Cucsat.G14147 (gene) Cucumber (B10) v3

Overview


Name	Cucsat.G14147
Type	gene
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	Single-stranded DNA-binding protein
Location	ctg1869: 3257753 .. 3260476 (-)
RNA-Seq Expression	Cucsat.G14147
Synteny	Cucsat.G14147

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ACCCGCATCATAATCCAGATTACGGTTCGGGTCGGTTCGACTATCTGAAGGGTTCTAACTTTCTAGGGTTTAAGCCATGCGCTAAACTTCTGAGTTTCTCTACAGATTGCCAATTACGAAGACGATGACCTCCATGGTTGCACTGTCAAGAAGGCTTTGCCGCTCTCTCCTATCGAATTCAAAAGCTTCTCATCATTACGATATCCTCCCAGTAACCTATTGCACTAATAACCTTTCCTTCCGCTCGGTATCAGACATCACTGAGTCCGGTATTGAATCGGACTTGTACACGGAATTGGACTCAAATTCAGTAACTAATCAACCTTCTCTCTCACCGTCCTCGTCCCAATCACCCACCCAACCGAGACCGGTCTATAATCGACCTCTGGAAAATGGCCTCGATGCTGGCATTTATAAGGTACGTTGGATGATGTATAGGTGCTTTGAGACTTTCGATTCTCGATGTTTTTTTGCTTACATTTTCATCTTATTGACATTTCGTGTTTGCTTGAAGGCTATATTGGTGGGTAAGGTGGGGCAAAGTCCATTGCAGAAGCAGCTGAAGAGTGGAAGAACAGTGACGCTGTTATCAGTTGGGACAGGGGGTATTCGTAATAATCGGAGACCCTTGGCTAACGAGGAACCCAGAGAGTATGCAAATCGGTGCGCAGTTCAATGGCATCGGGTTTCGATTTATCCTACGAGACTGGGCAATATCGTCATGAAGCATGTTGTGCCCGGGTAAGCATTTCAGTCTTGATCATTTACCTGAGGTACATGGAGATAATATCATAGAAATTTATTTATATTCTGCCATCAATTCTTAACAACGAGCTTATGTTTGATTAGTATAGTGATGGGAAGCTGTACTCGATTAATTTGAATTCCAAACTGTGCCCGTTATTAACTTTGTAGTTATCGTTTTTTTCTGGTTCATGTTACTCCGTTTCTCACAAAAGATATTGTTGTAGTCTTAGTTTCGCTGTTCTTTGTTGCAGCTTTATTCTTACAGTGTAAATTTGTCCTTGTCAGTTCAATTTTGTATTTGGAAGGGAACTTGGAGACCAAAATCTTCACTGATCAAGTCACTGGTCTTGTTCGACGTATTAGAGAAGTTGCGATTCGTGGCAATGGTACATCACTTACCCCTTCATTCTTTAAAGCGGTCTTTTGTGGTTTTTTTAATCATATGTTCTTTCAAACGGTTTCTTTTACAAAAGAAAATGGTACAACCCTTGTTATGTTTTAGTACCCTGCTTCTATGAATATAGAGTTCCTCATGTATTATGGCTACTTAATTAAACTACATACCATTTGTGTCATCTTTAATAAAAAAGAATTCGGCAAGTTTTGTTCTGAACTGTGACGAAGGTACAGCCTCTTTACGATGTGAATGTCCTTTCTTGGACGTGATATGTATTTTAACTAAAAAAAGAAAAGCAAATTTATTTTCTTCTGTAGGCTGAAAAACCTATATAGATTCTGACCGACTGGTATTTGAATTATAATGTTGGGTCTATGGTTTTTCCATTTGTTTTTTCATGGCCTGATTCTTTGTGAATCGGAGGAATTATAAAGAATTTGATTGCTTTTGTGCTGACTTGACATTCATGCATGCTGAAACAAATGGCCCTAGGATCACCACATATGACCTCCGTTGATAAAGTTTGGTTGTTATGTAGGACGGCTTGTATTTTTGGGGAAGGGAGAAGGTAATGCTCAGGAGTCCACCCCATCAGAATTCAGAGGTGTTGGCTATTACTAAGAGACGTTTGCAGTTTTGTCATCTGAAGGTTTGAATCACCCACTTCTCTCTGTAAATGCTGTTATTTCACTTCACAGACTTGCAATAAGACATTCAGAAAAGGATCTACTGCATGGCCTAGTGATGATTCCCTTCCCCCCCCCCCCCCCACCCTCTGTCGAGCGACAAATGTCTTTGATATTTATACGATTTAAATGAATTTGATTGAGAGAGAATTGAAATCCACTTCTTCATTGTTTTTCAACCGTGTACACGACTTGTTGTTTCTTTTGAGATGTTTATTTTGTGCTTGCATGTTCAGTTGCAGGGGTCATGGGCATAGTTATGGTTAGACAGAGTGAATGCTGTCTTTTTGTGAAACAAGCATCAGTACTTTCAATGCGCAAGACAATCTTTGATGGGTTATTAGAGGCACATGTGTGAGCAATGGAGCCACATAATGTATGAGTATGAGTTGGTAGATTGAAAATTGAAATTCAAATGCCTGAATCTGATAACTGATAACTTAAAATAAAAAATGCCATAACTGGGAATGATTGAGTTTCGTACATTGTGATGCTATGTATTTTCAATAATAGACAATGAATGAAATTGGCATTTTCTAGAAAATAGATACTAAAAATATGACAGAAGATTGTGTTTGGTTCGTAATGGTGCAGAAAGGGATAATAAGGTGACGGATAATCTACAAAAAGCAACGTGAAGGTGACTGAGATGATTGCTGGAGGGAAACTTGCTTCTCATCAAACTGCTTTTGGTGTAGAAAAATTGTTCCGAACGTTAGAAGAAAAGTTAATGTATTTGAATGTCTTTTTCTATAATTTAACCTAAATTAAACAATTGAAAGGTGTCACTTAACATTTCTCGTGATCAAATTGGTGATGTGTTAAAATTATTGCTCCGAATAGAATCATAATGTTTCGTACTACAAAATTCCTATGAACCTTTAATACATTGAATCCAAGAGAAGTATGTATTTAGAGAGTATTTGGGATTAGAAGTCCGAAGATCTGTAAAACTTAAAGCCTATGTA

