Cucsat.G15086 (gene) Cucumber (B10) v3

Overview


Name	Cucsat.G15086
Type	gene
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	RNA-binding (RRM/RBD/RNP motifs) family protein
Location	ctg197: 339749 .. 342314 (-)
RNA-Seq Expression	Cucsat.G15086
Synteny	Cucsat.G15086

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAATGGTTGTGTGTGTGTGTTCACGTTGATGATAGATAGCCTTGAGCAATTGCCTATCTGTCAGCCTCTCTGTCTCTCTGTCTTCTTCCATTTCTTTATTTCCATACCACTCTGTTTCTTCACAACACTTCTCTTTATTTAACCTTCTTCTTCTCTTCATCACCACCATTTTTCCTCCCATTTTAACTTAACTACTTCTAATTACTTCCTCATTAGCTGTTTTGTTCCATGACGATGATGACCACCACCACCACCAACAACAACAGTAGTACCAATGCAGGTTTGTTCGGCGATACCACTTTGACGAAAGTCTTCGTTGGTGGGTTAGCTTGGGAAACACCAAAGGAAGCCATGAGAGATCACTTCCACAAGTTCGGTGAAATTCTCGAAGCGGTTATCATCTCTGATAAACTCACCGGCAGATCCAAGGGATATGGATTCGTAAGTGATGCAATAGTTAGCGGTATTGATTGATTCATTGATCTCTGTTTTGTTTCTTTGATTATTTAATGATTTATACGGATTTGGGATTTTTAATTAGGTTACATTCAAAGACGCGGAATCCGCGAAGAAAGCTTGTGAGGATTCGGCTCCGATCATCAATGGCCGTCGAGCTAACTGTAATCTCGCTTCACTTGGAGCTCGGCGCGGCGGTTCTAGGTCGGCTTCCGCTACTCCTCCTCAAGCTCCTCAACCAGGTTAATAAAAAAAAAACAACAAAAAAAACTTTCGAGTTCTTCCGATCATCAATGACATTTTTGATTATTTTTTGTTGAGTGGAGATCTGAACTTGGTTTGTGATATTTTGAAGGATCCAACGCTGGAGGACCGAGAACGACATCAGCAGCAACCGCACCGGGAAATCATGTGCAGTGGTATTACCCGGCGGGGACTCATCCAACGCCGTTTCATCATCAGCCTCATCAACCCGTCCCTTTTTATGGGTATACCTTAAGATCCCATGTTCTCTTCCGTATTTAATTTTCCCTCATTTATTTAAATCAAATTAAATGTAAGCTTCATTTTCTTTTAGATATTCCCCAAGCCCCACATACATCGCAACCGATATCAGTTACAACCACGTAAGCCACCACCCCCTTTATTCCTTTTATTTTTATCTTAGGTTAATTAAATTAATAAGACGTAAGTTAGTTAAACGGCGACGTTTTTTCTTTGTAAATGGAACAGAAATTGGGGTATATGAACGGGCACTACACACAAATGTATCCAGGGCAGGCTATGGTAGGAGCGAACACATTGATGCCAATGTACCCGCTGTATCATTACCATCAATCACACGCCATGGGGATGCCGGCCCACATCTTCCCTCCTAGTCCCACGACGGCGGGCCCATTTGCCGCTGTCCCACCCACTTCCATTATGTCCAAACCAACTACCGTTGGTCCCAACCCAGGTCCGTTTTTACTTAACCCTTCTCCATTATCTTAATTCAAGTTTGTAGACTATTGTGTTATTTTGACGACGGTTGGCGTTTGTTTGCACATTGTTTTTGGTTACTGCATGTGGTAAAAACGAAAACAAAAACAACAAAAAAAACTCGAAAAATGGTCAATAGTCAAACGTTATTAACAAGAAGAAGAGAAAGAAAGAACGAAAGAAAAAAAAAAGATGAGGCCGGGAGGGAGGCAAAAAACAACAGATCAGAGTGTGGTCGTTGTTCACGTGAAAGGGTGATTTAGTAAAAGCGTCTTCTCCGTCAGTGCCAACTGGCGTGGCTGGGTCCCACGTGGCCAGCTTGATTCGCCGGTCGTGCGTTGGTCTAGCTGTCCCTACTCCAATTCCTCTTAATAATCCTTAACTTGAAGGACTCTTTTGCAATATCAACTACTTTTCTAGACCATTTTTTTCAAAAACTAAACCACCCATAGTAATATTGGTGCGTACAACTGTTTAGATGATGAAGTGAAGTGTTTGTAAATTTTGTATACAAGAGCCTTTATATTTCTTGTTGATCAGCATATTATTGGTTGTATTATCAGTTTTTGTTTTAAATGAAGTGTATAATTGTGGAGTAAGAAATAATGTTGATCATTAAACTGATATTACAAAGAAACAGTTTGCTTGGTTGTGGAATAAATAGGTACAGTTGGAGGCAGGGGATGAAGAAGATGCTGATGATGCATGGTAAAAGAAGAGCAGATAGAAGAATTTTAAGTATAAAAATGGGGAGAGGGCAGGCTAAGAGGGACTATTTTTTTTAATTTATTTTTTTCTTTTTTAAATTTTTAATCAGAACATCTCATTCTCTTAGTACATGGCAGGCAAGAAAGAAAGAAGAACAAAAAAAAAAAGAAAAGAAAAATAACAGAGACAATGTGAAGCTGGTTGGGGGGGCTGCTCAGAACTACATTATTTTTAGGCTGATCTGTTGTAGCTCTTTATTTATTTCTTTCTTCTTTTAATTATAAAAAACTAATTTTATTGTTTTTTTCCCTCTCCATTCTTCTCTCCTTCCCTATCATTTCCACAAACCAACACCTCTCTATATTACTTTCTATCTCGGTACTTTCGACCACCCTAAAAATGTTCATTTTCAGCCATAATGGCATTTATATGTGCAAAACACTGCTTGTGGTT

