Cucsat.G15531 (gene) Cucumber (B10) v3

Overview


Name	Cucsat.G15531
Type	gene
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	Pentatricopeptide repeat-containing protein
Location	ctg2009: 386410 .. 388824 (+)
RNA-Seq Expression	Cucsat.G15531
Synteny	Cucsat.G15531

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAAAAATAGTGAAATTATCTTTTGAAAAATGGGTTTTGAGATATTTGGGGGCAATTTTCCGTAGAAAAATTGGGAATGCTAATCATTTTCACTTCGATGACACACTCTCTAGCCCAAGCAACGCTCTCGTCCTTCTTGGCTTCCTACCGGTAAGCTCTCCCTTTCTCCTTATCTCTATTTCTCTCAACTTTCGTGCTTGGTTACTGAGAAAAATTCAAAAAGAAAACGAGAAATTTGTTCTTATATACGAAGTATGCTTTGTGTGGACGATGAAATTTATTCATTTCCTTGAATAGCGATTTCGTGTTTTGCCTGGTTCCTCCTAGAGCTGGAAATTTTGATTTAAATTCGTTGAAATCTATTGACATTTGATCTCATTTGCTGGTTCAGGATGCTTACTTTAGTTTACACTTTTCCAGTCACGTCCAAAAGGATAGAATCTGTAAATTTTTCCTGGTGTCCAAGCAGCTCGGTTGTAAGTCTTCTCGTCAGTTACTTCGCTGCTAGCGATGATAAACGGAAATTGGGTTTAATTTTTACGCAATTCCTGAAATTTTCTTTCACTTCTTACCCAAGAGTTATTTTGTAGGTATGCGCTGCAAAGGGTCCACGGCCGAGATATCCTCGGGTTTGGAAAACCAAAAAGAGGATCGGGACTATATCCAAGGCAGCAAAACTTGTTGATTGTGTAAGCTCTCTTGTTCCTGTCTCACCAATCCTATATATCCTCCATCCATAAGTAGGGTGACATGATGCCTATTCAAATTGGATTTTCATAGTAGAAAATCTTTTCTTTCATCTTCATTGGGGGTATATTTGGGATGCATTTTCAGACTTTTGGAATTATTTTTGACAGCATAACCAAACATCAAGCAAATTTTAAATAGTACTTTTGATTTCCAACATAAATTTTCACCATATTTAAATTCAACACCAAAGTCACCCTTAATGTAATGCAGTCTCTTTTTATTTGTTATATGATGTAACTCTAAATTTACCTTCATTCATGAGCTTGAGCTTTTGGTTTCAATGGGTGATTTAACATGGTATCTAAGTGGATGGTCTAGGTGATCCTCTATTCAAATCCATGCAACATTAGTTCCTTTTCAATCAATATGTTAGTTCCTTTTCAATTAATATTGATTTTCACTTGTTCGATAGTCTATATATTTCAAGCCACAAGTGAGGGGAGTGTTAGATGGAAAATTCAATGATCTAACATTGCTTCTTGTTGCTACTTTTGAACTTGTTAACTTCTGGGTCGACCTTTTTAAGTACTGACTTCGCATTTTAGGTAAAGGGACTGTCTAACGTCAAAGAGGAAGTCTATGGGGCTCTTGATTCCTTCATTGCCTGGGAACTAGAGTTTCCTCTTATTACAGTTAAGAAAGCCCTGAAGACCTTAGAGAACCAAAGAGAATGGAAGAGGATAATTCAGGTACATTCTTACATGTTTCTTTCATGTCCATTCTTGCTCTGCCCTTTTGTCCTGAGGATGTTGCTGACGAAATGAGTTAAGCAAAATGAGTATACTATTGTAGTTGACGAAATGGATGCTAAGTAAAGGCCAGGGAAGAACAATGGGAAGCTATTTTACACTATTAAACGCATTAGCTGAAGATGGAAGACTTGATGAAGCTGAAGAGCTTTGGAACAAATTGTTTTCTCAGCATCTGGAGAGCATTCCTCGCATATTCTTTCATAAAATGATATCCCTCTACTACGATCAGGCAATGCATGACAAGTTGTTTGAGGTATTTCGTTTTATTGCTACAGAAGTAGTTTCAACTGCATTGGTCACAAATCTCTAACCATTCCTTCCACTCCATATTGATTAAAAAAGGGATAAAAGTTATGATACATGGTGCCGATATATCATTTTTAGTTCAATCATATTGAGTTCCATGGGTAACGAAATTTAACTATGATTGACTTAGGTATTTGCTGATATGGAGGAACTTGGAGTTCAGCCAAATATGGCAATTGTCACTAAGGTTGGAAACGTTTTCCAAGAGTTGGGTATGCTCGATAAATACAAAAAACTGATGAAGAAATATCCCCCACCGAAATGGGAATATCGTTACATCAAAGGAAAACGCGTCAAAATACGAGCTAAGTATCTGTCTGAAAATGGTAATTCAAACAATGGTTTAAGTGAGCATGCCAAAATGGAGCATAGTTCAACAAATTCAATAGATGAAGCTGAAATAACTTCCGAAGATTCCAGTCTCGAAGATGATGAGGATATGAGCGAAGATCCAGATGAAATTCTGGAAGATGAACATATGTGGAGCAAATCCAATTTTGAGCATGATTTCATGGGGCTTGGGCAATTGTAAATATATACACATTGTAGTTCCTTGTCGAAGTTTGTCATAGCGTAGACTTTTATATCAGTTATTATTTGTAGTTTTAATAGACGAGATGACACATTGATCATAGAGCCAATTCCCTTTATTTCATCCTTGAATATTATAGTCCCCGATCCAACATATGGCCTAGGCTTATGATGAAACAAGGGAACAATTCTTGGTTTAAAATTTTCATTAACAAAATATACGAACGTGGTCTTATAACTCATGAGGAAAAAAA