Coding sequence (CDS)

ATGACCTCCATGGTTGCACTGTCAAGAAGGCTTTGCCGCTCTCTCCTATCGAATTCAAAAGCTTCTCATCATTACGATATCCTCCCAGTAACCTATTGCACTAATAACCTTTCCTTCCGCTCGGTATCAGACATCACTGAGTCCGGTATTGAATCGGACTTGTACACGGAATTGGACTCAAATTCAGTAACTAATCAACCTTCTCTCTCACCGTCCTCGTCCCAATCACCCACCCAACCGAGACCGGTCTATAATCGACCTCTGGAAAATGGCCTCGATGCTGGCATTTATAAGGCTATATTGGTGGGTAAGGTGGGGCAAAGTCCATTGCAGAAGCAGCTGAAGAGTGGAAGAACAGTGACGCTGTTATCAGTTGGGACAGGGGGTATTCGTAATAATCGGAGACCCTTGGCTAACGAGGAACCCAGAGAGTATGCAAATCGGTGCGCAGTTCAATGGCATCGGGTTTCGATTTATCCTACGAGACTGGGCAATATCGTCATGAAGCATGTTGTGCCCGGTTCAATTTTGTATTTGGAAGGGAACTTGGAGACCAAAATCTTCACTGATCAAGTCACTGGTCTTGTTCGACGTATTAGAGAAGTTGCGATTCGTGGCAATGGACGGCTTGTATTTTTGGGGAAGGGAGAAGGTAATGCTCAGGAGTCCACCCCATCAGAATTCAGAGGTGTTGGCTATTACTAA

Protein sequence

MTSMVALSRRLCRSLLSNSKASHHYDILPVTYCTNNLSFRSVSDITESGIESDLYTELDSNSVTNQPSLSPSSSQSPTQPRPVYNRPLENGLDAGIYKAILVGKVGQSPLQKQLKSGRTVTLLSVGTGGIRNNRRPLANEEPREYANRCAVQWHRVSIYPTRLGNIVMKHVVPGSILYLEGNLETKIFTDQVTGLVRRIREVAIRGNGRLVFLGKGEGNAQESTPSEFRGVGYY

Homology

[Close]

BLAST of Cucsat.G14147 vs. ExPASy Swiss-Prot
Match: Q84J78 (Single-stranded DNA-binding protein, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At4g11060 PE=2 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 5.3e-21
Identity = 56/171 (32.75%), Postives = 98/171 (57.31%), Query Frame = 0


Query: 47  ESGIESDLYTELDSNSVTNQPSLSPSSSQSPTQPRPVYNRPLENGLDAGIYKAILVGKVG 106
           + G+E D        +VT +P L P        PR  +          G+++AI+ GKVG
Sbjct: 38  DEGVEEDF-----EENVTERPELQPHG----VDPRKGWG-------FRGVHRAIICGKVG 97

Query: 107 QSPLQKQLKSGRTVTLLSVGTGGIRNNRRPLANEEPREYANRCAVQWHRVSIYPTRLGNI 166
           Q+PLQK L++GRTVT+ +VGTGG+ + R   A  +P+        QWHR++++   LG+ 
Sbjct: 98  QAPLQKILRNGRTVTIFTVGTGGMFDQRLVGATNQPK------PAQWHRIAVHNEVLGSY 157

Query: 167 VMKHVVPGSILYLEGNLETKIFTDQVTGLVRRIREVAIRGNGRLVFLGKGE 218
            ++ +   S +Y+EG++ET+++ D ++  V+ I E+ +R +G++  +  GE
Sbjct: 158 AVQKLAKNSSVYVEGDIETRVYNDSISSEVKSIPEICVRRDGKIRMIKYGE 186

[Close]

BLAST of Cucsat.G14147 vs. ExPASy Swiss-Prot
Match: Q8UF87 (Single-stranded DNA-binding protein OS=Agrobacterium fabrum (strain C58 / ATCC 33970) OX=176299 GN=ssb PE=3 SV=2)

HSP 1 Score: 66.2 bits (160), Expect = 5.5e-10
Identity = 45/141 (31.91%), Postives = 69/141 (48.94%), Query Frame = 0


Query: 96  IYKAILVGKVGQSPLQKQLKSGRTVTLLSVGTGGIRNNRRPLANEEPREYANRCAVQWHR 155
           + K IL+G VG  P  ++ + GR +  L + T     +R     +E  E        WH 
Sbjct: 5   VNKVILIGNVGADPEIRRTQDGRPIANLRIATSETWRDRNSGERKEKTE--------WHT 64

Query: 156 VSIYPTRLGNIVMKHVVPGSILYLEGNLETKIFTDQVTGLVRRIREVAIRG-NGRLVFL- 215
           V ++   L  +V ++V  G+ LY+EG L+T+ + DQ TG  R   E+ ++G N  L  L 
Sbjct: 65  VVVFNEGLCKVVEQYVKKGAKLYIEGQLQTRKWQDQ-TGNDRYSTEIVLQGFNSTLTMLD 124

Query: 216 GKGEGNAQESTPSEFRGVGYY 235
           G+GEG    S   +F G   Y
Sbjct: 125 GRGEGGGGRSGGGDFGGGNDY 136

[Close]

BLAST of Cucsat.G14147 vs. ExPASy Swiss-Prot
Match: Q8DCJ0 (Single-stranded DNA-binding protein OS=Vibrio vulnificus (strain CMCP6) OX=216895 GN=ssb PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 9.3e-10
Identity = 48/141 (34.04%), Postives = 72/141 (51.06%), Query Frame = 0


Query: 95  GIYKAILVGKVGQSPLQKQLKSGRTVTLLSVGTGGIRNNRRPLANEEPREYANRCAVQWH 154
           GI K ILVG +G  P  + + SG  V  ++V T       R  A  EPRE       +WH
Sbjct: 5   GINKVILVGNLGNDPEIRYMPSGGAVANITVATS---ETWRDKATGEPRE-----KTEWH 64

Query: 155 RVSIYPTRLGNIVMKHVVPGSILYLEGNLETKIFTDQVTGLVRRIREVAIRG-NGRLVFL 214
           RV++Y  +L  +  +++  GS +Y+EG L+T+ + DQ  G  R   EV ++G NG +  L
Sbjct: 65  RVTLY-GKLAEVAGEYLRKGSQVYIEGQLQTRKWQDQ-NGQDRYSTEVVVQGYNGIMQML 124

Query: 215 G----KGEGNAQESTPSEFRG 231
           G    +G   A    P + +G
Sbjct: 125 GGRQQQGGAPAMGGAPQQQQG 135

[Close]

BLAST of Cucsat.G14147 vs. ExPASy Swiss-Prot
Match: Q8D254 (Single-stranded DNA-binding protein OS=Wigglesworthia glossinidia brevipalpis OX=36870 GN=ssb PE=3 SV=2)

HSP 1 Score: 65.1 bits (157), Expect = 1.2e-09
Identity = 41/120 (34.17%), Postives = 65/120 (54.17%), Query Frame = 0


Query: 95  GIYKAILVGKVGQSPLQKQLKSGRTVTLLSVGTGGIRNNRRPLANEEPREYANRCAVQWH 154
           GI K IL+G +GQ P  + + +G  +T LS+ T     N R     E +E       +WH
Sbjct: 5   GINKVILIGNLGQDPEVRYIPNGNAITNLSLATS---ENWRDKNTGESKE-----KTEWH 64

Query: 155 RVSIYPTRLGNIVMKHVVPGSILYLEGNLETKIFTDQVTGLVRRIREVAIRGNGRLVFLG 214
           RV ++  +L  +  +++  GS +Y+EGNL+T+ + DQ  G  R I E+ +  NG +  LG
Sbjct: 65  RVILF-GKLAEVAGEYLKKGSQVYIEGNLQTRKWQDQ-NGQDRYITEIVVGINGCMQMLG 114

[Close]

BLAST of Cucsat.G14147 vs. ExPASy Swiss-Prot
Match: P57610 (Single-stranded DNA-binding protein OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS) OX=107806 GN=ssb PE=3 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.6e-09
Identity = 39/138 (28.26%), Postives = 69/138 (50.00%), Query Frame = 0


Query: 95  GIYKAILVGKVGQSPLQKQLKSGRTVTLLSVGTGGIRNNRRPLANEEPREYANRCAVQWH 154
           G+ K IL+G +GQ P  + + +G  V  +++ T     ++    N+E  E        WH
Sbjct: 5   GVNKVILIGHLGQDPEVRYMPNGNAVVNMTLATSENWKDKNTGENKEKTE--------WH 64

Query: 155 RVSIYPTRLGNIVMKHVVPGSILYLEGNLETKIFTDQVTGLVRRIREVAIRGNGRLVFLG 214
           R+ ++  +L  I  +++  GS +Y+EG+L+T+ + DQ  GL R   E+ +   G +  LG
Sbjct: 65  RIVLF-GKLAEIAGEYLRKGSQVYIEGSLQTRKWQDQ-NGLERYTTEIIVNIGGTMQMLG 124

Query: 215 KGEGNAQESTPSEFRGVG 233
               N Q  T ++    G
Sbjct: 125 NRNSNLQAMTVNDKNSTG 132

[Close]

BLAST of Cucsat.G14147 vs. NCBI nr
Match: XP_011650431.1 (single-stranded DNA-binding protein, mitochondrial [Cucumis sativus] >XP_031745512.1 single-stranded DNA-binding protein, mitochondrial [Cucumis sativus] >KGN64102.1 hypothetical protein Csa_013261 [Cucumis sativus])

HSP 1 Score: 458 bits (1178), Expect = 2.37e-162
Identity = 234/234 (100.00%), Postives = 234/234 (100.00%), Query Frame = 0


Query: 1   MTSMVALSRRLCRSLLSNSKASHHYDILPVTYCTNNLSFRSVSDITESGIESDLYTELDS 60
           MTSMVALSRRLCRSLLSNSKASHHYDILPVTYCTNNLSFRSVSDITESGIESDLYTELDS
Sbjct: 1   MTSMVALSRRLCRSLLSNSKASHHYDILPVTYCTNNLSFRSVSDITESGIESDLYTELDS 60

Query: 61  NSVTNQPSLSPSSSQSPTQPRPVYNRPLENGLDAGIYKAILVGKVGQSPLQKQLKSGRTV 120
           NSVTNQPSLSPSSSQSPTQPRPVYNRPLENGLDAGIYKAILVGKVGQSPLQKQLKSGRTV
Sbjct: 61  NSVTNQPSLSPSSSQSPTQPRPVYNRPLENGLDAGIYKAILVGKVGQSPLQKQLKSGRTV 120

Query: 121 TLLSVGTGGIRNNRRPLANEEPREYANRCAVQWHRVSIYPTRLGNIVMKHVVPGSILYLE 180
           TLLSVGTGGIRNNRRPLANEEPREYANRCAVQWHRVSIYPTRLGNIVMKHVVPGSILYLE
Sbjct: 121 TLLSVGTGGIRNNRRPLANEEPREYANRCAVQWHRVSIYPTRLGNIVMKHVVPGSILYLE 180

Query: 181 GNLETKIFTDQVTGLVRRIREVAIRGNGRLVFLGKGEGNAQESTPSEFRGVGYY 234
           GNLETKIFTDQVTGLVRRIREVAIRGNGRLVFLGKGEGNAQESTPSEFRGVGYY
Sbjct: 181 GNLETKIFTDQVTGLVRRIREVAIRGNGRLVFLGKGEGNAQESTPSEFRGVGYY 234

[Close]

BLAST of Cucsat.G14147 vs. NCBI nr
Match: XP_008455960.1 (PREDICTED: single-stranded DNA-binding protein, mitochondrial [Cucumis melo])

HSP 1 Score: 428 bits (1100), Expect = 1.84e-150
Identity = 220/234 (94.02%), Postives = 225/234 (96.15%), Query Frame = 0


Query: 1   MTSMVALSRRLCRSLLSNSKASHHYDILPVTYCTNNLSFRSVSDITESGIESDLYTELDS 60
           MTS VALSRRLCRSLLSNSKASHH+DILPVTYCTNNLSFRSVSDITESGIESDLY+ELDS
Sbjct: 1   MTSTVALSRRLCRSLLSNSKASHHHDILPVTYCTNNLSFRSVSDITESGIESDLYSELDS 60

Query: 61  NSVTNQPSLSPSSSQSPTQPRPVYNRPLENGLDAGIYKAILVGKVGQSPLQKQLKSGRTV 120
           NSVTNQPS SPSSSQSPTQ R VY+RPLENGLDAGI+KAILVGKVGQSPLQKQLKSGRTV
Sbjct: 61  NSVTNQPSFSPSSSQSPTQSRKVYDRPLENGLDAGIFKAILVGKVGQSPLQKQLKSGRTV 120

Query: 121 TLLSVGTGGIRNNRRPLANEEPREYANRCAVQWHRVSIYPTRLGNIVMKHVVPGSILYLE 180
           TLLSVGTGGIRNNRRPLANEEPREYANRCAVQWHRVSIYP RLGNIVMKH VPGSI+YLE
Sbjct: 121 TLLSVGTGGIRNNRRPLANEEPREYANRCAVQWHRVSIYPQRLGNIVMKHAVPGSIMYLE 180

Query: 181 GNLETKIFTDQVTGLVRRIREVAIRGNGRLVFLGKGEGNAQESTPSEFRGVGYY 234
           GNLETKIFTDQVTGLVRRIREVAIRGNGRLVFLGK EGNAQEST SE RGVGYY
Sbjct: 181 GNLETKIFTDQVTGLVRRIREVAIRGNGRLVFLGKEEGNAQESTSSELRGVGYY 234

[Close]

BLAST of Cucsat.G14147 vs. NCBI nr
Match: TYJ98975.1 (single-stranded DNA-binding protein [Cucumis melo var. makuwa])

HSP 1 Score: 421 bits (1081), Expect = 4.73e-147
Identity = 217/231 (93.94%), Postives = 222/231 (96.10%), Query Frame = 0


Query: 1   MTSMVALSRRLCRSLLSNSKASHHYDILPVTYCTNNLSFRSVSDITESGIESDLYTELDS 60
           MTS VALSRRLCRSLLSNSKASHH+DILPVTYCTNNLSFRSVSDITESGIESDLY+ELDS
Sbjct: 1   MTSTVALSRRLCRSLLSNSKASHHHDILPVTYCTNNLSFRSVSDITESGIESDLYSELDS 60

Query: 61  NSVTNQPSLSPSSSQSPTQPRPVYNRPLENGLDAGIYKAILVGKVGQSPLQKQLKSGRTV 120
           NSVTNQPS SPSSSQSPTQ R VY+RPLENGLDAGI+KAILVGKVGQSPLQKQLKSGRTV
Sbjct: 61  NSVTNQPSFSPSSSQSPTQSRKVYDRPLENGLDAGIFKAILVGKVGQSPLQKQLKSGRTV 120

Query: 121 TLLSVGTGGIRNNRRPLANEEPREYANRCAVQWHRVSIYPTRLGNIVMKHVVPGSILYLE 180
           TLLSVGTGGIRNNRRPLANEEPREYANRCAVQWHRVSIYP RLGNIVMKH VPGSI+YLE
Sbjct: 121 TLLSVGTGGIRNNRRPLANEEPREYANRCAVQWHRVSIYPQRLGNIVMKHAVPGSIMYLE 180

Query: 181 GNLETKIFTDQVTGLVRRIREVAIRGNGRLVFLGKGEGNAQESTPSEFRGV 231
           GNLETKIFTDQVTGLVRRIREVAIRGNGRLVFLGK EGNAQEST SE RGV
Sbjct: 181 GNLETKIFTDQVTGLVRRIREVAIRGNGRLVFLGKEEGNAQESTSSELRGV 231

[Close]

BLAST of Cucsat.G14147 vs. NCBI nr
Match: XP_038895598.1 (single-stranded DNA-binding protein, mitochondrial-like [Benincasa hispida] >XP_038895599.1 single-stranded DNA-binding protein, mitochondrial-like [Benincasa hispida])

HSP 1 Score: 394 bits (1012), Expect = 4.41e-137
Identity = 205/234 (87.61%), Postives = 216/234 (92.31%), Query Frame = 0


Query: 1   MTSMVALSRRLCRSLLSNSKASHHYDILPVTYCTNNLSFRSVSDITESGIESDLYTELDS 60
           MTSM ALSRRLCRSLLSNSKASHH++ILPVT CTNNLSFRSVSDITES IESDL  + DS
Sbjct: 1   MTSMAALSRRLCRSLLSNSKASHHHNILPVTSCTNNLSFRSVSDITESSIESDL--DSDS 60

Query: 61  NSVTNQPSLSPSSSQSPTQPRPVYNRPLENGLDAGIYKAILVGKVGQSPLQKQLKSGRTV 120
           +SVTN PSLSPSSSQS TQ R +YNRPLENGLDAG+YKAILVG+VGQSPLQK+LKSG TV
Sbjct: 61  HSVTNPPSLSPSSSQSSTQSRTIYNRPLENGLDAGVYKAILVGQVGQSPLQKRLKSGITV 120

Query: 121 TLLSVGTGGIRNNRRPLANEEPREYANRCAVQWHRVSIYPTRLGNIVMKHVVPGSILYLE 180
           TLLSVGTGGIRNNRRPLANEEPREYANRCAVQWHRVS+YP RLGNIVMKHVVPGSILYLE
Sbjct: 121 TLLSVGTGGIRNNRRPLANEEPREYANRCAVQWHRVSVYPQRLGNIVMKHVVPGSILYLE 180

Query: 181 GNLETKIFTDQVTGLVRRIREVAIRGNGRLVFLGKGEGNAQESTPSEFRGVGYY 234
           GNLETKIFTD  TGLVR IREVAIR NGRLVFLGKGE N Q+STPSEF+GVGYY
Sbjct: 181 GNLETKIFTDPTTGLVRSIREVAIRRNGRLVFLGKGEVNGQQSTPSEFKGVGYY 232

[Close]

BLAST of Cucsat.G14147 vs. NCBI nr
Match: XP_038893715.1 (single-stranded DNA-binding protein, mitochondrial-like [Benincasa hispida] >XP_038893716.1 single-stranded DNA-binding protein, mitochondrial-like [Benincasa hispida] >XP_038893717.1 single-stranded DNA-binding protein, mitochondrial-like [Benincasa hispida] >XP_038893718.1 single-stranded DNA-binding protein, mitochondrial-like [Benincasa hispida])

HSP 1 Score: 390 bits (1003), Expect = 1.04e-135
Identity = 202/234 (86.32%), Postives = 217/234 (92.74%), Query Frame = 0


Query: 1   MTSMVALSRRLCRSLLSNSKASHHYDILPVTYCTNNLSFRSVSDITESGIESDLYTELDS 60
           MTSM ALSRRLCRSLLSNSKASHH++ILPVTYCTNNLSFRSVSDITES IES+L  + DS
Sbjct: 1   MTSMAALSRRLCRSLLSNSKASHHHNILPVTYCTNNLSFRSVSDITESSIESNL--DSDS 60

Query: 61  NSVTNQPSLSPSSSQSPTQPRPVYNRPLENGLDAGIYKAILVGKVGQSPLQKQLKSGRTV 120
           +SVTN PSLSPSSSQS T  R +YNRPLENGLDAG+YKAILVG+VGQSPLQK+LKSG TV
Sbjct: 61  HSVTNPPSLSPSSSQSSTLSRTIYNRPLENGLDAGVYKAILVGQVGQSPLQKRLKSGITV 120

Query: 121 TLLSVGTGGIRNNRRPLANEEPREYANRCAVQWHRVSIYPTRLGNIVMKHVVPGSILYLE 180
           TLLSVGTGGIRNNRRPLANEEPREYANRCAVQWHRVS+YP RLG+IVMKHVVPGSILYLE
Sbjct: 121 TLLSVGTGGIRNNRRPLANEEPREYANRCAVQWHRVSVYPQRLGDIVMKHVVPGSILYLE 180

Query: 181 GNLETKIFTDQVTGLVRRIREVAIRGNGRLVFLGKGEGNAQESTPSEFRGVGYY 234
           GNLETKIF D  TGLVRRIREVAIR NGRL+ LGKGEG+AQ+STPSEF+GVGYY
Sbjct: 181 GNLETKIFIDPTTGLVRRIREVAIRRNGRLLLLGKGEGDAQQSTPSEFKGVGYY 232

[Close]

BLAST of Cucsat.G14147 vs. ExPASy TrEMBL
Match: A0A0A0LTL6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042140 PE=4 SV=1)

HSP 1 Score: 458 bits (1178), Expect = 1.15e-162
Identity = 234/234 (100.00%), Postives = 234/234 (100.00%), Query Frame = 0


Query: 1   MTSMVALSRRLCRSLLSNSKASHHYDILPVTYCTNNLSFRSVSDITESGIESDLYTELDS 60
           MTSMVALSRRLCRSLLSNSKASHHYDILPVTYCTNNLSFRSVSDITESGIESDLYTELDS
Sbjct: 1   MTSMVALSRRLCRSLLSNSKASHHYDILPVTYCTNNLSFRSVSDITESGIESDLYTELDS 60

Query: 61  NSVTNQPSLSPSSSQSPTQPRPVYNRPLENGLDAGIYKAILVGKVGQSPLQKQLKSGRTV 120
           NSVTNQPSLSPSSSQSPTQPRPVYNRPLENGLDAGIYKAILVGKVGQSPLQKQLKSGRTV
Sbjct: 61  NSVTNQPSLSPSSSQSPTQPRPVYNRPLENGLDAGIYKAILVGKVGQSPLQKQLKSGRTV 120

Query: 121 TLLSVGTGGIRNNRRPLANEEPREYANRCAVQWHRVSIYPTRLGNIVMKHVVPGSILYLE 180
           TLLSVGTGGIRNNRRPLANEEPREYANRCAVQWHRVSIYPTRLGNIVMKHVVPGSILYLE
Sbjct: 121 TLLSVGTGGIRNNRRPLANEEPREYANRCAVQWHRVSIYPTRLGNIVMKHVVPGSILYLE 180

Query: 181 GNLETKIFTDQVTGLVRRIREVAIRGNGRLVFLGKGEGNAQESTPSEFRGVGYY 234
           GNLETKIFTDQVTGLVRRIREVAIRGNGRLVFLGKGEGNAQESTPSEFRGVGYY
Sbjct: 181 GNLETKIFTDQVTGLVRRIREVAIRGNGRLVFLGKGEGNAQESTPSEFRGVGYY 234

[Close]

BLAST of Cucsat.G14147 vs. ExPASy TrEMBL
Match: A0A1S3C3D2 (single-stranded DNA-binding protein, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103495996 PE=4 SV=1)

HSP 1 Score: 428 bits (1100), Expect = 8.91e-151
Identity = 220/234 (94.02%), Postives = 225/234 (96.15%), Query Frame = 0


Query: 1   MTSMVALSRRLCRSLLSNSKASHHYDILPVTYCTNNLSFRSVSDITESGIESDLYTELDS 60
           MTS VALSRRLCRSLLSNSKASHH+DILPVTYCTNNLSFRSVSDITESGIESDLY+ELDS
Sbjct: 1   MTSTVALSRRLCRSLLSNSKASHHHDILPVTYCTNNLSFRSVSDITESGIESDLYSELDS 60

Query: 61  NSVTNQPSLSPSSSQSPTQPRPVYNRPLENGLDAGIYKAILVGKVGQSPLQKQLKSGRTV 120
           NSVTNQPS SPSSSQSPTQ R VY+RPLENGLDAGI+KAILVGKVGQSPLQKQLKSGRTV
Sbjct: 61  NSVTNQPSFSPSSSQSPTQSRKVYDRPLENGLDAGIFKAILVGKVGQSPLQKQLKSGRTV 120

Query: 121 TLLSVGTGGIRNNRRPLANEEPREYANRCAVQWHRVSIYPTRLGNIVMKHVVPGSILYLE 180
           TLLSVGTGGIRNNRRPLANEEPREYANRCAVQWHRVSIYP RLGNIVMKH VPGSI+YLE
Sbjct: 121 TLLSVGTGGIRNNRRPLANEEPREYANRCAVQWHRVSIYPQRLGNIVMKHAVPGSIMYLE 180

Query: 181 GNLETKIFTDQVTGLVRRIREVAIRGNGRLVFLGKGEGNAQESTPSEFRGVGYY 234
           GNLETKIFTDQVTGLVRRIREVAIRGNGRLVFLGK EGNAQEST SE RGVGYY
Sbjct: 181 GNLETKIFTDQVTGLVRRIREVAIRGNGRLVFLGKEEGNAQESTSSELRGVGYY 234

[Close]

BLAST of Cucsat.G14147 vs. ExPASy TrEMBL
Match: A0A5D3BKT6 (Single-stranded DNA-binding protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G001780 PE=4 SV=1)

HSP 1 Score: 421 bits (1081), Expect = 2.29e-147
Identity = 217/231 (93.94%), Postives = 222/231 (96.10%), Query Frame = 0


Query: 1   MTSMVALSRRLCRSLLSNSKASHHYDILPVTYCTNNLSFRSVSDITESGIESDLYTELDS 60
           MTS VALSRRLCRSLLSNSKASHH+DILPVTYCTNNLSFRSVSDITESGIESDLY+ELDS
Sbjct: 1   MTSTVALSRRLCRSLLSNSKASHHHDILPVTYCTNNLSFRSVSDITESGIESDLYSELDS 60

Query: 61  NSVTNQPSLSPSSSQSPTQPRPVYNRPLENGLDAGIYKAILVGKVGQSPLQKQLKSGRTV 120
           NSVTNQPS SPSSSQSPTQ R VY+RPLENGLDAGI+KAILVGKVGQSPLQKQLKSGRTV
Sbjct: 61  NSVTNQPSFSPSSSQSPTQSRKVYDRPLENGLDAGIFKAILVGKVGQSPLQKQLKSGRTV 120

Query: 121 TLLSVGTGGIRNNRRPLANEEPREYANRCAVQWHRVSIYPTRLGNIVMKHVVPGSILYLE 180
           TLLSVGTGGIRNNRRPLANEEPREYANRCAVQWHRVSIYP RLGNIVMKH VPGSI+YLE
Sbjct: 121 TLLSVGTGGIRNNRRPLANEEPREYANRCAVQWHRVSIYPQRLGNIVMKHAVPGSIMYLE 180

Query: 181 GNLETKIFTDQVTGLVRRIREVAIRGNGRLVFLGKGEGNAQESTPSEFRGV 231
           GNLETKIFTDQVTGLVRRIREVAIRGNGRLVFLGK EGNAQEST SE RGV
Sbjct: 181 GNLETKIFTDQVTGLVRRIREVAIRGNGRLVFLGKEEGNAQESTSSELRGV 231

[Close]

BLAST of Cucsat.G14147 vs. ExPASy TrEMBL
Match: A0A6J1KGM8 (single-stranded DNA-binding protein, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111495086 PE=4 SV=1)

HSP 1 Score: 375 bits (962), Expect = 8.84e-130
Identity = 195/234 (83.33%), Postives = 212/234 (90.60%), Query Frame = 0


Query: 1   MTSMVALSRRLCRSLLSNSKASHHYDILPVTYCTNNLSFRSVSDITESGIESDLYTELDS 60
           MTSM  LSRRL RS LSNSKASHH+DILPV Y + NLSFRSVSDI ES I+SD+  +L S
Sbjct: 1   MTSMAVLSRRLFRSFLSNSKASHHHDILPVIYSSKNLSFRSVSDIGESSIDSDM--DLGS 60

Query: 61  NSVTNQPSLSPSSSQSPTQPRPVYNRPLENGLDAGIYKAILVGKVGQSPLQKQLKSGRTV 120
           +SV+N+PSLSPSSSQS +Q R +YNRPLENGLDAGIYKAILVG+VGQSPLQKQLKSGRTV
Sbjct: 61  HSVSNRPSLSPSSSQSSSQTRTIYNRPLENGLDAGIYKAILVGQVGQSPLQKQLKSGRTV 120

Query: 121 TLLSVGTGGIRNNRRPLANEEPREYANRCAVQWHRVSIYPTRLGNIVMKHVVPGSILYLE 180
           TLLSVGTGGIRNNRRPLANEEPREYANRCAVQWHRVSIYP RLG++VMKHVVPGSILYLE
Sbjct: 121 TLLSVGTGGIRNNRRPLANEEPREYANRCAVQWHRVSIYPQRLGDVVMKHVVPGSILYLE 180

Query: 181 GNLETKIFTDQVTGLVRRIREVAIRGNGRLVFLGKGEGNAQESTPSEFRGVGYY 234
           GNLETKIFTD  TGLVRRIREVAIR +GRLVFLGKGEG+ Q+ST  EF+GVGYY
Sbjct: 181 GNLETKIFTDSTTGLVRRIREVAIRRSGRLVFLGKGEGDVQQSTQLEFKGVGYY 232

[Close]

BLAST of Cucsat.G14147 vs. ExPASy TrEMBL
Match: A0A6J1C717 (single-stranded DNA-binding protein, mitochondrial OS=Momordica charantia OX=3673 GN=LOC111008995 PE=4 SV=1)

HSP 1 Score: 375 bits (962), Expect = 8.84e-130
Identity = 193/234 (82.48%), Postives = 211/234 (90.17%), Query Frame = 0


Query: 1   MTSMVALSRRLCRSLLSNSKASHHYDILPVTYCTNNLSFRSVSDITESGIESDLYTELDS 60
           MTSM ALSR+LCRSLLSNS+ASHH + L +TYCTNN SFRS S+I +S I+SD+  + DS
Sbjct: 1   MTSMAALSRKLCRSLLSNSRASHHPEFLSMTYCTNNSSFRSGSEIGDSSIDSDM--DSDS 60

Query: 61  NSVTNQPSLSPSSSQSPTQPRPVYNRPLENGLDAGIYKAILVGKVGQSPLQKQLKSGRTV 120
           +SVTN+PS+SPSSSQS TQ R +YNRPLENGLDAGIYKAILVG+ GQSPLQKQLKSGRTV
Sbjct: 61  HSVTNRPSVSPSSSQSSTQTRMIYNRPLENGLDAGIYKAILVGQAGQSPLQKQLKSGRTV 120

Query: 121 TLLSVGTGGIRNNRRPLANEEPREYANRCAVQWHRVSIYPTRLGNIVMKHVVPGSILYLE 180
           TLLSVGTGGIRNNRRPLANEEPREYANRCAVQWHRVS+YP RLG IVMKHVVPGSILYLE
Sbjct: 121 TLLSVGTGGIRNNRRPLANEEPREYANRCAVQWHRVSVYPQRLGEIVMKHVVPGSILYLE 180

Query: 181 GNLETKIFTDQVTGLVRRIREVAIRGNGRLVFLGKGEGNAQESTPSEFRGVGYY 234
           GNLETKIFTD +TGLVRRIREVAIR NGRLVFLG G GN Q+ST SEF+GVGYY
Sbjct: 181 GNLETKIFTDPITGLVRRIREVAIRRNGRLVFLGDGGGNVQQSTQSEFKGVGYY 232

The following BLAST results are available for this feature:

BLAST of Cucsat.G14147 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q84J78	5.3e-21	32.75	Single-stranded DNA-binding protein, mitochondrial OS=Arabidopsis thaliana OX=37...	[more]
Q8UF87	5.5e-10	31.91	Single-stranded DNA-binding protein OS=Agrobacterium fabrum (strain C58 / ATCC 3...	[more]
Q8DCJ0	9.3e-10	34.04	Single-stranded DNA-binding protein OS=Vibrio vulnificus (strain CMCP6) OX=21689...	[more]
Q8D254	1.2e-09	34.17	Single-stranded DNA-binding protein OS=Wigglesworthia glossinidia brevipalpis OX...	[more]
P57610	1.6e-09	28.26	Single-stranded DNA-binding protein OS=Buchnera aphidicola subsp. Acyrthosiphon ...	[more]

BLAST of Cucsat.G14147 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011650431.1	2.37e-162	100.00	single-stranded DNA-binding protein, mitochondrial [Cucumis sativus] >XP_0317455...	[more]
XP_008455960.1	1.84e-150	94.02	PREDICTED: single-stranded DNA-binding protein, mitochondrial [Cucumis melo]	[more]
TYJ98975.1	4.73e-147	93.94	single-stranded DNA-binding protein [Cucumis melo var. makuwa]	[more]
XP_038895598.1	4.41e-137	87.61	single-stranded DNA-binding protein, mitochondrial-like [Benincasa hispida] >XP_...	[more]
XP_038893715.1	1.04e-135	86.32	single-stranded DNA-binding protein, mitochondrial-like [Benincasa hispida] >XP_...	[more]

BLAST of Cucsat.G14147 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LTL6	1.15e-162	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042140 PE=4 SV=1	[more]
A0A1S3C3D2	8.91e-151	94.02	single-stranded DNA-binding protein, mitochondrial OS=Cucumis melo OX=3656 GN=LO...	[more]
A0A5D3BKT6	2.29e-147	93.94	Single-stranded DNA-binding protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A6J1KGM8	8.84e-130	83.33	single-stranded DNA-binding protein, mitochondrial OS=Cucurbita maxima OX=3661 G...	[more]
A0A6J1C717	8.84e-130	82.48	single-stranded DNA-binding protein, mitochondrial OS=Momordica charantia OX=367...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.40.50.140		coord: 95..213 e-value: 5.1E-17 score: 63.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 60..83
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 60..87
None	No IPR available	PANTHER	PTHR10302:SF16	NUCLEIC ACID-BINDING, OB-FOLD-LIKE PROTEIN	coord: 2..234
IPR000424	Primosome PriB/single-strand DNA-binding	PFAM	PF00436	SSB	coord: 98..205 e-value: 2.7E-18 score: 65.9
IPR000424	Primosome PriB/single-strand DNA-binding	PROSITE	PS50935	SSB	coord: 96..211 score: 12.581932
IPR000424	Primosome PriB/single-strand DNA-binding	CDD	cd04496	SSB_OBF	coord: 100..205 e-value: 1.15953E-12 score: 60.3186
IPR011344	Single-stranded DNA-binding protein	PANTHER	PTHR10302	SINGLE-STRANDED DNA-BINDING PROTEIN	coord: 2..234
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 95..207

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsat.G14147.T1	Cucsat.G14147.T1	mRNA
Cucsat.G14147.T2	Cucsat.G14147.T2	mRNA
Cucsat.G14147.T4	Cucsat.G14147.T4	mRNA
Cucsat.G14147.T3	Cucsat.G14147.T3	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006264	mitochondrial DNA replication
biological_process	GO:0051096	positive regulation of helicase activity
biological_process	GO:0006260	DNA replication
cellular_component	GO:0042645	mitochondrial nucleoid
molecular_function	GO:0003697	single-stranded DNA binding