Cucsat.G15536 (gene) Cucumber (B10) v3

Overview


Name	Cucsat.G15536
Type	gene
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	Unknown protein
Location	ctg2009: 564454 .. 565960 (+)
RNA-Seq Expression	Cucsat.G15536
Synteny	Cucsat.G15536

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTTACTCCTCCAAATGCTTAACCAAAATTTTCACTTCACAAACCTGGATGGAAAAACCACAAAACGATTCAAGAACTTCTCCAAAGGGAACCTTCAGACCAAGGAAAAGCCCCAACTTTAACCCTCAAATTATCCTTAAATTTAGTTCTGTAATGGGTGGTGCAACCCAAAACAAGACTTCACTAATTGCCGAAAAACTCACCCAAAACCCACCGGGGAGGAGATTGGACAGAGGGAAGATCGGCGCAGCGGGGCTCGGCGTTGGAGGAGAAGCTCGGCTCGCTCACGGCGTGCGGCCCGGAGAAAGAGATGGCGCGGCTCACAGCGTGGAGACGTCGTCGCTCACGGCTACTTGACAGACGGTCGGCGGCGTGTGGGCGAAGCGGCTGGACGTGGTGTCGTGGGAGGGAGTTGAACGGCCAGAAGCAATAGTGAGCGTCGTTCAGCGTGAGGAAGAAGAAGGAAATTTCCTAATTTCTACTCTTTTTATTCAATTGCACGTTACCCTAACAAACCCTACCTTTTAAAACAAATAAACAATCATAACAATAATGAAAACCACTTTCATTAGAAAAATGATTGAAAAGGCAAATCTGCTAAGAATATATACAACATCCAAGCTAATTAAATTAGAAATTACCTTGAATTTTGGAATGTTACAAATTTGCAATATGTTCTTTTGTTTATGGTCCTCCTTTTCATTATTCTTCTTCTCCTCTCAAATCAAAGATGGAAGCTAGAATGTGAATGAGTAAGAAGAAGAAGCAAGAGCGAGTAGAAGAACAAGAATCAAACGCAAAGAAGAAAATAAGAAACAATGCAGATTTGGTAAGGAAAAAAGATGGAAGAAGCGCAGTGGAAGGAACAAAACTTCATGGAATTATTAGGGTCTCGCATGCTTTTCATTAAGTCCCTGGAAAGAGATCATCTGTGTAAACTTCCTTTAATTTCTTTTAATTTTTTTTTAGTTCAATATGTGAGAGTAAAGATTTTAATCATTAACCTTTTAGTTGAGATATATTGAGTTTCTCTATTAATGTTTCTATTTTGTATTAATGTCTCTATTTTGACTAGTAAATTTGATTTTTTTTCATTTTGTTTTGCTATGTTATACACTTAAGATTTTCCATACAATTCTTTCAAAATGTTTTGATATTTCATAAGCAAATAATTAATCTAAAATATTTCACAACAGATTTAAGAGCAAAGTTGGCAGCCATCAATAAATAAACACACCATTCAAAAAAATAAAAAAGGAGAGAAAAAAACTAATAAACACATATCCATCCTTGAAAGCAATACTGATTTTATACAAATCAAATCCAAACTTTCTAACGATTACACACTTTATACATTAAACAGTGAGCCAACGATTAGATGGAATAAAAAGATAGATTTTAACCAAATAACTTACTGCTGCTTCTGCACAGATGTGAACTTCATTTGAGAAAATAATCGGGTGGTCGTGATCGTCTTGCTGCAAGAACCATAAACAGCTTGTCACTC

Coding sequence (CDS)

GTTTACTCCTCCAAATGCTTAACCAAAATTTTCACTTCACAAACCTGGATGGAAAAACCACAAAACGATTCAAGAACTTCTCCAAAGGGAACCTTCAGACCAAGGAAAAGCCCCAACTTTAACCCTCAAATTATCCTTAAATTTAGTTCTGTAATGGGTGGTGCAACCCAAAACAAGACTTCACTAATTGCCGAAAAACTCACCCAAAACCCACCGGGGAGGAGATTGGACAGAGGGAAGATCGGCGCAGCGGGGCTCGGCGTTGGAGGAGAAGCTCGGCTCGCTCACGGCGTGCGGCCCGGAGAAAGAGATGGCGCGGCTCACAGCGTGGAGACGTCGTCGCTCACGGCTACTTGA

Protein sequence

VYSSKCLTKIFTSQTWMEKPQNDSRTSPKGTFRPRKSPNFNPQIILKFSSVMGGATQNKTSLIAEKLTQNPPGRRLDRGKIGAAGLGVGGEARLAHGVRPGERDGAAHSVETSSLTAT

Homology

[Close]

BLAST of Cucsat.G15536 vs. NCBI nr
Match: KGN57445.1 (hypothetical protein Csa_009817 [Cucumis sativus])

HSP 1 Score: 130 bits (327), Expect = 4.47e-37
Identity = 66/67 (98.51%), Postives = 66/67 (98.51%), Query Frame = 0


Query: 52  MGGATQNKTSLIAEKLTQNPPGRRLDRGKIGAAGLGVGGEARLAHGVRPGERDGAAHSVE 111
           MGG TQNKTSLIAEKLTQNPPGRRLDRGKIGAAGLGVGGEARLAHGVRPGERDGAAHSVE
Sbjct: 1   MGGETQNKTSLIAEKLTQNPPGRRLDRGKIGAAGLGVGGEARLAHGVRPGERDGAAHSVE 60

Query: 112 TSSLTAT 118
           TSSLTAT
Sbjct: 61  TSSLTAT 67

[Close]

BLAST of Cucsat.G15536 vs. ExPASy TrEMBL
Match: A0A0A0L650 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G186715 PE=4 SV=1)

HSP 1 Score: 130 bits (327), Expect = 2.16e-37
Identity = 66/67 (98.51%), Postives = 66/67 (98.51%), Query Frame = 0


Query: 52  MGGATQNKTSLIAEKLTQNPPGRRLDRGKIGAAGLGVGGEARLAHGVRPGERDGAAHSVE 111
           MGG TQNKTSLIAEKLTQNPPGRRLDRGKIGAAGLGVGGEARLAHGVRPGERDGAAHSVE
Sbjct: 1   MGGETQNKTSLIAEKLTQNPPGRRLDRGKIGAAGLGVGGEARLAHGVRPGERDGAAHSVE 60

Query: 112 TSSLTAT 118
           TSSLTAT
Sbjct: 61  TSSLTAT 67

The following BLAST results are available for this feature:

BLAST of Cucsat.G15536 vs.


Match Name	E-value	Identity	Description

BLAST of Cucsat.G15536 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN57445.1	4.47e-37	98.51	hypothetical protein Csa_009817 [Cucumis sativus]	[more]

BLAST of Cucsat.G15536 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L650	2.16e-37	98.51	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G186715 PE=4 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 16..40
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 96..118

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsat.G15536.T1	Cucsat.G15536.T1	mRNA