Coding sequence (CDS)

ATGACGATGATGACCACCACCACCACCAACAACAACAGTAGTACCAATGCAGGTTTGTTCGGCGATACCACTTTGACGAAAGTCTTCGTTGGTGGGTTAGCTTGGGAAACACCAAAGGAAGCCATGAGAGATCACTTCCACAAGTTCGGTGAAATTCTCGAAGCGGTTATCATCTCTGATAAACTCACCGGCAGATCCAAGGGATATGGATTCGTTACATTCAAAGACGCGGAATCCGCGAAGAAAGCTTGTGAGGATTCGGCTCCGATCATCAATGGCCGTCGAGCTAACTGTAATCTCGCTTCACTTGGAGCTCGGCGCGGCGGTTCTAGGTCGGCTTCCGCTACTCCTCCTCAAGCTCCTCAACCAGGATCCAACGCTGGAGGACCGAGAACGACATCAGCAGCAACCGCACCGGGAAATCATGTGCAGTGGTATTACCCGGCGGGGACTCATCCAACGCCGTTTCATCATCAGCCTCATCAACCCGTCCCTTTTTATGGGTATACCTTAAGATCCCATGTTCTCTTCCGTATTTAA

Protein sequence

MTMMTTTTTNNNSSTNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFHKFGEILEAVIISDKLTGRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQAPQPGSNAGGPRTTSAATAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYTLRSHVLFRI

Homology

[Close]

BLAST of Cucsat.G15086 vs. ExPASy Swiss-Prot
Match: Q9M1S3 (Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana OX=3702 GN=ARP1 PE=2 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 1.1e-56
Identity = 140/267 (52.43%), Postives = 170/267 (63.67%), Query Frame = 0


