Cucsat.G13191 (gene) Cucumber (B10) v3

Overview
NameCucsat.G13191
Typegene
OrganismCucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
DescriptionUnknown protein
Locationctg1838: 1974938 .. 1975928 (+)
RNA-Seq ExpressionCucsat.G13191
SyntenyCucsat.G13191
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GTCTCAGTTTTACTTTCATCTCTTTCCTTAATCAGCCTAGTCACATCTTCATCTTTTTCCTTTTCAAATTGCAAGCATCGCAATTCATATGCATTCCTAGCTTCTTCTAACTCTTGCTTCAATGTTACGATTTTAACTTTGCTTTCATCTCGTTCCTTAATCAACCTAGTCATACCCTCATCATTTTCTGTTTCTAATTGCAAGCAACGCAATTCATATGTCTTCTTAGCTGCTTCCAACTCTTGCTTTAAGGATATAATCTCCACTCTACTTTCATCTCTTTCTTCAATTAACCTAGTCACATCCTCACCTTTTTTTGTTTCCACTTGCAAGCGACGCAATTCATATGTCTTCTTAGCTGCTTCCAACTCTTGCTTCAACATTGCGATCTCGGCTTTGCTCTCATCTCTTTCTTTAATCAACCGACTCATATCCTCCCCTTTTTCTGTGTCCACTTGCAAGCAATGCAATTCATACGTCTTCTTAGCTGTTTCCAGCTCTTGCTTCAACATTGTGATCTCGGCTTTGTTTTCTTCTCTTTCTTCAATCAACCTGCTCACATCCTCCCCCTTTTCTGTTTTTACTTGCAAGCAACGCAATTCATACATCTCTTTAGTTGTTTCCAACTCTTGTTTCAACATTGTGATTTTTTCTCTACTTTCATCTCTTTCTTTAATCAATCTAGCCACATCCTCGCCTATTTCAGTTTTTAATTGCAAACAACGTAATTCATATGTTTTCTTAGCTATTTCTAACTCTTGCTTCAACATTGTAATCTCTACTTTGCTCTCGTCTCTTTCTTTCATCAACTTACTCACATCCTCACCTTTTTCCATTTCCACTTGCAAGCAACGCAATTCGTAAGTCTTCTTAGCAGTTTCCAATTCTTGCTTCAAGAGTACAATCTCTGCTTTGCATTCATCTCTTTCTTTAATCAACCTGCTCATGTCTTCATTTAGAGAATTCTTCTTTTCTTCCGCTTTAGTCTTCT

Coding sequence (CDS)

GTCTCAGTTTTACTTTCATCTCTTTCCTTAATCAGCCTAGTCACATCTTCATCTTTTTCCTTTTCAAATTGCAAGCATCGCAATTCATATGCATTCCTAGCTTCTTCTAACTCTTGCTTCAATGTTACGATTTTAACTTTGCTTTCATCTCGTTCCTTAATCAACCTAGTCATACCCTCATCATTTTCTGTTTCTAATTGCAAGCAACGCAATTCATATGTCTTCTTAGCTGCTTCCAACTCTTGCTTTAAGGATATAATCTCCACTCTACTTTCATCTCTTTCTTCAATTAACCTAGTCACATCCTCACCTTTTTTTGTTTCCACTTGCAAGCGACGCAATTCATATGTCTTCTTAGCTGCTTCCAACTCTTGCTTCAACATTGTGATCTCGGCTTTGTTTTCTTCTCTTTCTTCAATCAACCTGCTCACATCCTCCCCCTTTTCTGTTTTTACTTGCAAGCAACGCAATTCATACATCTCTTTAGTTGTTTCCAACTCTTGTTTCAACATTGTGATTTTTTCTCTACTTTCATCTCTTTCTTTAATCAATCTAGCCACATCCTCGCCTATTTCAGTTTTTAATTGCAAACAACGTAATTCATATGTTTTCTTAGCTATTTCTAACTCTTGCTTCAACATTGTAATCTCTACTTTGCTCTCGTCTCTTTCTTTCATCAACTTACTCACATCCTCACCTTTTTCCATTTCCACTTGCAAGCAACGCAATTCGTAA

Protein sequence

VSVLLSSLSLISLVTSSSFSFSNCKHRNSYAFLASSNSCFNVTILTLLSSRSLINLVIPSSFSVSNCKQRNSYVFLAASNSCFKDIISTLLSSLSSINLVTSSPFFVSTCKRRNSYVFLAASNSCFNIVISALFSSLSSINLLTSSPFSVFTCKQRNSYISLVVSNSCFNIVIFSLLSSLSLINLATSSPISVFNCKQRNSYVFLAISNSCFNIVISTLLSSLSFINLLTSSPFSISTCKQRNS
Homology
[Close]
BLAST of Cucsat.G13191 vs. ExPASy TrEMBL
Match: A0A3B5Q7F6 (Uncharacterized protein OS=Xiphophorus maculatus OX=8083 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 3.71e-06
Identity = 66/219 (30.14%), Postives = 109/219 (49.77%), Query Frame = 0 

Query: 23  NCKHRNSYAFLASSNSCFNVTILTLLSSRSLINLVIPSSFSVSNCKQRNSYVFLAASNSC 82
           +C   + Y+FL+S+ SC  + + + LS+ S   L + S  S ++C Q   Y FL+ + SC
Sbjct: 142 SCPQLHVYSFLSSA-SCPQLPVYSFLSTASCPQLPVLSFLSTASCPQLPVYSFLSTA-SC 201

Query: 83  FKDIISTLLSSLSSINLVTSSPFFVSTCKRRNSYVFLAASNSCFNIVISALFSSLSSINL 142
            +  + + LSS S + L   S    ++C +     FL+ + SC  + + +  S+ S + L
Sbjct: 202 PQLHVYSFLSSASCLQLPVYSFLSTASCPQLPVLSFLSTA-SCLQLPVYSFLSTASCLQL 261

Query: 143 LTSSPFSVFTCKQRNSYISLVVSNSCFNIVIFSLLSSLSLINLATSSPISVFNCKQRNSY 202
              S  S  +C Q   + S + S SC  + ++S LSS S + L   S +S  +C Q   Y
Sbjct: 262 PVYSFLSSASCPQLPVH-SFLSSASCLQLPVYSFLSSASCLQLPVLSFLSTASCLQLPVY 321

Query: 203 VFLAISNSCFNIVISTLLSSLSFINLLTSSPFSISTCKQ 241
            FL+ + SC  + +   LSS+S   L   S  S  +C Q
Sbjct: 322 SFLS-TVSCPQLRLQDFLSSVSCPQLPVYSFLSTVSCPQ 355

[Close]
BLAST of Cucsat.G13191 vs. ExPASy TrEMBL
Match: A0A3B5QY94 (Uncharacterized protein OS=Xiphophorus maculatus OX=8083 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 7.28e-06
Identity = 61/200 (30.50%), Postives = 102/200 (51.00%), Query Frame = 0 

Query: 30  YAFLASSNSCFNVTILTLLSSRSLINLVIPSSFSVSNCKQRNSYVFLAASNSCFKDIIST 89
           Y+FL+++ SC  + + + LSS S + L + S  S ++C Q   Y FL+ S SC +  + +
Sbjct: 352 YSFLSTA-SCLQLPVYSFLSSASCLQLPVYSFLSSASCPQLPVYSFLS-STSCPQLPVHS 411

Query: 90  LLSSLSSINLVTSSPFFVSTCKRRNSYVFLAASNSCFNIVISALFSSLSSINLLTSSPFS 149
            LS+ S   L   S    ++C +   + FL+ + SC  + + +  SS S + L   +  S
Sbjct: 412 FLSTASCPQLPVYSFLSSTSCPQLPVHSFLSTA-SCPQLPVHSFLSSASCLQLSVLNFLS 471

Query: 150 VFTCKQRNSYISLVVSNSCFNIVIFSLLSSLSLINLATSSPISVFNCKQRNSYVFLAISN 209
             +C Q   Y S + + SC  + + S LSS S + L   S +S   C Q   + FL+ S 
Sbjct: 472 TASCPQLPVY-SFLSTASCLQLPVHSFLSSASCLQLPVLSFLSTAFCPQLPVHSFLS-SA 531

Query: 210 SCFNIVISTLLSSLSFINLL 229
           SC  + + + LS+ S + LL
Sbjct: 532 SCLQLPVHSFLSTASSLQLL 546

The following BLAST results are available for this feature:
BLAST of Cucsat.G13191 vs.
Match NameE-valueIdentityDescription
BLAST of Cucsat.G13191 vs.
Match NameE-valueIdentityDescription
BLAST of Cucsat.G13191 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A3B5Q7F63.71e-0630.14Uncharacterized protein OS=Xiphophorus maculatus OX=8083 PE=4 SV=1[more]
A0A3B5QY947.28e-0630.50Uncharacterized protein OS=Xiphophorus maculatus OX=8083 PE=4 SV=1[more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsat.G13191.T1Cucsat.G13191.T1mRNA