Cucsat.G14670 (gene) Cucumber (B10) v3

Overview


Name	Cucsat.G14670
Type	gene
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	Ribonucloprotein
Location	ctg1869: 3195284 .. 3196290 (+)
RNA-Seq Expression	Cucsat.G14670
Synteny	Cucsat.G14670

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTGGGCTAAAACGGGGGAGCTTGTTTCGCCTCCATCCTCACCTTAAACCCTAGTAATAAAGAAGAGACGAAGCCAAAAACCCAAGCAGGCACCAGTCTCCGTCGTCGTCAAAATCCCATTTTTCTCCGATAGTTCCATCTTCAATCCTCTTACGGAGGCAATGGGAAGTGATAGCGAGGCAGAGAAGTCGCGTCTAAAGGACAAAGAAAAGGAGAAGAAGCTCTTGGCTCTTGCTCCAATTGCCAAACCCCTTGCGGGCAAAAAGCTCTGCAAGCGTACCCTCAAGCTTGTTCGCAAAGGTGTGCCATCTCGTTTACATTTTTTTTTTTTTTTTTTTTTTGAGTTTTGAAGATGTTTTTGATTGTATAGAGGAGGTTTGTGTTGGAATTAGTACGATTGCTTTCGTTGAACTCAAACAATGGATGAAACTAGTTGAATCTGGAAGCTATTTTTGTTCTTGATAGATTTGATTTCTGTATTAGATATGAAAAACATTTCGTCTTAAAACATTCGTCTCTGTTCTTTCAGCTGCTGAGTATAAGTGCTTGAAGCGGGGTGTAAAGGAGGTTGTCAAAAGCATAAGGCGCGGCCAAAAAGGGTAACTTCGGCTATGAATTTTATCCTATTTTTTCGCTTACATCGATTAATATGATGCTAAAGATAGAATAATGGTGAAGGAATTAGGAATTAGGAATCATGGAATATTAATATAATTTCAATAGACTTTATATTCATTTTCATTATTTTGGGATGGATTGAAATCAAAACAAGCCTTTGGGACATCTATACATATAATGTGACGCACGAAATTCCTTCTACTCTATGTTATTTTGAATTTCTTTCCTCTTTCCTCTTCCCCCTTCATCTTTTGCCCTCTGCAATGCAGATTGTGTGTAATAGCTGGAAACATTTCCCCCATTGACGTGATCACTCATGTTCCAATCTTATGTGAAGAATCAGAAATTCGTTACGTATATGTTCCCTCCAAGGAAGTAAGTGATGGCTAACGTTTCAATCTTTTCAGGAATGCTTTGATTCTTTGTTTATTTGTTGTGGTGTTTTATCTGAATAAGTTGAGAAATGAGATAAGTAATGGGTGCATGTTTGTTCTTTATCCACTCTAAACTACTTGAGTTTGACATTGGTTCAATGTAGAGCATAATTAAATGTAGGAGGTTGCAACGCTTAACATCAAGTTCCCAAGTATCCTCATGCTTTGCCATGATTCTTCATTCTTGTGAAAATAATCTGACTGGTGTTAATCGTGTTTGTTATCTAGGATCTTGCCAATGCTGGGTCGACGAAGAGGCCAACATGTTGTGTGCTGGTACAAACAAAGCCAAACAAAGGGGAGCTTGGATCAACTGAACAAGAGAAACTCAAAGCTGACTTTGACCAAGTTGTAGCCGAAGTATCAGAACTTACTAGCACTCTTTTTTGAATAGTAAAGTTGTTTCTTTATCTTCTCTCAATGTACTTGTAGCATTTCTCTTCAAACTGGTTAGTGTACTCTGTTTTACCCTCAAATTTGTTTGGTCTTATTCCATTTCAACTCAATCATCTCTCCCAATATTAATATATATATATATATATATATAACTTATTCCAAATCATCTTGTGGAGAAGCAATCGACAGTATCCGGTGTGTACGGATCTTGTATTTCCATTGAGTTCCATTTTGGAGCTTTCGTGTAAAACTCGTCTACTATTTTTTTTTTTTTTCGTCTTCAGATTTTAATCTGTTCATCAAACTTCTGAATTTCTAGTAAGCCTATTGTTTGTAGAAGATGTCGAATATCTCCAAAATGATACCTTGGGACTAATCCCAATAATAATTATTTACAAACTATTGCTTTTTTGAGATATCATAGGTGGAAATGAAGGTAATTTTAAAGTTTG