Query: 8   TTNNNSSTNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFHKFGEILEAVIISDKLTGRSK 67
           TT+NN +   G FGDT LTKVFVGGLAW+T KEAM DHF K+G+ILEAVIISDKLT RSK
Sbjct: 2   TTSNNVN---GCFGDTKLTKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSK 61

Query: 68  GYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQAPQPGSNA 127
           GYGFVTFKDA++A +ACEDS PIINGRRANCNLASLG R    +S + T PQ        
Sbjct: 62  GYGFVTFKDAKAATRACEDSTPIINGRRANCNLASLGGRL--RKSPTMTSPQQ------- 121

Query: 128 GGPRTTSAATAP--GNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDISYNHK 187
            GP+  + AT P  GNH QWYYP+G        Q HQ VPFYGY PS  Y+A ++++N K
Sbjct: 122 -GPKNGNRATPPHVGNHSQWYYPSGFTNQQHQQQNHQAVPFYGY-PS-AYVAPNMTFNQK 181

Query: 188 LG-----YMNGHYTQMYP------------------GQAMVG-ANTLMPMYPLYHYHQSH 247
           +G     YMNG+Y QM P                  G+ MVG A+ ++P Y +Y YHQS 
Sbjct: 182 VGYVGGTYMNGYYAQMQPQPQSQPQPQYYHHHMYGGGRVMVGAASPMVPFYTVYPYHQSQ 241

[Close]

BLAST of Cucsat.G15086 vs. ExPASy Swiss-Prot
Match: Q5ZJX4 (RNA-binding protein 38 OS=Gallus gallus OX=9031 GN=RBM38 PE=2 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.2e-21
Identity = 48/85 (56.47%), Postives = 66/85 (77.65%), Query Frame = 0


Query: 22  DTTLTKVFVGGLAWETPKEAMRDHFHKFGEILEAVIISDKLTGRSKGYGFVTFKDAESAK 81
           DTT TK+FVGGL + T   ++R +F  FG+I EAV+I+D+ TG+S+GYGFVT  D  +A+
Sbjct: 7   DTTFTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 82  KACEDSAPIINGRRANCNLASLGAR 107
           +AC+D  PII+GR+AN NLA LGA+
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLGAK 91

[Close]

BLAST of Cucsat.G15086 vs. ExPASy Swiss-Prot
Match: Q6GQD3 (RNA-binding protein 24-A OS=Xenopus laevis OX=8355 GN=rbm24-a PE=2 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 4.5e-21
Identity = 52/103 (50.49%), Postives = 71/103 (68.93%), Query Frame = 0


Query: 22  DTTLTKVFVGGLAWETPKEAMRDHFHKFGEILEAVIISDKLTGRSKGYGFVTFKDAESAK 81
           DTT TK+FVGGL + T   ++R +F  FG+I EAV+I+D+ TG+S+GYGFVT  D  +A+
Sbjct: 7   DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 82  KACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQAPQPG 125
           +AC+D  PII+GR+AN NLA LGA+           P+  QPG
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLGAK-----------PRIMQPG 98

[Close]

BLAST of Cucsat.G15086 vs. ExPASy Swiss-Prot
Match: Q9I8B3 (RNA-binding protein 24-B OS=Xenopus laevis OX=8355 GN=rbm24-b PE=2 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 4.5e-21
Identity = 52/103 (50.49%), Postives = 71/103 (68.93%), Query Frame = 0


Query: 22  DTTLTKVFVGGLAWETPKEAMRDHFHKFGEILEAVIISDKLTGRSKGYGFVTFKDAESAK 81
           DTT TK+FVGGL + T   ++R +F  FG+I EAV+I+D+ TG+S+GYGFVT  D  +A+
Sbjct: 7   DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 82  KACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQAPQPG 125
           +AC+D  PII+GR+AN NLA LGA+           P+  QPG
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLGAK-----------PRIMQPG 98

[Close]