Coding sequence (CDS)

ATGCTAATCATTTTCACTTCGATGACACACTCTCTAGCCCAAGCAACGCTCTCGTCCTTCTTGGCTTCCTACCGGATGCTTACTTTAGTTTACACTTTTCCAGTCACGTCCAAAAGGATAGAATCTGTAAATTTTTCCTGGTGTCCAAGCAGCTCGGTTGTATGCGCTGCAAAGGGTCCACGGCCGAGATATCCTCGGGTTTGGAAAACCAAAAAGAGGATCGGGACTATATCCAAGGCAGCAAAACTTGTTGATTGTGTAAAGGGACTGTCTAACGTCAAAGAGGAAGTCTATGGGGCTCTTGATTCCTTCATTGCCTGGGAACTAGAGTTTCCTCTTATTACAGTTAAGAAAGCCCTGAAGACCTTAGAGAACCAAAGAGAATGGAAGAGGATAATTCAGTTGACGAAATGGATGCTAAGTAAAGGCCAGGGAAGAACAATGGGAAGCTATTTTACACTATTAAACGCATTAGCTGAAGATGGAAGACTTGATGAAGCTGAAGAGCTTTGGAACAAATTGTTTTCTCAGCATCTGGAGAGCATTCCTCGCATATTCTTTCATAAAATGATATCCCTCTACTACGATCAGGCAATGCATGACAAGTTGTTTGAGGTATTTGCTGATATGGAGGAACTTGGAGTTCAGCCAAATATGGCAATTGTCACTAAGGTTGGAAACGTTTTCCAAGAGTTGGGTATGCTCGATAAATACAAAAAACTGATGAAGAAATATCCCCCACCGAAATGGGAATATCGTTACATCAAAGGAAAACGCGTCAAAATACGAGCTAAGTATCTGTCTGAAAATGGTAATTCAAACAATGGTTTAAGTGAGCATGCCAAAATGGAGCATAGTTCAACAAATTCAATAGATGAAGCTGAAATAACTTCCGAAGATTCCAGTCTCGAAGATGATGAGGATATGAGCGAAGATCCAGATGAAATTCTGGAAGATGAACATATGTGGAGCAAATCCAATTTTGAGCATGATTTCATGGGGCTTGGGCAATTGTAA

Protein sequence

MLIIFTSMTHSLAQATLSSFLASYRMLTLVYTFPVTSKRIESVNFSWCPSSSVVCAAKGPRPRYPRVWKTKKRIGTISKAAKLVDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQREWKRIIQLTKWMLSKGQGRTMGSYFTLLNALAEDGRLDEAEELWNKLFSQHLESIPRIFFHKMISLYYDQAMHDKLFEVFADMEELGVQPNMAIVTKVGNVFQELGMLDKYKKLMKKYPPPKWEYRYIKGKRVKIRAKYLSENGNSNNGLSEHAKMEHSSTNSIDEAEITSEDSSLEDDEDMSEDPDEILEDEHMWSKSNFEHDFMGLGQL

Homology

[Close]

BLAST of Cucsat.G15531 vs. ExPASy Swiss-Prot
Match: Q8LG95 (Pentatricopeptide repeat-containing protein At4g21190 OS=Arabidopsis thaliana OX=3702 GN=EMB1417 PE=2 SV=1)

HSP 1 Score: 366.3 bits (939), Expect = 3.4e-100
Identity = 193/293 (65.87%), Postives = 236/293 (80.55%), Query Frame = 0


Query: 1   MLTLVYTFP---VTSKRIESVNFSWCPSSSVVCAAKGPRPRYPRVWKTKKRIGTISKAAK 60
           ML+L Y+ P   + ++   +  F+  P++ VVCAA+GPRPR PRVWKT+KRIGTISKAAK
Sbjct: 1   MLSLRYSLPYLLLQTRESSTKLFTKKPNNVVVCAARGPRPRSPRVWKTRKRIGTISKAAK 60

Query: 61  LVDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQREWKRIIQLTKWMLSK 120
           ++ C+KGLSNVKEEVYGALDSFIAWELEFPL+ VKKAL  LE+++EWK+IIQ+TKWMLSK
Sbjct: 61  MIACIKGLSNVKEEVYGALDSFIAWELEFPLVIVKKALVILEDEKEWKKIIQVTKWMLSK 120

Query: 121 GQGRTMGSYFTLLNALAEDGRLDEAEELWNKLFSQHLESIPRIFFHKMISLYYDQAMHDK 180
           GQGRTMG+YF+LLNALAED RLDEAEELWNKLF +HLE  PR FF+KMIS+YY + MH K
Sbjct: 121 GQGRTMGTYFSLLNALAEDNRLDEAEELWNKLFMEHLEGTPRKFFNKMISIYYKRDMHQK 180

