Cucsat.G15619 (gene) Cucumber (B10) v3

Overview
NameCucsat.G15619
Typegene
OrganismCucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Descriptionchloroplastic group IIB intron splicing facilitator CRS2-B, chloroplastic
Locationctg2009: 3435376 .. 3437400 (+)
RNA-Seq ExpressionCucsat.G15619
SyntenyCucsat.G15619
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAATGTCCTTTGCTTTAGTTACTTGAAATTTAATTGAAGCGGTTTGGATTTTATGTGGGATTTCTACATTCTATCCAAAGAAACCAAGAAGCCCCTCCTTCTTCCTCGTTAGGGAGCTTTGTGTGTGAGTGTGTTCAATTTCTCTTCAGTTTCTTCTACGGCTTTAACAACATCCTCCACTTCTTCTGCTCGAAAATCCACTCTTCTTTTTACCAAACCATCCAATTTGCACGCAGGTTCAGTATTTTATTTTCTTCTTCGTCTTCTTCGCTTTCCTACCTTTTGCTTTCGCTTTTCCCATTTAAAGTTCAACGAAACAACATGGTTCTTCAAGGGTTTTCTTTTTCCTGCTTTAGGTTTCAATGTTATTTGCAGCATCCTTCCAAAGTGTCTCCTTATTTTCTAATTCGAGTAGTGCCCATTTCCATTTTCCTTCCACAAAGCCTCTGGTCTCCACCAGGCTCTCCGTACGAGCTTCATCGCCGGATAGTGATAGTAATGGCCTTAAAGTGGAGTATACTCCTTGGCTTATTGTTGGACTGGGTAACCCAGGAAACAAGTATCATGGGACTCGGCACAATGTAATCAGACATTCTTTAACTCTGTGTAATGAACTTTTTTGAATGAGTTTGGGATGGACTTTTCATAGTTTAGCAGTACTTTTAATTTAAACCAATCAAATTTCCTATCTAGTGCTTTCTATGAAGTGTTCCAAACTCACCATCTCTTAACGTGCAGTGACACTAAGTAACATTGCTCTTTTTGGCCTCTTGGGTTTGATTGGTCAGGTTGGTTTTGAAATGATTGATAGCATTGCTCAAGCGCAGGGAATTTTGATGAACACAATACAATCCAAAGCTCTAATTGGAATAGGTTGGCTTGTTTTCCCCTTCTATGTTATTGAATTGGGTTTCCATGTTACGTTGATTTGAAGTTCATTATGTTTCTTGAATAATCAGTACAGGTTCAATCGGAGAAGTACCAATTTTATTGGCAAAGCCTCAAACTTACATGAATTTCTGTGGAGAATCGGTTTGTCCTCTTGTCTCTCTTTTCTTCTGTTATTCAATAAGCATGGCACACAGCATACAGTTGAATGATGGTTTGTTTATATCTGAAGTGTATGGATCCAAAGCTTAGTTTGAAGCAAAATAAGCTCACCGAGCTCCTTGTATGACCTTATATTCATAGGGATAGATTGTTAGTTTCTTTCCATTGAAGCAATGACATAGCATTAATATCGCATTTTGATAAGTATGTGGACAGGAGTTCTGTGGGTTTGGATATGTTTTACGCCTTTAGATGTTCTACTTAACCTTCAATTTTGTCTGAGTGTGATTGTTAGAGGCCCAAAGTCAACTGTGATTTGCTCGAAGTGAACTAAATCTCTGATTGGATAGGTTTATTGTGATGATGGTCTGAAGATACTTAGTTTTTTCATTTTTCTAACCTTGCTGGTTACATATACTAGAAAACTCAGTTGATTCCTGTATTAGATTTTGGATGAGGCTATCATATTGTCATTCCTACAATATCTGGCTGTATTTATTTGCACCACTTTATACCTATGCACTCTATAGCGTTTTGTGGTAGAGCTTTGTTGTTTAGTAGCTGAGGATAAAAACAAATTCTTTGAGGAAACCATTGTGATTGAACTATAACGTGGTTATTGTTGCCATCTACAAATAATTTACATGATCTTATTAAATACATGGGGTTTTCTTCTCAAAATCAATTGGTAATGAGAGAAGTAACTCATCTATTTTATAAATAAATAAATGTTGCGAGTGTCCCTTGACTTGTTCAATGCTGAATCCTCAAGATGTCCCCTCAAGATGAATCTTTGGATTCACCATTCTAGAATCAAATTCAATGTTTTGTTTCCGGATTGAATATTGAATGCTCGTTTGGCTTAATAAGCTACAATAGCCAATTAGATACATGGAATTTTATCTCAAAATCAATTGGCAATGTTATGAGTAGTTGATCTCAATATCTTAAGAACCCTGCACATGGATGTTTTGTTCTACAGCTGCTAATACTATGAATCTTTCCTTCATCATTTGAATTATTTTTCCATAATGACGAGATAGTTATTCCCTTCACATGACTTTCTGCTTAAATTTTATAGGTTGGACCTCTTGCTGCACATTACCAAATACCTTTACGGCATGTCTTGTTGGTATAGTTTGCAATTTCTCCTAGTAATTCTTATGTTACTGTACAAAATGACTAGATTGAATGGAATTCTGTACATGCTTACCATTGTAGACTTATGATGAAATGAACTTGCCAAATGGCGTTCTTAGGCTGCAGCCAAAAGCAGGACATGGCCATCATAATGGGTAGGTTTATGAAATATTATTTAATATCGGTTTCACCTTTATTTTTGTTCTAGTTTTAATTGATACCTCATACTTTCAATTTTTCTAACCTTGTTATGTTGTTATACCTATGTTAATGTTTGGAAGTACTTTTGATATCACCACAAGTGGTTCTCACTTAAAATCATCATGCTTGAGAGTAACATAAAAGTACATTAGGAAAATGTCAAAAGTATATAAAGGGCTTCACGAGAAAGTTTCTACAGAGTGCTTTTGGCCCAATTGCTGGACCAGCAAGCACACTTGACAACAAATTAAAAAATGTAGAACTAAAAATAAAATTAGTTTGTAATTTAGCACCTTCTACTGAAGGCCTTATATTAAAATATCTTTTTAAAAGCACTCTCAAACATATATTTTATTGGGGCATGTGTTGGAACTTCTTTGACAAGCTTATTACATCATTAAGAAAATTGAAGCTCAATGGACTATTTCTTGTCGAATACCCACCAACTTCTCACTGAAGACTGTTAGGCCCCCTATTATTCACACATACAAATGAAGGGGCACAAAAGGTAATAACCAGGTGACAGCTTAACCTATGAGGATTGAGGAATATGTTGCTGTGGGACCCATGGGAAGGGATGGGAGTATATAAGGGAATGTTTTTGGGATTGCTGAAGGTAGGTCATATTTTGAGAAAAATTGCGGAAAGTTTGGAGGAGAAGGCCAGCATTCTTGAATTAGCTGGAGAGTCTTTCCTTTTATATTTTGACATTTCTTGTGTTATTTTCTGCTGTTTAGAGGATATCTACATGAACCTTGTTTCCGACTCTATTTCTATCAATATATAAATATAGAGTACTGTCTCTGTTCCTCTATTGTGTTGTTCTATTGTGTGTTGGGACGTTTCTGAGTGGCAGGTTTTTGGGATCCTAACAAAGACAAGGTGTTTCATATTAGCATTTTATAGTTGATTTGATTGGACATGCATTTTCCTTTATTTGCCATTCAACTTGGAAGTCATGTTCTTCTCTTATTTGTTATGAAGAAATTTATGGCACCATGTGCATAAAAAGTTGTTATTGATTACATTAGTTATACAGGGTGAAGAGTGTAATGGGACACCTGGATGGTCGACGTGAGTTTCCTCGGCTATGCATCGGTACGCATCTTAGTTAACATTAGTTTGATAATGTTCATTAAGTTTCTACTTCAGGAAGTGTAAACAACGACATTGCTCTTGTTATTACTATATCTAGGAATTGGAAACCCACCTGGGACTATGGACATGAAAGCTTTTCTCCTGCAGAAGTTCAGTTCAGTTGAGCGAAAACAGGTGAGACTTCCTTTGCATTCTAATACAGTTCCACTCTGCATTAGTTTATACGTCGCAGCCTGATGACCTCGAAGCTGTACTTGCCTGGTGGTAGAACACTATTGCTTAGTGCGTTTTTCTTTTTTGACTTTTGTTTGTGCAACCCAACAGATCGATGCAGCTCTTGAACAAGGGGTTGAGGCAGTGAGAACCCTTGCACTGAATGGATTTAGCCAAAGAGTAAACAGATTCAATTTGTCCCAGAAATACAAGTATCATAAGGTTTGATCCTCAGGAAAAGAAAGTTGTAGTTTTGATCATATTGGTAAGTGATAATGAACTCTGATAAAAATGAAGTGTAGGACTGGATATATAATTAAATTAATTGTATTTGATCATGTGAGTTAGCTACAATGGTTGACTACTTGCTGTTCTAAGCAGATCAATTCACAGGAAGATAATCTAATACCCAATTGTTCATGAATTTACATCGTACAACATAAATGATATCAACAAATTGATTTTTAGAAGTTATACCTCTT

Coding sequence (CDS)

ATGTTATTTGCAGCATCCTTCCAAAGTGTCTCCTTATTTTCTAATTCGAGTAGTGCCCATTTCCATTTTCCTTCCACAAAGCCTCTGGTCTCCACCAGGCTCTCCGTACGAGCTTCATCGCCGGATAGTGATAGTAATGGCCTTAAAGTGGAGTATACTCCTTGGCTTATTGTTGGACTGGGTAACCCAGGAAACAAGTATCATGGGACTCGGCACAATGTTGGTTTTGAAATGATTGATAGCATTGCTCAAGCGCAGGGAATTTTGATGAACACAATACAATCCAAAGCTCTAATTGGAATAGGTTCAATCGGAGAAGTACCAATTTTATTGGCAAAGCCTCAAACTTACATGAATTTCTGTGGAGAATCGGTTGGACCTCTTGCTGCACATTACCAAATACCTTTACGGCATGTCTTGTTGGTATAG

Protein sequence

MLFAASFQSVSLFSNSSSAHFHFPSTKPLVSTRLSVRASSPDSDSNGLKVEYTPWLIVGLGNPGNKYHGTRHNVGFEMIDSIAQAQGILMNTIQSKALIGIGSIGEVPILLAKPQTYMNFCGESVGPLAAHYQIPLRHVLLV
Homology
[Close]
BLAST of Cucsat.G15619 vs. ExPASy Swiss-Prot
Match: Q9LF14 (Chloroplastic group IIB intron splicing facilitator CRS2-B, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CRS2B PE=2 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 7.9e-38
Identity = 74/95 (77.89%), Postives = 83/95 (87.37%), Query Frame = 0 

Query: 9   LQPKAGHGHHNGVKSVMGHLDGRREFPRLCIGIGNPPGTMDMKAFLLQKFSSVERKQIDA 68
           LQPK G G+HNGVKSVMGHLDGRR FPRL IGIG PPG MDMKAFLLQKFS +E+KQI+ 
Sbjct: 146 LQPKGGQGYHNGVKSVMGHLDGRRNFPRLSIGIGKPPGNMDMKAFLLQKFSPLEQKQIEE 205

Query: 69  ALEQGVEAVRTLALNGFSQRVNRFNLSQKYKYHKV 104
           ALEQG EAV+TL LNGF+Q ++RFNL QKYK+HKV
Sbjct: 206 ALEQGSEAVKTLVLNGFNQGISRFNLVQKYKFHKV 240

[Close]
BLAST of Cucsat.G15619 vs. ExPASy Swiss-Prot
Match: Q9M5P4 (Chloroplastic group IIB intron splicing facilitator CRS2, chloroplastic OS=Zea mays OX=4577 GN=CRS2 PE=1 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 9.1e-34
Identity = 69/95 (72.63%), Postives = 78/95 (82.11%), Query Frame = 0 

Query: 9   LQPKAGHGHHNGVKSVMGHLDGRREFPRLCIGIGNPPGTMDMKAFLLQKFSSVERKQIDA 68
           LQ K GHG HNG+++V+ HLDGRREFPRL IGIG+PPG MD +AFLLQKFSS ER QID 
Sbjct: 162 LQKKGGHGRHNGLQNVIEHLDGRREFPRLSIGIGSPPGKMDPRAFLLQKFSSEERVQIDT 221

Query: 69  ALEQGVEAVRTLALNGFSQRVNRFNLSQKYKYHKV 104
           ALEQGV+AVRTL L GFS    RFNL QKYK+H+V
Sbjct: 222 ALEQGVDAVRTLVLKGFSGSTERFNLVQKYKFHRV 256

[Close]
BLAST of Cucsat.G15619 vs. ExPASy Swiss-Prot
Match: Q9FKN4 (Chloroplastic group IIB intron splicing facilitator CRS2-A, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CRS2A PE=2 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 4.5e-33
Identity = 66/95 (69.47%), Postives = 76/95 (80.00%), Query Frame = 0 

Query: 9   LQPKAGHGHHNGVKSVMGHLDGRREFPRLCIGIGNPPGTMDMKAFLLQKFSSVERKQIDA 68
           LQPK GH  HNG+K+V  HL+G R +PRL IGIGNPPG MDMKAFLLQKFS +ERKQ+D 
Sbjct: 152 LQPKGGHSQHNGLKNVTEHLNGCRGYPRLSIGIGNPPGNMDMKAFLLQKFSPLERKQMDE 211

Query: 69  ALEQGVEAVRTLALNGFSQRVNRFNLSQKYKYHKV 104
            LEQGVE V+TL   GFS  ++RFNL QKYK+HKV
Sbjct: 212 GLEQGVEGVKTLVEEGFSDSISRFNLGQKYKFHKV 246

[Close]
BLAST of Cucsat.G15619 vs. ExPASy Swiss-Prot
Match: Q5ZCL8 (Chloroplastic group IIB intron splicing facilitator CRS2, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0132800 PE=2 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 5.5e-31
Identity = 66/95 (69.47%), Postives = 74/95 (77.89%), Query Frame = 0 

Query: 9   LQPKAGHGHHNGVKSVMGHLDGRREFPRLCIGIGNPPGTMDMKAFLLQKFSSVERKQIDA 68
           LQ K GHG HNG+++VM  LD  RE PRL IGIG+PPG MD +AFLLQKFSS ER QID 
Sbjct: 165 LQRKGGHGRHNGLQNVMECLDSSRELPRLSIGIGSPPGKMDTRAFLLQKFSSEERLQIDT 224

Query: 69  ALEQGVEAVRTLALNGFSQRVNRFNLSQKYKYHKV 104
           ALEQGV+AVRTL L GFS  + RFNL QKYK+H V
Sbjct: 225 ALEQGVDAVRTLVLKGFSGSIERFNLVQKYKFHSV 259

[Close]
BLAST of Cucsat.G15619 vs. ExPASy Swiss-Prot
Match: Q6NLS8 (Peptidyl-tRNA hydrolase, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At5g19830 PE=2 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 5.5e-23
Identity = 53/94 (56.38%), Postives = 65/94 (69.15%), Query Frame = 0 

Query: 9   LQPKAGHGHHNGVKSVMGHLDGRREFPRLCIGIGNPPGTMDMKAFLLQKFSSVERKQIDA 68
           LQ K GHG HNG+KSVM H  G REF RL IGIG PPG MD KAFLLQKFS   R+++D 
Sbjct: 119 LQEKGGHGCHNGLKSVMNHFRGNREFARLRIGIGKPPGQMDPKAFLLQKFSMPARERMDK 178

Query: 69  ALEQGVEAVRTLALNGFSQRVNRFNLSQKYKYHK 103
           AL +GV+A++ +    F +    FN+ QKYK+ K
Sbjct: 179 ALAEGVDALKLVLAKDFGESWRLFNVEQKYKHLK 212

[Close]
BLAST of Cucsat.G15619 vs. NCBI nr
Match: XP_004145630.1 (chloroplastic group IIB intron splicing facilitator CRS2-B, chloroplastic [Cucumis sativus] >KGN57706.1 hypothetical protein Csa_010483 [Cucumis sativus])

HSP 1 Score: 196 bits (499), Expect = 4.43e-61
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0 

Query: 9   LQPKAGHGHHNGVKSVMGHLDGRREFPRLCIGIGNPPGTMDMKAFLLQKFSSVERKQIDA 68
           LQPKAGHGHHNGVKSVMGHLDGRREFPRLCIGIGNPPGTMDMKAFLLQKFSSVERKQIDA
Sbjct: 155 LQPKAGHGHHNGVKSVMGHLDGRREFPRLCIGIGNPPGTMDMKAFLLQKFSSVERKQIDA 214

Query: 69  ALEQGVEAVRTLALNGFSQRVNRFNLSQKYKYHKV 103
           ALEQGVEAVRTLALNGFSQRVNRFNLSQKYKYHKV
Sbjct: 215 ALEQGVEAVRTLALNGFSQRVNRFNLSQKYKYHKV 249

[Close]
BLAST of Cucsat.G15619 vs. NCBI nr
Match: XP_008461557.1 (PREDICTED: chloroplastic group IIB intron splicing facilitator CRS2-B, chloroplastic [Cucumis melo])

HSP 1 Score: 195 bits (495), Expect = 1.85e-60
Identity = 94/95 (98.95%), Postives = 94/95 (98.95%), Query Frame = 0 

Query: 9   LQPKAGHGHHNGVKSVMGHLDGRREFPRLCIGIGNPPGTMDMKAFLLQKFSSVERKQIDA 68
           LQPK GHGHHNGVKSVMGHLDGRREFPRLCIGIGNPPGTMDMKAFLLQKFSSVERKQIDA
Sbjct: 156 LQPKGGHGHHNGVKSVMGHLDGRREFPRLCIGIGNPPGTMDMKAFLLQKFSSVERKQIDA 215

Query: 69  ALEQGVEAVRTLALNGFSQRVNRFNLSQKYKYHKV 103
           ALEQGVEAVRTLALNGFSQRVNRFNLSQKYKYHKV
Sbjct: 216 ALEQGVEAVRTLALNGFSQRVNRFNLSQKYKYHKV 250

[Close]
BLAST of Cucsat.G15619 vs. NCBI nr
Match: XP_038899626.1 (chloroplastic group IIB intron splicing facilitator CRS2-B, chloroplastic [Benincasa hispida])

HSP 1 Score: 194 bits (492), Expect = 4.96e-60
Identity = 93/95 (97.89%), Postives = 94/95 (98.95%), Query Frame = 0 

Query: 9   LQPKAGHGHHNGVKSVMGHLDGRREFPRLCIGIGNPPGTMDMKAFLLQKFSSVERKQIDA 68
           LQPK GHGHHNGVKSVMGHLDGRREFPRLCIGIGNPPGTMDMKAFLLQKFSSVERKQIDA
Sbjct: 154 LQPKGGHGHHNGVKSVMGHLDGRREFPRLCIGIGNPPGTMDMKAFLLQKFSSVERKQIDA 213

Query: 69  ALEQGVEAVRTLALNGFSQRVNRFNLSQKYKYHKV 103
           ALEQGVEAVRTLALNGFSQRVNRFNL+QKYKYHKV
Sbjct: 214 ALEQGVEAVRTLALNGFSQRVNRFNLTQKYKYHKV 248

[Close]
BLAST of Cucsat.G15619 vs. NCBI nr
Match: XP_022148094.1 (chloroplastic group IIB intron splicing facilitator CRS2-B, chloroplastic-like [Momordica charantia])

HSP 1 Score: 189 bits (481), Expect = 2.31e-58
Identity = 91/95 (95.79%), Postives = 93/95 (97.89%), Query Frame = 0 

Query: 9   LQPKAGHGHHNGVKSVMGHLDGRREFPRLCIGIGNPPGTMDMKAFLLQKFSSVERKQIDA 68
           LQPK GHGHHNGVKSVMGHLDGRREFPRLCIGIGNPPGTMDMKAFLLQKF SVERKQIDA
Sbjct: 154 LQPKGGHGHHNGVKSVMGHLDGRREFPRLCIGIGNPPGTMDMKAFLLQKFGSVERKQIDA 213

Query: 69  ALEQGVEAVRTLALNGFSQRVNRFNLSQKYKYHKV 103
           ALEQGVEAVRTLALNGFSQRVNRFNL+QKYKY+KV
Sbjct: 214 ALEQGVEAVRTLALNGFSQRVNRFNLTQKYKYNKV 248

[Close]
BLAST of Cucsat.G15619 vs. NCBI nr
Match: XP_022998092.1 (chloroplastic group IIB intron splicing facilitator CRS2-B, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 185 bits (470), Expect = 1.08e-56
Identity = 89/95 (93.68%), Postives = 92/95 (96.84%), Query Frame = 0 

Query: 9   LQPKAGHGHHNGVKSVMGHLDGRREFPRLCIGIGNPPGTMDMKAFLLQKFSSVERKQIDA 68
           LQPK GHGHHNGVKSVMGHLDGRREFPRLCIGIGNPPGTMDMKAFLLQKFSSVERKQIDA
Sbjct: 154 LQPKGGHGHHNGVKSVMGHLDGRREFPRLCIGIGNPPGTMDMKAFLLQKFSSVERKQIDA 213

Query: 69  ALEQGVEAVRTLALNGFSQRVNRFNLSQKYKYHKV 103
           ALEQGVEAVRTLAL GFS+ V+RFNL+QKYKYHKV
Sbjct: 214 ALEQGVEAVRTLALKGFSKGVDRFNLTQKYKYHKV 248

[Close]
BLAST of Cucsat.G15619 vs. ExPASy TrEMBL
Match: A0A0A0LCC6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G257600 PE=3 SV=1)

HSP 1 Score: 196 bits (499), Expect = 2.15e-61
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0 

Query: 9   LQPKAGHGHHNGVKSVMGHLDGRREFPRLCIGIGNPPGTMDMKAFLLQKFSSVERKQIDA 68
           LQPKAGHGHHNGVKSVMGHLDGRREFPRLCIGIGNPPGTMDMKAFLLQKFSSVERKQIDA
Sbjct: 155 LQPKAGHGHHNGVKSVMGHLDGRREFPRLCIGIGNPPGTMDMKAFLLQKFSSVERKQIDA 214

Query: 69  ALEQGVEAVRTLALNGFSQRVNRFNLSQKYKYHKV 103
           ALEQGVEAVRTLALNGFSQRVNRFNLSQKYKYHKV
Sbjct: 215 ALEQGVEAVRTLALNGFSQRVNRFNLSQKYKYHKV 249

[Close]
BLAST of Cucsat.G15619 vs. ExPASy TrEMBL
Match: A0A1S3CFG5 (chloroplastic group IIB intron splicing facilitator CRS2-B, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103500129 PE=3 SV=1)

HSP 1 Score: 195 bits (495), Expect = 8.95e-61
Identity = 94/95 (98.95%), Postives = 94/95 (98.95%), Query Frame = 0 

Query: 9   LQPKAGHGHHNGVKSVMGHLDGRREFPRLCIGIGNPPGTMDMKAFLLQKFSSVERKQIDA 68
           LQPK GHGHHNGVKSVMGHLDGRREFPRLCIGIGNPPGTMDMKAFLLQKFSSVERKQIDA
Sbjct: 156 LQPKGGHGHHNGVKSVMGHLDGRREFPRLCIGIGNPPGTMDMKAFLLQKFSSVERKQIDA 215

Query: 69  ALEQGVEAVRTLALNGFSQRVNRFNLSQKYKYHKV 103
           ALEQGVEAVRTLALNGFSQRVNRFNLSQKYKYHKV
Sbjct: 216 ALEQGVEAVRTLALNGFSQRVNRFNLSQKYKYHKV 250

[Close]
BLAST of Cucsat.G15619 vs. ExPASy TrEMBL
Match: A0A6J1D2Z6 (chloroplastic group IIB intron splicing facilitator CRS2-B, chloroplastic-like OS=Momordica charantia OX=3673 GN=LOC111016856 PE=3 SV=1)

HSP 1 Score: 189 bits (481), Expect = 1.12e-58
Identity = 91/95 (95.79%), Postives = 93/95 (97.89%), Query Frame = 0 

Query: 9   LQPKAGHGHHNGVKSVMGHLDGRREFPRLCIGIGNPPGTMDMKAFLLQKFSSVERKQIDA 68
           LQPK GHGHHNGVKSVMGHLDGRREFPRLCIGIGNPPGTMDMKAFLLQKF SVERKQIDA
Sbjct: 154 LQPKGGHGHHNGVKSVMGHLDGRREFPRLCIGIGNPPGTMDMKAFLLQKFGSVERKQIDA 213

Query: 69  ALEQGVEAVRTLALNGFSQRVNRFNLSQKYKYHKV 103
           ALEQGVEAVRTLALNGFSQRVNRFNL+QKYKY+KV
Sbjct: 214 ALEQGVEAVRTLALNGFSQRVNRFNLTQKYKYNKV 248

[Close]
BLAST of Cucsat.G15619 vs. ExPASy TrEMBL
Match: A0A6J1K6X4 (chloroplastic group IIB intron splicing facilitator CRS2-B, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111492843 PE=3 SV=1)

HSP 1 Score: 185 bits (470), Expect = 5.21e-57
Identity = 89/95 (93.68%), Postives = 92/95 (96.84%), Query Frame = 0 

Query: 9   LQPKAGHGHHNGVKSVMGHLDGRREFPRLCIGIGNPPGTMDMKAFLLQKFSSVERKQIDA 68
           LQPK GHGHHNGVKSVMGHLDGRREFPRLCIGIGNPPGTMDMKAFLLQKFSSVERKQIDA
Sbjct: 154 LQPKGGHGHHNGVKSVMGHLDGRREFPRLCIGIGNPPGTMDMKAFLLQKFSSVERKQIDA 213

Query: 69  ALEQGVEAVRTLALNGFSQRVNRFNLSQKYKYHKV 103
           ALEQGVEAVRTLAL GFS+ V+RFNL+QKYKYHKV
Sbjct: 214 ALEQGVEAVRTLALKGFSKGVDRFNLTQKYKYHKV 248

[Close]
BLAST of Cucsat.G15619 vs. ExPASy TrEMBL
Match: A0A6J1G9M7 (chloroplastic group IIB intron splicing facilitator CRS2-B, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111452203 PE=3 SV=1)

HSP 1 Score: 184 bits (466), Expect = 2.10e-56
Identity = 88/95 (92.63%), Postives = 92/95 (96.84%), Query Frame = 0 

Query: 9   LQPKAGHGHHNGVKSVMGHLDGRREFPRLCIGIGNPPGTMDMKAFLLQKFSSVERKQIDA 68
           LQPK GHGHHNGVKSVMGHLDGRREFPRLCIGIGNPPGTMD+KAFLLQKFSSVERKQIDA
Sbjct: 154 LQPKGGHGHHNGVKSVMGHLDGRREFPRLCIGIGNPPGTMDIKAFLLQKFSSVERKQIDA 213

Query: 69  ALEQGVEAVRTLALNGFSQRVNRFNLSQKYKYHKV 103
           ALEQGVEAVRTLAL GFS+ V+RFNL+QKYKYHKV
Sbjct: 214 ALEQGVEAVRTLALKGFSKGVDRFNLTQKYKYHKV 248

The following BLAST results are available for this feature:
BLAST of Cucsat.G15619 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9LF147.9e-3877.89Chloroplastic group IIB intron splicing facilitator CRS2-B, chloroplastic OS=Ara... [more]
Q9M5P49.1e-3472.63Chloroplastic group IIB intron splicing facilitator CRS2, chloroplastic OS=Zea m... [more]
Q9FKN44.5e-3369.47Chloroplastic group IIB intron splicing facilitator CRS2-A, chloroplastic OS=Ara... [more]
Q5ZCL85.5e-3169.47Chloroplastic group IIB intron splicing facilitator CRS2, chloroplastic OS=Oryza... [more]
Q6NLS85.5e-2356.38Peptidyl-tRNA hydrolase, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At5g19... [more]
BLAST of Cucsat.G15619 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004145630.14.43e-61100.00chloroplastic group IIB intron splicing facilitator CRS2-B, chloroplastic [Cucum... [more]
XP_008461557.11.85e-6098.95PREDICTED: chloroplastic group IIB intron splicing facilitator CRS2-B, chloropla... [more]
XP_038899626.14.96e-6097.89chloroplastic group IIB intron splicing facilitator CRS2-B, chloroplastic [Benin... [more]
XP_022148094.12.31e-5895.79chloroplastic group IIB intron splicing facilitator CRS2-B, chloroplastic-like [... [more]
XP_022998092.11.08e-5693.68chloroplastic group IIB intron splicing facilitator CRS2-B, chloroplastic-like [... [more]
BLAST of Cucsat.G15619 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LCC62.15e-61100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G257600 PE=3 SV=1[more]
A0A1S3CFG58.95e-6198.95chloroplastic group IIB intron splicing facilitator CRS2-B, chloroplastic OS=Cuc... [more]
A0A6J1D2Z61.12e-5895.79chloroplastic group IIB intron splicing facilitator CRS2-B, chloroplastic-like O... [more]
A0A6J1K6X45.21e-5793.68chloroplastic group IIB intron splicing facilitator CRS2-B, chloroplastic-like O... [more]
A0A6J1G9M72.10e-5692.63chloroplastic group IIB intron splicing facilitator CRS2-B, chloroplastic-like O... [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001328Peptidyl-tRNA hydrolasePFAMPF01195Pept_tRNA_hydrocoord: 1..122
e-value: 6.7E-29
score: 101.0
IPR001328Peptidyl-tRNA hydrolasePANTHERPTHR17224PEPTIDYL-TRNA HYDROLASEcoord: 1..131
IPR036416Peptidyl-tRNA hydrolase superfamilyGENE3D3.40.50.1470coord: 1..132
e-value: 6.0E-42
score: 145.4
IPR036416Peptidyl-tRNA hydrolase superfamilySUPERFAMILY53178Peptidyl-tRNA hydrolase-likecoord: 1..122
NoneNo IPR availablePANTHERPTHR17224:SF3CHLOROPLASTIC GROUP IIB INTRON SPLICING FACILITATOR CRS2-B, CHLOROPLASTICcoord: 1..131
IPR018171Peptidyl-tRNA hydrolase, conserved sitePROSITEPS01196PEPT_TRNA_HYDROL_2coord: 43..53

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsat.G15619.T21Cucsat.G15619.T21mRNA
Cucsat.G15619.T24Cucsat.G15619.T24mRNA
Cucsat.G15619.T1Cucsat.G15619.T1mRNA
Cucsat.G15619.T3Cucsat.G15619.T3mRNA
Cucsat.G15619.T9Cucsat.G15619.T9mRNA
Cucsat.G15619.T4Cucsat.G15619.T4mRNA
Cucsat.G15619.T7Cucsat.G15619.T7mRNA
Cucsat.G15619.T8Cucsat.G15619.T8mRNA
Cucsat.G15619.T6Cucsat.G15619.T6mRNA
Cucsat.G15619.T23Cucsat.G15619.T23mRNA
Cucsat.G15619.T22Cucsat.G15619.T22mRNA
Cucsat.G15619.T5Cucsat.G15619.T5mRNA
Cucsat.G15619.T2Cucsat.G15619.T2mRNA
Cucsat.G15619.T15Cucsat.G15619.T15mRNA
Cucsat.G15619.T12Cucsat.G15619.T12mRNA
Cucsat.G15619.T18Cucsat.G15619.T18mRNA
Cucsat.G15619.T19Cucsat.G15619.T19mRNA
Cucsat.G15619.T10Cucsat.G15619.T10mRNA
Cucsat.G15619.T16Cucsat.G15619.T16mRNA
Cucsat.G15619.T17Cucsat.G15619.T17mRNA
Cucsat.G15619.T20Cucsat.G15619.T20mRNA
Cucsat.G15619.T25Cucsat.G15619.T25mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0004045 aminoacyl-tRNA hydrolase activity