BLAST of Cucsat.G15086 vs. ExPASy Swiss-Prot
Match: Q5ZMA3 (RNA-binding protein 24 OS=Gallus gallus OX=9031 GN=RBM24 PE=1 SV=2)

HSP 1 Score: 103.2 bits (256), Expect = 4.5e-21
Identity = 52/103 (50.49%), Postives = 71/103 (68.93%), Query Frame = 0


Query: 22  DTTLTKVFVGGLAWETPKEAMRDHFHKFGEILEAVIISDKLTGRSKGYGFVTFKDAESAK 81
           DTT TK+FVGGL + T   ++R +F  FG+I EAV+I+D+ TG+S+GYGFVT  D  +A+
Sbjct: 7   DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 82  KACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQAPQPG 125
           +AC+D  PII+GR+AN NLA LGA+           P+  QPG
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLGAK-----------PRIMQPG 98

[Close]

BLAST of Cucsat.G15086 vs. NCBI nr
Match: XP_011654915.1 (probable RNA-binding protein ARP1 isoform X2 [Cucumis sativus] >KAE8647967.1 hypothetical protein Csa_000221 [Cucumis sativus])

HSP 1 Score: 523 bits (1347), Expect = 4.09e-187
Identity = 259/260 (99.62%), Postives = 259/260 (99.62%), Query Frame = 0


Query: 1   MTMMTTTTTNNNSSTNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFHKFGEILEAVIISD 60
           MTMMTTTT NNNSSTNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFHKFGEILEAVIISD
Sbjct: 1   MTMMTTTTNNNNSSTNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFHKFGEILEAVIISD 60

Query: 61  KLTGRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQA 120
           KLTGRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQA
Sbjct: 61  KLTGRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQA 120

Query: 121 PQPGSNAGGPRTTSAATAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDI 180
           PQPGSNAGGPRTTSAATAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDI
Sbjct: 121 PQPGSNAGGPRTTSAATAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDI 180

Query: 181 SYNHKLGYMNGHYTQMYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGPF 240
           SYNHKLGYMNGHYTQMYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGPF
Sbjct: 181 SYNHKLGYMNGHYTQMYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGPF 240

Query: 241 AAVPPTSIMSKPTTVGPNPV 260
           AAVPPTSIMSKPTTVGPNPV
Sbjct: 241 AAVPPTSIMSKPTTVGPNPV 260

[Close]

BLAST of Cucsat.G15086 vs. NCBI nr
Match: XP_004143608.1 (probable RNA-binding protein ARP1 isoform X1 [Cucumis sativus])

HSP 1 Score: 521 bits (1343), Expect = 1.73e-186
Identity = 258/259 (99.61%), Postives = 258/259 (99.61%), Query Frame = 0


Query: 1   MTMMTTTTTNNNSSTNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFHKFGEILEAVIISD 60
           MTMMTTTT NNNSSTNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFHKFGEILEAVIISD
Sbjct: 1   MTMMTTTTNNNNSSTNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFHKFGEILEAVIISD 60

Query: 61  KLTGRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQA 120
           KLTGRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQA
Sbjct: 61  KLTGRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQA 120

Query: 121 PQPGSNAGGPRTTSAATAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDI 180
           PQPGSNAGGPRTTSAATAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDI
Sbjct: 121 PQPGSNAGGPRTTSAATAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDI 180

Query: 181 SYNHKLGYMNGHYTQMYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGPF 240
           SYNHKLGYMNGHYTQMYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGPF
Sbjct: 181 SYNHKLGYMNGHYTQMYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGPF 240

Query: 241 AAVPPTSIMSKPTTVGPNP 259
           AAVPPTSIMSKPTTVGPNP
Sbjct: 241 AAVPPTSIMSKPTTVGPNP 259

[Close]

BLAST of Cucsat.G15086 vs. NCBI nr
Match: XP_008445853.2 (PREDICTED: probable RNA-binding protein ARP1 isoform X2 [Cucumis melo])

HSP 1 Score: 501 bits (1291), Expect = 1.31e-178
Identity = 252/261 (96.55%), Postives = 255/261 (97.70%), Query Frame = 0


Query: 1   MTMMTTTTTNNNSSTNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFHKFGEILEAVIISD 60
           MTMMTTTT   NS+TNAGLFGDTTLTKVFVGGLAWETPKEAMRDHF KFGEILEAVIISD
Sbjct: 1   MTMMTTTT---NSNTNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFQKFGEILEAVIISD 60

Query: 61  KLTGRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQA 120
           KLTGRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQA
Sbjct: 61  KLTGRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQA 120

Query: 121 PQPGSNAGGPRTTSAATAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDI 180
           PQPGSN GGPRTT+AATAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDI
Sbjct: 121 PQPGSNGGGPRTTTAATAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDI 180

Query: 181 SYNHKLGYMNGHYTQMYPGQA-MVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGP 240
           SYNHKLGY+NGHYTQMYPGQA MVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGP
Sbjct: 181 SYNHKLGYVNGHYTQMYPGQAAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGP 240

Query: 241 FAAVPPTSIMSKPTTVGPNPV 260
           FAAVPPTSIMSKPTTVGPNPV
Sbjct: 241 FAAVPPTSIMSKPTTVGPNPV 258

[Close]

BLAST of Cucsat.G15086 vs. NCBI nr
Match: XP_008445852.2 (PREDICTED: probable RNA-binding protein ARP1 isoform X1 [Cucumis melo])

HSP 1 Score: 500 bits (1287), Expect = 5.53e-178
Identity = 251/260 (96.54%), Postives = 254/260 (97.69%), Query Frame = 0


Query: 1   MTMMTTTTTNNNSSTNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFHKFGEILEAVIISD 60
           MTMMTTTT   NS+TNAGLFGDTTLTKVFVGGLAWETPKEAMRDHF KFGEILEAVIISD
Sbjct: 1   MTMMTTTT---NSNTNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFQKFGEILEAVIISD 60

Query: 61  KLTGRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQA 120
           KLTGRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQA
Sbjct: 61  KLTGRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQA 120

Query: 121 PQPGSNAGGPRTTSAATAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDI 180
           PQPGSN GGPRTT+AATAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDI
Sbjct: 121 PQPGSNGGGPRTTTAATAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDI 180

Query: 181 SYNHKLGYMNGHYTQMYPGQA-MVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGP 240
           SYNHKLGY+NGHYTQMYPGQA MVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGP
Sbjct: 181 SYNHKLGYVNGHYTQMYPGQAAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGP 240

Query: 241 FAAVPPTSIMSKPTTVGPNP 259
           FAAVPPTSIMSKPTTVGPNP
Sbjct: 241 FAAVPPTSIMSKPTTVGPNP 257

[Close]

BLAST of Cucsat.G15086 vs. NCBI nr
Match: KAA0034049.1 (putative RNA-binding protein ARP1 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 498 bits (1283), Expect = 2.09e-177
Identity = 250/260 (96.15%), Postives = 253/260 (97.31%), Query Frame = 0


Query: 1   MTMMTTTTTNNNSSTNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFHKFGEILEAVIISD 60
           MTMMTTTT   NS+TNAGLFGDTTLTKVFVGGLAWETPKEAMRDHF KFGEILEAVIISD
Sbjct: 1   MTMMTTTT---NSNTNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFQKFGEILEAVIISD 60

Query: 61  KLTGRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQA 120
           KLTGRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQA
Sbjct: 61  KLTGRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQA 120

Query: 121 PQPGSNAGGPRTTSAATAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDI 180
           PQPGSN GGPRTT+AATAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDI
Sbjct: 121 PQPGSNGGGPRTTTAATAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDI 180

Query: 181 SYNHKLGYMNGHYTQMYPGQA-MVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGP 240
           SYNHKLGY+NGHYTQMYPGQA MVG NTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGP
Sbjct: 181 SYNHKLGYVNGHYTQMYPGQAAMVGVNTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGP 240

