Cucsat.G13434 (gene) Cucumber (B10) v3

Overview


Name	Cucsat.G13434
Type	gene
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	Mitochondrial
Location	ctg1838: 6645805 .. 6648462 (+)
RNA-Seq Expression	Cucsat.G13434
Synteny	Cucsat.G13434

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CATAGTGGTTGAATAAGGAGGATGGTGTATCTAAGGAGCAAGTGGCCCGAAGATGAGAGGTGCGTATCAAATTTAAGGGTAAATAAATAATTTTGCATGGCTTTTCATTCCCCTTTTAAAAAATTGGCCAATTTCACACAGAAAAAGCCCAAACCCCAACAACCTAGGCTTAGTCGTCCTCTTCTCGAAGCGAGCCTCAATCACTGTTGTTTGAAGGTTTAGGCGAAGGGAATAAGCAGCAATGTTGAAGTTCCTATCTAAGGTGAAGATCGAATTCAATGCTCTCGATCCACGCTTAGCGTGTTGTATGGAATTCTTGGCGCAGTGTAATGCTTCCAAGGCGAAGGAATCCAACCCCGCTTGCCAATTGATCGTCAAGCGCCGAACAGACGACCACCCTCCCCAGATCGCCGTCACCTTTGTCAATGGGGTCGAAGAGGTTTTTGACGCTACCTCTACTCCTGCTCAAACAATTAGGAGTATGATTCTTGAAAAGGGTCAACTCCTTGAGACCGAGCAAATGTTCCGAGAAGCGGGGGAAGCTTGGCCAGTTATCATTCCCGATGAGGAGCTCAAACAACCCTTTACCGGTATCAAGGTTCGTGCTTTTCTTCTCCCTTACTGTAAACCTTTTCTGGTCATCTTCTGCCGGAGTTTCATTTTTGTGTACTACCTGTGGCATTTTGTCGAACAATATATGTGCACGAATAGTTATTCGAACTTTCTACTTTTAAAATATATTAATTTTTTTTAAGTTTCGATTTTATTTCGTTGCTCTCGTTTGTGTAATATAGACACTTCATGTGCTTCGTCATTTGCATCTCAAGCTAATTTAAGAATACCCAGTGCTTCTATTTTAGTTAGCAAGAACTATGCTTTTGGCAATTATTTTCTGAACAGCCCGAACATTTGAGAATTCAGTGTTACAGCATGTGTATTGATATCCAGCATGCCCTAAAATTGATCTAAACATATGGACTATTATTTTCTTCGTTTTACTGACTTTTCTATTCCATGGAACAAATCCCTGGTCTTTTAAGTACCTTGAGTTATTCAGTTTATATTTCTTCCCCTTAGACCTCATTTTAGTAGGTTAGCAAATCTCCCTAGGTCGGTCTAGTAGTAAAAAAGAGCTACAATCCATGCAAATAGCAAAGGGGCAGAGAGTATTGGTTCAAGTTATGTTGTTCATCCAACTAAGATTTAACATCCTATACGTTATCTTGACAACTAAATGTAGGTTGTTTTACGAGAGTAGTCGAAGTGATTCTAAGTTGGGTCTAAGATTCAAAGATATCCAACAGTTAATGCTTTTTTTCTCTTTTTTTACTGACAAGGCCATCTGTATCAGATGTTTGTCTAAAAACTCAATTTGTGTTACCAGCTTATTCATAGTTTCAAGAGTTTGTTTGTAGAATGAATTTGCATAATTTACCATTGAACCAAACCAGCACAAGTAAAAGAGAATTGTTACTTAATCTTCTTTCAAGTAGTTTCGTTTTGTCACGTTCTTATTATTTAAGTTATACTCTCATACTGTATCATCTTTCCTTGTGGTGTTGTATGAGACACTAGAACACATAGGTGATATTGCAACTGGCTTGGTGTGTAATAGAAGAGAATCCATGACCCAATAGACGCTCAAGTAACCAGGAAAACTCTTACAAATACATTACTCATTATGAGTATTATTGACGAAATTACTTGAACAGGATCTGTTCTATAGGTTGTACAACTGTCCTTTAGTTTTAATACTTACATTATCGAATACAATATGATGGCCCCTGTCTGCAAAATTTCATTAGGCCATCAAAGAAATTTGATTGATTTTGAAATCCAAGCAAACTGTAGTAGTAAAAAGTTCAAAAATGTTCAATTAGCTGTTTGAGGCTTTAAAAGTAATATCTTAGACTGGTAAGCGTAATATCTTAGACTAGTAAGCGTAATATCTTAGACTGGTAAGCGTAATATCTTAGACTAGTAAGCGTAATATCTTAGACTGGTAAGCGTAATATCTTAGACTAGTAATTAAGAAGTATTTCGTGAGTTTCTCTCTTCATCATGTGTATTTTACGCTGAAGTTTGATTATGTATATGTTTTCAAGCACTTCATGTTCATCTTCTAGTCGTTCTTTGGATTAGTGGCAGAGATTGCTCTTCTGTTGCATTCGAATTTCATGTCATTGTCTCAAGTTCCGCTTGCTTTTTGTTGCAGCCTAGAAAAGCGGAAGACAAGCAGTAACTTTGTCACAGTTGATGAAATTGCGGATAGATTGGAAAGAGGGGTGGCATCTACACTCGTAATCTTAGGCTGTCAAATATAGAATCAGTTTCCATGGTTAGGAACAATAGCGCTGATTCTGAGATGTTTTCTGTTTTAAATTTCGTAGGGATGCTTCGAAATCTTTTCTTAGAATTCCACATCGGGTTCTAGATATGACATGTGGATGCTCTGTTGGTTTTCATAAGCCATTTATTTATGGGAACTCGTTACCAATACATCCGATTCTCGACTTTCTTTTGACTTTTAGTGAAGAAATGTGCAACTAATCTTTAAAAAAGAAACGATCGGATTAAATGAGTTAAATGTTTGTTTGGCTTATTTCGATATCAAATTTATCAACAATTTCGTGACACTTGAAAAATGTCGAATAGAAA

Coding sequence (CDS)

ATGTTGAAGTTCCTATCTAAGGTGAAGATCGAATTCAATGCTCTCGATCCACGCTTAGCGTGTTGTATGGAATTCTTGGCGCAGTGTAATGCTTCCAAGGCGAAGGAATCCAACCCCGCTTGCCAATTGATCGTCAAGCGCCGAACAGACGACCACCCTCCCCAGATCGCCGTCACCTTTGTCAATGGGGTCGAAGAGGTTTTTGACGCTACCTCTACTCCTGCTCAAACAATTAGGAGTATGATTCTTGAAAAGGGTCAACTCCTTGAGACCGAGCAAATGTTCCGAGAAGCGGGGGAAGCTTGGCCAGTTATCATTCCCGATGAGGAGCTCAAACAACCCTTTACCGGTATCAAGCCTAGAAAAGCGGAAGACAAGCAGTAA

Protein sequence

MLKFLSKVKIEFNALDPRLACCMEFLAQCNASKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPAQTIRSMILEKGQLLETEQMFREAGEAWPVIIPDEELKQPFTGIKPRKAEDKQ

Homology

[Close]

BLAST of Cucsat.G13434 vs. NCBI nr
Match: XP_004147839.1 (uncharacterized protein LOC101217531 [Cucumis sativus] >KGN60014.1 hypothetical protein Csa_000787 [Cucumis sativus])

HSP 1 Score: 258 bits (659), Expect = 9.71e-87
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 0


Query: 1   MLKFLSKVKIEFNALDPRLACCMEFLAQCNASKAKESNPACQLIVKRRTDDHPPQIAVTF 60
           MLKFLSKVKIEFNALDPRLACCMEFLAQCNASKAKESNPACQLIVKRRTDDHPPQIAVTF
Sbjct: 1   MLKFLSKVKIEFNALDPRLACCMEFLAQCNASKAKESNPACQLIVKRRTDDHPPQIAVTF 60

Query: 61  VNGVEEVFDATSTPAQTIRSMILEKGQLLETEQMFREAGEAWPVIIPDEELKQPFTGIKP 120
           VNGVEEVFDATSTPAQTIRSMILEKGQLLETEQMFREAGEAWPVIIPDEELKQPFTGIKP
Sbjct: 61  VNGVEEVFDATSTPAQTIRSMILEKGQLLETEQMFREAGEAWPVIIPDEELKQPFTGIKP 120

Query: 121 RKAEDKQ 127
           RKAEDKQ
Sbjct: 121 RKAEDKQ 127

[Close]

BLAST of Cucsat.G13434 vs. NCBI nr
Match: XP_038896893.1 (uncharacterized protein LOC120085105 [Benincasa hispida])

HSP 1 Score: 246 bits (627), Expect = 7.39e-82
Identity = 121/127 (95.28%), Postives = 123/127 (96.85%), Query Frame = 0


Query: 1   MLKFLSKVKIEFNALDPRLACCMEFLAQCNASKAKESNPACQLIVKRRTDDHPPQIAVTF 60
           MLKFLSKVKIEFNALDPRLA CMEFLAQCNA KAKESNPACQLIVKRRTDDHPPQIAVTF
Sbjct: 1   MLKFLSKVKIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTF 60

Query: 61  VNGVEEVFDATSTPAQTIRSMILEKGQLLETEQMFREAGEAWPVIIPDEELKQPFTGIKP 120
           VNGVEEVFDATSTPAQTIR+MILEKGQLLETEQMFREAGE WPVIIPDEELKQP +GIKP
Sbjct: 61  VNGVEEVFDATSTPAQTIRNMILEKGQLLETEQMFREAGETWPVIIPDEELKQPLSGIKP 120

Query: 121 RKAEDKQ 127
           RKAEDKQ
Sbjct: 121 RKAEDKQ 127

[Close]

BLAST of Cucsat.G13434 vs. NCBI nr
Match: XP_008466507.1 (PREDICTED: uncharacterized protein LOC103503897 [Cucumis melo])

HSP 1 Score: 240 bits (612), Expect = 1.39e-79
Identity = 117/125 (93.60%), Postives = 121/125 (96.80%), Query Frame = 0


Query: 1   MLKFLSKVKIEFNALDPRLACCMEFLAQCNASKAKESNPACQLIVKRRTDDHPPQIAVTF 60
           MLKFLSKVKIEFNALDPRLACCMEFLAQCNA+K+KESNPACQLIVKRRTDDHPPQIAVTF
Sbjct: 1   MLKFLSKVKIEFNALDPRLACCMEFLAQCNATKSKESNPACQLIVKRRTDDHPPQIAVTF 60

Query: 61  VNGVEEVFDATSTPAQTIRSMILEKGQLLETEQMFREAGEAWPVIIPDEELKQPFTGIKP 120
           VNGVEEVFDATS  AQTIR+MILEKGQLLETEQMFREAGEAWPVIIP+EELKQP T IKP
Sbjct: 61  VNGVEEVFDATSISAQTIRNMILEKGQLLETEQMFREAGEAWPVIIPEEELKQPLTSIKP 120

Query: 121 RKAED 125
           RKAED
Sbjct: 121 RKAED 125

[Close]

BLAST of Cucsat.G13434 vs. NCBI nr
Match: XP_022974805.1 (uncharacterized protein LOC111473560 isoform X1 [Cucurbita maxima] >XP_022974806.1 uncharacterized protein LOC111473560 isoform X1 [Cucurbita maxima])

HSP 1 Score: 236 bits (603), Expect = 3.38e-78
Identity = 117/127 (92.13%), Postives = 118/127 (92.91%), Query Frame = 0


Query: 1   MLKFLSKVKIEFNALDPRLACCMEFLAQCNASKAKESNPACQLIVKRRTDDHPPQIAVTF 60
           MLKFLSKVKIEFNALDPRL  CMEFLAQCNA KAKESNPACQLIVKRRTDDHPPQI VTF
Sbjct: 1   MLKFLSKVKIEFNALDPRLPSCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQITVTF 60

Query: 61  VNGVEEVFDATSTPAQTIRSMILEKGQLLETEQMFREAGEAWPVIIPDEELKQPFTGIKP 120
           VNGVEEVFDATSTPAQTIR+MILEKGQLLETEQMFREAGE WPVIIPDEEL QP   IKP
Sbjct: 61  VNGVEEVFDATSTPAQTIRNMILEKGQLLETEQMFREAGETWPVIIPDEELNQPAPSIKP 120

Query: 121 RKAEDKQ 127
           RKAEDKQ
Sbjct: 121 RKAEDKQ 127

[Close]

BLAST of Cucsat.G13434 vs. NCBI nr
Match: XP_022139291.1 (uncharacterized protein LOC111010210 [Momordica charantia])

HSP 1 Score: 235 bits (600), Expect = 9.70e-78
Identity = 115/127 (90.55%), Postives = 120/127 (94.49%), Query Frame = 0


Query: 1   MLKFLSKVKIEFNALDPRLACCMEFLAQCNASKAKESNPACQLIVKRRTDDHPPQIAVTF 60
           MLKFLSKVKIEFNALDPRLA CMEFLAQCNA KAKESNPACQLIVKRRTDD PPQIAVTF
Sbjct: 1   MLKFLSKVKIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDQPPQIAVTF 60

Query: 61  VNGVEEVFDATSTPAQTIRSMILEKGQLLETEQMFREAGEAWPVIIPDEELKQPFTGIKP 120
           VNGVEEVFDATSTPAQTIR+MILEKGQLLETEQMFREAGE WP++IP+EEL+QP   IKP
Sbjct: 61  VNGVEEVFDATSTPAQTIRNMILEKGQLLETEQMFREAGETWPIVIPEEELRQPTPSIKP 120

Query: 121 RKAEDKQ 127
           RKAEDKQ
Sbjct: 121 RKAEDKQ 127

[Close]

BLAST of Cucsat.G13434 vs. ExPASy TrEMBL
Match: A0A0A0LGG5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G866470 PE=3 SV=1)

HSP 1 Score: 258 bits (659), Expect = 4.70e-87
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 0


Query: 1   MLKFLSKVKIEFNALDPRLACCMEFLAQCNASKAKESNPACQLIVKRRTDDHPPQIAVTF 60
           MLKFLSKVKIEFNALDPRLACCMEFLAQCNASKAKESNPACQLIVKRRTDDHPPQIAVTF
Sbjct: 1   MLKFLSKVKIEFNALDPRLACCMEFLAQCNASKAKESNPACQLIVKRRTDDHPPQIAVTF 60

Query: 61  VNGVEEVFDATSTPAQTIRSMILEKGQLLETEQMFREAGEAWPVIIPDEELKQPFTGIKP 120
           VNGVEEVFDATSTPAQTIRSMILEKGQLLETEQMFREAGEAWPVIIPDEELKQPFTGIKP
Sbjct: 61  VNGVEEVFDATSTPAQTIRSMILEKGQLLETEQMFREAGEAWPVIIPDEELKQPFTGIKP 120

Query: 121 RKAEDKQ 127
           RKAEDKQ
Sbjct: 121 RKAEDKQ 127

[Close]

BLAST of Cucsat.G13434 vs. ExPASy TrEMBL
Match: A0A1S3CRE8 (uncharacterized protein LOC103503897 OS=Cucumis melo OX=3656 GN=LOC103503897 PE=3 SV=1)

HSP 1 Score: 240 bits (612), Expect = 6.72e-80
Identity = 117/125 (93.60%), Postives = 121/125 (96.80%), Query Frame = 0


Query: 1   MLKFLSKVKIEFNALDPRLACCMEFLAQCNASKAKESNPACQLIVKRRTDDHPPQIAVTF 60
           MLKFLSKVKIEFNALDPRLACCMEFLAQCNA+K+KESNPACQLIVKRRTDDHPPQIAVTF
Sbjct: 1   MLKFLSKVKIEFNALDPRLACCMEFLAQCNATKSKESNPACQLIVKRRTDDHPPQIAVTF 60

Query: 61  VNGVEEVFDATSTPAQTIRSMILEKGQLLETEQMFREAGEAWPVIIPDEELKQPFTGIKP 120
           VNGVEEVFDATS  AQTIR+MILEKGQLLETEQMFREAGEAWPVIIP+EELKQP T IKP
Sbjct: 61  VNGVEEVFDATSISAQTIRNMILEKGQLLETEQMFREAGEAWPVIIPEEELKQPLTSIKP 120

Query: 121 RKAED 125
           RKAED
Sbjct: 121 RKAED 125

[Close]

BLAST of Cucsat.G13434 vs. ExPASy TrEMBL
Match: A0A6J1IEW0 (uncharacterized protein LOC111473560 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111473560 PE=3 SV=1)

HSP 1 Score: 236 bits (603), Expect = 1.64e-78
Identity = 117/127 (92.13%), Postives = 118/127 (92.91%), Query Frame = 0


Query: 1   MLKFLSKVKIEFNALDPRLACCMEFLAQCNASKAKESNPACQLIVKRRTDDHPPQIAVTF 60
           MLKFLSKVKIEFNALDPRL  CMEFLAQCNA KAKESNPACQLIVKRRTDDHPPQI VTF
Sbjct: 1   MLKFLSKVKIEFNALDPRLPSCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQITVTF 60

Query: 61  VNGVEEVFDATSTPAQTIRSMILEKGQLLETEQMFREAGEAWPVIIPDEELKQPFTGIKP 120
           VNGVEEVFDATSTPAQTIR+MILEKGQLLETEQMFREAGE WPVIIPDEEL QP   IKP
Sbjct: 61  VNGVEEVFDATSTPAQTIRNMILEKGQLLETEQMFREAGETWPVIIPDEELNQPAPSIKP 120

Query: 121 RKAEDKQ 127
           RKAEDKQ
Sbjct: 121 RKAEDKQ 127

[Close]

BLAST of Cucsat.G13434 vs. ExPASy TrEMBL
Match: A0A6J1CC86 (uncharacterized protein LOC111010210 OS=Momordica charantia OX=3673 GN=LOC111010210 PE=3 SV=1)

HSP 1 Score: 235 bits (600), Expect = 4.70e-78
Identity = 115/127 (90.55%), Postives = 120/127 (94.49%), Query Frame = 0


Query: 1   MLKFLSKVKIEFNALDPRLACCMEFLAQCNASKAKESNPACQLIVKRRTDDHPPQIAVTF 60
           MLKFLSKVKIEFNALDPRLA CMEFLAQCNA KAKESNPACQLIVKRRTDD PPQIAVTF
Sbjct: 1   MLKFLSKVKIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDQPPQIAVTF 60

Query: 61  VNGVEEVFDATSTPAQTIRSMILEKGQLLETEQMFREAGEAWPVIIPDEELKQPFTGIKP 120
           VNGVEEVFDATSTPAQTIR+MILEKGQLLETEQMFREAGE WP++IP+EEL+QP   IKP
Sbjct: 61  VNGVEEVFDATSTPAQTIRNMILEKGQLLETEQMFREAGETWPIVIPEEELRQPTPSIKP 120

Query: 121 RKAEDKQ 127
           RKAEDKQ
Sbjct: 121 RKAEDKQ 127

[Close]

BLAST of Cucsat.G13434 vs. ExPASy TrEMBL
Match: A0A6J1IZE5 (uncharacterized protein LOC111481279 OS=Cucurbita maxima OX=3661 GN=LOC111481279 PE=3 SV=1)

HSP 1 Score: 235 bits (599), Expect = 6.68e-78
Identity = 117/127 (92.13%), Postives = 118/127 (92.91%), Query Frame = 0


Query: 1   MLKFLSKVKIEFNALDPRLACCMEFLAQCNASKAKESNPACQLIVKRRTDDHPPQIAVTF 60
           MLKFLSKVKIEFNALDPRLA CMEFLAQCNA KAKESNPACQLIVKRRTDDHPPQIAVTF
Sbjct: 1   MLKFLSKVKIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTF 60

Query: 61  VNGVEEVFDATSTPAQTIRSMILEKGQLLETEQMFREAGEAWPVIIPDEELKQPFTGIKP 120
           VNGVEEVFDATSTPAQTIR+ ILEKGQLLETEQMFREAGE WPVIIPDEEL  P   IKP
Sbjct: 61  VNGVEEVFDATSTPAQTIRTRILEKGQLLETEQMFREAGETWPVIIPDEELNHPPPSIKP 120

Query: 121 RKAEDKQ 127
           RKAEDKQ
Sbjct: 121 RKAEDKQ 127

The following BLAST results are available for this feature:

BLAST of Cucsat.G13434 vs.


Match Name	E-value	Identity	Description

BLAST of Cucsat.G13434 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004147839.1	9.71e-87	100.00	uncharacterized protein LOC101217531 [Cucumis sativus] >KGN60014.1 hypothetical ...	[more]
XP_038896893.1	7.39e-82	95.28	uncharacterized protein LOC120085105 [Benincasa hispida]	[more]
XP_008466507.1	1.39e-79	93.60	PREDICTED: uncharacterized protein LOC103503897 [Cucumis melo]	[more]
XP_022974805.1	3.38e-78	92.13	uncharacterized protein LOC111473560 isoform X1 [Cucurbita maxima] >XP_022974806...	[more]
XP_022139291.1	9.70e-78	90.55	uncharacterized protein LOC111010210 [Momordica charantia]	[more]

BLAST of Cucsat.G13434 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LGG5	4.70e-87	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G866470 PE=3 SV=1	[more]
A0A1S3CRE8	6.72e-80	93.60	uncharacterized protein LOC103503897 OS=Cucumis melo OX=3656 GN=LOC103503897 PE=...	[more]
A0A6J1IEW0	1.64e-78	92.13	uncharacterized protein LOC111473560 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1CC86	4.70e-78	90.55	uncharacterized protein LOC111010210 OS=Momordica charantia OX=3673 GN=LOC111010...	[more]
A0A6J1IZE5	6.68e-78	92.13	uncharacterized protein LOC111481279 OS=Cucurbita maxima OX=3661 GN=LOC111481279...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019716	Ribosomal protein L53, mitochondrial	PFAM	PF10780	MRP_L53	coord: 12..63 e-value: 7.1E-12 score: 45.3
None	No IPR available	GENE3D	3.40.30.10	Glutaredoxin	coord: 1..99 e-value: 6.3E-22 score: 79.4
None	No IPR available	PANTHER	PTHR33618	39S RIBOSOMAL PROTEIN L53, MITOCHONDRIAL	coord: 1..126

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsat.G13434.T1	Cucsat.G13434.T1	mRNA
Cucsat.G13434.T2	Cucsat.G13434.T2	mRNA
Cucsat.G13434.T3	Cucsat.G13434.T3	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005762	mitochondrial large ribosomal subunit