Cucsat.G14024 (gene) Cucumber (B10) v3

Overview
NameCucsat.G14024
Typegene
OrganismCucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description40S ribosomal protein S28
Locationctg1869: 1442792 .. 1447845 (-)
RNA-Seq ExpressionCucsat.G14024
SyntenyCucsat.G14024
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TCTTTCAAACGTGTGAGACTTAGGGGTATATTCGTCTTCTTCACACACGATCAAAAACCCTAGGTTTTAAGTATTTATTCCTCTCCATTTGCATTCATCAATTCTCGGGCGCCGTCTCTACAAATTCCACAGATCGTTCTCTCCGGCCTTTCTCTCGTGTTTGAGGTCAGTATTCACTCCCTTCTTCTATGCATGGTGATCTCTTTTGGCTCATACTTTTGTTTCGAATCCATACCATTGGCACCACCTCGTGTCTCCGAGATAGTTACTAAACAAGCGTTTATTTTTCGATTTTGTGTTTGTTTGCCTCTAGCGATTAGTGTGAGATTTATGGAGTGAATCTTTCGGTCAGTTGGTTGTGTGATTTTGTTACCACGATTGAATTCCTACTCTGAGGAAAATTTTTGAGTAGTTGATTAAATGGAGAACCATATTAATGTTTGTTAAATGTTTCATGATACTCAATACATTGAAGTGATTAGAATTGGAACTCGCATATGCTTTCTGAAAGTTGATTTCTTTTACACATATCCTGCACTGACATTTAATAGTTTTTCTGTTTGTCACTAGTTTTCTTGTTCCTAGAACTTAAAATTAGGTTGTTCGAATTAAGAAAGGTAGCTATGTAACTAATTGTTATCTGGTGGCAGATTGTTTAGCAAATATCTACTTGGAACTTAGAAGGGGTTATTATAAATGAAAAAGATTCTTTGAACTTGGGTTTGTGCAGGAATGGAATCTCAAATCAAGCATGCTGTTGTGGTCAAAGTAATGGGTAGAACTGGATCTAGAGGTCAAGTGACTCAAGTGAGAGTTAAGTTTCTTGATGATCAAAATCGTTACATTATGAGGAATGTCAAGGGACCAGTGAGGGAAGGTGACATTCTTACTCTGTTGGAGTCTGAGAGGGAAGCTAGAAGATTGCGTTAGATCAAACCCACACTTCACCAATTTGCAGTTGCTGAATGTTATGTTTTAACTTCAAAATAGTATTGCTCTTATCATTTTTTTCCTCTTTTATGTGTGATTTTAGTGACATTATGGTTCTAAGCCAGAATACGAGTACTTTAATTGAGTTTTGAAACCATTTATTTCAAAATTTTGTGGCTATATGCCAACTGCTCAATATTATTGGTGTTTTTTTGGAATTCTTGTTTGCTTATTTATATTCTAACTTTCTTGGGTGTAGCAGATTCTTGAGACGAGTGGTTTTGAGGTGGTTAAAATAGCTTTTGTTAGGTTTAAAAATCACTCCAAATTATATCTTTACTCATCCGAATTGTGCCTACATTAAAATGATGTTGAATGATGGAAATATGTTTTGCAGAGATTTGAACTACAACAAAATTAGACCCTAATGAAGTAATGAAGTTTATGGTTTCAAGAATATACAAGTCTATATCGGATTTATTTATTTCAGTGTTTGTACTGTTAAGTTCTGCTGGATTGAAATGGGTTTCTTTTTTTCTTTTTATATAGTTCTTTTAAGATGATAAAGGTAGTTCAATTGTGGAGTGCAGTCATGATAATATCTTCCCATTAGGATCAAGGAAGAGAATCCAAGGGGAATCTTCTAAAGCCAGTACCAAGAGAACTCATTATCCACAATCAAATGTCTCCATTTCCCATGCCAACTATGATTCAACTACCATATGTGGAACAACCAACAGTCCAACACACTCACTCAAACATGTAGTCCTCTAGAGCTCCCAATAATTCAGCAGGGATCATCAACCTTTGCTTGAGCCAATCAAAGCAATAAAAAAGGAGAAGATAGAAAAAGTTTCCTTACTTCCCTTGAAAAATTGCGTTGATTTGTAGTCTCCACAGTGAATAGAGGGAACTTCTTTGGCATATAGATTTGGAATGGTAGGAATAAGATCTCTTTCACTAGGGACTCATTAAACAAAAAAAACTACTTGAAACATTTAGCCTAATCTTGAGCCCAACTCGGGTTGAAGCCGTCTTCTTTTGGAATCCACAGTTTCCTTTTCAATTGAAATGCTTCTACCATTCCCTACTCTTCTCCAAATGCCATGAGCAGACATAATCCACCCACATGATACTCTTTATGGTATAGCCAAGGTTTGCCTTCAAGAATACTCCGTTTGGAAATTTTCTTTCCTTCAAAATTCTTGTAAGATGACTCCTTGTTCATACCCATCTTTTTCCAACTTCTCTAGTTTTTTCACTTCCTCTCCGCAAAAGAACCCCGCTAAAATCAAGCATACATTCTTTTCAAATCTTTCCTAAAGCTATTAGGAAGCTCCTCAAACAACTTATAGTATAATTTGGATCGTTAGGACATTGCTTTGATGGAACCTTTCCACCCATAGATAGCAGATTCCTTTTCAACCCTAGACCACTTCTCTAACTTTTTGCTTCACCTCATTGCAAACTTAACTTTTATCACTTGTAACTATATGAACACCAACTACTTCTAATCCCATTGACCAAAAATATATTTTGTTGATATTAAATTATAAATTTACTTCCTACAATTTTAATTTTGTGTTTATATTTAATAGTTCCTCAAACATTCAAATGTATGTAATAATTACTATATTATTAAGGTTTTAATAAACTTAAATCTGATTTCTACGGTTTTTTAAAATAAACAAAATTATAGTATTGATTTTGTTTAAAAAGACCATTAAACACACAAAACTAAAATTATAAATACATATTTAAGAATTTCCTAAAATTTCTTGTCTGTAGGATTATATTTTCTTTCTTTCGAAGATTTTTGGACAGAGGGATTCAAATTTTCAATATAAATATATAATAATACTTAAAAAGTGAGAAACAATATAAATTGGGTTGATTTTGGCTTAACCATCAATAAAAATGAGTCTCACTGTACAATAATTGGATTGTTTTTAAACACGTTTACTAAACCATTGATTTGATTATCATTTGTTCATGTTTACCTAATTGTTATTATGGTGTAAACTTAATAAATTTCTATTTTATTTTTCATCCATACATTTATTTATCAAATCATTATCCCAACAAACAACTTTCTACAATTTGAATTATTTTACAAAATGTTATCAAACAAATGACATCTCATCTTTCTATTAACATGGTTAAAAATAAATCATCATGAGTTGATTTAGTAATAAGTAGGAAGATATAATCTTAATAATCATATTACAATTACAAGATCGAGCATAATTAAATGAGATCAAAACATAATTAAATATGCATTTTTTTTTAATCCGATGAATTAGGTGACGTAAAATGTAAAATTTTAGTTGTTTAAATATAATAATAACAATAATTTTCCGTATGCAGCCTTCATATTAAATTACCAGAAAGCCCTTACACTTGAGTTCTCCATAGAGGGGTATATTCGTCTTCATCCACAATCAGAAACCCTAGTTATTGTGCCCAAAGTATTTCCTTTCCCCCCCCCCTTCCATTTGTGTTGCCGGCGGCGTGTCTTCAAATTCTACTGAGTTCTCTCCGCCCTCATTCTTTCTCCCTCGTTTAAGGTTCGTATCGACGTGCTTCTTCGATCCATGGATTTTTTGTGATTTTCTTTGTTTGTTCTGTTCCTTATCCATAGCATTGGCAGCACTTCATATTTGTATTCTCTGCGAGAAAGCTGACAAATGATTGCATTTATTCTTCAGTTTTGCTTTTGTTTGCCTTCGGTGATTAGTGTTATTGTCTTTTGGTTGTTGGTTATATGATCTTGTTTCATGATAGACAGATGATTATTGGGATTGAGATTCGAGATATTTTGATTTGCAGTTCTTCGTTTTGTTTATGAGTTGGAAACCTTGAAATGTTATGCAGACATTTTCGTTCTCCCTCCTTCTCTTGGTTCAAAATATAAGTAATTAGAATTGTAACTCGTATATGCTTTCTGAAAGTTGGTTTCTTTAACAAATCTCTAGTTTCATAGAATATTATGCACTGATATACGTAAGTTCTTTGTTTCCCACTAGTTGTTCCTTGAACTTATTATGTTGTTCAAATTTAGAAGTGGAGCTGTATAGTAAAGGAAAAGATTCTTGGATTGAATAAGATTTAAGTTATTGGTGGGTTCGTGCAGGAATGGAATCCCAAATCAAGCATGCTGTTGTGGTCAAAGTAATGGGTAGAACTGGATCTAGAGGTCAAGTGACTCAAGTGAGAGTTAAGTTTCTTGATGATCAAAATCGTTACATTATGAGGAATGTCAAGGGACCAGTGAGGGAAGGTGACATTCTTACTCTGTTGGAGTCTGAGAGGGAAGCTAGAAGATTGCGTTAGATCAAACCCCCACTTCACCAATTTGCAGTTGCTGAATGTTATGTTTATCCCCTTTTTAGTTTTGTCTTCAAAATAGAATGGCTCGTATCATTTTCACCTCTTTTATGTGTGGCTTTAGTGATATTTTGGTTCTAAGCCAGAATACCTGAACTGAATGAGTACTTTAATTGAGTTTTGAAACCATCTATTTCAAAGTTTTGTGGCTGTTTGCCAACTGCTCAATATTTCTTTTGGAATTCTTAGCATTTAGTTGTATGCTTGCTTTCTTGTTTTGAATTGTTTGATGGTGTGATTTGAAGTGATTTTAAATAGGATTTATTTATTTGAGTATTTGTACTGTTGTGTGCTCTCCTAAGGTTGCATTTGCTTTTTTTATTTTTTATATTTATTTTGAGATGAAGAAATATTCTGAAGTTCAGTTGTGGAGTGGTTTACTTGGCTAGTCATAATCACCAAGTCTTCACATTATGATGAAGGAAGAGAATCCAAGGGTAATCTTGTAAAGCCAATAGCAACGAACTTCATTATCCACAATCCATCATCTGTGTTTCCTAATCCAACCATAATTCAATTTTATTAAATGGTTAATAATCAATCTTCCCTATGTAGAAAGTTTGAATTTTTATATATATACTGAGCCATTTTGGGAAGTTTATGGAACTATGAATTGTGAACTATGAAGATCCACAGCCTAAGATGTATTTTTAGTGCAAGTGGGAGGTAATTTGAACGAGGGGGGATTTTTGGTTCTTAGCACATTCAGTTCAAGTAAATTTTTGTTGGCTATGATA

Coding sequence (CDS)

ATGGAATCTCAAATCAAGCATGCTGTTGTGGTCAAAGTAATGGGTAGAACTGGATCTAGAGGTCAAGTGACTCAAGTGAGAGTTAAGTTTCTTGATGATCAAAATCGTTACATTATGAGGAATGTCAAGGGACCAGTGAGGGAAGCCTTCATATTAAATTACCAGAAAGCCCTTACACTTGAGTTCTCCATAGAGGGGTATATTCGTCTTCATCCACAATCAGAAACCCTAGTTATTGTGCCCAAAGTATTTCCTTTCCCCCCCCCCTTCCATTTGTGTTGCCGGCGGCGTGTCTTCAAATTCTACTGA

Protein sequence

MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREAFILNYQKALTLEFSIEGYIRLHPQSETLVIVPKVFPFPPPFHLCCRRRVFKFY
Homology
[Close]
BLAST of Cucsat.G14024 vs. ExPASy Swiss-Prot
Match: P46302 (40S ribosomal protein S28 OS=Zea mays OX=4577 GN=RPS28 PE=3 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 2.9e-16
Identity = 44/52 (84.62%), Postives = 47/52 (90.38%), Query Frame = 0 

Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREAFIL 53
          M++Q+K AVVVKVMGRTGSRGQVTQVRVKFLDDQNR IMRNVKGPV E  IL
Sbjct: 1  MDTQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVCEGDIL 52

[Close]
BLAST of Cucsat.G14024 vs. ExPASy Swiss-Prot
Match: Q9SR73 (40S ribosomal protein S28-1 OS=Arabidopsis thaliana OX=3702 GN=RPS28A PE=3 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 5.0e-16
Identity = 45/52 (86.54%), Postives = 47/52 (90.38%), Query Frame = 0 

Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREAFIL 53
          M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +RYIMRNVKGPVRE  IL
Sbjct: 1  MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF-TDSDRYIMRNVKGPVREGDIL 51

[Close]
BLAST of Cucsat.G14024 vs. ExPASy Swiss-Prot
Match: P34789 (40S ribosomal protein S28-2 OS=Arabidopsis thaliana OX=3702 GN=RPS28C PE=3 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 1.9e-15
Identity = 43/52 (82.69%), Postives = 47/52 (90.38%), Query Frame = 0 

Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREAFIL 53
          M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +R+IMRNVKGPVRE  +L
Sbjct: 1  MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF-TDSDRFIMRNVKGPVREGDVL 51

[Close]
BLAST of Cucsat.G14024 vs. ExPASy Swiss-Prot
Match: Q6PBK3 (40S ribosomal protein S28 OS=Danio rerio OX=7955 GN=rps28 PE=3 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 3.7e-11
Identity = 34/48 (70.83%), Postives = 40/48 (83.33%), Query Frame = 0 

Query: 5  IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREAFIL 53
          IK A V KV+GRTGS+GQ TQVRV+F+DD NR I+RNVKGPVRE  +L
Sbjct: 9  IKLARVTKVLGRTGSQGQCTQVRVEFMDDSNRSIIRNVKGPVREGDVL 56

[Close]
BLAST of Cucsat.G14024 vs. ExPASy Swiss-Prot
Match: Q90YP3 (40S ribosomal protein S28 OS=Ictalurus punctatus OX=7998 GN=rps28 PE=3 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 3.7e-11
Identity = 34/48 (70.83%), Postives = 40/48 (83.33%), Query Frame = 0 

Query: 5  IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREAFIL 53
          IK A V KV+GRTGS+GQ TQVRV+F+DD NR I+RNVKGPVRE  +L
Sbjct: 9  IKLARVTKVLGRTGSQGQCTQVRVEFMDDSNRSIIRNVKGPVREGDVL 56

[Close]
BLAST of Cucsat.G14024 vs. NCBI nr
Match: KAE8124855.1 (hypothetical protein FH972_019702 [Carpinus fangiana])

HSP 1 Score: 99.8 bits (247), Expect = 3.52e-25
Identity = 49/53 (92.45%), Postives = 51/53 (96.23%), Query Frame = 0 

Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREAFILN 53
          MESQ+KHAVVVKVMGRTGSRGQVTQVRVKFLDDQNR+IMRNVKGPVRE  ILN
Sbjct: 1  MESQVKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILN 53

[Close]
BLAST of Cucsat.G14024 vs. NCBI nr
Match: XP_008453374.1 (PREDICTED: 40S ribosomal protein S28-1 [Cucumis melo] >XP_008460765.1 PREDICTED: 40S ribosomal protein S28-1 [Cucumis melo] >XP_011648782.1 40S ribosomal protein S28-1 [Cucumis sativus] >XP_011653430.1 40S ribosomal protein S28-1 [Cucumis sativus] >XP_016901435.1 PREDICTED: 40S ribosomal protein S28-1 [Cucumis melo] >XP_016902595.1 PREDICTED: 40S ribosomal protein S28-1 [Cucumis melo] >XP_022152253.1 40S ribosomal protein S28-1 [Momordica charantia] >XP_022159219.1 40S ribosomal protein S28-1 [Momordica charantia] >XP_022924912.1 40S ribosomal protein S28-1 [Cucurbita moschata] >XP_022931965.1 40S ribosomal protein S28-1 [Cucurbita moschata] >XP_022932895.1 40S ribosomal protein S28-1 [Cucurbita moschata] >XP_022933469.1 40S ribosomal protein S28-1 [Cucurbita moschata] >XP_022966097.1 40S ribosomal protein S28-1 [Cucurbita maxima] >XP_022966510.1 40S ribosomal protein S28-1 [Cucurbita maxima] >XP_022967935.1 40S ribosomal protein S28-1 [Cucurbita maxima] >XP_022967936.1 40S ribosomal protein S28-1 [Cucurbita maxima] >XP_022987319.1 40S ribosomal protein S28-1 [Cucurbita maxima] >XP_023007264.1 40S ribosomal protein S28-1 [Cucurbita maxima] >XP_023516641.1 40S ribosomal protein S28-1 [Cucurbita pepo subsp. pepo] >XP_023529556.1 40S ribosomal protein S28-1 [Cucurbita pepo subsp. pepo] >XP_031744318.1 40S ribosomal protein S28-1 [Cucumis sativus] >XP_038881044.1 40S ribosomal protein S28-1 [Benincasa hispida] >XP_038881063.1 40S ribosomal protein S28-1 [Benincasa hispida] >XP_038898372.1 40S ribosomal protein S28-1 [Benincasa hispida] >KAA0056126.1 40S ribosomal protein S28-1 [Cucumis melo var. makuwa] >KAG7027624.1 40S ribosomal protein S28, partial [Cucurbita argyrosperma subsp. argyrosperma] >KAA0058054.1 40S ribosomal protein S28-1 [Cucumis melo var. makuwa] >KAA0058055.1 40S ribosomal protein S28-1 [Cucumis melo var. makuwa] >TYK02520.1 40S ribosomal protein S28-1 [Cucumis melo var. makuwa])

HSP 1 Score: 99.4 bits (246), Expect = 5.00e-25
Identity = 50/52 (96.15%), Postives = 50/52 (96.15%), Query Frame = 0 

Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREAFIL 52
          MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVRE  IL
Sbjct: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDIL 52

[Close]
BLAST of Cucsat.G14024 vs. NCBI nr
Match: PSS07843.1 (40S ribosomal protein [Actinidia chinensis var. chinensis] >PSS36278.1 40S ribosomal protein [Actinidia chinensis var. chinensis] >GFY80717.1 nucleic acid-binding, OB-fold-like protein [Actinidia rufa] >GFY93581.1 nucleic acid-binding, OB-fold-like protein [Actinidia rufa] >GFY99858.1 nucleic acid-binding, OB-fold-like protein [Actinidia rufa])

HSP 1 Score: 99.0 bits (245), Expect = 7.10e-25
Identity = 49/52 (94.23%), Postives = 50/52 (96.15%), Query Frame = 0 

Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREAFIL 52
          MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVRE  +L
Sbjct: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDVL 52

[Close]
BLAST of Cucsat.G14024 vs. NCBI nr
Match: XP_023517148.1 (40S ribosomal protein S28-1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 98.6 bits (244), Expect = 1.01e-24
Identity = 49/52 (94.23%), Postives = 50/52 (96.15%), Query Frame = 0 

Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREAFIL 52
          MESQIKHAVVVKVMGRTGSRGQVTQVRVKF+DDQNRYIMRNVKGPVRE  IL
Sbjct: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFIDDQNRYIMRNVKGPVREGDIL 52

[Close]
BLAST of Cucsat.G14024 vs. NCBI nr
Match: PSS13767.1 (40S ribosomal protein [Actinidia chinensis var. chinensis] >PSS21103.1 40S ribosomal protein [Actinidia chinensis var. chinensis])

HSP 1 Score: 98.6 bits (244), Expect = 1.01e-24
Identity = 48/52 (92.31%), Postives = 50/52 (96.15%), Query Frame = 0 

Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREAFIL 52
          MESQIKHA+VVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVRE  +L
Sbjct: 1  MESQIKHAIVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDVL 52

[Close]
BLAST of Cucsat.G14024 vs. ExPASy TrEMBL
Match: A0A5N6RR94 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_019702 PE=3 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 1.71e-25
Identity = 49/53 (92.45%), Postives = 51/53 (96.23%), Query Frame = 0 

Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREAFILN 53
          MESQ+KHAVVVKVMGRTGSRGQVTQVRVKFLDDQNR+IMRNVKGPVRE  ILN
Sbjct: 1  MESQVKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILN 53

[Close]
BLAST of Cucsat.G14024 vs. ExPASy TrEMBL
Match: A0A6J1HTG7 (40S ribosomal protein S28-1 OS=Cucurbita maxima OX=3661 GN=LOC111467300 PE=3 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 2.42e-25
Identity = 50/52 (96.15%), Postives = 50/52 (96.15%), Query Frame = 0 

Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREAFIL 52
          MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVRE  IL
Sbjct: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDIL 52

[Close]
BLAST of Cucsat.G14024 vs. ExPASy TrEMBL
Match: A0A0A0LPR2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G021920 PE=3 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 2.42e-25
Identity = 50/52 (96.15%), Postives = 50/52 (96.15%), Query Frame = 0 

Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREAFIL 52
          MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVRE  IL
Sbjct: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDIL 52

[Close]
BLAST of Cucsat.G14024 vs. ExPASy TrEMBL
Match: A0A1S3CD61 (40S ribosomal protein S28-1 OS=Cucumis melo OX=3656 GN=LOC103499526 PE=3 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 2.42e-25
Identity = 50/52 (96.15%), Postives = 50/52 (96.15%), Query Frame = 0 

Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREAFIL 52
          MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVRE  IL
Sbjct: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDIL 52

[Close]
BLAST of Cucsat.G14024 vs. ExPASy TrEMBL
Match: A0A6J1E1S7 (40S ribosomal protein S28-1 OS=Momordica charantia OX=3673 GN=LOC111025637 PE=3 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 2.42e-25
Identity = 50/52 (96.15%), Postives = 50/52 (96.15%), Query Frame = 0 

Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREAFIL 52
          MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVRE  IL
Sbjct: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDIL 52

The following BLAST results are available for this feature:
BLAST of Cucsat.G14024 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P463022.9e-1684.6240S ribosomal protein S28 OS=Zea mays OX=4577 GN=RPS28 PE=3 SV=1[more]
Q9SR735.0e-1686.5440S ribosomal protein S28-1 OS=Arabidopsis thaliana OX=3702 GN=RPS28A PE=3 SV=1[more]
P347891.9e-1582.6940S ribosomal protein S28-2 OS=Arabidopsis thaliana OX=3702 GN=RPS28C PE=3 SV=1[more]
Q6PBK33.7e-1170.8340S ribosomal protein S28 OS=Danio rerio OX=7955 GN=rps28 PE=3 SV=1[more]
Q90YP33.7e-1170.8340S ribosomal protein S28 OS=Ictalurus punctatus OX=7998 GN=rps28 PE=3 SV=1[more]
BLAST of Cucsat.G14024 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8124855.13.52e-2592.45hypothetical protein FH972_019702 [Carpinus fangiana][more]
XP_008453374.15.00e-2596.15PREDICTED: 40S ribosomal protein S28-1 [Cucumis melo] >XP_008460765.1 PREDICTED:... [more]
PSS07843.17.10e-2594.2340S ribosomal protein [Actinidia chinensis var. chinensis] >PSS36278.1 40S ribos... [more]
XP_023517148.11.01e-2494.2340S ribosomal protein S28-1 [Cucurbita pepo subsp. pepo][more]
PSS13767.11.01e-2492.3140S ribosomal protein [Actinidia chinensis var. chinensis] >PSS21103.1 40S ribos... [more]
BLAST of Cucsat.G14024 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5N6RR941.71e-2592.45Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_019702 PE=3 SV=1[more]
A0A6J1HTG72.42e-2596.1540S ribosomal protein S28-1 OS=Cucurbita maxima OX=3661 GN=LOC111467300 PE=3 SV=... [more]
A0A0A0LPR22.42e-2596.15Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G021920 PE=3 SV=1[more]
A0A1S3CD612.42e-2596.1540S ribosomal protein S28-1 OS=Cucumis melo OX=3656 GN=LOC103499526 PE=3 SV=1[more]
A0A6J1E1S72.42e-2596.1540S ribosomal protein S28-1 OS=Momordica charantia OX=3673 GN=LOC111025637 PE=3 ... [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000289Ribosomal protein S28ePFAMPF01200Ribosomal_S28ecoord: 4..51
e-value: 2.4E-20
score: 72.2
IPR000289Ribosomal protein S28ePANTHERPTHR1076940S RIBOSOMAL PROTEIN S28coord: 1..53
IPR000289Ribosomal protein S28eCDDcd04457S1_S28Ecoord: 6..52
e-value: 3.02878E-22
score: 79.9867
NoneNo IPR availableGENE3D2.40.50.140coord: 1..57
e-value: 8.9E-25
score: 88.3
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 2..53

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsat.G14024.T8Cucsat.G14024.T8mRNA
Cucsat.G14024.T7Cucsat.G14024.T7mRNA
Cucsat.G14024.T6Cucsat.G14024.T6mRNA
Cucsat.G14024.T3Cucsat.G14024.T3mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0030490 maturation of SSU-rRNA
biological_process GO:0000028 ribosomal small subunit assembly
biological_process GO:0006412 translation
cellular_component GO:0022627 cytosolic small ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome