Cucsat.G15587 (gene) Cucumber (B10) v3

Overview


Name	Cucsat.G15587
Type	gene
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	LRRNT_2 domain-containing protein
Location	ctg2009: 2530037 .. 2531615 (+)
RNA-Seq Expression	Cucsat.G15587
Synteny	Cucsat.G15587

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TTGCTTCCATCCATCTCATCCTTCTGCTTTCTATGCCTAAAAATAATGTAGCCCAACACATCAAAATGAGGTGTATCCAAAAGGAAAGAGTAGCACTTTTATCCTTCAAGCAAACACTAGTTGATGAATTTGATATACTCTCTTCTTGGGACACACATATCAACTGTGATTGTTGCAATTGGAGAGGTGTTGAATGCACCAACACTAATTCTACCACTCACCAACATATCATTACACTTGATCTTCATGGCTCATATTCTTATGAAAGGTATTTGATGGGTGAGGTTAGTTCTTCTTTGACTCAATTGTCATACCTCAACTTCTTAGATCTTAGCTTTAATCAGTTTGATCGGATTGTCCTTAAAGATATTGCTTCTCTTCTGAATTTGAATTATCTCAACTTGTCTTATAATTTTCATGTTTATACTCCCATTCCTCCTCATCTTGGAAATCTTTCAAAACTGTCTGTTCTTGATTTAAGAGGTTAATGACCTTGGTGATGCCCATGATTGGACAATTACCATTAACAAACTTCCTGCCTTGCAAAGTTTGTTTTTAAGAGGTCGTTACCTTCCAGCCCCTGTTCAATCATTTCATTATTCAAACATCAATTTCTCGAGATTTCTAGTTGAGTTGGACCTCTCTTGGAATTATATGGATCTTAGTTCCTCAAATTTTTATTCATCGATGATCAACTCAACTAATCTTGTTCATCTGAATCTTGGTTACAACAATCTACAAAGTTTGAACTTGAATGATTTTGAAAATATGACTTCACTTGTATTTCTTGGTCTGACTTCCACTCAAGTTAATTTTCGTTCTTTCAATTCCTTCGGAAGTCTATGCAACTTAAAATCATTACACTTGTCATTCAATAATATAGGAGGATTGCTATTTGATTTTCTCATAGCTTTTCCACCAAATTGAAGTCCCGGATATGTCAATGAACTACTCCACCAGTGCATTGTCTATCAATCTTGAGTCGAACAAATTTGTGGGCCGAATTCCCTCCTTTCTTCTCCAATATTCTTCACTTTTTCTTTCAAATAATAGCTTTTCTGACTTAAGTGGCTTATGTGAATTCGTTGGTGACTCTCATTTAATGCTACTTGATCTTTCTAACAACCAACTATTAGGAAAACTTCCTGGTTGTTGGTACTCCTTCGACAATTTAGTATTATTGGACTTGTCTAATAATTATTTATCTGGAGACATTCCACATTCTATGAATTATCTAACTTACTTGGATTCCTTATTTTTACGCAACAATCAATTCACTGGCGGGTTCCGTAACTTATTCAACATAACAAATTTGATTACCTTTGATGCAATGAATAATAATTTTTCTGGAGTTCTACCATCATGGATTGGATGGAAATTACCATATTTGATACATCTGAATTTGAAGTCAAATAATTTTCATGGAGATTTACCTTCAAGTCTTTGCAACCTCAGTAACATTCAAGTAATTGGATATTTCATCCAATTATATTTCTGGAAGCATTCCAACTTGCATCAATAAGCATGGCATTTGGATATATTGTGGGTTTTTGGGGAATATTTGGAAGTTTGGTAGTAC

Coding sequence (CDS)