Query: 241 FAAVPPTSIMSKPTTVGPNP 259
           FAAVPPTSIMSKPTTVGPNP
Sbjct: 241 FAAVPPTSIMSKPTTVGPNP 257

[Close]

BLAST of Cucsat.G15086 vs. ExPASy TrEMBL
Match: A0A0A0KNL6 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G175910 PE=4 SV=1)

HSP 1 Score: 521 bits (1343), Expect = 8.37e-187
Identity = 258/259 (99.61%), Postives = 258/259 (99.61%), Query Frame = 0


Query: 1   MTMMTTTTTNNNSSTNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFHKFGEILEAVIISD 60
           MTMMTTTT NNNSSTNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFHKFGEILEAVIISD
Sbjct: 1   MTMMTTTTNNNNSSTNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFHKFGEILEAVIISD 60

Query: 61  KLTGRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQA 120
           KLTGRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQA
Sbjct: 61  KLTGRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQA 120

Query: 121 PQPGSNAGGPRTTSAATAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDI 180
           PQPGSNAGGPRTTSAATAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDI
Sbjct: 121 PQPGSNAGGPRTTSAATAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDI 180

Query: 181 SYNHKLGYMNGHYTQMYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGPF 240
           SYNHKLGYMNGHYTQMYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGPF
Sbjct: 181 SYNHKLGYMNGHYTQMYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGPF 240

Query: 241 AAVPPTSIMSKPTTVGPNP 259
           AAVPPTSIMSKPTTVGPNP
Sbjct: 241 AAVPPTSIMSKPTTVGPNP 259

[Close]

BLAST of Cucsat.G15086 vs. ExPASy TrEMBL
Match: A0A1S3BD62 (probable RNA-binding protein ARP1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103488745 PE=4 SV=1)

HSP 1 Score: 501 bits (1291), Expect = 6.34e-179
Identity = 252/261 (96.55%), Postives = 255/261 (97.70%), Query Frame = 0


Query: 1   MTMMTTTTTNNNSSTNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFHKFGEILEAVIISD 60
           MTMMTTTT   NS+TNAGLFGDTTLTKVFVGGLAWETPKEAMRDHF KFGEILEAVIISD
Sbjct: 1   MTMMTTTT---NSNTNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFQKFGEILEAVIISD 60

Query: 61  KLTGRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQA 120
           KLTGRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQA
Sbjct: 61  KLTGRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQA 120

Query: 121 PQPGSNAGGPRTTSAATAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDI 180
           PQPGSN GGPRTT+AATAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDI
Sbjct: 121 PQPGSNGGGPRTTTAATAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDI 180

Query: 181 SYNHKLGYMNGHYTQMYPGQA-MVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGP 240
           SYNHKLGY+NGHYTQMYPGQA MVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGP
Sbjct: 181 SYNHKLGYVNGHYTQMYPGQAAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGP 240

Query: 241 FAAVPPTSIMSKPTTVGPNPV 260
           FAAVPPTSIMSKPTTVGPNPV
Sbjct: 241 FAAVPPTSIMSKPTTVGPNPV 258

[Close]

BLAST of Cucsat.G15086 vs. ExPASy TrEMBL
Match: A0A1S3BEI0 (probable RNA-binding protein ARP1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103488745 PE=4 SV=1)

HSP 1 Score: 500 bits (1287), Expect = 2.68e-178
Identity = 251/260 (96.54%), Postives = 254/260 (97.69%), Query Frame = 0


Query: 1   MTMMTTTTTNNNSSTNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFHKFGEILEAVIISD 60
           MTMMTTTT   NS+TNAGLFGDTTLTKVFVGGLAWETPKEAMRDHF KFGEILEAVIISD
Sbjct: 1   MTMMTTTT---NSNTNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFQKFGEILEAVIISD 60

Query: 61  KLTGRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQA 120
           KLTGRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQA
Sbjct: 61  KLTGRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQA 120

Query: 121 PQPGSNAGGPRTTSAATAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDI 180
           PQPGSN GGPRTT+AATAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDI
Sbjct: 121 PQPGSNGGGPRTTTAATAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDI 180

Query: 181 SYNHKLGYMNGHYTQMYPGQA-MVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGP 240
           SYNHKLGY+NGHYTQMYPGQA MVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGP
Sbjct: 181 SYNHKLGYVNGHYTQMYPGQAAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGP 240

Query: 241 FAAVPPTSIMSKPTTVGPNP 259
           FAAVPPTSIMSKPTTVGPNP
Sbjct: 241 FAAVPPTSIMSKPTTVGPNP 257

[Close]

BLAST of Cucsat.G15086 vs. ExPASy TrEMBL
Match: A0A5A7SY01 (Putative RNA-binding protein ARP1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold65G00350 PE=4 SV=1)

HSP 1 Score: 498 bits (1283), Expect = 1.01e-177
Identity = 250/260 (96.15%), Postives = 253/260 (97.31%), Query Frame = 0


Query: 1   MTMMTTTTTNNNSSTNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFHKFGEILEAVIISD 60
           MTMMTTTT   NS+TNAGLFGDTTLTKVFVGGLAWETPKEAMRDHF KFGEILEAVIISD
Sbjct: 1   MTMMTTTT---NSNTNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFQKFGEILEAVIISD 60

Query: 61  KLTGRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQA 120
           KLTGRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQA
Sbjct: 61  KLTGRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQA 120

Query: 121 PQPGSNAGGPRTTSAATAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDI 180
           PQPGSN GGPRTT+AATAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDI
Sbjct: 121 PQPGSNGGGPRTTTAATAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDI 180

Query: 181 SYNHKLGYMNGHYTQMYPGQA-MVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGP 240
           SYNHKLGY+NGHYTQMYPGQA MVG NTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGP
Sbjct: 181 SYNHKLGYVNGHYTQMYPGQAAMVGVNTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGP 240

Query: 241 FAAVPPTSIMSKPTTVGPNP 259
           FAAVPPTSIMSKPTTVGPNP
Sbjct: 241 FAAVPPTSIMSKPTTVGPNP 257

[Close]

BLAST of Cucsat.G15086 vs. ExPASy TrEMBL
Match: A0A6J1CCJ5 (probable RNA-binding protein ARP1 OS=Momordica charantia OX=3673 GN=LOC111010248 PE=4 SV=1)

HSP 1 Score: 436 bits (1122), Expect = 3.12e-153
Identity = 221/253 (87.35%), Postives = 233/253 (92.09%), Query Frame = 0


Query: 12  NSSTNAGL-FGDTTLTKVFVGGLAWETPKEAMRDHFHKFGEILEAVIISDKLTGRSKGYG 71
           N+S NAGL FGDTTLTKVFVGGLAWETPKEAMRDHF KFGEILEAVIISDKLTGRSKGYG
Sbjct: 3   NNSNNAGLMFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKLTGRSKGYG 62

Query: 72  FVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQAPQ-PGSNAGG 131
           FVTFKDAESAKKACED+APIINGRRANCNLASLGARRG   +++ATPPQAP  PGSN GG
Sbjct: 63  FVTFKDAESAKKACEDAAPIINGRRANCNLASLGARRGSRSASAATPPQAPPLPGSNGGG 122

Query: 132 PRTTSAATAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDISYNHKLGYM 191
              +++A +P NHVQWYYPAGT PTPFHHQPHQPVPFYGYSPSPTYIATDISYNHKL YM
Sbjct: 123 GARSTSAASP-NHVQWYYPAGTPPTPFHHQPHQPVPFYGYSPSPTYIATDISYNHKLSYM 182