Query: 181 LFEVFADMEELGVQPNMAIVTKVGNVFQELGMLDKYKKLMKKYPPPKWEYRYIKGKRVKI 240
           LFEVFADMEELGV+PN+AIV+ VG VF +L M DKY+KLMKKYPPP+WE+RYIKG+RVK+
Sbjct: 181 LFEVFADMEELGVKPNVAIVSMVGKVFVKLEMKDKYEKLMKKYPPPQWEFRYIKGRRVKV 240

Query: 241 RAKYLSENGNSNNGLSEHAKMEHSSTNSIDEAEITSEDSSLEDDEDMSEDPDE 291
           +AK L+E      GLS       S  + ID  EI SE+   ED ED+SE+ ++
Sbjct: 241 KAKQLNELSEGEGGLS-------SDEDKIDN-EIESEE---EDGEDLSEEEED 282

[Close]

BLAST of Cucsat.G15531 vs. ExPASy Swiss-Prot
Match: Q2V3H0 (Pentatricopeptide repeat-containing protein At4g18975, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At4g18975 PE=2 SV=2)

HSP 1 Score: 185.3 bits (469), Expect = 1.1e-45
Identity = 96/204 (47.06%), Postives = 131/204 (64.22%), Query Frame = 0


Query: 42  VWKTKKRIGTISKAAKLVDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQ 101
           +WK     G+  KA  LV  + GL N KE VYGAL+ ++AWE+EFP+I   KAL+ L  +
Sbjct: 85  LWKKNDSAGSGQKALNLVRMLSGLPNEKEAVYGALNKWVAWEVEFPIIAAAKALQILRKR 144

Query: 102 REWKRIIQLTKWMLSKGQGRTMGSYFTLLNALAEDGRLDEAEELWNKLFSQHLESIPRIF 161
            +W R+IQL KWMLSKGQG TMG+Y  LL A   D R DEAE LWN +   H  SIPR  
Sbjct: 145 SQWHRVIQLAKWMLSKGQGATMGTYDILLLAFDMDERADEAESLWNMILHTHTRSIPRRL 204

Query: 162 FHKMISLYYDQAMHDKLFEVFADMEELGVQPNMAIVTKVGNVFQELGMLDKYKKLMKKYP 221
           F +MI+LY    +HDK+ EVFADMEEL V P+     +V   F+EL   +  K ++++Y 
Sbjct: 205 FARMIALYAHHDLHDKVIEVFADMEELKVSPDEDSARRVARAFRELNQEENRKLILRRY- 264

Query: 222 PPKWEYRYIKGKRVKIRAKYLSEN 246
             +++Y Y  G+RV+++ +Y SE+
Sbjct: 265 LSEYKYIYFNGERVRVK-RYFSED 286

[Close]

BLAST of Cucsat.G15531 vs. NCBI nr
Match: XP_004140747.2 (pentatricopeptide repeat-containing protein At4g21190 [Cucumis sativus] >KGN57423.1 hypothetical protein Csa_010957 [Cucumis sativus])

HSP 1 Score: 621 bits (1602), Expect = 6.23e-224
Identity = 313/313 (100.00%), Postives = 313/313 (100.00%), Query Frame = 0


Query: 1   MLTLVYTFPVTSKRIESVNFSWCPSSSVVCAAKGPRPRYPRVWKTKKRIGTISKAAKLVD 60
           MLTLVYTFPVTSKRIESVNFSWCPSSSVVCAAKGPRPRYPRVWKTKKRIGTISKAAKLVD
Sbjct: 26  MLTLVYTFPVTSKRIESVNFSWCPSSSVVCAAKGPRPRYPRVWKTKKRIGTISKAAKLVD 85

Query: 61  CVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQREWKRIIQLTKWMLSKGQG 120
           CVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQREWKRIIQLTKWMLSKGQG
Sbjct: 86  CVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQREWKRIIQLTKWMLSKGQG 145

Query: 121 RTMGSYFTLLNALAEDGRLDEAEELWNKLFSQHLESIPRIFFHKMISLYYDQAMHDKLFE 180
           RTMGSYFTLLNALAEDGRLDEAEELWNKLFSQHLESIPRIFFHKMISLYYDQAMHDKLFE
Sbjct: 146 RTMGSYFTLLNALAEDGRLDEAEELWNKLFSQHLESIPRIFFHKMISLYYDQAMHDKLFE 205

Query: 181 VFADMEELGVQPNMAIVTKVGNVFQELGMLDKYKKLMKKYPPPKWEYRYIKGKRVKIRAK 240
           VFADMEELGVQPNMAIVTKVGNVFQELGMLDKYKKLMKKYPPPKWEYRYIKGKRVKIRAK
Sbjct: 206 VFADMEELGVQPNMAIVTKVGNVFQELGMLDKYKKLMKKYPPPKWEYRYIKGKRVKIRAK 265

Query: 241 YLSENGNSNNGLSEHAKMEHSSTNSIDEAEITSEDSSLEDDEDMSEDPDEILEDEHMWSK 300
           YLSENGNSNNGLSEHAKMEHSSTNSIDEAEITSEDSSLEDDEDMSEDPDEILEDEHMWSK
Sbjct: 266 YLSENGNSNNGLSEHAKMEHSSTNSIDEAEITSEDSSLEDDEDMSEDPDEILEDEHMWSK 325

Query: 301 SNFEHDFMGLGQL 313
           SNFEHDFMGLGQL
Sbjct: 326 SNFEHDFMGLGQL 338

[Close]