GCTTCCATCCATCTCATCCTTCTGCTTTCTATGCCTAAAAATAATGTAGCCCAACACATCAAAATGAGGTGTATCCAAAAGGAAAGAGTAGCACTTTTATCCTTCAAGCAAACACTAGTTGATGAATTTGATATACTCTCTTCTTGGGACACACATATCAACTGTGATTGTTGCAATTGGAGAGGTGTTGAATGCACCAACACTAATTCTACCACTCACCAACATATCATTACACTTGATCTTCATGGCTCATATTCTTATGAAAGTAACATTCAAGTAATTGGATATTTCATCCAATTATATTTCTGGAAGCATTCCAACTTGCATCAATAA

Protein sequence

ASIHLILLLSMPKNNVAQHIKMRCIQKERVALLSFKQTLVDEFDILSSWDTHINCDCCNWRGVECTNTNSTTHQHIITLDLHGSYSYESNIQVIGYFIQLYFWKHSNLHQ

Homology

[Close]

BLAST of Cucsat.G15587 vs. ExPASy Swiss-Prot
Match: Q6JN46 (Receptor-like protein EIX2 OS=Solanum lycopersicum OX=4081 GN=EIX2 PE=1 SV=2)

HSP 1 Score: 60.5 bits (145), Expect = 1.4e-08
Identity = 30/62 (48.39%), Postives = 38/62 (61.29%), Query Frame = 0


Query: 21 KMRCIQKERVALLSFKQTLVDEFDILSSWDTHINCDCCNWRGVECTNTNSTTHQHIITLD 80
          K  CI+KER ALL FK+ L D+F  LS+W      +CCNW+G+EC         H+I LD
Sbjct: 32 KTLCIEKERDALLEFKRGLNDDFGRLSTWGDEE--ECCNWKGIECDKRTG----HVIVLD 87

Query: 81 LH 83
          LH
Sbjct: 92 LH 87

[Close]

BLAST of Cucsat.G15587 vs. ExPASy Swiss-Prot
Match: Q6JN47 (Receptor-like protein EIX1 OS=Solanum lycopersicum OX=4081 GN=EIX1 PE=2 SV=2)

HSP 1 Score: 60.1 bits (144), Expect = 1.8e-08
Identity = 28/67 (41.79%), Postives = 38/67 (56.72%), Query Frame = 0


Query: 21 KMRCIQKERVALLSFKQTLVDEFDILSSW-DTHINCDCCNWRGVECTNTNSTTHQHIITL 80
          K  C+ KER ALL FK+ L D FD LS+W D     +CC W+G+EC         H+  +
Sbjct: 31 KTLCLDKERDALLEFKRGLTDSFDHLSTWGDEEDKQECCKWKGIECDRRTG----HVTVI 90

Query: 81 DLHGSYS 87
          DLH  ++
Sbjct: 91 DLHNKFT 93

[Close]

BLAST of Cucsat.G15587 vs. NCBI nr
Match: XP_031739096.1 (receptor-like protein EIX2 [Cucumis sativus])

HSP 1 Score: 135 bits (340), Expect = 1.79e-38
Identity = 67/94 (71.28%), Postives = 76/94 (80.85%), Query Frame = 0


Query: 2   SIHLILLLSMPKNNV-------AQHIKMRCIQKERVALLSFKQTLVDEFDILSSWDTHIN 61
           SIHLILLLSMPK           + IKMRCI+KERVALLSFKQ +VD +DILSSWDT +N
Sbjct: 15  SIHLILLLSMPKTVAHLEFKVSVRDIKMRCIEKERVALLSFKQKVVDNYDILSSWDTDVN 74

Query: 62  CDCCNWRGVECTNTNSTTHQHIITLDLHGSYSYE 88
            DCCNWRGV+C+N N+TTHQHII LDLHGSY+YE
Sbjct: 75  SDCCNWRGVKCSNINTTTHQHIIGLDLHGSYNYE 108

[Close]

BLAST of Cucsat.G15587 vs. NCBI nr
Match: KAE8650539.1 (hypothetical protein Csa_011562 [Cucumis sativus])

HSP 1 Score: 120 bits (302), Expect = 3.21e-30
Identity = 53/67 (79.10%), Postives = 61/67 (91.04%), Query Frame = 0


Query: 22 MRCIQKERVALLSFKQTLVDEFDILSSWDTHINCDCCNWRGVECTNTNSTTHQHIITLDL 81
          MRCI+KERVALLSFKQ +VD +DILSSWDT +N DCCNWRGV+C+N N+TTHQHII LDL
Sbjct: 1  MRCIEKERVALLSFKQKVVDNYDILSSWDTDVNSDCCNWRGVKCSNINTTTHQHIIGLDL 60

Query: 82 HGSYSYE 88
          HGSY+YE
Sbjct: 61 HGSYNYE 67

[Close]

BLAST of Cucsat.G15587 vs. NCBI nr
Match: XP_038878099.1 (receptor-like protein EIX1 isoform X2 [Benincasa hispida])

HSP 1 Score: 122 bits (307), Expect = 5.98e-30
Identity = 68/109 (62.39%), Postives = 82/109 (75.23%), Query Frame = 0


Query: 1   ASIHLILLLSMPKN------NVAQHIKMRCIQKERVALLSFKQTLVDEFDILSSWDTHIN 60
           ASIHLILLLS+ KN      N +   K+RC++KERVALLSFKQ LVDE+DILSSWDT +N
Sbjct: 12  ASIHLILLLSVSKNVAHLELNGSVKEKIRCMEKERVALLSFKQKLVDEYDILSSWDTDVN 71

Query: 61  CDCCNWRGVECTNTNSTTHQHIITLDLHGSYSYESNIQVIGYFIQLYFW 103
            DCCNW+GVEC+NT +TTH HII LDLH S +YE  ++ I   I  +FW
Sbjct: 72  SDCCNWKGVECSNT-TTTHHHIIGLDLHASDNYERCLKDI---IPHWFW 116

[Close]

BLAST of Cucsat.G15587 vs. NCBI nr
Match: XP_038878097.1 (receptor-like protein EIX2 isoform X1 [Benincasa hispida] >XP_038878098.1 receptor-like protein EIX2 isoform X1 [Benincasa hispida])

HSP 1 Score: 122 bits (305), Expect = 1.80e-29
Identity = 64/94 (68.09%), Postives = 75/94 (79.79%), Query Frame = 0


Query: 1   ASIHLILLLSMPKN------NVAQHIKMRCIQKERVALLSFKQTLVDEFDILSSWDTHIN 60
           ASIHLILLLS+ KN      N +   K+RC++KERVALLSFKQ LVDE+DILSSWDT +N
Sbjct: 12  ASIHLILLLSVSKNVAHLELNGSVKEKIRCMEKERVALLSFKQKLVDEYDILSSWDTDVN 71

Query: 61  CDCCNWRGVECTNTNSTTHQHIITLDLHGSYSYE 88
            DCCNW+GVEC+NT +TTH HII LDLH S +YE
Sbjct: 72  SDCCNWKGVECSNT-TTTHHHIIGLDLHASDNYE 104

[Close]

BLAST of Cucsat.G15587 vs. NCBI nr
Match: XP_008456210.1 (PREDICTED: polygalacturonase inhibitor-like [Cucumis melo])

HSP 1 Score: 112 bits (280), Expect = 3.65e-29
Identity = 49/67 (73.13%), Postives = 57/67 (85.07%), Query Frame = 0


Query: 22 MRCIQKERVALLSFKQTLVDEFDILSSWDTHINCDCCNWRGVECTNTNSTTHQHIITLDL 81
          MRCIQKERVALLSFKQ L+D + ILSSW+T +  DCCNWRGVECTN+N+TTHQH+  L L
Sbjct: 1  MRCIQKERVALLSFKQKLIDNYHILSSWNTDVYSDCCNWRGVECTNSNATTHQHVTGLHL 60

Query: 82 HGSYSYE 88
          HGSY Y+
Sbjct: 61 HGSYDYD 67

[Close]

BLAST of Cucsat.G15587 vs. ExPASy TrEMBL
Match: A0A0A0LC52 (LRRNT_2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G232435 PE=4 SV=1)

HSP 1 Score: 183 bits (465), Expect = 3.35e-57
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 1  ASIHLILLLSMPKNNVAQHIKMRCIQKERVALLSFKQTLVDEFDILSSWDTHINCDCCNW 60
          ASIHLILLLSMPKNNVAQHIKMRCIQKERVALLSFKQTLVDEFDILSSWDTHINCDCCNW
Sbjct: 8  ASIHLILLLSMPKNNVAQHIKMRCIQKERVALLSFKQTLVDEFDILSSWDTHINCDCCNW 67

Query: 61 RGVECTNTNSTTHQHIITLDLHGSYSYE 88
          RGVECTNTNSTTHQHIITLDLHGSYSYE
Sbjct: 68 RGVECTNTNSTTHQHIITLDLHGSYSYE 95

[Close]

BLAST of Cucsat.G15587 vs. ExPASy TrEMBL
Match: A0A0A0L6M8 (LRRNT_2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G232430 PE=4 SV=1)

HSP 1 Score: 135 bits (340), Expect = 7.27e-37
Identity = 67/94 (71.28%), Postives = 76/94 (80.85%), Query Frame = 0


Query: 2   SIHLILLLSMPKNNV-------AQHIKMRCIQKERVALLSFKQTLVDEFDILSSWDTHIN 61
           SIHLILLLSMPK           + IKMRCI+KERVALLSFKQ +VD +DILSSWDT +N
Sbjct: 9   SIHLILLLSMPKTVAHLEFKVSVRDIKMRCIEKERVALLSFKQKVVDNYDILSSWDTDVN 68

Query: 62  CDCCNWRGVECTNTNSTTHQHIITLDLHGSYSYE 88
            DCCNWRGV+C+N N+TTHQHII LDLHGSY+YE
Sbjct: 69  SDCCNWRGVKCSNINTTTHQHIIGLDLHGSYNYE 102

[Close]

BLAST of Cucsat.G15587 vs. ExPASy TrEMBL
Match: A0A1S3C3D8 (polygalacturonase inhibitor-like OS=Cucumis melo OX=3656 GN=LOC103496214 PE=4 SV=1)

HSP 1 Score: 112 bits (280), Expect = 1.76e-29
Identity = 49/67 (73.13%), Postives = 57/67 (85.07%), Query Frame = 0


Query: 22 MRCIQKERVALLSFKQTLVDEFDILSSWDTHINCDCCNWRGVECTNTNSTTHQHIITLDL 81
          MRCIQKERVALLSFKQ L+D + ILSSW+T +  DCCNWRGVECTN+N+TTHQH+  L L
Sbjct: 1  MRCIQKERVALLSFKQKLIDNYHILSSWNTDVYSDCCNWRGVECTNSNATTHQHVTGLHL 60

Query: 82 HGSYSYE 88
          HGSY Y+
Sbjct: 61 HGSYDYD 67

[Close]

BLAST of Cucsat.G15587 vs. ExPASy TrEMBL
Match: A0A6J1C3A9 (polygalacturonase inhibitor-like OS=Momordica charantia OX=3673 GN=LOC111008087 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.47e-22
Identity = 49/90 (54.44%), Postives = 63/90 (70.00%), Query Frame = 0


Query: 1  ASIHLILLLSMPKN-----NVAQHIKMRCIQKERVALLSFKQTLVDEFDILSSWDTHINC 60
          ASIHL   LSMP N     N +  + ++C++ ER ALLSFKQ L+DE++ILSSW+T +N 
Sbjct: 11 ASIHLFFFLSMPINLALGFNRSMGVNIKCVESERQALLSFKQGLMDEYNILSSWETRVNN 70

Query: 61 DCCNWRGVECTNTNSTTHQHIITLDLHGSY 85
          DCCNWRGV C+  N T   H+I +DL GSY
Sbjct: 71 DCCNWRGVRCS--NKTEGYHVIGIDLRGSY 98

[Close]

BLAST of Cucsat.G15587 vs. ExPASy TrEMBL
Match: A0A6J1C6V9 (receptor-like protein 12 OS=Momordica charantia OX=3673 GN=LOC111008524 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 4.49e-15
Identity = 47/92 (51.09%), Postives = 60/92 (65.22%), Query Frame = 0


Query: 1  ASIHLILLLSMPKN-------NVAQHIKMRCIQKERVALLSFKQTLVDEFDILSSWDTHI 60
          ASIHL LLLSMP +       ++ Q+IK  C++ ER ALLSF+Q L DE+ ILSSW   +
Sbjct: 11 ASIHLFLLLSMPISLCLGFSPSLRQNIK--CVESERQALLSFQQRLTDEYGILSSW---V 70

Query: 61 NCDCCNWRGVECTNTNSTTHQHIITLDLHGSY 85
          N DCCNW  V C+  N T   H+I +DL GS+
Sbjct: 71 NNDCCNWSAVRCS--NKTEGHHVIGIDLRGSH 95

The following BLAST results are available for this feature:

BLAST of Cucsat.G15587 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6JN46	1.4e-08	48.39	Receptor-like protein EIX2 OS=Solanum lycopersicum OX=4081 GN=EIX2 PE=1 SV=2	[more]
Q6JN47	1.8e-08	41.79	Receptor-like protein EIX1 OS=Solanum lycopersicum OX=4081 GN=EIX1 PE=2 SV=2	[more]

BLAST of Cucsat.G15587 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031739096.1	1.79e-38	71.28	receptor-like protein EIX2 [Cucumis sativus]	[more]
KAE8650539.1	3.21e-30	79.10	hypothetical protein Csa_011562 [Cucumis sativus]	[more]
XP_038878099.1	5.98e-30	62.39	receptor-like protein EIX1 isoform X2 [Benincasa hispida]	[more]
XP_038878097.1	1.80e-29	68.09	receptor-like protein EIX2 isoform X1 [Benincasa hispida] >XP_038878098.1 recept...	[more]
XP_008456210.1	3.65e-29	73.13	PREDICTED: polygalacturonase inhibitor-like [Cucumis melo]	[more]

BLAST of Cucsat.G15587 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LC52	3.35e-57	100.00	LRRNT_2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G232435 PE=...	[more]
A0A0A0L6M8	7.27e-37	71.28	LRRNT_2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G232430 PE=...	[more]
A0A1S3C3D8	1.76e-29	73.13	polygalacturonase inhibitor-like OS=Cucumis melo OX=3656 GN=LOC103496214 PE=4 SV...	[more]
A0A6J1C3A9	1.47e-22	54.44	polygalacturonase inhibitor-like OS=Momordica charantia OX=3673 GN=LOC111008087 ...	[more]
A0A6J1C6V9	4.49e-15	51.09	receptor-like protein 12 OS=Momordica charantia OX=3673 GN=LOC111008524 PE=4 SV=...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013210	Leucine-rich repeat-containing N-terminal, plant-type	PFAM	PF08263	LRRNT_2	coord: 27..65 e-value: 7.1E-11 score: 42.2
IPR032675	Leucine-rich repeat domain superfamily	GENE3D	3.80.10.10	Ribonuclease Inhibitor	coord: 20..110 e-value: 5.2E-13 score: 49.9
None	No IPR available	PANTHER	PTHR48063	LRR RECEPTOR-LIKE KINASE	coord: 14..89
None	No IPR available	PANTHER	PTHR48063:SF13	RECEPTOR-LIKE PROTEIN 12 ISOFORM X1	coord: 14..89
None	No IPR available	SUPERFAMILY	52058	L domain-like	coord: 23..88

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsat.G15587.T2	Cucsat.G15587.T2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008152	metabolic process
cellular_component	GO:0016020	membrane
molecular_function	GO:0016787	hydrolase activity