Coding sequence (CDS)

ATGGGAAGTGATAGCGAGGCAGAGAAGTCGCGTCTAAAGGACAAAGAAAAGGAGAAGAAGCTCTTGGCTCTTGCTCCAATTGCCAAACCCCTTGCGGGCAAAAAGCTCTGCAAGCGTACCCTCAAGCTTGTTCGCAAAGCTGCTGAGTATAAGTGCTTGAAGCGGGGTGTAAAGGAGGTTGTCAAAAGCATAAGGCGCGGCCAAAAAGGATTGTGTGTAATAGCTGGAAACATTTCCCCCATTGACGTGATCACTCATGTTCCAATCTTATGTGAAGAATCAGAAATTCGTTACGTATATGTTCCCTCCAAGGAAGATCTTGCCAATGCTGGGTCGACGAAGAGGCCAACATGTTGTGTGCTGGTACAAACAAAGCCAAACAAAGGGGAGCTTGGATCAACTGAACAAGAGAAACTCAAAGCTGACTTTGACCAAGTTGTAGCCGAAGTATCAGAACTTACTAGCACTCTTTTTTGA

Protein sequence

MGSDSEAEKSRLKDKEKEKKLLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKEVVKSIRRGQKGLCVIAGNISPIDVITHVPILCEESEIRYVYVPSKEDLANAGSTKRPTCCVLVQTKPNKGELGSTEQEKLKADFDQVVAEVSELTSTLF

Homology

[Close]

BLAST of Cucsat.G14670 vs. ExPASy Swiss-Prot
Match: Q9LEY9 (H/ACA ribonucleoprotein complex subunit 2-like protein OS=Arabidopsis thaliana OX=3702 GN=At5g08180 PE=1 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 1.6e-36
Identity = 84/105 (80.00%), Postives = 92/105 (87.62%), Query Frame = 0


Query: 1   MGSDSEAEKSRLKDKEKEKKLLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKEV 60
           MGSD+EAEKS    KEK+K  + LAPIAKPLAGKKL KRT KL++KAA  KCLKRGVKEV
Sbjct: 1   MGSDTEAEKS--IQKEKKKYAITLAPIAKPLAGKKLQKRTFKLIQKAAGKKCLKRGVKEV 60

Query: 61  VKSIRRGQKGLCVIAGNISPIDVITHVPILCEESEIRYVYVPSKE 106
           VKSIRRGQKGLCVIAGNISPIDVITH+PILCEE+ + YVYVPSKE
Sbjct: 61  VKSIRRGQKGLCVIAGNISPIDVITHLPILCEEAGVPYVYVPSKE 103

[Close]

BLAST of Cucsat.G14670 vs. ExPASy Swiss-Prot
Match: P32495 (H/ACA ribonucleoprotein complex subunit NHP2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=NHP2 PE=1 SV=2)

HSP 1 Score: 108.6 bits (270), Expect = 4.5e-23
Identity = 56/108 (51.85%), Postives = 81/108 (75.00%), Query Frame = 0


Query: 1   MGSDSEAEKSRLKDK---EKEKKLLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGV 60
           MG D++  K   + K     E ++ A+ P AKPLA KKL K+ LK V+KA++ K +KRGV
Sbjct: 1   MGKDNKEHKESKESKTVDNYEARMPAVLPFAKPLASKKLNKKVLKTVKKASKAKNVKRGV 60

Query: 61  KEVVKSIRRGQKGLCVIAGNISPIDVITHVPILCEESEIRYVYVPSKE 106
           KEVVK++R+G+KGL VIAG+ISP DVI+H+P+LCE+  + Y+++PSK+
Sbjct: 61  KEVVKALRKGEKGLVVIAGDISPADVISHIPVLCEDHSVPYIFIPSKQ 108

[Close]

BLAST of Cucsat.G14670 vs. ExPASy Swiss-Prot
Match: Q9P7H0 (H/ACA ribonucleoprotein complex subunit nhp2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=nhp2 PE=1 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 2.5e-21
Identity = 55/107 (51.40%), Postives = 80/107 (74.77%), Query Frame = 0


