Cucsat.G16245 (gene) Cucumber (B10) v3

Overview


Name	Cucsat.G16245
Type	gene
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	Remorin_C domain-containing protein
Location	ctg2231: 1248488 .. 1249669 (+)
RNA-Seq Expression	Cucsat.G16245
Synteny	Cucsat.G16245

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTTCATAATTAGTTGTACTGTAATGGAGGAAATTTGCAAGAAATTTTAGAGTGAAAAAATTGGAGAATAAAAAAGTGGTTTTCAAAGGTTTTTACTAGAAGAAGACGAAATATGAGAAAAGAAGTCAGCAGAGACAGAGCTGTGCAATGCAGAGATGAAATGGAGCAGTACACACACACACACACACACATGCTTCTTGCTTTCCCTCTCACTCTCACACTCTCTTTCTCTTTCTGAACTTTTGACCATGGATTCTCAATCTCCAACAAAAACCCTCTCTACCCATCTCCCCTTTTCCTCAAATGTAGCCTTCTAACATACATTCCTTAAATCTCTTGTTTTCTTCTCATTCTCCAAATCCAACCACACCCACCACACTTCTTTATTCCATGGACTACGAGAGGATTCTCAAGCCTCAGGTTCTTCCTCATTTCTTATGCTTTTATGTTTGTCTTCACTGTTGTTCATCTGATTGACGCTATTTTGTTCAGCCTCCCGGTGGAGGGGGGTTTTCACCTGGGAAGCTTAGGAATATGTTGCTTGGCTTGGAGAAGAAGAGGAAGGAGGAAGAGGAAGAGCTTGGATCCATTTACGATTTGAGATCTCAAGCTTTGCAGATCGATGAGGCGGGTAAGTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTGTTTTGTTTGTTTTATGTTCATTGTTTTTGTTTCCTAGAGAGTTGTATGAACGGAATGTTAGAAAATAGAATGAAAAGAAAAAGAGAGAAACAGATTACGTTTTGCTAACAAGGTTCTGTTTATTCATTGTTGTGTTCCAGAACAGAGAAATGATGCATTGTGTTTTCATTTTCAATGTTCACAAGTCATTTGTAGAGATATATTTTATACAGAACCAGAGGGCCTCGATCTTTTTGTGTTTGAAATTTTTTACTTCATACTGCTGCTTGTCTGAGTTGCTGTGCTATTACATGGACATATAGTTTAGGAGTGACATGTTCATGAATTAAAATGAACTTTTGAATTTTACAGTGAGTGAGTCATGAGTGTGCTGTTTTATTGAAGTTGTGATGTTTAATAGGCTGTAGCGCATCTGATATTTGCAAAGATGTGGATGTGGTCAGTGTTCTTCCAGAGTGCTCGACTTCAAAAAAAGCTGATTTACTGGTTTCTGAGATGGTTAGTGAGCATAGATTGAAGGATAATGCTTATAATTCACGACTTAGGATGCAAGACGAGCCTTCTTTTGATTATGACAGTGGGCAGGATGGTTCAACTCTGCTCACTTCAGCCTTTGAGTTCCAGAAGTCAGAGAGGTCCGCACGAGTTCCCCTGGGACCCTTCTCTAAGCCAGCACCATCCAAATGGGATGATGCTCAGAAGTGGATTGCTAGCCCTACTTCAAATAGACCCAAAACAGGGCAATCTCAGACACAAGGTGGACATCTTTTTGGATCACGAAAACTAGGTATTGGTCTTGGGAGTCGTCAACCATCTTTGAAGGTTGTGGTTGAAGTTCCAGATCAGAAAGTGACTGCTTTTGAGGAACCGGATACAAAGCAGATTGATAGTCACGAAGCTAACATTGGAAATGTTGCTCAGAAGTTTGTTTCTTGGGATGCAAATCCATGCGCAGTAGCAGATTCAAATGGCAAGCCTGTGTTGATGATTGAGAGCTCTGTTGGAGAGTCAGCAAGTAAGGACATGAAGTTAATATTAAATTTCAGTGTACTGTATTCTTAATTGCTATCTTGATAGTCTAGCCAGGAAATTTCAGGTAAACTATTTGGGTCCTCATTTTCTATGCAGCTAACAGATATATGAGTTATTCTCCAAAATTAATTGTCTCCTCTCCTGTTATACTACAATAAGAAGTGAAAGGAAAATTGGAATTCACTTTTTCTATTTTTGTTACAACCTTTGCAGTTAGTCTCAGCCAACATGATTCATCTCTGGCCATTCAGACTTCAACTACATTTATTCCTCCTCCCACAACCGCTCGTTCTGTCTCAATGAGAGATATGGGTACAGAGATGACACCTATAGCAAGTCAAGAACCTTCCAGGACTGGAACTCCTGTGAGAGCAACAACACCAATGCGTAGTCCCACTTCTTCAGTACCATCAACTCCTGGTAGAGCAACTTCATCTCCGACCGCTGCCCCTAATGACCGTGTAGATACTAACAAAGAGTTATCTGAAAAGGAGATACAGTTAAAAACTAGAAGAGAGATTGTGGTCCTCGGTACGCAATTAGGGAAACTGAACATTGCTGCATGGGCTAGCAAGGAAGAGGAAGAAAAAGATGCATCGACATCACTTAAAACTGTTGCAACCGAACAACCAACTAAAAGTGTGATAGAAACACGAGCAGCAGCATGGGAGGAGGCTGAAAAAGCCAAGTATATGGCTAGGTAATCTTCATAACATGTTCTACACATTCTGTCAAACCTTGTAGAAAAAGAATATAAAAAGAAAAATAAAAGAAACTTAGCTTTTGGTTGTTTCATTCTCTTGTTATTATTCCTATTCTATCCATATCCTTAATCCCAGATCTCGGCTACTATACTTTGGAGTGGAAAATGTGTCTGGATGAACGGCTTCATTTGATCCATCTTAAAACTGTTTCTAGCTTACTACATTCTCTCTTAACAATTCTTGATAAAGTGAATACTTCCCCGTATCCTCTAGCCAAGGCACTGAGTTCTTTATGAACTAGAACTACTCACTGGGTTGGGAAAGTAGCATAAGCAGCAACGTTATAAAGCTTGTGCTGTGAGTTATTTGAAGAGGGTAACCTGACTACTCTACATACTCCGGCTATATTGAAATGGTGCACAACGTTCAATGATTTGATGTGTTTTATCTCTAAATTGCTAGTAAATTATTATAGTTTACATTTGAATGTTTAAAACTCATTGTTCTGAAAAAGAATGCAGAACCACAAGATCTTGGGTAATTTTAGCCTACAATATTTTAAGCACACTTCTAGTGGTTATAAAAACTAGTAGCGATTCCATTGGTTTCATAATTCTGCACTGCTTTTTTACATGTCTGACTATTCAAGATTACTTTCCAATATTTGATCAACTGCGCATGATCTCCAGGTTCAAACGTGAAGAGATGAAGATTCAAGCATGGGAAAATCATCAGAAAGCAAAAACAGAAGCTGAAATGAGGAGAGTTGAGGTTTGTGCTTACTACTTGATGCTATTCTTGAGCGACATCATCTTTTAGCTGAGAACCATCTATTTTAGCTGTTAAGTTTTCGGTGAGTTATGAACCTGCAGTCAGTTGTGGAATGTTTGCTTTTTCTACATTTGTGCCCGATCAATTATCAATCATAACTTTTTATTAGGTTAAGCCAGTTAGAATTTCTTTTTCTTTTTCAAATGTGTATCATTTAAAGTGCGTTAAAGGGGTTCATTCAAGTCTTTCAGTCAATTTGACTGTCATCTCAGCCCACGTGGGAAAATTTCTAGTGCTATGGTAGTCTAAAAAATTCTTCCTTCCTTTATGGTCCGTATGTCCTACCATAGTACTAGAAATTCTCTCTCAATAGATAGAGTCTATATAGATTTCATGAATGACTAGGGGAGGTAATTTTTGGTTCTGGCTCGAAGTCTAGCACAGTTGAGAGCCTAAAGTTTAATAGTTGCACTCTAACATAGGGCGTTTTGAGCTAAAAAACACAAATATAAAGCCTTGAAGATCAAAATCTTATGAAGGTTGAATTAGTTGTTTTTTGACATATGCAGGTGAAAATAGAAAGAATGAGAGGACAAGCACATGATAGGCTTACAAACAAACTAGCAGCAGTGAGGCACAAAGCTGAAGAAAAGCTAGCAGCAGCGGAAGCGAAGAGAAACCGCCAAGCTGCAATAGCTGAACAACAAGCAGATCATATTCGCCAAACTGGTCGTATTCCTTCTTTATTTTCTTGCTTCTATTGTTGCTCTTGAAATTTGAATACTGTTTCCACTAGTTTATGTGAATGTATTGTATTGTATTTGTGTATACTGTTATACAAAATTCCAGTTCTTTTCGTCTGCATATGGTTGCATGTTTTGTTTCAAATATGAGCTTTTGAAAGAATATATCAGGAGAGTTGCTAATTTCTTGTCCATTTTTCATTTTTTATGTTATCAAATAGGTGGAAAAATGTG

Coding sequence (CDS)

ATGAGAGATATGGGTACAGAGATGACACCTATAGCAAGTCAAGAACCTTCCAGGACTGGAACTCCTGTGAGAGCAACAACACCAATGCGTAGTCCCACTTCTTCAGTACCATCAACTCCTGGTAGAGCAACTTCATCTCCGACCGCTGCCCCTAATGACCGTGTAGATACTAACAAAGAGTTATCTGAAAAGGAGATACAGTTAAAAACTAGAAGAGAGATTGTGGTCCTCGGTACGCAATTAGGGAAACTGAACATTGCTGCATGGGCTAGCAAGGAAGAGGAAGAAAAAGATGCATCGACATCACTTAAAACTGTTGCAACCGAACAACCAACTAAAAGTGTGATAGAAACACGAGCAGCAGCATGGGAGGAGGCTGAAAAAGCCAAGTATATGGCTAGGTTCAAACGTGAAGAGATGAAGATTCAAGCATGGGAAAATCATCAGAAAGCAAAAACAGAAGCTGAAATGAGGAGAGTTGAGGTGAAAATAGAAAGAATGAGAGGACAAGCACATGATAGGCTTACAAACAAACTAGCAGCAGTGAGGCACAAAGCTGAAGAAAAGCTAGCAGCAGCGGAAGCGAAGAGAAACCGCCAAGCTGCAATAGCTGAACAACAAGCAGATCATATTCGCCAAACTGGTCGTATTCCTTCTTTATTTTCTTGCTTCTATTGTTGCTCTTGA

Protein sequence

MRDMGTEMTPIASQEPSRTGTPVRATTPMRSPTSSVPSTPGRATSSPTAAPNDRVDTNKELSEKEIQLKTRREIVVLGTQLGKLNIAAWASKEEEEKDASTSLKTVATEQPTKSVIETRAAAWEEAEKAKYMARFKREEMKIQAWENHQKAKTEAEMRRVEVKIERMRGQAHDRLTNKLAAVRHKAEEKLAAAEAKRNRQAAIAEQQADHIRQTGRIPSLFSCFYCCS

Homology

[Close]

BLAST of Cucsat.G16245 vs. NCBI nr
Match: KAE8648078.1 (hypothetical protein Csa_018858 [Cucumis sativus])

HSP 1 Score: 62.4 bits (150), Expect = 1.00e-08
Identity = 29/36 (80.56%), Postives = 34/36 (94.44%), Query Frame = 0


Query: 51  DQLRMISRFKREEMKIQAWENHQKAKTEAEMRRVEV 86
           ++ + ++RFKREEMKIQAWENHQKAKTEAEMRRVEV
Sbjct: 375 EKAKYMARFKREEMKIQAWENHQKAKTEAEMRRVEV 410

[Close]

BLAST of Cucsat.G16245 vs. NCBI nr
Match: XP_022154297.1 (uncharacterized protein LOC111021589 isoform X2 [Momordica charantia])

HSP 1 Score: 62.4 bits (150), Expect = 1.00e-08
Identity = 29/36 (80.56%), Postives = 34/36 (94.44%), Query Frame = 0