BLAST of Cucsat.G15531 vs. NCBI nr
Match: TYK23004.1 (pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 595 bits (1535), Expect = 7.82e-214
Identity = 297/313 (94.89%), Postives = 307/313 (98.08%), Query Frame = 0


Query: 1   MLTLVYTFPVTSKRIESVNFSWCPSSSVVCAAKGPRPRYPRVWKTKKRIGTISKAAKLVD 60
           MLTLVYTFPVTSKRIESVNFSWCPSSSVVCAAKGPRPRYPRVWKT+KRIGTISKAAKLVD
Sbjct: 19  MLTLVYTFPVTSKRIESVNFSWCPSSSVVCAAKGPRPRYPRVWKTRKRIGTISKAAKLVD 78

Query: 61  CVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQREWKRIIQLTKWMLSKGQG 120
           CVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQREWKRIIQLTKWMLSKGQG
Sbjct: 79  CVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQREWKRIIQLTKWMLSKGQG 138

Query: 121 RTMGSYFTLLNALAEDGRLDEAEELWNKLFSQHLESIPRIFFHKMISLYYDQAMHDKLFE 180
           RTMGSYFTLLNAL EDGRLDEAEELWNKLFSQ+LES+PRIFFHKMISLYYD+AMHDKLFE
Sbjct: 139 RTMGSYFTLLNALVEDGRLDEAEELWNKLFSQYLESMPRIFFHKMISLYYDRAMHDKLFE 198

Query: 181 VFADMEELGVQPNMAIVTKVGNVFQELGMLDKYKKLMKKYPPPKWEYRYIKGKRVKIRAK 240
           VFADMEELGVQPNMAIVTKVGN+FQELGMLDKY+KLMKKYPPPKWEYRYIKGKRVKIR K
Sbjct: 199 VFADMEELGVQPNMAIVTKVGNIFQELGMLDKYEKLMKKYPPPKWEYRYIKGKRVKIRTK 258

Query: 241 YLSENGNSNNGLSEHAKMEHSSTNSIDEAEITSEDSSLEDDEDMSEDPDEILEDEHMWSK 300
           YLSENGNS NGLSE  KMEHSSTNS+DEAEITSEDSSLEDDE++ +DPDEILEDEHMWSK
Sbjct: 259 YLSENGNSKNGLSEQNKMEHSSTNSLDEAEITSEDSSLEDDEEIGKDPDEILEDEHMWSK 318

Query: 301 SNFEHDFMGLGQL 313
           SNFEHDFMGLGQL
Sbjct: 319 SNFEHDFMGLGQL 331

[Close]

BLAST of Cucsat.G15531 vs. NCBI nr
Match: KAA0033710.1 (pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 595 bits (1533), Expect = 1.58e-213
Identity = 297/313 (94.89%), Postives = 307/313 (98.08%), Query Frame = 0


Query: 1   MLTLVYTFPVTSKRIESVNFSWCPSSSVVCAAKGPRPRYPRVWKTKKRIGTISKAAKLVD 60
           MLTLVYTFPVTSKRIESVNFSWCPSSSVVCAAKGPRPRYPRVWKT+KRIGTISKAAKLVD
Sbjct: 19  MLTLVYTFPVTSKRIESVNFSWCPSSSVVCAAKGPRPRYPRVWKTRKRIGTISKAAKLVD 78

Query: 61  CVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQREWKRIIQLTKWMLSKGQG 120
           CVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQREWKRIIQLTKWMLSKGQG
Sbjct: 79  CVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQREWKRIIQLTKWMLSKGQG 138

Query: 121 RTMGSYFTLLNALAEDGRLDEAEELWNKLFSQHLESIPRIFFHKMISLYYDQAMHDKLFE 180
           RTMGSYFTLLNAL EDGRLDEAEELWNKLFSQ+LES+PRIFFHKMISLYYD+AMHDKLFE
Sbjct: 139 RTMGSYFTLLNALVEDGRLDEAEELWNKLFSQYLESMPRIFFHKMISLYYDRAMHDKLFE 198

Query: 181 VFADMEELGVQPNMAIVTKVGNVFQELGMLDKYKKLMKKYPPPKWEYRYIKGKRVKIRAK 240
           VFADMEELGVQPNMAIVTKVGN+FQELGMLDKY+KLMKKYPPPKWEYRYIKGKRVKIR K
Sbjct: 199 VFADMEELGVQPNMAIVTKVGNIFQELGMLDKYEKLMKKYPPPKWEYRYIKGKRVKIRTK 258

Query: 241 YLSENGNSNNGLSEHAKMEHSSTNSIDEAEITSEDSSLEDDEDMSEDPDEILEDEHMWSK 300
           YLSENGNS NGLSE  KMEHSSTNS+DEAEITSEDSSLEDDE++ +DPDEILEDEHMWSK
Sbjct: 259 YLSENGNSMNGLSEQNKMEHSSTNSLDEAEITSEDSSLEDDEEIGKDPDEILEDEHMWSK 318

Query: 301 SNFEHDFMGLGQL 313
           SNFEHDFMGLGQL
Sbjct: 319 SNFEHDFMGLGQL 331

[Close]

BLAST of Cucsat.G15531 vs. NCBI nr
Match: XP_008439301.1 (PREDICTED: pentatricopeptide repeat-containing protein At4g21190 isoform X2 [Cucumis melo])

HSP 1 Score: 595 bits (1533), Expect = 2.04e-213
Identity = 297/313 (94.89%), Postives = 307/313 (98.08%), Query Frame = 0


Query: 1   MLTLVYTFPVTSKRIESVNFSWCPSSSVVCAAKGPRPRYPRVWKTKKRIGTISKAAKLVD 60
           MLTLVYTFPVTSKRIESVNFSWCPSSSVVCAAKGPRPRYPRVWKT+KRIGTISKAAKLVD
Sbjct: 26  MLTLVYTFPVTSKRIESVNFSWCPSSSVVCAAKGPRPRYPRVWKTRKRIGTISKAAKLVD 85

Query: 61  CVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQREWKRIIQLTKWMLSKGQG 120
           CVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQREWKRIIQLTKWMLSKGQG
Sbjct: 86  CVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQREWKRIIQLTKWMLSKGQG 145

Query: 121 RTMGSYFTLLNALAEDGRLDEAEELWNKLFSQHLESIPRIFFHKMISLYYDQAMHDKLFE 180
           RTMGSYFTLLNAL EDGRLDEAEELWNKLFSQ+LES+PRIFFHKMISLYYD+AMHDKLFE
Sbjct: 146 RTMGSYFTLLNALVEDGRLDEAEELWNKLFSQYLESMPRIFFHKMISLYYDRAMHDKLFE 205

Query: 181 VFADMEELGVQPNMAIVTKVGNVFQELGMLDKYKKLMKKYPPPKWEYRYIKGKRVKIRAK 240
           VFADMEELGVQPNMAIVTKVGN+FQELGMLDKY+KLMKKYPPPKWEYRYIKGKRVKIR K
Sbjct: 206 VFADMEELGVQPNMAIVTKVGNIFQELGMLDKYEKLMKKYPPPKWEYRYIKGKRVKIRTK 265

Query: 241 YLSENGNSNNGLSEHAKMEHSSTNSIDEAEITSEDSSLEDDEDMSEDPDEILEDEHMWSK 300
           YLSENGNS NGLSE  KMEHSSTNS+DEAEITSEDSSLEDDE++ +DPDEILEDEHMWSK
Sbjct: 266 YLSENGNSMNGLSEQNKMEHSSTNSLDEAEITSEDSSLEDDEEIGKDPDEILEDEHMWSK 325

Query: 301 SNFEHDFMGLGQL 313
           SNFEHDFMGLGQL
Sbjct: 326 SNFEHDFMGLGQL 338

[Close]

BLAST of Cucsat.G15531 vs. NCBI nr
Match: XP_016899030.1 (PREDICTED: pentatricopeptide repeat-containing protein At4g21190 isoform X1 [Cucumis melo])

HSP 1 Score: 595 bits (1533), Expect = 3.69e-213
Identity = 297/313 (94.89%), Postives = 307/313 (98.08%), Query Frame = 0


Query: 1   MLTLVYTFPVTSKRIESVNFSWCPSSSVVCAAKGPRPRYPRVWKTKKRIGTISKAAKLVD 60
           MLTLVYTFPVTSKRIESVNFSWCPSSSVVCAAKGPRPRYPRVWKT+KRIGTISKAAKLVD
Sbjct: 42  MLTLVYTFPVTSKRIESVNFSWCPSSSVVCAAKGPRPRYPRVWKTRKRIGTISKAAKLVD 101

Query: 61  CVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQREWKRIIQLTKWMLSKGQG 120
           CVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQREWKRIIQLTKWMLSKGQG
Sbjct: 102 CVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQREWKRIIQLTKWMLSKGQG 161

Query: 121 RTMGSYFTLLNALAEDGRLDEAEELWNKLFSQHLESIPRIFFHKMISLYYDQAMHDKLFE 180
           RTMGSYFTLLNAL EDGRLDEAEELWNKLFSQ+LES+PRIFFHKMISLYYD+AMHDKLFE
Sbjct: 162 RTMGSYFTLLNALVEDGRLDEAEELWNKLFSQYLESMPRIFFHKMISLYYDRAMHDKLFE 221

Query: 181 VFADMEELGVQPNMAIVTKVGNVFQELGMLDKYKKLMKKYPPPKWEYRYIKGKRVKIRAK 240
           VFADMEELGVQPNMAIVTKVGN+FQELGMLDKY+KLMKKYPPPKWEYRYIKGKRVKIR K
Sbjct: 222 VFADMEELGVQPNMAIVTKVGNIFQELGMLDKYEKLMKKYPPPKWEYRYIKGKRVKIRTK 281

Query: 241 YLSENGNSNNGLSEHAKMEHSSTNSIDEAEITSEDSSLEDDEDMSEDPDEILEDEHMWSK 300
           YLSENGNS NGLSE  KMEHSSTNS+DEAEITSEDSSLEDDE++ +DPDEILEDEHMWSK
Sbjct: 282 YLSENGNSMNGLSEQNKMEHSSTNSLDEAEITSEDSSLEDDEEIGKDPDEILEDEHMWSK 341

Query: 301 SNFEHDFMGLGQL 313
           SNFEHDFMGLGQL
Sbjct: 342 SNFEHDFMGLGQL 354

[Close]

BLAST of Cucsat.G15531 vs. ExPASy TrEMBL
Match: A0A0A0L6Q9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G184050 PE=4 SV=1)