Query: 1   MGSDSEAEK-SRLKDKEKEKKLLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE 60
           M  D +  K S   + E +  L AL PIAKPLA KKL K+ +K V+KA++ K + RGVKE
Sbjct: 1   MAKDKKDHKHSGSTEDEYDSYLPALMPIAKPLAPKKLNKKMMKTVKKASKQKHILRGVKE 60

Query: 61  VVKSIRRGQKGLCVIAGNISPIDVITHVPILCEESEIRYVYVPSKEV 107
           VVK++R+G+KGL ++AG+ISP+DVI+H+P+LCE++ + Y+Y  SKE+
Sbjct: 61  VVKAVRKGEKGLVILAGDISPMDVISHIPVLCEDNNVPYLYTVSKEL 107

[Close]

BLAST of Cucsat.G14670 vs. ExPASy Swiss-Prot
Match: Q60YI3 (Putative H/ACA ribonucleoprotein complex subunit 2-like protein OS=Caenorhabditis briggsae OX=6238 GN=CBG18231 PE=3 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 6.1e-20
Identity = 48/94 (51.06%), Postives = 72/94 (76.60%), Query Frame = 0


Query: 14  DKEKEKKLLALA-PIAKPLAGKKLCKRTLKLVRKAAE-YKCLKRGVKEVVKSIRRGQKGL 73
           +K++ + L  L  PIA+PLA +KL K+  KL++KAA   K L+ G+K+V K +R+ +KG+
Sbjct: 28  EKDEYQALCELVNPIAQPLANRKLAKKVYKLIKKAAAGEKTLREGIKDVQKELRKNEKGI 87

Query: 74  CVIAGNISPIDVITHVPILCEESEIRYVYVPSKE 106
           C++AGN+SPIDV +H+P +CEE EI YVY+PS+E
Sbjct: 88  CILAGNVSPIDVYSHIPAICEEKEIPYVYIPSRE 121

[Close]

BLAST of Cucsat.G14670 vs. ExPASy Swiss-Prot
Match: Q9XXD4 (Putative H/ACA ribonucleoprotein complex subunit 2-like protein OS=Caenorhabditis elegans OX=6239 GN=Y48A6B.3 PE=3 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 1.0e-19
Identity = 49/94 (52.13%), Postives = 72/94 (76.60%), Query Frame = 0


Query: 14  DKEKEKKLLALA-PIAKPLAGKKLCKRTLKLVRKA-AEYKCLKRGVKEVVKSIRRGQKGL 73
           +K++ + L  L  PIA+PLA +KL K+  KL++KA A  K L+ G+K+V K +RR +KG+
Sbjct: 28  EKDEYQALCELVNPIAQPLANRKLAKKVYKLIKKASAGDKTLREGIKDVQKELRRNEKGI 87

Query: 74  CVIAGNISPIDVITHVPILCEESEIRYVYVPSKE 106
           C++AGN+SPIDV +H+P +CEE EI YVY+PS+E
Sbjct: 88  CILAGNVSPIDVYSHIPGICEEKEIPYVYIPSRE 121

[Close]

BLAST of Cucsat.G14670 vs. NCBI nr
Match: XP_004137455.1 (H/ACA ribonucleoprotein complex subunit 2-like protein [Cucumis sativus] >KGN64091.1 hypothetical protein Csa_013891 [Cucumis sativus])

HSP 1 Score: 199 bits (505), Expect = 3.90e-63
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0


Query: 1   MGSDSEAEKSRLKDKEKEKKLLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKEV 60
           MGSDSEAEKSRLKDKEKEKKLLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKEV
Sbjct: 1   MGSDSEAEKSRLKDKEKEKKLLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKEV 60

Query: 61  VKSIRRGQKGLCVIAGNISPIDVITHVPILCEESEIRYVYVPSKE 105
           VKSIRRGQKGLCVIAGNISPIDVITHVPILCEESEIRYVYVPSKE
Sbjct: 61  VKSIRRGQKGLCVIAGNISPIDVITHVPILCEESEIRYVYVPSKE 105

[Close]

BLAST of Cucsat.G14670 vs. NCBI nr
Match: XP_008454886.1 (PREDICTED: H/ACA ribonucleoprotein complex subunit 2-like protein [Cucumis melo] >TYJ98965.1 H/ACA ribonucleoprotein complex subunit 2-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 191 bits (484), Expect = 6.37e-60
Identity = 103/106 (97.17%), Postives = 104/106 (98.11%), Query Frame = 0


