Cucsat.G13116 (gene) Cucumber (B10) v3

Overview
NameCucsat.G13116
Typegene
OrganismCucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
DescriptionProtein GL2-INTERACTING REPRESSOR 1
Locationctg1838: 424491 .. 425502 (+)
RNA-Seq ExpressionCucsat.G13116
SyntenyCucsat.G13116
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CCTTAAATTAATTTACACTCTCTGCCACCCATTTCCTCAAAATTCAATTCTCTCTCTCTAAATTAATGATAATAAAAATTAAATAAATAAAAAAAAATCCTTTTTCTTTTGCTTCCCACTTTCCCACCTTCTTTTCCTTATATAAACCATTCCCCGGAGTCCTATGTTTCCCACAAACTCACTTAACATTTTCTCAACTTCCTCCGCCTTCCTCCGCCGCCAATCGCCGCCGTCTGATTTTTTTCAATACTTCAAGGTATATATCCAAATGCATATTGCTAAAGTTTTTTTCAACTTCTGTTTTTTTCTTTCTCCATTGCTCTTTTAAGGAAAATCTATGAATTGGGTTTTCTTTTTTCTTTCCGAAGTTTATAAATTTATATGGTTTTAAAATTTTAAAATTTCCCATAAGTAGATCATTATATGAAAATGGAGAAAACGACATTACAAGATTCAAGTTCTAACTCAACCTCTGTGTTTTTTTCTTTCTAATATTATTATTTAACCTTCTAAAACAGGGGAGGAAATCCCATTTGCTTTTTCCTTCCATTATTCTCATAGAATTTAGCTCAATTTGAGTGTGTTTAATTCTAATTAATTAATCTTTTTTTCTAACTTAGCAGAGGAGGAAAAAAAAAGTAGGAGACAATGAGCAGAAGAAGCAGTGGAAGTGTTCCAAAGCTTGAGTTGAAGTTGAACCTGTCTCCGCCACGACCACATCCATTGGTGTCATCGCCAAGCCGATCAGCGACGGTTTCGCCAACATCGCCGCCGAGTTCTTGCGTGTCGTCGGAGCTAAATCAGGACGACGGTGGGGCGGGTTTACGATATTCAAGTAGCCCGGAAGCAACATCAATGGTGCTGGTGGGGTGCCCTCGTTGCCTAATGTACGTGATGCTGTCGGAGAATGAACCCAAATGCCCAAAATGCAAGAGCTCTGTTTTGCTTGATTTTCTTCATGACGGCGCCGCCTCAGCTCCGCCGTCCACGACAGCCGCCAGGAAGATCTAAGGACAGAGAAAAATTGAAATTACCAAATCTAAACTATCTTAAAATTTCATTAGCCTGTTAAATGTTTTTTTTTTTCTTTTTCTTTTTCTTTTTAGATGTGAAATTGAAAAGAAAAATGTCTAGGTTTTGTTGGGAGAAAGTGGAAGCCTATCTTCTTATATAGCATGGAAGTGGCCATTTTTCTTTTTCTGAAAATAGAGTTGAGAAGATGAATTTATATTAATTTATTTAGATATTGAGCTCATCAATTTAACCTTTCTTTTTTCTTCCTTCCATATGATATTTGATTTACCAAATGCTTTCTTTTCCTTTTCCTTCTCT

Coding sequence (CDS)

ATGAGCAGAAGAAGCAGTGGAAGTGTTCCAAAGCTTGAGTTGAAGTTGAACCTGTCTCCGCCACGACCACATCCATTGGTGTCATCGCCAAGCCGATCAGCGACGGTTTCGCCAACATCGCCGCCGAGTTCTTGCGTGTCGTCGGAGCTAAATCAGGACGACGGTGGGGCGGGTTTACGATATTCAAGTAGCCCGGAAGCAACATCAATGGTGCTGGTGGGGTGCCCTCGTTGCCTAATGTACGTGATGCTGTCGGAGAATGAACCCAAATGCCCAAAATGCAAGAGCTCTGTTTTGCTTGATTTTCTTCATGACGGCGCCGCCTCAGCTCCGCCGTCCACGACAGCCGCCAGGAAGATCTAA

Protein sequence

MSRRSSGSVPKLELKLNLSPPRPHPLVSSPSRSATVSPTSPPSSCVSSELNQDDGGAGLRYSSSPEATSMVLVGCPRCLMYVMLSENEPKCPKCKSSVLLDFLHDGAASAPPSTTAARKI
Homology
BLAST of Cucsat.G13116 vs. ExPASy Swiss-Prot
Match: Q9FNI1 (Protein GL2-INTERACTING REPRESSOR 1 OS=Arabidopsis thaliana OX=3702 GN=GIR1 PE=1 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 1.7e-36
Identity = 85/119 (71.43%), Postives = 96/119 (80.67%), Query Frame = 0

Query: 1   MSRRSSGSVPKLELKLNLSPP--RPHPLVSSPSRSATVSPTSPPSSCVSSELNQDDGGAG 60
           MSRRS    PKLELKLNLSPP      +V SPSRSAT SPTSPPSSCVSSE+NQD+    
Sbjct: 1   MSRRS----PKLELKLNLSPPTSSQRRMVRSPSRSATTSPTSPPSSCVSSEMNQDE--PS 60

Query: 61  LRYSSSPEATSMVLVGCPRCLMYVMLSENEPKCPKCKSSVLLDFLHDGAASAPPSTTAA 118
           +RYS+SPE TSMVLVGCPRCLMYVMLSE++PKCPKCKS+VLLDFLH+ A +A  +  AA
Sbjct: 61  VRYSTSPETTSMVLVGCPRCLMYVMLSEDDPKCPKCKSTVLLDFLHENATNANANAAAA 113

BLAST of Cucsat.G13116 vs. ExPASy Swiss-Prot
Match: Q9SRN4 (Protein GL2-INTERACTING REPRESSOR 2 OS=Arabidopsis thaliana OX=3702 GN=GIR2 PE=1 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 5.8e-24
Identity = 66/116 (56.90%), Postives = 79/116 (68.10%), Query Frame = 0

Query: 1   MSRRSSGSVPKLELKLNLSPPRPHPLVSSPSRSATVSPTSPPSSCVSSELNQDDGGAGLR 60
           MSRR+    PKLEL+LNLSPP       S  RS   S T+ PSSCVSSE NQ++      
Sbjct: 1   MSRRNKNG-PKLELRLNLSPPPSQASQMSLVRSPNRSNTTSPSSCVSSETNQEE------ 60

Query: 61  YSSSPEATSMVLVGCPRCLMYVMLSENEPKCPKCKSSVLLDFLHDGAASAPPSTTA 117
              +   TSMVLVGCPRCLMYVMLS+++PKCPKCKS+VLLDFL + A +A  +T A
Sbjct: 61  ---NETITSMVLVGCPRCLMYVMLSDDDPKCPKCKSTVLLDFLQENAFAATTATAA 106

BLAST of Cucsat.G13116 vs. ExPASy Swiss-Prot
Match: Q9FMS4 (Protein salt-induced and EIN3/EIL1-dependent 1 OS=Arabidopsis thaliana OX=3702 GN=SIED1 PE=1 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 2.1e-10
Identity = 40/93 (43.01%), Postives = 54/93 (58.06%), Query Frame = 0

Query: 12  LELKLNLSPPRPHPLVSSPSRSATVSPTSPPSSCVSSELNQDDGGAGLRYSSSPEATSMV 71
           L+LKLN+SP     L++  S S+  S              + +GG G       EA SMV
Sbjct: 11  LDLKLNISPSLDSSLLTESSSSSLCS-------------EEAEGGGG-------EAKSMV 70

Query: 72  LVGCPRCLMYVMLS-ENEPKCPKCKSSVLLDFL 104
           +VGCP C+MY++ S EN+P+CP+C S VLLDFL
Sbjct: 71  VVGCPNCIMYIITSLENDPRCPRCNSHVLLDFL 83

BLAST of Cucsat.G13116 vs. NCBI nr
Match: XP_031737841.1 (uncharacterized protein LOC101204832 [Cucumis sativus] >KGN59178.1 hypothetical protein Csa_000798 [Cucumis sativus])

HSP 1 Score: 235 bits (599), Expect = 8.20e-78
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0

Query: 1   MSRRSSGSVPKLELKLNLSPPRPHPLVSSPSRSATVSPTSPPSSCVSSELNQDDGGAGLR 60
           MSRRSSGSVPKLELKLNLSPPRPHPLVSSPSRSATVSPTSPPSSCVSSELNQDDGGAGLR
Sbjct: 1   MSRRSSGSVPKLELKLNLSPPRPHPLVSSPSRSATVSPTSPPSSCVSSELNQDDGGAGLR 60

Query: 61  YSSSPEATSMVLVGCPRCLMYVMLSENEPKCPKCKSSVLLDFLHDGAASAPPSTTAARKI 120
           YSSSPEATSMVLVGCPRCLMYVMLSENEPKCPKCKSSVLLDFLHDGAASAPPSTTAARKI
Sbjct: 61  YSSSPEATSMVLVGCPRCLMYVMLSENEPKCPKCKSSVLLDFLHDGAASAPPSTTAARKI 120

BLAST of Cucsat.G13116 vs. NCBI nr
Match: XP_008442891.1 (PREDICTED: uncharacterized protein LOC103486655 [Cucumis melo] >KAA0043838.1 uncharacterized protein E6C27_scaffold236G001730 [Cucumis melo var. makuwa] >TYK04712.1 uncharacterized protein E5676_scaffold23737G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 233 bits (593), Expect = 6.75e-77
Identity = 119/120 (99.17%), Postives = 119/120 (99.17%), Query Frame = 0

Query: 1   MSRRSSGSVPKLELKLNLSPPRPHPLVSSPSRSATVSPTSPPSSCVSSELNQDDGGAGLR 60
           MSRRSSGSVPKLELKLNLSPPRPHPLVSSPSRSATVSPTSPPSSCVSSELNQDDGGA LR
Sbjct: 1   MSRRSSGSVPKLELKLNLSPPRPHPLVSSPSRSATVSPTSPPSSCVSSELNQDDGGAALR 60

Query: 61  YSSSPEATSMVLVGCPRCLMYVMLSENEPKCPKCKSSVLLDFLHDGAASAPPSTTAARKI 120
           YSSSPEATSMVLVGCPRCLMYVMLSENEPKCPKCKSSVLLDFLHDGAASAPPSTTAARKI
Sbjct: 61  YSSSPEATSMVLVGCPRCLMYVMLSENEPKCPKCKSSVLLDFLHDGAASAPPSTTAARKI 120

BLAST of Cucsat.G13116 vs. NCBI nr
Match: XP_038905681.1 (uncharacterized protein LOC120091651 [Benincasa hispida])

HSP 1 Score: 227 bits (578), Expect = 1.31e-74
Identity = 116/120 (96.67%), Postives = 116/120 (96.67%), Query Frame = 0

Query: 1   MSRRSSGSVPKLELKLNLSPPRPHPLVSSPSRSATVSPTSPPSSCVSSELNQDDGGAGLR 60
           MSRRSSGSVPKLELKLNLSPPRPHPL SSPSRSATVSPTSPPSSCVSSELNQDDGGA LR
Sbjct: 1   MSRRSSGSVPKLELKLNLSPPRPHPLASSPSRSATVSPTSPPSSCVSSELNQDDGGASLR 60

Query: 61  YSSSPEATSMVLVGCPRCLMYVMLSENEPKCPKCKSSVLLDFLHDGAASAPPSTTAARKI 120
           YSSSPEATSMVLVGCPRCLMYVMLSENEPKCPKCKSSVLLDFLHDGAASAPPS  AARKI
Sbjct: 61  YSSSPEATSMVLVGCPRCLMYVMLSENEPKCPKCKSSVLLDFLHDGAASAPPSRAAARKI 120

BLAST of Cucsat.G13116 vs. NCBI nr
Match: XP_023528090.1 (early nodulin-20-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 216 bits (549), Expect = 9.94e-70
Identity = 111/120 (92.50%), Postives = 113/120 (94.17%), Query Frame = 0

Query: 1   MSRRSSGSVPKLELKLNLSPPRPHPLVSSPSRSATVSPTSPPSSCVSSELNQDDGGAGLR 60
           MSRRSSGSVPKLELKLNLSPPR HPL SSPSRSAT+SPTSPPSSCVS ELNQDD GA LR
Sbjct: 33  MSRRSSGSVPKLELKLNLSPPRQHPLGSSPSRSATLSPTSPPSSCVSLELNQDDSGAALR 92

Query: 61  YSSSPEATSMVLVGCPRCLMYVMLSENEPKCPKCKSSVLLDFLHDGAASAPPSTTAARKI 120
           YSSSPEATSMVLVGCPRCLMYVMLSENEPKCPKCKSSVLLDFLHDGAAS PPST AARK+
Sbjct: 93  YSSSPEATSMVLVGCPRCLMYVMLSENEPKCPKCKSSVLLDFLHDGAASGPPSTGAARKM 152

BLAST of Cucsat.G13116 vs. NCBI nr
Match: XP_023528091.1 (uncharacterized protein LOC111791110 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 216 bits (549), Expect = 9.94e-70
Identity = 111/120 (92.50%), Postives = 113/120 (94.17%), Query Frame = 0

Query: 1   MSRRSSGSVPKLELKLNLSPPRPHPLVSSPSRSATVSPTSPPSSCVSSELNQDDGGAGLR 60
           MSRRSSGSVPKLELKLNLSPPR HPL SSPSRSAT+SPTSPPSSCVS ELNQDD GA LR
Sbjct: 33  MSRRSSGSVPKLELKLNLSPPRQHPLGSSPSRSATLSPTSPPSSCVSLELNQDDSGAALR 92

Query: 61  YSSSPEATSMVLVGCPRCLMYVMLSENEPKCPKCKSSVLLDFLHDGAASAPPSTTAARKI 120
           YSSSPEATSMVLVGCPRCLMYVMLSENEPKCPKCKSSVLLDFLHDGAAS PPST AARK+
Sbjct: 93  YSSSPEATSMVLVGCPRCLMYVMLSENEPKCPKCKSSVLLDFLHDGAASGPPSTGAARKM 152

BLAST of Cucsat.G13116 vs. ExPASy TrEMBL
Match: A0A0A0LBI1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G778340 PE=4 SV=1)

HSP 1 Score: 235 bits (599), Expect = 3.97e-78
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0

Query: 1   MSRRSSGSVPKLELKLNLSPPRPHPLVSSPSRSATVSPTSPPSSCVSSELNQDDGGAGLR 60
           MSRRSSGSVPKLELKLNLSPPRPHPLVSSPSRSATVSPTSPPSSCVSSELNQDDGGAGLR
Sbjct: 1   MSRRSSGSVPKLELKLNLSPPRPHPLVSSPSRSATVSPTSPPSSCVSSELNQDDGGAGLR 60

Query: 61  YSSSPEATSMVLVGCPRCLMYVMLSENEPKCPKCKSSVLLDFLHDGAASAPPSTTAARKI 120
           YSSSPEATSMVLVGCPRCLMYVMLSENEPKCPKCKSSVLLDFLHDGAASAPPSTTAARKI
Sbjct: 61  YSSSPEATSMVLVGCPRCLMYVMLSENEPKCPKCKSSVLLDFLHDGAASAPPSTTAARKI 120

BLAST of Cucsat.G13116 vs. ExPASy TrEMBL
Match: A0A5A7TLW3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold23737G00010 PE=4 SV=1)

HSP 1 Score: 233 bits (593), Expect = 3.27e-77
Identity = 119/120 (99.17%), Postives = 119/120 (99.17%), Query Frame = 0

Query: 1   MSRRSSGSVPKLELKLNLSPPRPHPLVSSPSRSATVSPTSPPSSCVSSELNQDDGGAGLR 60
           MSRRSSGSVPKLELKLNLSPPRPHPLVSSPSRSATVSPTSPPSSCVSSELNQDDGGA LR
Sbjct: 1   MSRRSSGSVPKLELKLNLSPPRPHPLVSSPSRSATVSPTSPPSSCVSSELNQDDGGAALR 60

Query: 61  YSSSPEATSMVLVGCPRCLMYVMLSENEPKCPKCKSSVLLDFLHDGAASAPPSTTAARKI 120
           YSSSPEATSMVLVGCPRCLMYVMLSENEPKCPKCKSSVLLDFLHDGAASAPPSTTAARKI
Sbjct: 61  YSSSPEATSMVLVGCPRCLMYVMLSENEPKCPKCKSSVLLDFLHDGAASAPPSTTAARKI 120

BLAST of Cucsat.G13116 vs. ExPASy TrEMBL
Match: A0A1S3B7J8 (uncharacterized protein LOC103486655 OS=Cucumis melo OX=3656 GN=LOC103486655 PE=4 SV=1)

HSP 1 Score: 233 bits (593), Expect = 3.27e-77
Identity = 119/120 (99.17%), Postives = 119/120 (99.17%), Query Frame = 0

Query: 1   MSRRSSGSVPKLELKLNLSPPRPHPLVSSPSRSATVSPTSPPSSCVSSELNQDDGGAGLR 60
           MSRRSSGSVPKLELKLNLSPPRPHPLVSSPSRSATVSPTSPPSSCVSSELNQDDGGA LR
Sbjct: 1   MSRRSSGSVPKLELKLNLSPPRPHPLVSSPSRSATVSPTSPPSSCVSSELNQDDGGAALR 60

Query: 61  YSSSPEATSMVLVGCPRCLMYVMLSENEPKCPKCKSSVLLDFLHDGAASAPPSTTAARKI 120
           YSSSPEATSMVLVGCPRCLMYVMLSENEPKCPKCKSSVLLDFLHDGAASAPPSTTAARKI
Sbjct: 61  YSSSPEATSMVLVGCPRCLMYVMLSENEPKCPKCKSSVLLDFLHDGAASAPPSTTAARKI 120

BLAST of Cucsat.G13116 vs. ExPASy TrEMBL
Match: A0A6J1F871 (uncharacterized protein LOC111441745 OS=Cucurbita moschata OX=3662 GN=LOC111441745 PE=4 SV=1)

HSP 1 Score: 214 bits (546), Expect = 4.82e-70
Identity = 110/120 (91.67%), Postives = 112/120 (93.33%), Query Frame = 0

Query: 1   MSRRSSGSVPKLELKLNLSPPRPHPLVSSPSRSATVSPTSPPSSCVSSELNQDDGGAGLR 60
           MSRRSSGSVPKLELKLNLSPPR HPL SSPSRSAT+SPTSPPSSCVS ELNQDD  A LR
Sbjct: 1   MSRRSSGSVPKLELKLNLSPPRQHPLGSSPSRSATLSPTSPPSSCVSLELNQDDSSAALR 60

Query: 61  YSSSPEATSMVLVGCPRCLMYVMLSENEPKCPKCKSSVLLDFLHDGAASAPPSTTAARKI 120
           YSSSPEATSMVLVGCPRCLMYVMLSENEPKCPKCKSSVLLDFLHDGAAS PPST AARK+
Sbjct: 61  YSSSPEATSMVLVGCPRCLMYVMLSENEPKCPKCKSSVLLDFLHDGAASGPPSTAAARKL 120

BLAST of Cucsat.G13116 vs. ExPASy TrEMBL
Match: A0A6J1J6Y2 (uncharacterized protein LOC111481787 OS=Cucurbita maxima OX=3661 GN=LOC111481787 PE=4 SV=1)

HSP 1 Score: 214 bits (545), Expect = 1.96e-69
Identity = 110/120 (91.67%), Postives = 112/120 (93.33%), Query Frame = 0

Query: 1   MSRRSSGSVPKLELKLNLSPPRPHPLVSSPSRSATVSPTSPPSSCVSSELNQDDGGAGLR 60
           MSRRSSGSVPKL+LKLNLSPPR HPL SSPSRSAT+SPTSPPSSCVS ELNQDD  A LR
Sbjct: 33  MSRRSSGSVPKLDLKLNLSPPRQHPLGSSPSRSATLSPTSPPSSCVSLELNQDDSSAALR 92

Query: 61  YSSSPEATSMVLVGCPRCLMYVMLSENEPKCPKCKSSVLLDFLHDGAASAPPSTTAARKI 120
           YSSSPEATSMVLVGCPRCLMYVMLSENEPKCPKCKSSVLLDFLHDGAAS PPST AARKI
Sbjct: 93  YSSSPEATSMVLVGCPRCLMYVMLSENEPKCPKCKSSVLLDFLHDGAASGPPSTAAARKI 152

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q9FNI11.7e-3671.43Protein GL2-INTERACTING REPRESSOR 1 OS=Arabidopsis thaliana OX=3702 GN=GIR1 PE=1... [more]
Q9SRN45.8e-2456.90Protein GL2-INTERACTING REPRESSOR 2 OS=Arabidopsis thaliana OX=3702 GN=GIR2 PE=1... [more]
Q9FMS42.1e-1043.01Protein salt-induced and EIN3/EIL1-dependent 1 OS=Arabidopsis thaliana OX=3702 G... [more]
Match NameE-valueIdentityDescription
XP_031737841.18.20e-78100.00uncharacterized protein LOC101204832 [Cucumis sativus] >KGN59178.1 hypothetical ... [more]
XP_008442891.16.75e-7799.17PREDICTED: uncharacterized protein LOC103486655 [Cucumis melo] >KAA0043838.1 unc... [more]
XP_038905681.11.31e-7496.67uncharacterized protein LOC120091651 [Benincasa hispida][more]
XP_023528090.19.94e-7092.50early nodulin-20-like isoform X1 [Cucurbita pepo subsp. pepo][more]
XP_023528091.19.94e-7092.50uncharacterized protein LOC111791110 isoform X2 [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
A0A0A0LBI13.97e-78100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G778340 PE=4 SV=1[more]
A0A5A7TLW33.27e-7799.17Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3B7J83.27e-7799.17uncharacterized protein LOC103486655 OS=Cucumis melo OX=3656 GN=LOC103486655 PE=... [more]
A0A6J1F8714.82e-7091.67uncharacterized protein LOC111441745 OS=Cucurbita moschata OX=3662 GN=LOC1114417... [more]
A0A6J1J6Y21.96e-6991.67uncharacterized protein LOC111481787 OS=Cucurbita maxima OX=3661 GN=LOC111481787... [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..63
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 28..51
NoneNo IPR availablePANTHERPTHR33177:SF47BNAC02G02040D PROTEINcoord: 3..116
NoneNo IPR availablePANTHERPTHR33177PUTATIVE-RELATEDcoord: 3..116

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsat.G13116.T1Cucsat.G13116.T1mRNA
Cucsat.G13116.T2Cucsat.G13116.T2mRNA