Query: 51  DQLRMISRFKREEMKIQAWENHQKAKTEAEMRRVEV 86
           ++ + ++RFKREEMKIQAWENHQKAKTEAEMRRVEV
Sbjct: 386 EKAKYMARFKREEMKIQAWENHQKAKTEAEMRRVEV 421

[Close]

BLAST of Cucsat.G16245 vs. NCBI nr
Match: XP_022154296.1 (uncharacterized protein LOC111021589 isoform X1 [Momordica charantia])

HSP 1 Score: 62.4 bits (150), Expect = 1.01e-08
Identity = 29/36 (80.56%), Postives = 34/36 (94.44%), Query Frame = 0


Query: 51  DQLRMISRFKREEMKIQAWENHQKAKTEAEMRRVEV 86
           ++ + ++RFKREEMKIQAWENHQKAKTEAEMRRVEV
Sbjct: 410 EKAKYMARFKREEMKIQAWENHQKAKTEAEMRRVEV 445

[Close]

BLAST of Cucsat.G16245 vs. NCBI nr
Match: XP_004140405.1 (uncharacterized protein LOC101221140 [Cucumis sativus] >XP_031742116.1 uncharacterized protein LOC116404064 [Cucumis sativus] >KGN50644.2 hypothetical protein Csa_004727 [Cucumis sativus])

HSP 1 Score: 62.4 bits (150), Expect = 1.01e-08
Identity = 29/36 (80.56%), Postives = 34/36 (94.44%), Query Frame = 0


Query: 51  DQLRMISRFKREEMKIQAWENHQKAKTEAEMRRVEV 86
           ++ + ++RFKREEMKIQAWENHQKAKTEAEMRRVEV
Sbjct: 417 EKAKYMARFKREEMKIQAWENHQKAKTEAEMRRVEV 452

[Close]

BLAST of Cucsat.G16245 vs. NCBI nr
Match: XP_022941921.1 (uncharacterized protein LOC111447138 [Cucurbita moschata])

HSP 1 Score: 62.4 bits (150), Expect = 1.01e-08
Identity = 29/36 (80.56%), Postives = 34/36 (94.44%), Query Frame = 0


Query: 51  DQLRMISRFKREEMKIQAWENHQKAKTEAEMRRVEV 86
           ++ + ++RFKREEMKIQAWENHQKAKTEAEMRRVEV
Sbjct: 418 EKAKYMARFKREEMKIQAWENHQKAKTEAEMRRVEV 453

[Close]

BLAST of Cucsat.G16245 vs. ExPASy TrEMBL
Match: A0A6J1DLB3 (uncharacterized protein LOC111021589 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111021589 PE=3 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 4.86e-09
Identity = 29/36 (80.56%), Postives = 34/36 (94.44%), Query Frame = 0


Query: 51  DQLRMISRFKREEMKIQAWENHQKAKTEAEMRRVEV 86
           ++ + ++RFKREEMKIQAWENHQKAKTEAEMRRVEV
Sbjct: 386 EKAKYMARFKREEMKIQAWENHQKAKTEAEMRRVEV 421

[Close]

BLAST of Cucsat.G16245 vs. ExPASy TrEMBL
Match: A0A6J1DNB0 (uncharacterized protein LOC111021589 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111021589 PE=3 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 4.88e-09
Identity = 29/36 (80.56%), Postives = 34/36 (94.44%), Query Frame = 0


Query: 51  DQLRMISRFKREEMKIQAWENHQKAKTEAEMRRVEV 86
           ++ + ++RFKREEMKIQAWENHQKAKTEAEMRRVEV
Sbjct: 410 EKAKYMARFKREEMKIQAWENHQKAKTEAEMRRVEV 445

[Close]

BLAST of Cucsat.G16245 vs. ExPASy TrEMBL
Match: A0A6J1ILL9 (uncharacterized protein LOC111477491 OS=Cucurbita maxima OX=3661 GN=LOC111477491 PE=3 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 4.89e-09
Identity = 29/36 (80.56%), Postives = 34/36 (94.44%), Query Frame = 0


Query: 51  DQLRMISRFKREEMKIQAWENHQKAKTEAEMRRVEV 86
           ++ + ++RFKREEMKIQAWENHQKAKTEAEMRRVEV
Sbjct: 418 EKAKYMARFKREEMKIQAWENHQKAKTEAEMRRVEV 453

[Close]

BLAST of Cucsat.G16245 vs. ExPASy TrEMBL
Match: A0A6J1FMF2 (uncharacterized protein LOC111447138 OS=Cucurbita moschata OX=3662 GN=LOC111447138 PE=3 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 4.89e-09
Identity = 29/36 (80.56%), Postives = 34/36 (94.44%), Query Frame = 0


Query: 51  DQLRMISRFKREEMKIQAWENHQKAKTEAEMRRVEV 86
           ++ + ++RFKREEMKIQAWENHQKAKTEAEMRRVEV
Sbjct: 418 EKAKYMARFKREEMKIQAWENHQKAKTEAEMRRVEV 453

[Close]

BLAST of Cucsat.G16245 vs. ExPASy TrEMBL
Match: A0A5D3E2X4 (Flocculation protein FLO11 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold349G00340 PE=3 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 4.89e-09
Identity = 29/36 (80.56%), Postives = 34/36 (94.44%), Query Frame = 0


Query: 51  DQLRMISRFKREEMKIQAWENHQKAKTEAEMRRVEV 86
           ++ + ++RFKREEMKIQAWENHQKAKTEAEMRRVEV
Sbjct: 419 EKAKYMARFKREEMKIQAWENHQKAKTEAEMRRVEV 454

The following BLAST results are available for this feature:

BLAST of Cucsat.G16245 vs.


Match Name	E-value	Identity	Description

BLAST of Cucsat.G16245 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8648078.1	1.00e-08	80.56	hypothetical protein Csa_018858 [Cucumis sativus]	[more]
XP_022154297.1	1.00e-08	80.56	uncharacterized protein LOC111021589 isoform X2 [Momordica charantia]	[more]
XP_022154296.1	1.01e-08	80.56	uncharacterized protein LOC111021589 isoform X1 [Momordica charantia]	[more]
XP_004140405.1	1.01e-08	80.56	uncharacterized protein LOC101221140 [Cucumis sativus] >XP_031742116.1 uncharact...	[more]
XP_022941921.1	1.01e-08	80.56	uncharacterized protein LOC111447138 [Cucurbita moschata]	[more]

BLAST of Cucsat.G16245 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DLB3	4.86e-09	80.56	uncharacterized protein LOC111021589 isoform X2 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1DNB0	4.88e-09	80.56	uncharacterized protein LOC111021589 isoform X1 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1ILL9	4.89e-09	80.56	uncharacterized protein LOC111477491 OS=Cucurbita maxima OX=3661 GN=LOC111477491...	[more]
A0A6J1FMF2	4.89e-09	80.56	uncharacterized protein LOC111447138 OS=Cucurbita moschata OX=3662 GN=LOC1114471...	[more]
A0A5D3E2X4	4.89e-09	80.56	Flocculation protein FLO11 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005516	Remorin, C-terminal	PFAM	PF03763	Remorin_C	coord: 406..452 e-value: 1.9E-14 score: 53.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 160..184
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 160..179
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 300..353
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 300..345
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21
None	No IPR available	PANTHER	PTHR31471:SF1	OS02G0116800 PROTEIN	coord: 15..452
None	No IPR available	PANTHER	PTHR31471	OS02G0116800 PROTEIN	coord: 15..452

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsat.G16245.T2	Cucsat.G16245.T2	mRNA
Cucsat.G16245.T1	Cucsat.G16245.T1	mRNA
Cucsat.G16245.T6	Cucsat.G16245.T6	mRNA
Cucsat.G16245.T4	Cucsat.G16245.T4	mRNA
Cucsat.G16245.T5	Cucsat.G16245.T5	mRNA
Cucsat.G16245.T8	Cucsat.G16245.T8	mRNA
Cucsat.G16245.T7	Cucsat.G16245.T7	mRNA
Cucsat.G16245.T3	Cucsat.G16245.T3	mRNA
Cucsat.G16245.T9	Cucsat.G16245.T9	mRNA
Cucsat.G16245.T11	Cucsat.G16245.T11	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010033	response to organic substance
biological_process	GO:1901700	response to oxygen-containing compound
biological_process	GO:0006950	response to stress