HSP 1 Score: 621 bits (1602), Expect = 3.02e-224
Identity = 313/313 (100.00%), Postives = 313/313 (100.00%), Query Frame = 0


Query: 1   MLTLVYTFPVTSKRIESVNFSWCPSSSVVCAAKGPRPRYPRVWKTKKRIGTISKAAKLVD 60
           MLTLVYTFPVTSKRIESVNFSWCPSSSVVCAAKGPRPRYPRVWKTKKRIGTISKAAKLVD
Sbjct: 26  MLTLVYTFPVTSKRIESVNFSWCPSSSVVCAAKGPRPRYPRVWKTKKRIGTISKAAKLVD 85

Query: 61  CVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQREWKRIIQLTKWMLSKGQG 120
           CVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQREWKRIIQLTKWMLSKGQG
Sbjct: 86  CVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQREWKRIIQLTKWMLSKGQG 145

Query: 121 RTMGSYFTLLNALAEDGRLDEAEELWNKLFSQHLESIPRIFFHKMISLYYDQAMHDKLFE 180
           RTMGSYFTLLNALAEDGRLDEAEELWNKLFSQHLESIPRIFFHKMISLYYDQAMHDKLFE
Sbjct: 146 RTMGSYFTLLNALAEDGRLDEAEELWNKLFSQHLESIPRIFFHKMISLYYDQAMHDKLFE 205

Query: 181 VFADMEELGVQPNMAIVTKVGNVFQELGMLDKYKKLMKKYPPPKWEYRYIKGKRVKIRAK 240
           VFADMEELGVQPNMAIVTKVGNVFQELGMLDKYKKLMKKYPPPKWEYRYIKGKRVKIRAK
Sbjct: 206 VFADMEELGVQPNMAIVTKVGNVFQELGMLDKYKKLMKKYPPPKWEYRYIKGKRVKIRAK 265

Query: 241 YLSENGNSNNGLSEHAKMEHSSTNSIDEAEITSEDSSLEDDEDMSEDPDEILEDEHMWSK 300
           YLSENGNSNNGLSEHAKMEHSSTNSIDEAEITSEDSSLEDDEDMSEDPDEILEDEHMWSK
Sbjct: 266 YLSENGNSNNGLSEHAKMEHSSTNSIDEAEITSEDSSLEDDEDMSEDPDEILEDEHMWSK 325

Query: 301 SNFEHDFMGLGQL 313
           SNFEHDFMGLGQL
Sbjct: 326 SNFEHDFMGLGQL 338

[Close]

BLAST of Cucsat.G15531 vs. ExPASy TrEMBL
Match: A0A5D3DHA7 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold386G001120 PE=4 SV=1)

HSP 1 Score: 595 bits (1535), Expect = 3.79e-214
Identity = 297/313 (94.89%), Postives = 307/313 (98.08%), Query Frame = 0


Query: 1   MLTLVYTFPVTSKRIESVNFSWCPSSSVVCAAKGPRPRYPRVWKTKKRIGTISKAAKLVD 60
           MLTLVYTFPVTSKRIESVNFSWCPSSSVVCAAKGPRPRYPRVWKT+KRIGTISKAAKLVD
Sbjct: 19  MLTLVYTFPVTSKRIESVNFSWCPSSSVVCAAKGPRPRYPRVWKTRKRIGTISKAAKLVD 78

Query: 61  CVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQREWKRIIQLTKWMLSKGQG 120
           CVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQREWKRIIQLTKWMLSKGQG
Sbjct: 79  CVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQREWKRIIQLTKWMLSKGQG 138

Query: 121 RTMGSYFTLLNALAEDGRLDEAEELWNKLFSQHLESIPRIFFHKMISLYYDQAMHDKLFE 180
           RTMGSYFTLLNAL EDGRLDEAEELWNKLFSQ+LES+PRIFFHKMISLYYD+AMHDKLFE
Sbjct: 139 RTMGSYFTLLNALVEDGRLDEAEELWNKLFSQYLESMPRIFFHKMISLYYDRAMHDKLFE 198

Query: 181 VFADMEELGVQPNMAIVTKVGNVFQELGMLDKYKKLMKKYPPPKWEYRYIKGKRVKIRAK 240
           VFADMEELGVQPNMAIVTKVGN+FQELGMLDKY+KLMKKYPPPKWEYRYIKGKRVKIR K
Sbjct: 199 VFADMEELGVQPNMAIVTKVGNIFQELGMLDKYEKLMKKYPPPKWEYRYIKGKRVKIRTK 258

Query: 241 YLSENGNSNNGLSEHAKMEHSSTNSIDEAEITSEDSSLEDDEDMSEDPDEILEDEHMWSK 300
           YLSENGNS NGLSE  KMEHSSTNS+DEAEITSEDSSLEDDE++ +DPDEILEDEHMWSK
Sbjct: 259 YLSENGNSKNGLSEQNKMEHSSTNSLDEAEITSEDSSLEDDEEIGKDPDEILEDEHMWSK 318

Query: 301 SNFEHDFMGLGQL 313
           SNFEHDFMGLGQL
Sbjct: 319 SNFEHDFMGLGQL 331

[Close]

BLAST of Cucsat.G15531 vs. ExPASy TrEMBL
Match: A0A5A7SS06 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold239G001830 PE=4 SV=1)

HSP 1 Score: 595 bits (1533), Expect = 7.64e-214
Identity = 297/313 (94.89%), Postives = 307/313 (98.08%), Query Frame = 0


Query: 1   MLTLVYTFPVTSKRIESVNFSWCPSSSVVCAAKGPRPRYPRVWKTKKRIGTISKAAKLVD 60
           MLTLVYTFPVTSKRIESVNFSWCPSSSVVCAAKGPRPRYPRVWKT+KRIGTISKAAKLVD
Sbjct: 19  MLTLVYTFPVTSKRIESVNFSWCPSSSVVCAAKGPRPRYPRVWKTRKRIGTISKAAKLVD 78

Query: 61  CVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQREWKRIIQLTKWMLSKGQG 120
           CVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQREWKRIIQLTKWMLSKGQG
Sbjct: 79  CVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQREWKRIIQLTKWMLSKGQG 138

Query: 121 RTMGSYFTLLNALAEDGRLDEAEELWNKLFSQHLESIPRIFFHKMISLYYDQAMHDKLFE 180
           RTMGSYFTLLNAL EDGRLDEAEELWNKLFSQ+LES+PRIFFHKMISLYYD+AMHDKLFE
Sbjct: 139 RTMGSYFTLLNALVEDGRLDEAEELWNKLFSQYLESMPRIFFHKMISLYYDRAMHDKLFE 198

Query: 181 VFADMEELGVQPNMAIVTKVGNVFQELGMLDKYKKLMKKYPPPKWEYRYIKGKRVKIRAK 240
           VFADMEELGVQPNMAIVTKVGN+FQELGMLDKY+KLMKKYPPPKWEYRYIKGKRVKIR K
Sbjct: 199 VFADMEELGVQPNMAIVTKVGNIFQELGMLDKYEKLMKKYPPPKWEYRYIKGKRVKIRTK 258

Query: 241 YLSENGNSNNGLSEHAKMEHSSTNSIDEAEITSEDSSLEDDEDMSEDPDEILEDEHMWSK 300
           YLSENGNS NGLSE  KMEHSSTNS+DEAEITSEDSSLEDDE++ +DPDEILEDEHMWSK
Sbjct: 259 YLSENGNSMNGLSEQNKMEHSSTNSLDEAEITSEDSSLEDDEEIGKDPDEILEDEHMWSK 318

Query: 301 SNFEHDFMGLGQL 313
           SNFEHDFMGLGQL
Sbjct: 319 SNFEHDFMGLGQL 331

[Close]

BLAST of Cucsat.G15531 vs. ExPASy TrEMBL
Match: A0A1S3AY30 (pentatricopeptide repeat-containing protein At4g21190 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103484127 PE=4 SV=1)

HSP 1 Score: 595 bits (1533), Expect = 9.90e-214
Identity = 297/313 (94.89%), Postives = 307/313 (98.08%), Query Frame = 0


Query: 1   MLTLVYTFPVTSKRIESVNFSWCPSSSVVCAAKGPRPRYPRVWKTKKRIGTISKAAKLVD 60
           MLTLVYTFPVTSKRIESVNFSWCPSSSVVCAAKGPRPRYPRVWKT+KRIGTISKAAKLVD
Sbjct: 26  MLTLVYTFPVTSKRIESVNFSWCPSSSVVCAAKGPRPRYPRVWKTRKRIGTISKAAKLVD 85

Query: 61  CVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQREWKRIIQLTKWMLSKGQG 120
           CVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQREWKRIIQLTKWMLSKGQG
Sbjct: 86  CVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQREWKRIIQLTKWMLSKGQG 145

Query: 121 RTMGSYFTLLNALAEDGRLDEAEELWNKLFSQHLESIPRIFFHKMISLYYDQAMHDKLFE 180
           RTMGSYFTLLNAL EDGRLDEAEELWNKLFSQ+LES+PRIFFHKMISLYYD+AMHDKLFE
Sbjct: 146 RTMGSYFTLLNALVEDGRLDEAEELWNKLFSQYLESMPRIFFHKMISLYYDRAMHDKLFE 205

Query: 181 VFADMEELGVQPNMAIVTKVGNVFQELGMLDKYKKLMKKYPPPKWEYRYIKGKRVKIRAK 240
           VFADMEELGVQPNMAIVTKVGN+FQELGMLDKY+KLMKKYPPPKWEYRYIKGKRVKIR K
Sbjct: 206 VFADMEELGVQPNMAIVTKVGNIFQELGMLDKYEKLMKKYPPPKWEYRYIKGKRVKIRTK 265

Query: 241 YLSENGNSNNGLSEHAKMEHSSTNSIDEAEITSEDSSLEDDEDMSEDPDEILEDEHMWSK 300
           YLSENGNS NGLSE  KMEHSSTNS+DEAEITSEDSSLEDDE++ +DPDEILEDEHMWSK
Sbjct: 266 YLSENGNSMNGLSEQNKMEHSSTNSLDEAEITSEDSSLEDDEEIGKDPDEILEDEHMWSK 325

Query: 301 SNFEHDFMGLGQL 313
           SNFEHDFMGLGQL
Sbjct: 326 SNFEHDFMGLGQL 338

[Close]

BLAST of Cucsat.G15531 vs. ExPASy TrEMBL
Match: A0A1S4DTK8 (pentatricopeptide repeat-containing protein At4g21190 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103484127 PE=4 SV=1)

HSP 1 Score: 595 bits (1533), Expect = 1.79e-213
Identity = 297/313 (94.89%), Postives = 307/313 (98.08%), Query Frame = 0


Query: 1   MLTLVYTFPVTSKRIESVNFSWCPSSSVVCAAKGPRPRYPRVWKTKKRIGTISKAAKLVD 60
           MLTLVYTFPVTSKRIESVNFSWCPSSSVVCAAKGPRPRYPRVWKT+KRIGTISKAAKLVD
Sbjct: 42  MLTLVYTFPVTSKRIESVNFSWCPSSSVVCAAKGPRPRYPRVWKTRKRIGTISKAAKLVD 101

Query: 61  CVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQREWKRIIQLTKWMLSKGQG 120
           CVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQREWKRIIQLTKWMLSKGQG
Sbjct: 102 CVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQREWKRIIQLTKWMLSKGQG 161

Query: 121 RTMGSYFTLLNALAEDGRLDEAEELWNKLFSQHLESIPRIFFHKMISLYYDQAMHDKLFE 180
           RTMGSYFTLLNAL EDGRLDEAEELWNKLFSQ+LES+PRIFFHKMISLYYD+AMHDKLFE
Sbjct: 162 RTMGSYFTLLNALVEDGRLDEAEELWNKLFSQYLESMPRIFFHKMISLYYDRAMHDKLFE 221

Query: 181 VFADMEELGVQPNMAIVTKVGNVFQELGMLDKYKKLMKKYPPPKWEYRYIKGKRVKIRAK 240
           VFADMEELGVQPNMAIVTKVGN+FQELGMLDKY+KLMKKYPPPKWEYRYIKGKRVKIR K
Sbjct: 222 VFADMEELGVQPNMAIVTKVGNIFQELGMLDKYEKLMKKYPPPKWEYRYIKGKRVKIRTK 281

Query: 241 YLSENGNSNNGLSEHAKMEHSSTNSIDEAEITSEDSSLEDDEDMSEDPDEILEDEHMWSK 300
           YLSENGNS NGLSE  KMEHSSTNS+DEAEITSEDSSLEDDE++ +DPDEILEDEHMWSK
Sbjct: 282 YLSENGNSMNGLSEQNKMEHSSTNSLDEAEITSEDSSLEDDEEIGKDPDEILEDEHMWSK 341

Query: 301 SNFEHDFMGLGQL 313
           SNFEHDFMGLGQL
Sbjct: 342 SNFEHDFMGLGQL 354

The following BLAST results are available for this feature:

BLAST of Cucsat.G15531 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LG95	3.4e-100	65.87	Pentatricopeptide repeat-containing protein At4g21190 OS=Arabidopsis thaliana OX...	[more]
Q2V3H0	1.1e-45	47.06	Pentatricopeptide repeat-containing protein At4g18975, chloroplastic OS=Arabidop...	[more]

BLAST of Cucsat.G15531 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004140747.2	6.23e-224	100.00	pentatricopeptide repeat-containing protein At4g21190 [Cucumis sativus] >KGN5742...	[more]
TYK23004.1	7.82e-214	94.89	pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]	[more]
KAA0033710.1	1.58e-213	94.89	pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]	[more]
XP_008439301.1	2.04e-213	94.89	PREDICTED: pentatricopeptide repeat-containing protein At4g21190 isoform X2 [Cuc...	[more]
XP_016899030.1	3.69e-213	94.89	PREDICTED: pentatricopeptide repeat-containing protein At4g21190 isoform X1 [Cuc...	[more]

BLAST of Cucsat.G15531 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L6Q9	3.02e-224	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G184050 PE=4 SV=1	[more]
A0A5D3DHA7	3.79e-214	94.89	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A5A7SS06	7.64e-214	94.89	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A1S3AY30	9.90e-214	94.89	pentatricopeptide repeat-containing protein At4g21190 isoform X2 OS=Cucumis melo...	[more]
A0A1S4DTK8	1.79e-213	94.89	pentatricopeptide repeat-containing protein At4g21190 isoform X1 OS=Cucumis melo...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 78..253 e-value: 1.9E-15 score: 58.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 271..296
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 271..323
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 297..317
None	No IPR available	PANTHER	PTHR46782:SF1	OS01G0757700 PROTEIN	coord: 27..311
IPR044646	Pentatricopeptide repeat-containing protein EMB1417-like	PANTHER	PTHR46782	OS01G0757700 PROTEIN	coord: 27..311
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 147..181 score: 8.977363

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsat.G15531.T1	Cucsat.G15531.T1	mRNA
Cucsat.G15531.T2	Cucsat.G15531.T2	mRNA
Cucsat.G15531.T9	Cucsat.G15531.T9	mRNA
Cucsat.G15531.T4	Cucsat.G15531.T4	mRNA
Cucsat.G15531.T7	Cucsat.G15531.T7	mRNA
Cucsat.G15531.T5	Cucsat.G15531.T5	mRNA
Cucsat.G15531.T3	Cucsat.G15531.T3	mRNA
Cucsat.G15531.T8	Cucsat.G15531.T8	mRNA
Cucsat.G15531.T11	Cucsat.G15531.T11	mRNA
Cucsat.G15531.T10	Cucsat.G15531.T10	mRNA
Cucsat.G15531.T6	Cucsat.G15531.T6	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding