Cucsat.G12949 (gene) Cucumber (B10) v3

Overview


Name	Cucsat.G12949
Type	gene
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	replication protein A 32 kDa subunit A-like
Location	ctg1838: 7659692 .. 7664681 (-)
RNA-Seq Expression	Cucsat.G12949
Synteny	Cucsat.G12949

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTCGCGGGAAATTAGAGCATCAATGGCGGGAAAACGAAAAGCTTCTACTTCCATATGTTCATATTTGCTCCCCAATTCTCTTCCATTTCTCCATTGCTGATTGTTCATCGCGTTATTACTCACAGAGTTTTGAAGAATGTTCTCCAGTACCCAGTTTGATTCCGCCAGCGGATTTACGTCTTCTCAGACCAATGACTCCTCTTCAGCGAAGGTAAGTCGCTGCTTCAACTTCTAAATTTCTGCTTGATCCAGAGAGATTTTTTTTTTTAATTAATGAATAGAATTGGGGTTTAAGGAACCGATACTCCTTATAAAGTCGTTGGATGGCTAGAATCCAGCGAGAGCAAAACTGAAAGCGTAAACCTAAATCGTTTTTAGTTCACCGGAACGATGATCGGAACGGTGTTGAAATTTCAAGAAATGGGGTTTGAATTCATTTTATTTATGTCGGATTAATCTTGAGAGAATCGTGAATAAAATGCTAATTGTCGGATGTTTGTTACATTTTCTTCATATCTTTTTAATTATTCCATGCAGAGTCGAGAATCCCCGGGCTTGATTCCGGTAACTGTGAAACAGATCAGCGAAGCTTCACATTCTGGTGAAGAGAAGGCCAACTTTGTAATCAATGGGGTTGATATTACAAATGTATATTTTCTTGTCTTCTTTCCAACTGTTATGTATTATTTAAAAAAGACGACAAGAAAACGATGTAGAGGGTCTTATGTTAATATTTTTGGGTGGTTTAGTTATTCTTAGATTCTTTATCCCTTCAACCTTAAGAAGCATGGACATTACGTTAGCAGAGTGTTGAATTCTGCAATGCGCAGGGAAGGTTATGGATTTCAGTTTTTTTACATCATATAAATGTTAATTGAAATAAACAGTTGTCAAATCATAGAAATTTTCTACAGCAAACTTGTATAATCAACATGTAACTTTTCCCCTCGTGACAAGCATCGTTTCTTAAAAGGCCATGTTGGTGTACATATTCATGATTGGCTCCTCCAGATTTGATCATCAGCCTGTGTATTTCTATCTAGTTTTTAAGTTCGAGTTTCTCATACTGTACTTGTAAATTCTCTTTTGTTATAAGTACTGACATTTTAGTTATTGGGAAAAGGTTACAATCGTTGGGAAGGTCTCTGAGAAAGCTGAAAGGAATACGGATATCACATTCACGGTAGATGATGGAACAGGAACAATTGGTTGCAAAAGATGGTATACTGTTGCAATTGCAATCTTCCTAAACCTTTTAATCTTCATTCTAGCGTTGTATCTGTTCCGTTTTATTGAAGAACGTGTGTCAAATTTTATTCAGGGTAAACGACACTTTTGACACCAACCAAATGGAGGAAATACAGTAAGTTCTTATCTAGTTTGATTCTCTTGTGATGAAAAATACTTTAGTGGTCTTGATCCTCATGTAGTTTGATTTTTCATGGCACAGAGATGGAATGTACGTTCGGGTGAATGGGCATTTGAAAATGTTCCAAAGCAATAAGCAAATATTTGCATTCTCCGTAAGGTATGGTACTATGATTGTCTTCAATCTATTACAAGCCTTTGGGATCTCTTTTGAAGTTAAATGTTTTACACATAAGGTTATCATTCTGCTCGGTGTTTTATTGCATGTTGAAATTTTAGGATTTACACATCAAGTAAGTTGAAGTAGGTCAATGTTAGCTAAGCACCGTTCTGGAAAGATGCCATATATGTTCTAATTCATTGTTGTAGTAAAACCATCAAATATACAACTACAACCTTGCTTGTATAGGATTGAATGGAATCCGTTCTATTGTGCCAATTCTCAGTTCTTAGATCTATTGCAGCAAATATAGTCTACTGGTTTTGTAAGTAGAACAACCAGGATATGTTACAGTACCCTTGAGTTCTGTGTGATTGTCACGGAGAGAGGTACTCGGTATTGGTACGAAGGAATTAAGGTCCAATAGAAGAAATGGGTAGTGTTGGTGCCGAAAGACCGGTTTTATTCACATTTTACAAACAAGTGAAGGTGACCATTATATTTGTTTCTAATCATAGTGCTCGTAAACTTTCAAACTAAGCATATCAGGATAACAAAATTTGTTTTTGAAATGTTTACATTATGATCTCTACTTTGTTGAAGGTCTCGGGGATGTGTCAGGTGCAGAGAAATATTTTATGCTTTGAAAGTTAATATTTTAAATTCTTAAACTTCTTTCTCAATGAATTTAAGAAATTTTGAGAATAGTATTAACTTCTCACGTTGCCAGTGCATGGGCACTATGAGACGTGTCATTTGTTAGTTTTGACATAGTAGTGGAATTAGATCAATTCCATATCAACCCTCGACTTAAAATCAATTATTAGTGGCTAAATTGTTTAAACTATTTCTAGATTACATGCTTTGAATGATGACATTTACATATGGGATTTAGCAAATTTTCGCCAGTGTTGGTTTAAGAAATGTTATGTTCTCCCTTAAAATTTACAGTTGCTGATTTCCTTTCTGGATTTCCCCAATTAGTAAAATATGAACAAGCAAACCTCTGGGAAACAAATGTCTTGTTAATGCTATATAGTCTCTCTTTGTTAATATGTAATTGCCTAAAACTTCTGCTTGAAACTACAGTCCAAAGGATTGATTTTTTTGTAATTATTTGTGTATTGGAAACCGTCTAATGCCAAATAATCTGTCCCTGTTGTATATTTGATCAACTGACACAATGATTGAATTTGGTTATGCTTTGCCAGGCCTGTTACGAACTTTGATGAAATTACCTTCCACTTTATTGAATGCATACACGACCACTTGCGGAACTCCAAGTTACAGGTACTAGTTCCTGGAGCTGACTTGGTAATTGTGCTTCGAACTTGTAACATTGTTTTTTCTATAGTCTAACGGAATTAATTATTAACAAATATCATAATTCTCAATTCATTTGTCTTAAACTGCTAGAATCTCAAAGGCAATGGATCAACACAGCTCCAAACCTCAGATTCAATTGTGAAGACTCCAGTGCAGAATGGCTCGAATGGATATCATACAACTTCTTCAGCAATAGTAAGTCTTAATTAACCATGATAATTATTGAGAATGTGACAAAAATACCACTCGACTGTAAATAGAAGATTTAGAATATGTAAGTGAGGAATAATATATCATATTGATGTCCTTCGAGTGAAGCTAAAAGTAAAGTAATGTGAGTTGGATCTAAAGTAAACAATATCATATTATTGTAGAGATGTGTGGAGGGTTGTCCTTAACAGTTATGACTGTGCATCTATATCTTATCTGTGATTGCTTGATAGGAATTTAAATCTGATTTCTTTTTGCAGCCATCTGAGCAGCACACTGTTGATGTTAAAAAGAGCTGTGATGAATTGGTTCTTGACTATCTGCAGCTGCCCTCCAGCGTGTAAGTTGTCCCAAACCAAAGTTTGATTTTCCTTTGCAGATTGTTTTGTTTGTTGGCTAATTACTGTGCGTTTTTCCATATGAAACTGACTTAAGCTTGCCGGACACAAGGTGTTTTTACATACAAATAATTGAGCTCTATCATCAGATGTGATTTTGAGTCATTCGTGGTACTTTTTAACTTCTGTGAATAGAAAACAAGACGTGAGGTCGGTGGTTGACTGTTAGTCAGGTCACTTCTGATTATTGGTTCAATAGACACTCACACTGAGTTGACCCTTGGCTCAATAATAAGGGGGGACAAGATATGACTTTAGGTTGCACGTTTCAATTTTCATGTGGGCCACTAAAAAAAAATCCAACTAATTATTGTAGATTAGAAATTTAGTATTGCCCTTGAGATTTATTGTTGCCCAAGTATAGGACAATAATTTCAGATGGATTGTTTCGATGCACGTAAACTGATTGGGACACTTATAGATATAAAAAAAAAAGTATAGAACAATGATTATATGCAATCTGCTTCGTTTTGTTATAGATATAAAAAAAAGAGTATAGAACAGTGATTATATGGAATCCTTCGTTTTGTTACCTAGTAAAAAGTGTATGATATTTGTTAAGTTTTTTTAAGATAAATATAGGTTATGATATGATTTTGGTTTATGAACTTATTTTAATCCCTTTTACTTTCAAATGTATTTAGTTTTTGCACTATCAATGTCTTAAATTATTTGTATTTGATGTTAGTTTTCATCGAAGTTTGTTAATTAAATAGAGTAAACAAGACTAAAATTTTGAGATGACATTTGAGATTTATCTATATACAGACTAAATTTGGATATCTTAGAGTACCTGGACTTAAGGGTTTTTGTACGTATAATTTGGTTCATCTTAAGTGAAGTTATTTTATTTATTTGACAATTAGTATAATGATCAAGAGAGTTAAAAAATTGTTCTATGAAACTAATGTATAAACTACTTATTCTGTACAAGGGGGAAAACGGCTTCTTTTACTTGGAGAAGTTAAATATTCTTTTTCTTTCTTTTCAGTGCAAAAGAAAGAGGAATACACAAAGATGAACTTTCCCAACAACTGAAACTTCCAATGGAGAAAATACTGTATGTTTCCCCTATACCTTCCAACTCCCTTGTGTGGTTAATATGCGAATTAACTTATATTTACTTTTGGTTTGGTTTAGGGATTCCATAAGGTCTCTTGAAGATGAAGGTTTGATATATTCCACCATAGATGAGTTTCATTTCAAGTCTGCTGCATAGAATTAATCATGACTTTATAGTTTTTTCTTTTGGTTGCTATTGCTTTAGGTGTGGTTTAGACAGACATATATATACTGTTTGCTTGAATTGAAGCATATCTCTTTTACTTCCTTGTTCAATGTATATGTATTTGAAGCTTCTTTTTCCTAATTCTAATATTAGATTAAGCCTTAAAGCACCAATCATATCCCAAACGATACTCCAATTTTAACTTTAACTTTGGTGATAGTCGTTTTGTATAAAAAGATATAAGTTGTTGATCAAGATCTCATTTGGTAAAAAAATTAAATCTATTTCCTTTCAGTTTC

Coding sequence (CDS)

ATGTTCTCCAGTACCCAGTTTGATTCCGCCAGCGGATTTACGTCTTCTCAGACCAATGACTCCTCTTCAGCGAAGAGTCGAGAATCCCCGGGCTTGATTCCGGTAACTGTGAAACAGATCAGCGAAGCTTCACATTCTGGTGAAGAGAAGGCCAACTTTGTAATCAATGGGGTTGATATTACAAATGTTACAATCGTTGGGAAGGTCTCTGAGAAAGCTGAAAGGAATACGGATATCACATTCACGGTAGATGATGGAACAGGAACAATTGGTTGCAAAAGATGGGTAAACGACACTTTTGACACCAACCAAATGGAGGAAATACAAGATGGAATGTACGTTCGGGTGAATGGGCATTTGAAAATGTTCCAAAGCAATAAGCAAATATTTGCATTCTCCGTAAGGCCTGTTACGAACTTTGATGAAATTACCTTCCACTTTATTGAATGCATACACGACCACTTGCGGAACTCCAAGTTACAGAATCTCAAAGGCAATGGATCAACACAGCTCCAAACCTCAGATTCAATTGTGAAGACTCCAGTGCAGAATGGCTCGAATGGATATCATACAACTTCTTCAGCAATACCATCTGAGCAGCACACTGTTGATGTTAAAAAGAGCTGTGATGAATTGGTTCTTGACTATCTGCAGCTGCCCTCCAGCGTTGCAAAAGAAAGAGGAATACACAAAGATGAACTTTCCCAACAACTGAAACTTCCAATGGAGAAAATACTGTATGTTTCCCCTATACCTTCCAACTCCCTTGTGTGGTTAATATGCGAATTAACTTATATTTACTTTTGGTTTGGTTTAGGGATTCCATAA

Protein sequence

MFSSTQFDSASGFTSSQTNDSSSAKSRESPGLIPVTVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDTFDTNQMEEIQDGMYVRVNGHLKMFQSNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQNLKGNGSTQLQTSDSIVKTPVQNGSNGYHTTSSAIPSEQHTVDVKKSCDELVLDYLQLPSSVAKERGIHKDELSQQLKLPMEKILYVSPIPSNSLVWLICELTYIYFWFGLGIP

Homology

[Close]

BLAST of Cucsat.G12949 vs. ExPASy Swiss-Prot
Match: Q9ZQ19 (Replication protein A 32 kDa subunit A OS=Arabidopsis thaliana OX=3702 GN=RPA2A PE=1 SV=2)

HSP 1 Score: 220.3 bits (560), Expect = 2.7e-56
Identity = 120/258 (46.51%), Postives = 174/258 (67.44%), Query Frame = 0


Query: 1   MFSSTQFD-----SASGFTSSQ-----TNDSSSAKSRESPGLIPVTVKQISEASHSGEEK 60
           MFSS+QF+     S  GF SSQ      + SS+AK+R+  GL+PVTVKQI+E   S  EK
Sbjct: 1   MFSSSQFEPNSGFSGGGFMSSQPSQAYESSSSTAKNRDFQGLVPVTVKQITECFQSSGEK 60

Query: 61  ANFVINGVDITNVTIVGKVSEKAE-RNTDITFTVDDGTGTIGCKRWVNDTFDTNQMEEIQ 120
           +  VING+ +TNV++VG V +K E + T++ FT+DDGTG I CKRWV++TFD  +ME ++
Sbjct: 61  SGLVINGISLTNVSLVGLVCDKDESKVTEVRFTLDDGTGRIDCKRWVSETFDAREMESVR 120

Query: 121 DGMYVRVNGHLKMFQSNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQNLKGNGST 180
           DG YVR++GHLK FQ   Q+  FSVRP+ +F+E+TFH+IECIH + +NS+ Q  +    T
Sbjct: 121 DGTYVRLSGHLKTFQGKTQLLVFSVRPIMDFNEVTFHYIECIHFYSQNSESQRQQVGDVT 180

Query: 181 QLQTSDSIVKTPVQNGSNGYHTT--SSAIPSEQHTVDVKKSCDELVLDYLQLPSSVAKER 240
           Q       V T  Q GSN    T  +  + S+ +  + +K+ D+++LDYL+ P+  A+++
Sbjct: 181 Q------SVNTTFQGGSNTNQATLLNPVVSSQNNDGNGRKNLDDMILDYLKQPACTARQQ 240

Query: 241 GIHKDELSQQLKLPMEKI 246
           GIH DE++QQLK+P  K+
Sbjct: 241 GIHIDEIAQQLKIPKNKL 252

[Close]

BLAST of Cucsat.G12949 vs. ExPASy Swiss-Prot
Match: Q6K9U2 (Replication protein A 32 kDa subunit A OS=Oryza sativa subsp. japonica OX=39947 GN=RPA2A PE=1 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 1.0e-39
Identity = 103/262 (39.31%), Postives = 148/262 (56.49%), Query Frame = 0


Query: 2   FSSTQFDSASGFTSSQ---TNDSSSAKSRESPGLIPVTVKQISEASHS---GEEKANFVI 61
           FS     S S FTSSQ    + ++ +KSR +   +P+TVKQISEA  S   GE+ A FV+
Sbjct: 4   FSQPDAFSPSQFTSSQNAAADSTTPSKSRGASSTMPLTVKQISEAQQSGITGEKGAPFVV 63

Query: 62  NGVDITNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDTFDTNQMEEIQDGMYVR 121
           +GV+  NV +VG VS K ERNTD++FT+DDGTG +   RWVND  D+ +   +Q+GMYV 
Sbjct: 64  DGVETANVRLVGLVSGKTERNTDVSFTIDDGTGRLDFIRWVNDGADSAETAAVQNGMYVS 123

Query: 122 VNGHLKMFQSNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQ------------NL 181
           V G LK  Q  K+  AF++RPVT+++E+T HFI+C+  HL N+K Q            + 
Sbjct: 124 VIGSLKGLQERKRATAFAIRPVTDYNEVTLHFIQCVRMHLENTKSQIGSPAKTYSAMGSS 183

Query: 182 KGNGSTQLQTSDSIVKTPVQNGSNGYHTTSSAIPSEQHTVDVKKSCDELVLDYLQLPSSV 241
             NG +++ T  S+   P               P    T   K   +  VL+  + P++V
Sbjct: 184 SSNGFSEMTTPTSVKSNPA--------------PVLSVTNGSKTDLNTEVLNVFREPANV 243

Query: 242 AKERGIHKDELSQQLKLPMEKI 246
             E G+H DE+ ++ +LP  KI
Sbjct: 244 ESEHGVHIDEIVKRFRLPEAKI 251

[Close]

BLAST of Cucsat.G12949 vs. ExPASy Swiss-Prot
Match: Q8LFJ8 (Replication protein A 32 kDa subunit B OS=Arabidopsis thaliana OX=3702 GN=RPA2B PE=2 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 1.9e-38
Identity = 94/245 (38.37%), Postives = 147/245 (60.00%), Query Frame = 0


Query: 9   SASGFTSSQT-----NDSSSAKSRESPGLIPVTVKQISEASHSGEEKANFVINGVDITNV 68
           +  GF  SQ        SSS K+R+   L+P+T+KQ+S AS +GE  +NF I+GVDI  V
Sbjct: 13  AGGGFMPSQATTQAHESSSSLKNRDVRTLLPLTLKQLSSASTTGE--SNFSIDGVDIKTV 72

Query: 69  TIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDTFDTNQMEEIQDGMYVRVNGHLKMF 128
            IVG++S    R T + F VDDGTG + C RW +   +T +ME ++ GMYVR++GHLK+F
Sbjct: 73  VIVGRISRMENRITQVDFVVDDGTGWVDCVRWCHARQETEEMEAVKLGMYVRLHGHLKIF 132

Query: 129 QSNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQN---LKGNGSTQLQTSDSIVKT 188
           Q  + +  FSVRPVT+F+EI  HF EC++ H+ N+KL+     +   + + Q   S + T
Sbjct: 133 QGKRSVNVFSVRPVTDFNEIVHHFTECMYVHMYNTKLRGGSITQDTATPRPQMPYSTMPT 192

Query: 189 PVQNGSNGYHTTSSAIPSEQHTVDVKKSCDELVLDYLQLPSSVAKERGIHKDELSQQLKL 246
           P +    G    S+  P++ +  D      + VL+YL  P  +  E G+H D ++++L++
Sbjct: 193 PAKPYQTG---PSNQFPNQFN--DSMHGVKQTVLNYLNQPMHIVSEAGVHCDIIARELRI 250

[Close]

BLAST of Cucsat.G12949 vs. ExPASy Swiss-Prot
Match: Q6H7J5 (Replication protein A 32 kDa subunit B OS=Oryza sativa subsp. japonica OX=39947 GN=RPA2B PE=1 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 3.6e-37
Identity = 85/243 (34.98%), Postives = 144/243 (59.26%), Query Frame = 0


Query: 12  GFTSSQTNDSSSA---------KSRESPGLIPVTVKQISEASHSGEEKANFVINGVDITN 71
           GF  SQ  +++           KSR +  L+P+TVKQI +AS + ++K+NF +NG++++ 
Sbjct: 29  GFMPSQATNAAEGTSGGGGGFPKSRNAQALLPLTVKQIMDASQTNDDKSNFAVNGMEVST 88

Query: 72  VTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDTFDTNQMEEIQDGMYVRVNGHLKM 131
           V +VG++  K +R TD++FT+DDGTG +   RW ND+ DT +M +IQ+G YV VNG LK 
Sbjct: 89  VRLVGRMLNKLDRVTDVSFTLDDGTGRVPVNRWENDSTDTKEMADIQNGDYVIVNGGLKG 148

Query: 132 FQSNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQNLKGNGSTQLQTSDSIVKTPV 191
           FQ  +Q+ A+SVR +TNF+++T HF+ C+H HL  ++ ++ + N +T   T +  +    
Sbjct: 149 FQGKRQVVAYSVRRITNFNDVTHHFLHCVHVHLELTRPKS-QVNANTATGTPNQTMPRDS 208

Query: 192 QNGSNGYHTTSSAIPSEQHTVDVKKSCDELVLDYLQLPSSVAKERGIHKDELSQQLKLPM 246
              +    T  ++  S         +  +LVL+    P+ +  + G+  D +S++L LP 
Sbjct: 209 MAYNQSPLTNQASTFSAPQNTGTGTNMIDLVLNVFHDPAVMNDDHGVGVDYVSRRLNLPE 268

[Close]

BLAST of Cucsat.G12949 vs. ExPASy Swiss-Prot
Match: Q5Z8L1 (Replication protein A 32 kDa subunit C OS=Oryza sativa subsp. japonica OX=39947 GN=RPA2C PE=1 SV=2)

HSP 1 Score: 112.1 bits (279), Expect = 1.0e-23
Identity = 64/160 (40.00%), Postives = 92/160 (57.50%), Query Frame = 0


Query: 9   SASGFTSSQTNDSSSAKSRESPGLIPVTVKQISEA-----SHSGEEKANFVINGVDITNV 68
           SA+G  ++     S  +     G +P TV  IS +     +  G     F I+GV+ TNV
Sbjct: 27  SAAGTGAAAAPSPSKPRDPRFSGCVPATVLHISRSFAAALAADGGGDPVFSIDGVETTNV 86

Query: 69  TIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDTFDTNQMEEIQDGMYVRVNGHLKMF 128
            ++G+V     R+TD+ FT+DD TG I   RW+ D  DT     IQ+G+YV+V  +L  F
Sbjct: 87  RVLGRVVSVVSRDTDVCFTLDDSTGKIPLVRWITDQSDTRDTSYIQEGVYVKVQVNLMGF 146

Query: 129 QSNKQIFAFSVRPVTNFDEITFHFIECIHDHLRN--SKLQ 162
           Q+ KQ  A S+RP+ NF+E+  HFIEC+H HL +  SK+Q
Sbjct: 147 QAKKQGLARSIRPINNFNEVVLHFIECMHVHLESVQSKMQ 186

[Close]

BLAST of Cucsat.G12949 vs. NCBI nr
Match: XP_004136317.1 (replication protein A 32 kDa subunit A [Cucumis sativus] >KGN60158.1 hypothetical protein Csa_001153 [Cucumis sativus])

HSP 1 Score: 480 bits (1235), Expect = 9.75e-170
Identity = 246/246 (100.00%), Postives = 246/246 (100.00%), Query Frame = 0


Query: 1   MFSSTQFDSASGFTSSQTNDSSSAKSRESPGLIPVTVKQISEASHSGEEKANFVINGVDI 60
           MFSSTQFDSASGFTSSQTNDSSSAKSRESPGLIPVTVKQISEASHSGEEKANFVINGVDI
Sbjct: 1   MFSSTQFDSASGFTSSQTNDSSSAKSRESPGLIPVTVKQISEASHSGEEKANFVINGVDI 60

Query: 61  TNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDTFDTNQMEEIQDGMYVRVNGHL 120
           TNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDTFDTNQMEEIQDGMYVRVNGHL
Sbjct: 61  TNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDTFDTNQMEEIQDGMYVRVNGHL 120

Query: 121 KMFQSNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQNLKGNGSTQLQTSDSIVKT 180
           KMFQSNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQNLKGNGSTQLQTSDSIVKT
Sbjct: 121 KMFQSNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQNLKGNGSTQLQTSDSIVKT 180

Query: 181 PVQNGSNGYHTTSSAIPSEQHTVDVKKSCDELVLDYLQLPSSVAKERGIHKDELSQQLKL 240
           PVQNGSNGYHTTSSAIPSEQHTVDVKKSCDELVLDYLQLPSSVAKERGIHKDELSQQLKL
Sbjct: 181 PVQNGSNGYHTTSSAIPSEQHTVDVKKSCDELVLDYLQLPSSVAKERGIHKDELSQQLKL 240

Query: 241 PMEKIL 246
           PMEKIL
Sbjct: 241 PMEKIL 246

[Close]

BLAST of Cucsat.G12949 vs. NCBI nr
Match: XP_008466326.1 (PREDICTED: replication protein A 32 kDa subunit A-like [Cucumis melo])

HSP 1 Score: 466 bits (1200), Expect = 2.10e-164
Identity = 237/246 (96.34%), Postives = 243/246 (98.78%), Query Frame = 0


Query: 1   MFSSTQFDSASGFTSSQTNDSSSAKSRESPGLIPVTVKQISEASHSGEEKANFVINGVDI 60
           MFSSTQFDS SGFTSSQTNDSSSAKSRESPGL+PVTVKQISEASHSGEEKANFVIN VDI
Sbjct: 1   MFSSTQFDSGSGFTSSQTNDSSSAKSRESPGLVPVTVKQISEASHSGEEKANFVINDVDI 60

Query: 61  TNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDTFDTNQMEEIQDGMYVRVNGHL 120
           TNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDTFDT QMEEIQDGMYVRVNGHL
Sbjct: 61  TNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDTFDTKQMEEIQDGMYVRVNGHL 120

Query: 121 KMFQSNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQNLKGNGSTQLQTSDSIVKT 180
           KMFQSNKQIFAFSVRPVTNFDEITFHF+ECIHDHLRNSKLQNLKG+GSTQLQTSDSIVKT
Sbjct: 121 KMFQSNKQIFAFSVRPVTNFDEITFHFLECIHDHLRNSKLQNLKGDGSTQLQTSDSIVKT 180

Query: 181 PVQNGSNGYHTTSSAIPSEQHTVDVKKSCDELVLDYLQLPSSVAKERGIHKDELSQQLKL 240
           PVQNGS+GYHTTSSAIPSEQHTVDVKKSCDELVLDYLQLPSSVAKERGIH+DELSQQLK+
Sbjct: 181 PVQNGSSGYHTTSSAIPSEQHTVDVKKSCDELVLDYLQLPSSVAKERGIHRDELSQQLKI 240

Query: 241 PMEKIL 246
           PMEKIL
Sbjct: 241 PMEKIL 246

[Close]

BLAST of Cucsat.G12949 vs. NCBI nr
Match: XP_038897330.1 (replication protein A 32 kDa subunit A-like [Benincasa hispida])

HSP 1 Score: 449 bits (1155), Expect = 1.50e-157
Identity = 227/246 (92.28%), Postives = 237/246 (96.34%), Query Frame = 0


Query: 1   MFSSTQFDSASGFTSSQTNDSSSAKSRESPGLIPVTVKQISEASHSGEEKANFVINGVDI 60
           MFS TQFDSASGFTSSQTNDSSSAKSRESPGL+PVTVKQISEASHSGEEKANFV+NGVDI
Sbjct: 1   MFSGTQFDSASGFTSSQTNDSSSAKSRESPGLVPVTVKQISEASHSGEEKANFVLNGVDI 60

Query: 61  TNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDTFDTNQMEEIQDGMYVRVNGHL 120
           TNV IVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDTFDT QMEEIQDGMYVRVNGHL
Sbjct: 61  TNVNIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDTFDTKQMEEIQDGMYVRVNGHL 120

Query: 121 KMFQSNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQNLKGNGSTQLQTSDSIVKT 180
           K+FQSNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQNL G+G TQ Q+SDSIVKT
Sbjct: 121 KIFQSNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQNLNGDGPTQFQSSDSIVKT 180

Query: 181 PVQNGSNGYHTTSSAIPSEQHTVDVKKSCDELVLDYLQLPSSVAKERGIHKDELSQQLKL 240
           PVQNGS+G+ T SS IPSEQHTVDVKK+CDELVLDYLQLPSSVAKERGIH+DELSQQLK+
Sbjct: 181 PVQNGSSGHQTASSGIPSEQHTVDVKKNCDELVLDYLQLPSSVAKERGIHRDELSQQLKI 240

Query: 241 PMEKIL 246
           PMEKIL
Sbjct: 241 PMEKIL 246

[Close]

BLAST of Cucsat.G12949 vs. NCBI nr
Match: XP_022936562.1 (replication protein A 32 kDa subunit A-like [Cucurbita moschata])

HSP 1 Score: 437 bits (1124), Expect = 7.92e-153
Identity = 217/246 (88.21%), Postives = 235/246 (95.53%), Query Frame = 0


Query: 1   MFSSTQFDSASGFTSSQTNDSSSAKSRESPGLIPVTVKQISEASHSGEEKANFVINGVDI 60
           MFSS+QFDS SGFTSSQTNDSSSAK+RE+PGL+P TVKQISEASHSGEEKANFVINGVDI
Sbjct: 1   MFSSSQFDSGSGFTSSQTNDSSSAKNRETPGLVPATVKQISEASHSGEEKANFVINGVDI 60

Query: 61  TNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDTFDTNQMEEIQDGMYVRVNGHL 120
           TNVTIVGKVSEKAERNTDITF VDDGTG IGCKRWVNDTFDT QM+EIQDGMY+RVNGHL
Sbjct: 61  TNVTIVGKVSEKAERNTDITFIVDDGTGRIGCKRWVNDTFDTKQMDEIQDGMYIRVNGHL 120

Query: 121 KMFQSNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQNLKGNGSTQLQTSDSIVKT 180
           K+FQSNKQIFAFSVRP+TNFDEITFHFIECIH+HLRNSKLQNL G GSTQ Q+SDSIVKT
Sbjct: 121 KIFQSNKQIFAFSVRPITNFDEITFHFIECIHEHLRNSKLQNLNGVGSTQFQSSDSIVKT 180

Query: 181 PVQNGSNGYHTTSSAIPSEQHTVDVKKSCDELVLDYLQLPSSVAKERGIHKDELSQQLKL 240
           P+QNGS+GY T SS +PSEQHTVDVKK+CD+L+LDYLQLPSSVAKERGIH+DELSQQLK+
Sbjct: 181 PMQNGSSGYQTASSVLPSEQHTVDVKKNCDDLILDYLQLPSSVAKERGIHRDELSQQLKI 240

Query: 241 PMEKIL 246
           PMEKIL
Sbjct: 241 PMEKIL 246

[Close]

BLAST of Cucsat.G12949 vs. NCBI nr
Match: KAG7024504.1 (Replication protein A 32 kDa subunit A [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 432 bits (1112), Expect = 5.32e-151
Identity = 215/246 (87.40%), Postives = 233/246 (94.72%), Query Frame = 0


Query: 1   MFSSTQFDSASGFTSSQTNDSSSAKSRESPGLIPVTVKQISEASHSGEEKANFVINGVDI 60
           MFSS+QFDS SGFTSSQT DSSSAK+RE+PGL+P TVKQISEASHSGEEKANF INGVDI
Sbjct: 1   MFSSSQFDSGSGFTSSQTYDSSSAKNRETPGLVPATVKQISEASHSGEEKANFAINGVDI 60

Query: 61  TNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDTFDTNQMEEIQDGMYVRVNGHL 120
           TNVTIVGKVSEKAERNTDITF VDDGTG IGCKRWVNDTFDT QM+EIQDGMY+RVNGHL
Sbjct: 61  TNVTIVGKVSEKAERNTDITFIVDDGTGRIGCKRWVNDTFDTKQMDEIQDGMYIRVNGHL 120

Query: 121 KMFQSNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQNLKGNGSTQLQTSDSIVKT 180
           K+FQSNKQIFAFSVRP+TNFDEITFHFIECIH+HLRNSKLQNL G GSTQ Q+SDSIVKT
Sbjct: 121 KIFQSNKQIFAFSVRPITNFDEITFHFIECIHEHLRNSKLQNLNGVGSTQFQSSDSIVKT 180

Query: 181 PVQNGSNGYHTTSSAIPSEQHTVDVKKSCDELVLDYLQLPSSVAKERGIHKDELSQQLKL 240
           P+QNGS+GY T SS +PSEQHTVDVKK+CD+L+LDYLQLPSSVAKERGIH+DELSQQLK+
Sbjct: 181 PMQNGSSGYQTASSVLPSEQHTVDVKKNCDDLILDYLQLPSSVAKERGIHRDELSQQLKI 240

Query: 241 PMEKIL 246
           PMEKIL
Sbjct: 241 PMEKIL 246

[Close]

BLAST of Cucsat.G12949 vs. ExPASy TrEMBL
Match: A0A0A0LEG7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G881710 PE=3 SV=1)

HSP 1 Score: 480 bits (1235), Expect = 4.72e-170
Identity = 246/246 (100.00%), Postives = 246/246 (100.00%), Query Frame = 0


Query: 1   MFSSTQFDSASGFTSSQTNDSSSAKSRESPGLIPVTVKQISEASHSGEEKANFVINGVDI 60
           MFSSTQFDSASGFTSSQTNDSSSAKSRESPGLIPVTVKQISEASHSGEEKANFVINGVDI
Sbjct: 1   MFSSTQFDSASGFTSSQTNDSSSAKSRESPGLIPVTVKQISEASHSGEEKANFVINGVDI 60

Query: 61  TNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDTFDTNQMEEIQDGMYVRVNGHL 120
           TNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDTFDTNQMEEIQDGMYVRVNGHL
Sbjct: 61  TNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDTFDTNQMEEIQDGMYVRVNGHL 120

Query: 121 KMFQSNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQNLKGNGSTQLQTSDSIVKT 180
           KMFQSNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQNLKGNGSTQLQTSDSIVKT
Sbjct: 121 KMFQSNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQNLKGNGSTQLQTSDSIVKT 180

Query: 181 PVQNGSNGYHTTSSAIPSEQHTVDVKKSCDELVLDYLQLPSSVAKERGIHKDELSQQLKL 240
           PVQNGSNGYHTTSSAIPSEQHTVDVKKSCDELVLDYLQLPSSVAKERGIHKDELSQQLKL
Sbjct: 181 PVQNGSNGYHTTSSAIPSEQHTVDVKKSCDELVLDYLQLPSSVAKERGIHKDELSQQLKL 240

Query: 241 PMEKIL 246
           PMEKIL
Sbjct: 241 PMEKIL 246

[Close]

BLAST of Cucsat.G12949 vs. ExPASy TrEMBL
Match: A0A1S3CR64 (replication protein A 32 kDa subunit A-like OS=Cucumis melo OX=3656 GN=LOC103503766 PE=3 SV=1)

HSP 1 Score: 466 bits (1200), Expect = 1.02e-164
Identity = 237/246 (96.34%), Postives = 243/246 (98.78%), Query Frame = 0


Query: 1   MFSSTQFDSASGFTSSQTNDSSSAKSRESPGLIPVTVKQISEASHSGEEKANFVINGVDI 60
           MFSSTQFDS SGFTSSQTNDSSSAKSRESPGL+PVTVKQISEASHSGEEKANFVIN VDI
Sbjct: 1   MFSSTQFDSGSGFTSSQTNDSSSAKSRESPGLVPVTVKQISEASHSGEEKANFVINDVDI 60

Query: 61  TNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDTFDTNQMEEIQDGMYVRVNGHL 120
           TNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDTFDT QMEEIQDGMYVRVNGHL
Sbjct: 61  TNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDTFDTKQMEEIQDGMYVRVNGHL 120

Query: 121 KMFQSNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQNLKGNGSTQLQTSDSIVKT 180
           KMFQSNKQIFAFSVRPVTNFDEITFHF+ECIHDHLRNSKLQNLKG+GSTQLQTSDSIVKT
Sbjct: 121 KMFQSNKQIFAFSVRPVTNFDEITFHFLECIHDHLRNSKLQNLKGDGSTQLQTSDSIVKT 180

Query: 181 PVQNGSNGYHTTSSAIPSEQHTVDVKKSCDELVLDYLQLPSSVAKERGIHKDELSQQLKL 240
           PVQNGS+GYHTTSSAIPSEQHTVDVKKSCDELVLDYLQLPSSVAKERGIH+DELSQQLK+
Sbjct: 181 PVQNGSSGYHTTSSAIPSEQHTVDVKKSCDELVLDYLQLPSSVAKERGIHRDELSQQLKI 240

Query: 241 PMEKIL 246
           PMEKIL
Sbjct: 241 PMEKIL 246

[Close]

BLAST of Cucsat.G12949 vs. ExPASy TrEMBL
Match: A0A6J1F8S8 (replication protein A 32 kDa subunit A-like OS=Cucurbita moschata OX=3662 GN=LOC111443128 PE=3 SV=1)

HSP 1 Score: 437 bits (1124), Expect = 3.83e-153
Identity = 217/246 (88.21%), Postives = 235/246 (95.53%), Query Frame = 0


Query: 1   MFSSTQFDSASGFTSSQTNDSSSAKSRESPGLIPVTVKQISEASHSGEEKANFVINGVDI 60
           MFSS+QFDS SGFTSSQTNDSSSAK+RE+PGL+P TVKQISEASHSGEEKANFVINGVDI
Sbjct: 1   MFSSSQFDSGSGFTSSQTNDSSSAKNRETPGLVPATVKQISEASHSGEEKANFVINGVDI 60

Query: 61  TNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDTFDTNQMEEIQDGMYVRVNGHL 120
           TNVTIVGKVSEKAERNTDITF VDDGTG IGCKRWVNDTFDT QM+EIQDGMY+RVNGHL
Sbjct: 61  TNVTIVGKVSEKAERNTDITFIVDDGTGRIGCKRWVNDTFDTKQMDEIQDGMYIRVNGHL 120

Query: 121 KMFQSNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQNLKGNGSTQLQTSDSIVKT 180
           K+FQSNKQIFAFSVRP+TNFDEITFHFIECIH+HLRNSKLQNL G GSTQ Q+SDSIVKT
Sbjct: 121 KIFQSNKQIFAFSVRPITNFDEITFHFIECIHEHLRNSKLQNLNGVGSTQFQSSDSIVKT 180

Query: 181 PVQNGSNGYHTTSSAIPSEQHTVDVKKSCDELVLDYLQLPSSVAKERGIHKDELSQQLKL 240
           P+QNGS+GY T SS +PSEQHTVDVKK+CD+L+LDYLQLPSSVAKERGIH+DELSQQLK+
Sbjct: 181 PMQNGSSGYQTASSVLPSEQHTVDVKKNCDDLILDYLQLPSSVAKERGIHRDELSQQLKI 240

Query: 241 PMEKIL 246
           PMEKIL
Sbjct: 241 PMEKIL 246

[Close]

BLAST of Cucsat.G12949 vs. ExPASy TrEMBL
Match: A0A6J1IMU1 (replication protein A 32 kDa subunit A-like OS=Cucurbita maxima OX=3661 GN=LOC111476648 PE=3 SV=1)

HSP 1 Score: 428 bits (1101), Expect = 1.31e-149
Identity = 215/248 (86.69%), Postives = 233/248 (93.95%), Query Frame = 0


Query: 1   MFSSTQFDSASGFTSSQTNDSSSAKSRESPGLIPVTVKQISEASHSGEEKANFVINGVDI 60
           MFSS+QFDS SGFT SQTNDSSSAK+RE+PGL+P TVKQISEASHSGEEKANF INGVDI
Sbjct: 1   MFSSSQFDSGSGFTFSQTNDSSSAKNRETPGLVPATVKQISEASHSGEEKANFAINGVDI 60

Query: 61  TNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDTFDTNQMEEIQDGMYVRVNGHL 120
           TNVTIVGKVSEKAERNTDITF VDDGTG IGCKRWVNDTFDT QM+EIQDGMY+RVNGHL
Sbjct: 61  TNVTIVGKVSEKAERNTDITFIVDDGTGRIGCKRWVNDTFDTKQMDEIQDGMYIRVNGHL 120

Query: 121 KMFQSNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQNLKGNGSTQLQTSDSIVKT 180
           K+FQSNKQIFAFSVRP+TNFDEITFHFIECIH+HLRNSKLQNL G GSTQ Q+SDSIVKT
Sbjct: 121 KIFQSNKQIFAFSVRPITNFDEITFHFIECIHEHLRNSKLQNLNGVGSTQFQSSDSIVKT 180

Query: 181 PVQNGSNGYHTTSSA--IPSEQHTVDVKKSCDELVLDYLQLPSSVAKERGIHKDELSQQL 240
           P+QNGS+GY T SS   +PSEQHTVDVKK+CD+L+LDYLQLPSSVAKERGIH+DELSQQL
Sbjct: 181 PMQNGSSGYQTASSVSVLPSEQHTVDVKKNCDDLILDYLQLPSSVAKERGIHRDELSQQL 240

Query: 241 KLPMEKIL 246
           K+PMEKIL
Sbjct: 241 KIPMEKIL 248

[Close]

BLAST of Cucsat.G12949 vs. ExPASy TrEMBL
Match: A0A6J1CUB8 (replication protein A 32 kDa subunit A OS=Momordica charantia OX=3673 GN=LOC111014622 PE=3 SV=1)

HSP 1 Score: 391 bits (1005), Expect = 4.84e-135
Identity = 203/246 (82.52%), Postives = 221/246 (89.84%), Query Frame = 0


Query: 1   MFSSTQFDSASGFTSSQTNDSSSAKSRESPGLIPVTVKQISEASHSGEEKANFVINGVDI 60
           MFSS+QFDS SGFTSSQ  DS+SAKSRESPGL+PVTVKQISEA HSGEEKANFVINGVDI
Sbjct: 1   MFSSSQFDSGSGFTSSQVPDSTSAKSRESPGLVPVTVKQISEAFHSGEEKANFVINGVDI 60

Query: 61  TNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDTFDTNQMEEIQDGMYVRVNGHL 120
           TNVTIVGKVSEKAERNTDITF VDDGTG IGCKRWVNDTFDT QM++IQDGMY+RVNGHL
Sbjct: 61  TNVTIVGKVSEKAERNTDITFVVDDGTGRIGCKRWVNDTFDTKQMDDIQDGMYIRVNGHL 120

Query: 121 KMFQSNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQNLKGNGSTQLQTSDSIVKT 180
           K+FQ N QIFAFSVRPVTN DEITFHFIECIHD+LRNSKLQ L G  STQ Q+SDS V  
Sbjct: 121 KIFQGNMQIFAFSVRPVTNCDEITFHFIECIHDYLRNSKLQ-LNGVASTQSQSSDSTVNA 180

Query: 181 PVQNGSNGYHTTSSAIPSEQHTVDVKKSCDELVLDYLQLPSSVAKERGIHKDELSQQLKL 240
            VQ+GS+GY T SS + S QHTVDVKK+ D+LVLDYLQLPSSVAKE+GIH+DELSQQLK+
Sbjct: 181 LVQSGSSGYQTASSELSSGQHTVDVKKNPDDLVLDYLQLPSSVAKEKGIHRDELSQQLKI 240

Query: 241 PMEKIL 246
           P+EKIL
Sbjct: 241 PLEKIL 245

The following BLAST results are available for this feature:

BLAST of Cucsat.G12949 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZQ19	2.7e-56	46.51	Replication protein A 32 kDa subunit A OS=Arabidopsis thaliana OX=3702 GN=RPA2A ...	[more]
Q6K9U2	1.0e-39	39.31	Replication protein A 32 kDa subunit A OS=Oryza sativa subsp. japonica OX=39947 ...	[more]
Q8LFJ8	1.9e-38	38.37	Replication protein A 32 kDa subunit B OS=Arabidopsis thaliana OX=3702 GN=RPA2B ...	[more]
Q6H7J5	3.6e-37	34.98	Replication protein A 32 kDa subunit B OS=Oryza sativa subsp. japonica OX=39947 ...	[more]
Q5Z8L1	1.0e-23	40.00	Replication protein A 32 kDa subunit C OS=Oryza sativa subsp. japonica OX=39947 ...	[more]

BLAST of Cucsat.G12949 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004136317.1	9.75e-170	100.00	replication protein A 32 kDa subunit A [Cucumis sativus] >KGN60158.1 hypothetica...	[more]
XP_008466326.1	2.10e-164	96.34	PREDICTED: replication protein A 32 kDa subunit A-like [Cucumis melo]	[more]
XP_038897330.1	1.50e-157	92.28	replication protein A 32 kDa subunit A-like [Benincasa hispida]	[more]
XP_022936562.1	7.92e-153	88.21	replication protein A 32 kDa subunit A-like [Cucurbita moschata]	[more]
KAG7024504.1	5.32e-151	87.40	Replication protein A 32 kDa subunit A [Cucurbita argyrosperma subsp. argyrosper...	[more]

BLAST of Cucsat.G12949 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LEG7	4.72e-170	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G881710 PE=3 SV=1	[more]
A0A1S3CR64	1.02e-164	96.34	replication protein A 32 kDa subunit A-like OS=Cucumis melo OX=3656 GN=LOC103503...	[more]
A0A6J1F8S8	3.83e-153	88.21	replication protein A 32 kDa subunit A-like OS=Cucurbita moschata OX=3662 GN=LOC...	[more]
A0A6J1IMU1	1.31e-149	86.69	replication protein A 32 kDa subunit A-like OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A6J1CUB8	4.84e-135	82.52	replication protein A 32 kDa subunit A OS=Momordica charantia OX=3673 GN=LOC1110...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 98..167 e-value: 1.6E-16 score: 61.7
IPR014892	Replication protein A, C-terminal	PFAM	PF08784	RPA_C	coord: 50..160 e-value: 2.3E-14 score: 53.9
None	No IPR available	GENE3D	2.40.50.140		coord: 1..57 e-value: 1.5E-15 score: 59.0
None	No IPR available	PANTHER	PTHR13989:SF34	REPLICATION PROTEIN A 32 KDA SUBUNIT A	coord: 1..166
None	No IPR available	CDD	cd04478	RPA2_DBD_D	coord: 1..51 e-value: 9.94601E-23 score: 84.5733
IPR040260	Replication factor A protein-like	PANTHER	PTHR13989	REPLICATION PROTEIN A-RELATED	coord: 1..166
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 2..54
IPR036390	Winged helix DNA-binding domain superfamily	SUPERFAMILY	46785	"Winged helix" DNA-binding domain	coord: 103..166

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsat.G12949.T3	Cucsat.G12949.T3	mRNA
Cucsat.G12949.T2	Cucsat.G12949.T2	mRNA
Cucsat.G12949.T1	Cucsat.G12949.T1	mRNA
Cucsat.G12949.T6	Cucsat.G12949.T6	mRNA
Cucsat.G12949.T5	Cucsat.G12949.T5	mRNA
Cucsat.G12949.T4	Cucsat.G12949.T4	mRNA
Cucsat.G12949.T7	Cucsat.G12949.T7	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006260	DNA replication
biological_process	GO:0000724	double-strand break repair via homologous recombination
biological_process	GO:0006289	nucleotide-excision repair
biological_process	GO:0006310	DNA recombination
biological_process	GO:0006281	DNA repair
cellular_component	GO:0000781	chromosome, telomeric region
cellular_component	GO:0005662	DNA replication factor A complex
cellular_component	GO:0035861	site of double-strand break
cellular_component	GO:0005634	nucleus
molecular_function	GO:0008168	methyltransferase activity
molecular_function	GO:0003697	single-stranded DNA binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003676	nucleic acid binding