Query: 192 NG--HYTQMYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGPFAAVPPTS 251
           NG  HY+Q+YPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPT AGPFAAVPPTS
Sbjct: 183 NGGGHYSQVYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTAAGPFAAVPPTS 242

Query: 252 IMSKPTTVGPNPV 260
           IMSKP +VGPNPV
Sbjct: 243 IMSKPASVGPNPV 254

The following BLAST results are available for this feature:

BLAST of Cucsat.G15086 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M1S3	1.1e-56	52.43	Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana OX=3702 GN=ARP1 PE=2 S...	[more]
Q5ZJX4	1.2e-21	56.47	RNA-binding protein 38 OS=Gallus gallus OX=9031 GN=RBM38 PE=2 SV=1	[more]
Q6GQD3	4.5e-21	50.49	RNA-binding protein 24-A OS=Xenopus laevis OX=8355 GN=rbm24-a PE=2 SV=1	[more]
Q9I8B3	4.5e-21	50.49	RNA-binding protein 24-B OS=Xenopus laevis OX=8355 GN=rbm24-b PE=2 SV=1	[more]
Q5ZMA3	4.5e-21	50.49	RNA-binding protein 24 OS=Gallus gallus OX=9031 GN=RBM24 PE=1 SV=2	[more]

BLAST of Cucsat.G15086 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011654915.1	4.09e-187	99.62	probable RNA-binding protein ARP1 isoform X2 [Cucumis sativus] >KAE8647967.1 hyp...	[more]
XP_004143608.1	1.73e-186	99.61	probable RNA-binding protein ARP1 isoform X1 [Cucumis sativus]	[more]
XP_008445853.2	1.31e-178	96.55	PREDICTED: probable RNA-binding protein ARP1 isoform X2 [Cucumis melo]	[more]
XP_008445852.2	5.53e-178	96.54	PREDICTED: probable RNA-binding protein ARP1 isoform X1 [Cucumis melo]	[more]
KAA0034049.1	2.09e-177	96.15	putative RNA-binding protein ARP1 isoform X1 [Cucumis melo var. makuwa]	[more]

BLAST of Cucsat.G15086 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KNL6	8.37e-187	99.61	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G175910 PE=4 SV...	[more]
A0A1S3BD62	6.34e-179	96.55	probable RNA-binding protein ARP1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10348...	[more]
A0A1S3BEI0	2.68e-178	96.54	probable RNA-binding protein ARP1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10348...	[more]
A0A5A7SY01	1.01e-177	96.15	Putative RNA-binding protein ARP1 isoform X1 OS=Cucumis melo var. makuwa OX=1194...	[more]
A0A6J1CCJ5	3.12e-153	87.35	probable RNA-binding protein ARP1 OS=Momordica charantia OX=3673 GN=LOC111010248...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 27..99 e-value: 3.0E-22 score: 89.9
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 28..85 e-value: 2.8E-17 score: 62.3
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 26..103 score: 17.097071
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 4..116 e-value: 3.9E-24 score: 87.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 112..135
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 104..135
None	No IPR available	PANTHER	PTHR48024	GEO13361P1-RELATED	coord: 13..258
None	No IPR available	PANTHER	PTHR48024:SF23	RNA-BINDING PROTEIN ARP1-RELATED	coord: 13..258
None	No IPR available	CDD	cd12384	RRM_RBM24_RBM38_like	coord: 26..101 e-value: 9.45231E-42 score: 135.821
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 25..113

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsat.G15086.T7	Cucsat.G15086.T7	mRNA
Cucsat.G15086.T2	Cucsat.G15086.T2	mRNA
Cucsat.G15086.T3	Cucsat.G15086.T3	mRNA
Cucsat.G15086.T1	Cucsat.G15086.T1	mRNA
Cucsat.G15086.T4	Cucsat.G15086.T4	mRNA
Cucsat.G15086.T5	Cucsat.G15086.T5	mRNA
Cucsat.G15086.T6	Cucsat.G15086.T6	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding