Cucsat.G13533 (gene) Cucumber (B10) v3

Overview
NameCucsat.G13533
Typegene
OrganismCucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
DescriptionUnknown protein
Locationctg1838: 8491724 .. 8496400 (+)
RNA-Seq ExpressionCucsat.G13533
SyntenyCucsat.G13533
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AATATGAAATTAAACTTCAAGGTTTCTCTCTTGGTTAGTTCGTTTGGGGGTCGAATATTCGTTTCTTCAGAGGCGCAGATTTTGATCCTTCCGAACAATATTGTAGTTCACTGGAAATGCACGGCCGGCCGCACAAGCCTCAGAAGCCGGAGGAAGAAGGAGCTTCGCCAGTGGAAGCTGGAAAGCTTCGAAATCTACAATCTCAATTGCTAGCAAATCACCACCAAAAGAAGTAGAATATCTGAATTCCTCATTGTTTTTTTCTGTTTAAGTTACGGTTTAGGTTATCTATGATTGAGTTTCGTATTGAATATTGTAGCTATATGATAAGGAAGCTCTAGAAGTCAGCGCTAGTTCACTGGAAATGAATCTGAATCTATTTACGGCTTGGAACAACACTACTTGAAGGAATCTCCATCAGACATAAAGTCGATCAAAGCGATTTTCAACGAGGAACTTAGAGTAGTAAGTGTTTATTTGGCAGCTCTAGATTTGAAGCTCTTATTAACGAGGCCTTTTCTTTTAGTTAATCGGTCTGAAATTTCATTTCATTTATGTGTTTGGTAACTCAACACTATTGTCCATTGTTAATTCTGGCCACTGATTTTGGTTCTGTCGATCCATCTTTTGATAGGCTGAAAGTTTTCTGCGTCAGAACGTCAAGTCGGCGTGTGGTATCATCGAAAATGGATTTTGAACAAGGAGCATTCGTCCACCGATCAGGAGTTGCGAACGCCAGGAATTTTTATGCATGGAACTACAGAACGTACCTGCTTGCATTCTTCCGATTCAGTCCTTCTAGGCTGATAGCCGCAGTTTGCATGTACATTTTAAAGGTAACAGTTAGCGTATTTCTTCTTTGTCCGTTCCTCGGACTTGTGGCAGGCTAACGAGCAGACACGAGGAGAAGAACTGGATGACACAACAGATATGATAGATACAAACTTCAAGAGTTATTCAGTCTTGCATAATCGCAGGTATAACCTTACGCAATCTTGAGTTGGATTTTCTTTTTCTGTAATAGATTTAGTTTTAGTTGTGCTGGCTCATCGTTCTTTACTTATTGTTCATAAACTTCATCTACTGCTGGTGTCTTTTTGAAGAGTAATTCAGACTTGCTCAACACAGATCTCAACCGTTAAGACTTTTGTCTGAGTTCTGTTAGCCATTTGATGAACTTGGTAAGAATAGGATAGTACTTAGTGCTGGTCTTTATTTTATATAAACGTAAGATAATTATGTAAAAGTCACCTCAAGTATTCCATGAGCAATCTCTTTAGGGAAACTAGTATGCGTAAACTTACCTTCATTGAATTATTTAGCCTCTCTTGCTTCTTCTAGTGTTTTCCATTGGAAGCGCTAATTTGAAACATTGTTGCAAGTGAAAATTCATCGATGTGCGTCGTACTCTACCTTCTTTATAGTGCGCTTCTTGCCAAATTACTGAGCAAAAAGGCCAGTGGAAAAGGTGTAGTGTTAGGTGAGGAATATGAACTCGTGCACCAAACTATTTTCACTGATCCGGATGATCGAAGTGGTTGGTTTTATCATCTTTGGCTTCTGGATCAAACGGTGAAAACGCATCTTCATCACCTTGTTTCTTCTTGGCCACCTCGTAGTCTTAATGTAGCATTATCACGAACTGGATGTTTAGATGATCACACTCTCTCTCATTTAGTAGTTTCCTTTCGGATTCAGGAAAATTACTCCTCATTCTTTACTTTGATCAACCTGTTCAAGGAGTCGACTCATCTTCAGTGATTGTTAAATCTAAAGCTAATTTAAGGTGTCACTCATCTTGGATTCTAACTTTTCCTCAAGAAGAACTCAATTCAGAATTTTATTAGGTGAAAGTCAGCATTGGATATTCTCAGAAAATAGCATCTGCAACCAATTTTTATCTTGTGAAACCAACTCATTTTTTTGTCAACGTGGCTGTGAGATTAGGAGAAACACCCATTTAAGATTGTAGTAACGAAGGGATCAAGTGGCAGGATGAAAACTTTACTTGGCTGGACTAATTGGAAGGACGAAAACTTTACTTGGCTGCAAAATTAGTCCTCTAAATTTTCCATTTGGTTATTCCGACAATCCAGCAGCCAGATCATTATATGAACCTACCCGAGATCGTTATGAACCTACCTAAGAATTAAGATGTAATGGATTCAATCTATGATGGCCACCTAGCTAAGAATTAATTTTAAATAGTTACAAATATAACATTTACATTTGTAATAAAATTTAAAATAAATTGTAAATATAGCAAAATCCGGTAAAATTGGAGTTCATAAATCATTTTGCAAATATTAATCTATCTTATAAATCGTAAGAGTTTATCGACATTATAACTATGTCACTAATAAATTTTTGCTGTATTTGCAATTTTTAATAAATGTTGTTATATATTTGATTATTATTAATAAAATTGCTACCTATTATAATTATCCAATTAATTTCTTACAAGTTCCAATGTTATAAGGTCGGAAAAGTTGTTTGGTGAGATTAATCGAAACTCGTGTAAGCTGACTACATATAGATATAAAGAATATATCTATATTATGAAAGCTTCTACCTCGGTACGTGGAGACTATAAGTAATAAAATATCATTTTCTTTGAATGTCTATCATACCAATTGATCACTCTTATTTCTTTCACATATTTTTGAACTGTTTATCAATCCCAATTCCTTCGGAGACATCTGATAAAATTGCAATGTTTATAAATCCCATCATTATCGTTTTAATTTTCTCTGTTCTTGCAGTAAAATTGGAAAGCTCACTCTTGCTAGATTGTTATGGCACATGCTGTAACATCTCCACACGCCAACAAAATGGATGGTCCAACTTGACGAAGTTCTTGACCTTTACCGACCTGATGATGTTGGATCCACCACATGTTCATTACTACAAGGTTCAACACATCTTAGTTTTATTTGCAGAAGGTGATACAGTTTCTTGTTATCAACTATTGAAAAGTTTATACTTCAACACTTGTTTTTTGTTACTTCGTTTCATGTGCATAAAGGAGACTTTTCATATTGAAACTCTCAACCTCCTTTGGCCATGTTTTGATCAGGAAGAGGGAATGACATTCTGGTTTCTTCACATGTTACATTGACTGGTGAGTTTTGTCAAGACGTCGTTGTTCCTACAAAGAGCAGGCATCACCATATATTGACAGTACTACATCCTGTCTAGCCTCAATAATTTATCAATTTCATGTATTGAATCTACACAAAAAGACTACCGCTGGGTGCAAATGCTCGACCTCAACAACAATGAACTTCGATCAATTGAAGGTATACCTTTTGACCTTCCTTTTTAGTGATAGCTGAAGTAGTGCGTTACATCACTTTCTCACCTTATCTGTAATCCTTCACTATATGCCATTAAATCTGTTAAGAGAAAAA

Coding sequence (CDS)

ATGTGCGTCGTACTCTACCTTCTTTATAGTGCGCTTCTTGCCAAATTACTGAGCAAAAAGGCCAGTGGAAAAGGTGTAGTGTTAGGTGAGGAATATGAACTCGTGCACCAAACTATTTTCACTGATCCGGATGATCGAAGTGGTTGGTTTTATCATCTTTGGCTTCTGGATCAAACGGTGAAAACGCATCTTCATCACCTTGTTTCTTCTTGGCCACCTCGTAGTCTTAATGTAGCATTATCACGAACTGGATGTTTAGATGATCACACTCTCTCTCATTTAGTAGTTTCCTTTCGGATTCAGGAAAATTACTCCTCATTCTTTACTTTGATCAACCTGTTCAAGGAGTCGACTCATCTTCAGTGA

Protein sequence

MCVVLYLLYSALLAKLLSKKASGKGVVLGEEYELVHQTIFTDPDDRSGWFYHLWLLDQTVKTHLHHLVSSWPPRSLNVALSRTGCLDDHTLSHLVVSFRIQENYSSFFTLINLFKESTHLQ
Homology
[Close]
BLAST of Cucsat.G13533 vs. NCBI nr
Match: KAE8651400.1 (hypothetical protein Csa_000707 [Cucumis sativus])

HSP 1 Score: 213 bits (542), Expect = 3.04e-68
Identity = 100/101 (99.01%), Postives = 101/101 (100.00%), Query Frame = 0 

Query: 48  AVKLESSLLLDCYGTCCNISTRQQNGWSNLTKFLTFTDLMMLDPPHVHYYKVQHILVLFA 107
           +VKLESSLLLDCYGTCCNISTRQQNGWSNLTKFLTFTDLMMLDPPHVHYYKVQHILVLFA
Sbjct: 47  SVKLESSLLLDCYGTCCNISTRQQNGWSNLTKFLTFTDLMMLDPPHVHYYKVQHILVLFA 106

Query: 108 EGRGNDILVSSHVTLTGEFCQDVVVPTKSRHHHILTVLHPV 148
           EGRGNDILVSSHVTLTGEFCQDVVVPTKSRHHHILTVLHPV
Sbjct: 107 EGRGNDILVSSHVTLTGEFCQDVVVPTKSRHHHILTVLHPV 147

[Close]
BLAST of Cucsat.G13533 vs. NCBI nr
Match: XP_016903570.1 (PREDICTED: uncharacterized protein LOC103503652 [Cucumis melo])

HSP 1 Score: 49.7 bits (117), Expect = 3.46e-04
Identity = 20/21 (95.24%), Postives = 21/21 (100.00%), Query Frame = 0 

Query: 88  MLDPPHVHYYKVQHILVLFAE 108
           MLDPPHVHYY+VQHILVLFAE
Sbjct: 1   MLDPPHVHYYRVQHILVLFAE 21

[Close]
BLAST of Cucsat.G13533 vs. ExPASy TrEMBL
Match: A0A0A0LJQ0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G892200 PE=4 SV=1)

HSP 1 Score: 301 bits (771), Expect = 1.87e-103
Identity = 148/148 (100.00%), Postives = 148/148 (100.00%), Query Frame = 0 

Query: 1   MSIIPIDHSYFFHIFLNCLSIPIPSETSDKIAMFINPIIIVLIFSVLAVKLESSLLLDCY 60
           MSIIPIDHSYFFHIFLNCLSIPIPSETSDKIAMFINPIIIVLIFSVLAVKLESSLLLDCY
Sbjct: 1   MSIIPIDHSYFFHIFLNCLSIPIPSETSDKIAMFINPIIIVLIFSVLAVKLESSLLLDCY 60

Query: 61  GTCCNISTRQQNGWSNLTKFLTFTDLMMLDPPHVHYYKVQHILVLFAEGRGNDILVSSHV 120
           GTCCNISTRQQNGWSNLTKFLTFTDLMMLDPPHVHYYKVQHILVLFAEGRGNDILVSSHV
Sbjct: 61  GTCCNISTRQQNGWSNLTKFLTFTDLMMLDPPHVHYYKVQHILVLFAEGRGNDILVSSHV 120

Query: 121 TLTGEFCQDVVVPTKSRHHHILTVLHPV 148
           TLTGEFCQDVVVPTKSRHHHILTVLHPV
Sbjct: 121 TLTGEFCQDVVVPTKSRHHHILTVLHPV 148

[Close]
BLAST of Cucsat.G13533 vs. ExPASy TrEMBL
Match: A0A1S4E6H3 (uncharacterized protein LOC103503652 OS=Cucumis melo OX=3656 GN=LOC103503652 PE=4 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 1.68e-04
Identity = 20/21 (95.24%), Postives = 21/21 (100.00%), Query Frame = 0 

Query: 88  MLDPPHVHYYKVQHILVLFAE 108
           MLDPPHVHYY+VQHILVLFAE
Sbjct: 1   MLDPPHVHYYRVQHILVLFAE 21

The following BLAST results are available for this feature:
BLAST of Cucsat.G13533 vs.
Match NameE-valueIdentityDescription
BLAST of Cucsat.G13533 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8651400.13.04e-6899.01hypothetical protein Csa_000707 [Cucumis sativus][more]
XP_016903570.13.46e-0495.24PREDICTED: uncharacterized protein LOC103503652 [Cucumis melo][more]
BLAST of Cucsat.G13533 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LJQ01.87e-103100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G892200 PE=4 SV=1[more]
A0A1S4E6H31.68e-0495.24uncharacterized protein LOC103503652 OS=Cucumis melo OX=3656 GN=LOC103503652 PE=... [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.25.40.120Protein prenylyltransferasecoord: 7..89
e-value: 1.3E-11
score: 46.2
NoneNo IPR availablePANTHERPTHR11129PROTEIN FARNESYLTRANSFERASE ALPHA SUBUNIT/RAB GERANYLGERANYL TRANSFERASE ALPHA SUBUNITcoord: 10..93
NoneNo IPR availablePANTHERPTHR11129:SF7SUBFAMILY NOT NAMEDcoord: 10..93
NoneNo IPR availableSUPERFAMILY48439Protein prenylyltransferasecoord: 25..62
IPR002088Protein prenyltransferase, alpha subunitPROSITEPS51147PFTAcoord: 27..61
score: 10.637703

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsat.G13533.T6Cucsat.G13533.T6mRNA
Cucsat.G13533.T5Cucsat.G13533.T5mRNA
Cucsat.G13533.T4Cucsat.G13533.T4mRNA
Cucsat.G13533.T3Cucsat.G13533.T3mRNA
Cucsat.G13533.T2Cucsat.G13533.T2mRNA
Cucsat.G13533.T1Cucsat.G13533.T1mRNA
Cucsat.G13533.T9Cucsat.G13533.T9mRNA
Cucsat.G13533.T8Cucsat.G13533.T8mRNA
Cucsat.G13533.T10Cucsat.G13533.T10mRNA
Cucsat.G13533.T11Cucsat.G13533.T11mRNA
Cucsat.G13533.T14Cucsat.G13533.T14mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0018344 protein geranylgeranylation
biological_process GO:0018342 protein prenylation
cellular_component GO:0005968 Rab-protein geranylgeranyltransferase complex
molecular_function GO:0004663 Rab geranylgeranyltransferase activity
molecular_function GO:0008318 protein prenyltransferase activity