Query: 1   MGSDSEAEKSRLKDKEKEKK-LLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE 60
           MGSDSEAEKSR KDKEKEKK LLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE
Sbjct: 1   MGSDSEAEKSRQKDKEKEKKKLLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE 60

Query: 61  VVKSIRRGQKGLCVIAGNISPIDVITHVPILCEESEIRYVYVPSKE 105
           VVKSIRRGQKGLCVIAGNISPIDVITHVPILCEES+IRYVYVPSKE
Sbjct: 61  VVKSIRRGQKGLCVIAGNISPIDVITHVPILCEESDIRYVYVPSKE 106

[Close]

BLAST of Cucsat.G14670 vs. NCBI nr
Match: XP_022955313.1 (H/ACA ribonucleoprotein complex subunit 2-like protein [Cucurbita moschata])

HSP 1 Score: 188 bits (478), Expect = 5.22e-59
Identity = 101/106 (95.28%), Postives = 103/106 (97.17%), Query Frame = 0


Query: 1   MGSDSEAEKSRLKDKEKEKK-LLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE 60
           MGSDSEAEKS LKDKEKEKK LLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE
Sbjct: 1   MGSDSEAEKSHLKDKEKEKKKLLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE 60

Query: 61  VVKSIRRGQKGLCVIAGNISPIDVITHVPILCEESEIRYVYVPSKE 105
           VVKSIRRGQKG CVIAGNISPIDVITHVPILCEE++IRYVYVPSKE
Sbjct: 61  VVKSIRRGQKGFCVIAGNISPIDVITHVPILCEEADIRYVYVPSKE 106

[Close]

BLAST of Cucsat.G14670 vs. NCBI nr
Match: XP_023541121.1 (H/ACA ribonucleoprotein complex subunit 2-like protein [Cucurbita pepo subsp. pepo])

HSP 1 Score: 188 bits (478), Expect = 5.22e-59
Identity = 101/106 (95.28%), Postives = 103/106 (97.17%), Query Frame = 0


Query: 1   MGSDSEAEKSRLKDKEKEKK-LLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE 60
           MGSDSEAEKS LKDKEKEKK LLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE
Sbjct: 1   MGSDSEAEKSHLKDKEKEKKKLLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE 60

Query: 61  VVKSIRRGQKGLCVIAGNISPIDVITHVPILCEESEIRYVYVPSKE 105
           VVKSIRRGQKG CVIAGNISPIDVITHVPILCEE++IRYVYVPSKE
Sbjct: 61  VVKSIRRGQKGFCVIAGNISPIDVITHVPILCEEADIRYVYVPSKE 106

[Close]

BLAST of Cucsat.G14670 vs. NCBI nr
Match: XP_038894923.1 (H/ACA ribonucleoprotein complex subunit 2-like protein [Benincasa hispida])

HSP 1 Score: 186 bits (472), Expect = 4.28e-58
Identity = 100/106 (94.34%), Postives = 103/106 (97.17%), Query Frame = 0


Query: 1   MGSDSEAEKSRLKDKEKEKK-LLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE 60
           MGSDSEAEKS  KDK+KEKK LLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE
Sbjct: 1   MGSDSEAEKSHQKDKKKEKKKLLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE 60

Query: 61  VVKSIRRGQKGLCVIAGNISPIDVITHVPILCEESEIRYVYVPSKE 105
           VVKSIRRGQKGLCVIAGNISPIDVITHVPILCEE++IRYVYVPSKE
Sbjct: 61  VVKSIRRGQKGLCVIAGNISPIDVITHVPILCEEADIRYVYVPSKE 106

[Close]

BLAST of Cucsat.G14670 vs. ExPASy TrEMBL
Match: A0A0A0LVP3 (Ribonucloprotein OS=Cucumis sativus OX=3659 GN=Csa_1G041530 PE=3 SV=1)

HSP 1 Score: 199 bits (505), Expect = 1.89e-63
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0


Query: 1   MGSDSEAEKSRLKDKEKEKKLLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKEV 60
           MGSDSEAEKSRLKDKEKEKKLLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKEV
Sbjct: 1   MGSDSEAEKSRLKDKEKEKKLLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKEV 60

Query: 61  VKSIRRGQKGLCVIAGNISPIDVITHVPILCEESEIRYVYVPSKE 105
           VKSIRRGQKGLCVIAGNISPIDVITHVPILCEESEIRYVYVPSKE
Sbjct: 61  VKSIRRGQKGLCVIAGNISPIDVITHVPILCEESEIRYVYVPSKE 105

[Close]

BLAST of Cucsat.G14670 vs. ExPASy TrEMBL
Match: A0A5D3BKS6 (Ribonucloprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G001680 PE=3 SV=1)

HSP 1 Score: 191 bits (484), Expect = 3.08e-60
Identity = 103/106 (97.17%), Postives = 104/106 (98.11%), Query Frame = 0


Query: 1   MGSDSEAEKSRLKDKEKEKK-LLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE 60
           MGSDSEAEKSR KDKEKEKK LLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE
Sbjct: 1   MGSDSEAEKSRQKDKEKEKKKLLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE 60

Query: 61  VVKSIRRGQKGLCVIAGNISPIDVITHVPILCEESEIRYVYVPSKE 105
           VVKSIRRGQKGLCVIAGNISPIDVITHVPILCEES+IRYVYVPSKE
Sbjct: 61  VVKSIRRGQKGLCVIAGNISPIDVITHVPILCEESDIRYVYVPSKE 106

[Close]

BLAST of Cucsat.G14670 vs. ExPASy TrEMBL
Match: A0A1S3C0C8 (Ribonucloprotein OS=Cucumis melo OX=3656 GN=LOC103495169 PE=3 SV=1)

HSP 1 Score: 191 bits (484), Expect = 3.08e-60
Identity = 103/106 (97.17%), Postives = 104/106 (98.11%), Query Frame = 0


Query: 1   MGSDSEAEKSRLKDKEKEKK-LLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE 60
           MGSDSEAEKSR KDKEKEKK LLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE
Sbjct: 1   MGSDSEAEKSRQKDKEKEKKKLLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE 60

Query: 61  VVKSIRRGQKGLCVIAGNISPIDVITHVPILCEESEIRYVYVPSKE 105
           VVKSIRRGQKGLCVIAGNISPIDVITHVPILCEES+IRYVYVPSKE
Sbjct: 61  VVKSIRRGQKGLCVIAGNISPIDVITHVPILCEESDIRYVYVPSKE 106

[Close]

BLAST of Cucsat.G14670 vs. ExPASy TrEMBL
Match: A0A6J1GTK9 (Ribonucloprotein OS=Cucurbita moschata OX=3662 GN=LOC111457314 PE=3 SV=1)

HSP 1 Score: 188 bits (478), Expect = 2.53e-59
Identity = 101/106 (95.28%), Postives = 103/106 (97.17%), Query Frame = 0


Query: 1   MGSDSEAEKSRLKDKEKEKK-LLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE 60
           MGSDSEAEKS LKDKEKEKK LLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE
Sbjct: 1   MGSDSEAEKSHLKDKEKEKKKLLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE 60

Query: 61  VVKSIRRGQKGLCVIAGNISPIDVITHVPILCEESEIRYVYVPSKE 105
           VVKSIRRGQKG CVIAGNISPIDVITHVPILCEE++IRYVYVPSKE
Sbjct: 61  VVKSIRRGQKGFCVIAGNISPIDVITHVPILCEEADIRYVYVPSKE 106

[Close]

BLAST of Cucsat.G14670 vs. ExPASy TrEMBL
Match: A0A6J1K350 (Ribonucloprotein OS=Cucurbita maxima OX=3661 GN=LOC111490234 PE=3 SV=1)

HSP 1 Score: 185 bits (469), Expect = 5.93e-58
Identity = 100/106 (94.34%), Postives = 102/106 (96.23%), Query Frame = 0


Query: 1   MGSDSEAEKSRLKDKEKEKK-LLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE 60
           M SDSEAEKS LKDKEKEKK LLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE
Sbjct: 1   MVSDSEAEKSHLKDKEKEKKKLLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE 60

Query: 61  VVKSIRRGQKGLCVIAGNISPIDVITHVPILCEESEIRYVYVPSKE 105
           VVKSIRRGQKG CVIAGNISPIDVITHVPILCEE++IRYVYVPSKE
Sbjct: 61  VVKSIRRGQKGFCVIAGNISPIDVITHVPILCEEADIRYVYVPSKE 106

The following BLAST results are available for this feature:

BLAST of Cucsat.G14670 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LEY9	1.6e-36	80.00	H/ACA ribonucleoprotein complex subunit 2-like protein OS=Arabidopsis thaliana O...	[more]
P32495	4.5e-23	51.85	H/ACA ribonucleoprotein complex subunit NHP2 OS=Saccharomyces cerevisiae (strain...	[more]
Q9P7H0	2.5e-21	51.40	H/ACA ribonucleoprotein complex subunit nhp2 OS=Schizosaccharomyces pombe (strai...	[more]
Q60YI3	6.1e-20	51.06	Putative H/ACA ribonucleoprotein complex subunit 2-like protein OS=Caenorhabditi...	[more]
Q9XXD4	1.0e-19	52.13	Putative H/ACA ribonucleoprotein complex subunit 2-like protein OS=Caenorhabditi...	[more]

BLAST of Cucsat.G14670 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004137455.1	3.90e-63	100.00	H/ACA ribonucleoprotein complex subunit 2-like protein [Cucumis sativus] >KGN640...	[more]
XP_008454886.1	6.37e-60	97.17	PREDICTED: H/ACA ribonucleoprotein complex subunit 2-like protein [Cucumis melo]...	[more]
XP_022955313.1	5.22e-59	95.28	H/ACA ribonucleoprotein complex subunit 2-like protein [Cucurbita moschata]	[more]
XP_023541121.1	5.22e-59	95.28	H/ACA ribonucleoprotein complex subunit 2-like protein [Cucurbita pepo subsp. pe...	[more]
XP_038894923.1	4.28e-58	94.34	H/ACA ribonucleoprotein complex subunit 2-like protein [Benincasa hispida]	[more]

BLAST of Cucsat.G14670 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LVP3	1.89e-63	100.00	Ribonucloprotein OS=Cucumis sativus OX=3659 GN=Csa_1G041530 PE=3 SV=1	[more]
A0A5D3BKS6	3.08e-60	97.17	Ribonucloprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G001...	[more]
A0A1S3C0C8	3.08e-60	97.17	Ribonucloprotein OS=Cucumis melo OX=3656 GN=LOC103495169 PE=3 SV=1	[more]
A0A6J1GTK9	2.53e-59	95.28	Ribonucloprotein OS=Cucurbita moschata OX=3662 GN=LOC111457314 PE=3 SV=1	[more]
A0A6J1K350	5.93e-58	94.34	Ribonucloprotein OS=Cucurbita maxima OX=3661 GN=LOC111490234 PE=3 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR018492	Ribosomal protein L7Ae/L8/Nhp2 family	PRINTS	PR00881	L7ARS6FAMILY	coord: 72..85 score: 29.87 coord: 53..67 score: 36.97 coord: 88..98 score: 44.63 coord: 98..112 score: 36.06
IPR002415	H/ACA ribonucleoprotein complex, subunit Nhp2, eukaryote	PRINTS	PR00883	NUCLEARHMG	coord: 39..54 score: 41.25 coord: 100..112 score: 43.08 coord: 26..39 score: 50.0 coord: 56..66 score: 43.64
IPR004038	Ribosomal protein L7Ae/L30e/S12e/Gadd45	PFAM	PF01248	Ribosomal_L7Ae	coord: 41..125 e-value: 1.3E-23 score: 82.6
IPR029064	50S ribosomal protein L30e-like	GENE3D	3.30.1330.30		coord: 18..154 e-value: 5.9E-49 score: 166.9
IPR029064	50S ribosomal protein L30e-like	SUPERFAMILY	55315	L30e-like	coord: 19..131
None	No IPR available	PANTHER	PTHR23105	RIBOSOMAL PROTEIN L7AE FAMILY MEMBER	coord: 2..156
None	No IPR available	PANTHER	PTHR23105:SF146	SUBFAMILY NOT NAMED	coord: 2..156

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsat.G14670.T1	Cucsat.G14670.T1	mRNA
Cucsat.G14670.T5	Cucsat.G14670.T5	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000469	cleavage involved in rRNA processing
biological_process	GO:0000470	maturation of LSU-rRNA
biological_process	GO:0031118	rRNA pseudouridine synthesis
biological_process	GO:0031120	snRNA pseudouridine synthesis
cellular_component	GO:0031429	box H/ACA snoRNP complex
cellular_component	GO:0005730	nucleolus
molecular_function	GO:0034513	box H/ACA snoRNA binding
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003723	RNA binding