASYNARDSPGIRDKDGEILVKNFKGSDIGEF 211

Query: 67  TISGLSSCEVKLIGSVRALFIHKLRNCKVYTGPVMGSILIDDVEECTFAMASHQIRIHNA 126
           TISGLSSCEVKLIG+VRALFIHKLRNCKVYTGPVMGSILIDDVEECTFAMASHQIRIHNA
Sbjct: 212 TISGLSSCEVKLIGTVRALFIHKLRNCKVYTGPVMGSILIDDVEECTFAMASHQIRIHNA 271

Query: 127 KKSDFYLRVRSRPIIEDSSSVRFAPYRVSYEGIEEDLTDATLGVETGNWENVDDFRWLRA 186
           K SDFYLRVRSRPIIEDSSSVRFAPYRVSYEGIEEDLTDA+LGVETGNWENVDDF WLRA
Sbjct: 272 KNSDFYLRVRSRPIIEDSSSVRFAPYRVSYEGIEEDLTDASLGVETGNWENVDDFLWLRA 331

Query: 187 VPSPNWSILPEDERIDTIKISPTEG 211
           VPSPNWSILPEDERIDTIKIS TEG
Sbjct: 332 VPSPNWSILPEDERIDTIKISLTEG 356

[Close]

BLAST of Cucsat.G16530 vs. NCBI nr
Match: KAA0044708.1 (tubulin-folding cofactor C [Cucumis melo var. makuwa])

HSP 1 Score: 392 bits (1006), Expect = 1.11e-134
Identity = 194/205 (94.63%), Postives = 200/205 (97.56%), Query Frame = 0


Query: 7   RATKKDQKSESKDPGLENADSMLMNKQQQASYSARDSPGIRDKDGEILVKNFKGSDVGEF 66
           +ATKKDQKSESKDPGL NADSML NKQQQASY+ARDSPGIRDKDGEILVKNFKGSD+GEF
Sbjct: 152 KATKKDQKSESKDPGLGNADSMLTNKQQQASYNARDSPGIRDKDGEILVKNFKGSDIGEF 211

Query: 67  TISGLSSCEVKLIGSVRALFIHKLRNCKVYTGPVMGSILIDDVEECTFAMASHQIRIHNA 126
           TISGLSSCEVKLIG+VRALFIHKLRNCKVYTGPVMGSILIDDV+ECTFAMASHQIRIHNA
Sbjct: 212 TISGLSSCEVKLIGTVRALFIHKLRNCKVYTGPVMGSILIDDVQECTFAMASHQIRIHNA 271

Query: 127 KKSDFYLRVRSRPIIEDSSSVRFAPYRVSYEGIEEDLTDATLGVETGNWENVDDFRWLRA 186
           K SDFYLRVRSRPIIEDSSSVRFAPYRVSYEGIEEDLTDA+LGVETGNWENVDDF WLRA
Sbjct: 272 KNSDFYLRVRSRPIIEDSSSVRFAPYRVSYEGIEEDLTDASLGVETGNWENVDDFLWLRA 331

Query: 187 VPSPNWSILPEDERIDTIKISPTEG 211
           VPSPNWSILPEDERIDTIKIS TEG
Sbjct: 332 VPSPNWSILPEDERIDTIKISLTEG 356

[Close]

BLAST of Cucsat.G16530 vs. NCBI nr
Match: XP_022929266.1 (tubulin-folding cofactor C [Cucurbita moschata])

HSP 1 Score: 366 bits (940), Expect = 1.20e-124
Identity = 185/205 (90.24%), Postives = 189/205 (92.20%), Query Frame = 0


Query: 7   RATKKDQKSESKDPGLENADSMLMNKQQQASYSARDSPGIRDKDGEILVKNFKGSDVGEF 66
           + TKKD KSESKD GL NA SML NKQQQASY ARDSPGIRDKDGE+LVKNFKGSDVGEF
Sbjct: 152 KGTKKDTKSESKDLGLGNAGSMLTNKQQQASYIARDSPGIRDKDGEVLVKNFKGSDVGEF 211

Query: 67  TISGLSSCEVKLIGSVRALFIHKLRNCKVYTGPVMGSILIDDVEECTFAMASHQIRIHNA 126
           TISGLSSCEVKLIGSVRALFIHKLRNCKVYTGPVMGSILIDDVE CTFAMASHQIRIHNA
Sbjct: 212 TISGLSSCEVKLIGSVRALFIHKLRNCKVYTGPVMGSILIDDVEGCTFAMASHQIRIHNA 271

Query: 127 KKSDFYLRVRSRPIIEDSSSVRFAPYRVSYEGIEEDLTDATLGVETGNWENVDDFRWLRA 186
           K SDFYLRVRSRPIIEDSSSVRFAPY VSYEGIEEDL DA+LG ETGNWENVDDFRWLRA
Sbjct: 272 KNSDFYLRVRSRPIIEDSSSVRFAPYCVSYEGIEEDLKDASLGEETGNWENVDDFRWLRA 331

Query: 187 VPSPNWSILPEDERIDTIKISPTEG 211
           V SPNWSIL E ERIDT+KIS TEG
Sbjct: 332 VQSPNWSILAEGERIDTVKISSTEG 356

[Close]

BLAST of Cucsat.G16530 vs. NCBI nr
Match: XP_023553493.1 (tubulin-folding cofactor C [Cucurbita pepo subsp. pepo])

HSP 1 Score: 366 bits (940), Expect = 1.20e-124
Identity = 185/205 (90.24%), Postives = 189/205 (92.20%), Query Frame = 0


Query: 7   RATKKDQKSESKDPGLENADSMLMNKQQQASYSARDSPGIRDKDGEILVKNFKGSDVGEF 66
           + TKKD KSESKD GL NA SML NKQQQASY ARDSPGIRDKDGE+LVKNFKGSDVGEF
Sbjct: 152 KGTKKDTKSESKDLGLGNAGSMLTNKQQQASYIARDSPGIRDKDGEVLVKNFKGSDVGEF 211

Query: 67  TISGLSSCEVKLIGSVRALFIHKLRNCKVYTGPVMGSILIDDVEECTFAMASHQIRIHNA 126
           TISGLSSCEVKLIGSVRALFIHKLRNCKVYTGPVMGSILIDDVE CTFAMASHQIRIHNA
Sbjct: 212 TISGLSSCEVKLIGSVRALFIHKLRNCKVYTGPVMGSILIDDVEGCTFAMASHQIRIHNA 271

Query: 127 KKSDFYLRVRSRPIIEDSSSVRFAPYRVSYEGIEEDLTDATLGVETGNWENVDDFRWLRA 186
           K SDFYLRVRSRPIIEDSSSVRFAPY VSYEGIEEDL DA+LG ETGNWENVDDFRWLRA
Sbjct: 272 KNSDFYLRVRSRPIIEDSSSVRFAPYCVSYEGIEEDLKDASLGEETGNWENVDDFRWLRA 331

Query: 187 VPSPNWSILPEDERIDTIKISPTEG 211
           V SPNWSIL  DERIDT+KIS TEG
Sbjct: 332 VHSPNWSILAADERIDTVKISSTEG 356

[Close]

BLAST of Cucsat.G16530 vs. ExPASy TrEMBL
Match: A0A0A0KZA3 (Tubulin-folding cofactor C OS=Cucumis sativus OX=3659 GN=Csa_4G026830 PE=3 SV=1)

HSP 1 Score: 410 bits (1055), Expect = 1.90e-142
Identity = 204/205 (99.51%), Postives = 205/205 (100.00%), Query Frame = 0


Query: 7   RATKKDQKSESKDPGLENADSMLMNKQQQASYSARDSPGIRDKDGEILVKNFKGSDVGEF 66
           +ATKKDQKSESKDPGLENADSMLMNKQQQASYSARDSPGIRDKDGEILVKNFKGSDVGEF
Sbjct: 152 KATKKDQKSESKDPGLENADSMLMNKQQQASYSARDSPGIRDKDGEILVKNFKGSDVGEF 211

Query: 67  TISGLSSCEVKLIGSVRALFIHKLRNCKVYTGPVMGSILIDDVEECTFAMASHQIRIHNA 126
           TISGLSSCEVKLIGSVRALFIHKLRNCKVYTGPVMGSILIDDVEECTFAMASHQIRIHNA
Sbjct: 212 TISGLSSCEVKLIGSVRALFIHKLRNCKVYTGPVMGSILIDDVEECTFAMASHQIRIHNA 271

Query: 127 KKSDFYLRVRSRPIIEDSSSVRFAPYRVSYEGIEEDLTDATLGVETGNWENVDDFRWLRA 186
           KKSDFYLRVRSRPIIEDSSSVRFAPYRVSYEGIEEDLTDATLGVETGNWENVDDFRWLRA
Sbjct: 272 KKSDFYLRVRSRPIIEDSSSVRFAPYRVSYEGIEEDLTDATLGVETGNWENVDDFRWLRA 331

Query: 187 VPSPNWSILPEDERIDTIKISPTEG 211
           VPSPNWSILPEDERIDTIKISPTEG
Sbjct: 332 VPSPNWSILPEDERIDTIKISPTEG 356

[Close]

BLAST of Cucsat.G16530 vs. ExPASy TrEMBL
Match: A0A5D3D2T6 (Tubulin-folding cofactor C OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold130G00100 PE=3 SV=1)

HSP 1 Score: 393 bits (1009), Expect = 1.88e-135
Identity = 195/205 (95.12%), Postives = 200/205 (97.56%), Query Frame = 0


Query: 7   RATKKDQKSESKDPGLENADSMLMNKQQQASYSARDSPGIRDKDGEILVKNFKGSDVGEF 66
           +ATKKDQKSESKDPGL NADSML NKQQQASY+ARDSPGIRDKDGEILVKNFKGSD+GEF
Sbjct: 152 KATKKDQKSESKDPGLGNADSMLTNKQQQASYNARDSPGIRDKDGEILVKNFKGSDIGEF 211

Query: 67  TISGLSSCEVKLIGSVRALFIHKLRNCKVYTGPVMGSILIDDVEECTFAMASHQIRIHNA 126
           TISGLSSCEVKLIG+VRALFIHKLRNCKVYTGPVMGSILIDDVEECTFAMASHQIRIHNA
Sbjct: 212 TISGLSSCEVKLIGTVRALFIHKLRNCKVYTGPVMGSILIDDVEECTFAMASHQIRIHNA 271

Query: 127 KKSDFYLRVRSRPIIEDSSSVRFAPYRVSYEGIEEDLTDATLGVETGNWENVDDFRWLRA 186
           K SDFYLRVRSRPIIEDSSSVRFAPYRVSYEGIEEDLTDA+LGVETGNWENVDDF WLRA
Sbjct: 272 KNSDFYLRVRSRPIIEDSSSVRFAPYRVSYEGIEEDLTDASLGVETGNWENVDDFLWLRA 331

Query: 187 VPSPNWSILPEDERIDTIKISPTEG 211
           VPSPNWSILPEDERIDTIKIS TEG
Sbjct: 332 VPSPNWSILPEDERIDTIKISLTEG 356

[Close]

BLAST of Cucsat.G16530 vs. ExPASy TrEMBL
Match: A0A1S3BX62 (Tubulin-folding cofactor C OS=Cucumis melo OX=3656 GN=LOC103494429 PE=3 SV=1)

HSP 1 Score: 393 bits (1009), Expect = 1.88e-135
Identity = 195/205 (95.12%), Postives = 200/205 (97.56%), Query Frame = 0


Query: 7   RATKKDQKSESKDPGLENADSMLMNKQQQASYSARDSPGIRDKDGEILVKNFKGSDVGEF 66
           +ATKKDQKSESKDPGL NADSML NKQQQASY+ARDSPGIRDKDGEILVKNFKGSD+GEF
Sbjct: 152 KATKKDQKSESKDPGLGNADSMLTNKQQQASYNARDSPGIRDKDGEILVKNFKGSDIGEF 211

Query: 67  TISGLSSCEVKLIGSVRALFIHKLRNCKVYTGPVMGSILIDDVEECTFAMASHQIRIHNA 126
           TISGLSSCEVKLIG+VRALFIHKLRNCKVYTGPVMGSILIDDVEECTFAMASHQIRIHNA
Sbjct: 212 TISGLSSCEVKLIGTVRALFIHKLRNCKVYTGPVMGSILIDDVEECTFAMASHQIRIHNA 271

Query: 127 KKSDFYLRVRSRPIIEDSSSVRFAPYRVSYEGIEEDLTDATLGVETGNWENVDDFRWLRA 186
           K SDFYLRVRSRPIIEDSSSVRFAPYRVSYEGIEEDLTDA+LGVETGNWENVDDF WLRA
Sbjct: 272 KNSDFYLRVRSRPIIEDSSSVRFAPYRVSYEGIEEDLTDASLGVETGNWENVDDFLWLRA 331

Query: 187 VPSPNWSILPEDERIDTIKISPTEG 211
           VPSPNWSILPEDERIDTIKIS TEG
Sbjct: 332 VPSPNWSILPEDERIDTIKISLTEG 356

[Close]

BLAST of Cucsat.G16530 vs. ExPASy TrEMBL
Match: A0A5A7TP94 (Tubulin-folding cofactor C OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G004650 PE=3 SV=1)

HSP 1 Score: 392 bits (1006), Expect = 5.38e-135
Identity = 194/205 (94.63%), Postives = 200/205 (97.56%), Query Frame = 0


Query: 7   RATKKDQKSESKDPGLENADSMLMNKQQQASYSARDSPGIRDKDGEILVKNFKGSDVGEF 66
           +ATKKDQKSESKDPGL NADSML NKQQQASY+ARDSPGIRDKDGEILVKNFKGSD+GEF
Sbjct: 152 KATKKDQKSESKDPGLGNADSMLTNKQQQASYNARDSPGIRDKDGEILVKNFKGSDIGEF 211

Query: 67  TISGLSSCEVKLIGSVRALFIHKLRNCKVYTGPVMGSILIDDVEECTFAMASHQIRIHNA 126
           TISGLSSCEVKLIG+VRALFIHKLRNCKVYTGPVMGSILIDDV+ECTFAMASHQIRIHNA
Sbjct: 212 TISGLSSCEVKLIGTVRALFIHKLRNCKVYTGPVMGSILIDDVQECTFAMASHQIRIHNA 271

Query: 127 KKSDFYLRVRSRPIIEDSSSVRFAPYRVSYEGIEEDLTDATLGVETGNWENVDDFRWLRA 186
           K SDFYLRVRSRPIIEDSSSVRFAPYRVSYEGIEEDLTDA+LGVETGNWENVDDF WLRA
Sbjct: 272 KNSDFYLRVRSRPIIEDSSSVRFAPYRVSYEGIEEDLTDASLGVETGNWENVDDFLWLRA 331

Query: 187 VPSPNWSILPEDERIDTIKISPTEG 211
           VPSPNWSILPEDERIDTIKIS TEG
Sbjct: 332 VPSPNWSILPEDERIDTIKISLTEG 356

[Close]

BLAST of Cucsat.G16530 vs. ExPASy TrEMBL
Match: A0A6J1EMN1 (Tubulin-folding cofactor C OS=Cucurbita moschata OX=3662 GN=LOC111435895 PE=3 SV=1)

HSP 1 Score: 366 bits (940), Expect = 5.82e-125
Identity = 185/205 (90.24%), Postives = 189/205 (92.20%), Query Frame = 0


Query: 7   RATKKDQKSESKDPGLENADSMLMNKQQQASYSARDSPGIRDKDGEILVKNFKGSDVGEF 66
           + TKKD KSESKD GL NA SML NKQQQASY ARDSPGIRDKDGE+LVKNFKGSDVGEF
Sbjct: 152 KGTKKDTKSESKDLGLGNAGSMLTNKQQQASYIARDSPGIRDKDGEVLVKNFKGSDVGEF 211

Query: 67  TISGLSSCEVKLIGSVRALFIHKLRNCKVYTGPVMGSILIDDVEECTFAMASHQIRIHNA 126
           TISGLSSCEVKLIGSVRALFIHKLRNCKVYTGPVMGSILIDDVE CTFAMASHQIRIHNA
Sbjct: 212 TISGLSSCEVKLIGSVRALFIHKLRNCKVYTGPVMGSILIDDVEGCTFAMASHQIRIHNA 271

Query: 127 KKSDFYLRVRSRPIIEDSSSVRFAPYRVSYEGIEEDLTDATLGVETGNWENVDDFRWLRA 186
           K SDFYLRVRSRPIIEDSSSVRFAPY VSYEGIEEDL DA+LG ETGNWENVDDFRWLRA
Sbjct: 272 KNSDFYLRVRSRPIIEDSSSVRFAPYCVSYEGIEEDLKDASLGEETGNWENVDDFRWLRA 331

Query: 187 VPSPNWSILPEDERIDTIKISPTEG 211
           V SPNWSIL E ERIDT+KIS TEG
Sbjct: 332 VQSPNWSILAEGERIDTVKISSTEG 356

The following BLAST results are available for this feature:

BLAST of Cucsat.G16530 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SMR2	2.0e-67	64.10	Tubulin-folding cofactor C OS=Arabidopsis thaliana OX=3702 GN=TFCC PE=1 SV=1	[more]
Q8VCN9	3.2e-33	38.89	Tubulin-specific chaperone C OS=Mus musculus OX=10090 GN=Tbcc PE=1 SV=1	[more]
Q15814	5.6e-30	36.26	Tubulin-specific chaperone C OS=Homo sapiens OX=9606 GN=TBCC PE=1 SV=2	[more]
Q5R5J7	1.2e-29	35.71	Tubulin-specific chaperone C OS=Pongo abelii OX=9601 GN=TBCC PE=2 SV=1	[more]
Q3SZE9	1.1e-28	37.58	Tubulin-specific chaperone C OS=Bos taurus OX=9913 GN=TBCC PE=2 SV=1	[more]

BLAST of Cucsat.G16530 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004146878.1	3.91e-142	99.51	tubulin-folding cofactor C [Cucumis sativus] >XP_031745695.1 tubulin-folding cof...	[more]
XP_008453815.1	3.89e-135	95.12	PREDICTED: tubulin-folding cofactor C [Cucumis melo] >TYK16879.1 tubulin-folding...	[more]
KAA0044708.1	1.11e-134	94.63	tubulin-folding cofactor C [Cucumis melo var. makuwa]	[more]
XP_022929266.1	1.20e-124	90.24	tubulin-folding cofactor C [Cucurbita moschata]	[more]
XP_023553493.1	1.20e-124	90.24	tubulin-folding cofactor C [Cucurbita pepo subsp. pepo]	[more]

BLAST of Cucsat.G16530 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KZA3	1.90e-142	99.51	Tubulin-folding cofactor C OS=Cucumis sativus OX=3659 GN=Csa_4G026830 PE=3 SV=1	[more]
A0A5D3D2T6	1.88e-135	95.12	Tubulin-folding cofactor C OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff...	[more]
A0A1S3BX62	1.88e-135	95.12	Tubulin-folding cofactor C OS=Cucumis melo OX=3656 GN=LOC103494429 PE=3 SV=1	[more]
A0A5A7TP94	5.38e-135	94.63	Tubulin-folding cofactor C OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaff...	[more]
A0A6J1EMN1	5.82e-125	90.24	Tubulin-folding cofactor C OS=Cucurbita moschata OX=3662 GN=LOC111435895 PE=3 SV...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006599	CARP motif	SMART	SM00673	carp	coord: 109..143 e-value: 2.2E-4 score: 30.6 coord: 71..108 e-value: 3.8E-6 score: 36.4
IPR016098	Cyclase-associated protein CAP/septum formation inhibitor MinC, C-terminal	GENE3D	2.160.20.70		coord: 45..210 e-value: 3.4E-56 score: 191.5
IPR012945	Tubulin binding cofactor C-like domain	PFAM	PF07986	TBCC	coord: 65..181 e-value: 1.0E-39 score: 135.0
IPR027684	Tubulin-specific chaperone C	PANTHER	PTHR15139	TUBULIN FOLDING COFACTOR C	coord: 13..207
IPR017901	C-CAP/cofactor C-like domain	PROSITE	PS51329	C_CAP_COFACTOR_C	coord: 32..183 score: 34.176373

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsat.G16530.T1	Cucsat.G16530.T1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000902	cell morphogenesis
biological_process	GO:0007023	post-chaperonin tubulin folding pathway
biological_process	GO:0007021	tubulin complex assembly
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0015631	tubulin binding