Cucsat.G12923 (gene) Cucumber (B10) v3

Overview
NameCucsat.G12923
Typegene
OrganismCucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
DescriptionUbiquitin-like domain-containing protein
Locationctg1838: 7167429 .. 7173444 (-)
RNA-Seq ExpressionCucsat.G12923
SyntenyCucsat.G12923
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TTCTGGGTTTTATTGGCTCAGGTTTGTATGCGTATTATAAGCTCATAGGGAAATAAAATGAATCCTCTAAATGGTAAGTTTAATAGGAGAGATTAGGTGGTTTTTTGTGAGAAGATTTTGCTCTATGAGCAGGTGCTGATTCAATTTTCCCTTTTTAAGCTCTACCATTTATCTTCTACTACTCGTTTTGTTTGACTTCCATGGCAACCACAATTTTTTAGGGTTTAACCAATCTAATTCCCTTAACGGGCCGTTCTTCAACATCAAACCTCTTTTAGTCTTTAACCAATATATTTATTGGTGCCAACAAGGACTCAACGCAACTGACATATGTAAGTACTGAGAACTAAGAAATTCGTAGTTCAATTTTTTCTCCTCAATTTTTACTCGAAACCCCTTTTTGAAGTATTATTATTCACTGTAGTTGACACAAATGCAGCTGAATAAAATGTTAAATTTAGATATTTAGAAATGGAATAGAAATCTGTTTTTTCTTTCAGATTACGGGAGTCACTTTTATTTTTAAATTTTATGAATAGTAATTAAGCATACAACAACATTTTTAAAAAATTACAAATATTGCAAAGACTATGATTTATTGGTATATCAATGATAGACTTTTGACCGATTTTTCTATATTTATACTTTTTTTTTTAAGGTTGTTACTTTATAAAGTATTCTTGAGTGGTTTTGAAAATGACAGAAGGTTTTGAAGTACTTTAAAAATGGTCTTCATCGTTGTTTCTAATTAATCCTACTTATTTTATTTTTTCTCCAAATGATTCTATATGTTCATCAACGTGGAAATAAATGGTTGTTGATGTACAGATTTAAAATTTTACTCTTTGATTTGTCATTTTGTATAAATTTTCATCCTAAAATCTCAATTTCGTCAAATTGAATCTGGACTTTGTGTGTGTGCAAAATTATTCTTAAATAAATTGTGATTCTATCTAAGTTTGTACAAAATGAAGTTTATTTCATGAGTTAATCATCACATTTAATTAAGTGTGGGGTGTAAGTTGATGAAATTGATTTGAAGGTAAAAATGAAAATCGAATTTATCACTACATTTGATTTTGTTTTCCTTTTCAAAGTTGATTGTAGGAAAAATAATTAGTAGGAAGTCTGCACCATATGGTTCTTTCCAAAATTTTGAATAAATGCTCAAATTATAGTAAGATTGTTGTGGATTTACTATTTTAATTATTTTCCCGTTCATAATTAACTCATAATTTATTATATAATATATATTTTATACCTTTTTATTATTTAAATTTGCAACTAATTTTGTTGAATTTGAATTTTTTTAATAACAGTTTAAGAAAACAATTATCATAAAAACATGAATCAATTAAAAATTGATACGTGAAAAATATATTAAATATGAACAAATATTATCTAACTGTTTAAGAAATTGAAAATATATTTGATAAAATATTTATATTTAGTGTAATAAATTTTGGTTTTGTATCATGGAGGTAAATAGTTTGATTTTTTTTTTTTTTTTTTTTTTGTCTATTTTTAAAGTATTCTTATAGTTTAAAGTGTGATTTTTGTTAGATTACTTAAAATTTTGATTTTTACCGAAAACAAAATATTTTCTCAAAGTCCTTTGGTACGATTTTAAGTTAATATTTACAAAATATAAAATACTACCTTTTTTTTTGAAATAATAGACATCTTTAAATGCAGTGTATTTAATAATTTAATAATAATTATTATTATTTTAGTAACTCAGCCTTTTCTCTTTGCCAAACTTTTGATAAGTTAATTATACATTGCTTTTAACTGTTTATTTGATTAGTTAATGCAAATAAACGGAGAAGAGTAGGTGATATGAACGATAGTACATATAAATGAGAGCGATCATTGTATATTATATCAACAATGTAAGAAAATTAAAGAATAAATAATCGAATATTGACAAAATAAACAATCTATTATATTTTCCACAACTCATTCATGGAAAATTTAAAGTATATACAAACAATATAAAAAAGAAGGAAAAAAACTTAAAGAACAAAGAATTGAATATTGACAAAGTATATTGTCTATTATATTATTTTATGACTCGTTCAGGAGAATTTTAAAGTAAAGTATATACTTAGCTTGAAACAAGTGTACGTTGAGTGAACTCTCCTCTCGATTATGGTAACAGAGATATAATGTTGATGCATAGAGACGTCTTCATTTTCATCGATAATTAAAATATTATGTTTGTATGATTTATTAGTAGTCAAAACAAACATTAACTTAAAAATATATAATAGGTGATAAGCAACTAAGAGACGTCTGTTTTGAGTCATCTATTTCTATTAATACTAAAATAATTGTTAGATATATATAAAAGAACATTTTCAAATATAGTAAAAAAATTAAAATTATTGCAAACATGAGCTTAGCTCAACGGACACTTGTATGTTTAAAACTTTAATTAGTCCTTACGGTAGACATGAATATAAAACTTTAATTAGTTATCTTACATCATAAAAATAATAGTAAGATTTAAGGTTAAATTTTGTTATATTAGGAACCAAGTAGAAAGAGTAAATTGTTAGGTTTTGAAGAAGAGTTATTTTACAAGGCTCAGAAAAACAAATGTTAAATAATATATTTTGTTAATTGAGAACAAAATGAAAAGAAGAAAAACGACATCGTTTTAGAAAGGAAAGGCAGTTGAAAGCGGTTGAGAAACAGTTAGCGGTACGTAACATAAGTAACCATGTTGACGATGAGCGTACCAAAAAGAAAAAAGAAAAGAGAAGAAAATGGGGAATTAAATTAGAGCTAAAGGGAACTTTTGATAGCGTTCTCAGGAATTGCCTCCGACACAAGCTCCGAATGCCACTCTTTCTTCAAAAAAGCCAAACCCTAAATCTCTCTCTCTCTCTCTCTCTTCCCCATGCCGTGTTCTTCTTTCCTAAGCATCTCTCCCCCTTTTCCCCTTTTCTTCTTCACATTTTAACCAACCCCCATTATTAGTTTCATTCCTTTTCCGATTCTCCCTCTCATCCTCTACCCATTTCCCATTATTCCATGGCTGTCGACGGCGTTTGTGCACTTGACGTTGTTGACTTTCCTCCCCTCCAGTCAACGACGACGCCCGAGAAACATCGTCGATCCTTCTCCTTGCTTTCATCTCCTTTGATGATTGTTGGCCTCTCCAGGAAGAATGTTTTGTACCGCCAGCTTCCTCATCAGCCTCTCATGCTCTCTGTTCTTAAATTGGACGGCTCTTCTTTCGGTAATTTCTGTTTCTGTGCGTGGCTGTGTTTTTTTTTTTTTTTTTTAATCCACATAATTCGATTAGGGGTAATTTTTGGTAGTTTTTTTATGATGCTGGAGAAATGGAGATTATTCTCTGCTCGTGAGTTTTATTTGGTTTTATTTAGAGCAGAGATATATTGACGGTTTTTGAAATGGGTTTTTATTTGATCCCAGAAAGTGAGAAAACTGATTTCTTAAATTTGAAGAATAAGAATGTCTTTGTTTGCAACCTCTTTTAATATAGGAGGACTTCAATGAATTGAGATGTTTGACACAGATATTCAAGTTAGGAGATCTGCTACTGTTGCTGAATTGAAGGGGGCCGTGGAGTTGGTCTTCAGTCACATGCCACAGCACGGACCGGGAAAGATTTCATGGTTGGTACATTTTATTATTTTACCATTTCATTTTAAGAATGAGATTGATTACTCTTATCTGCTGTTAGATCCTATTCTGATTTTGTTTATTTATCAATGCTGGGCCAAAACTATGGACCATATTTTGATGATATGCTGAAAGCTTGAAGGACATGCTTAATAGAATAGAACTACTTATCTGCTCTAAATTATCAACTTTCCTGGACTTTGTCTACCTTATTCCTCTAACTTAACTAGAAAAATTTAATCTGGATATCTTTTCCCTTTGTCACAAAAGTTTATAGAAGAGTGTTTTTCAATTGAAATGTTTCCTGTTCTTGGTTTGATTCATGCAGGCTCCATGTGTGGTGGCATTTCTGCTTATGCTATGCTGGTCAAAAGTTAGTTGACGATGCTGACTACATTGCAAGTTTTGGCATTAAGGATGGTGATCAGGTACGTAGTTTGTTGTATATAGTAGTAGCTTATGTTGTCTTTGTGACAATTCAAGTTTCTTTAAATGATTAACTGTTTTGTTGCTAGCTTAGACTGGATTCTTGATGCATTATTTGTGAATCTAGTTACAGTCAGGAATGTGTTTCCAGGATGTTAATGAAATATGAAAAGGAAGAGTATAGAATTACACAACTTTAAGCTTATGCTAATTGGATTTCCCTGTTTTAAAATGTTCAGCTTCAATTTGTCCGGCATGTCACAACTGGCTACAATGTTATAAGAAAGCAATCAAAGAAACTTGTGGTTTCCTCAAAACTGATCAGTAGGTAAGTCTCTTACCTCTTAAATAGTGGCCCTTGATGGGAGAAGCTGTATTGACTAAAAAATAGTCAGGGACTTGAGCATTAAAAAGAATTTCAAAAGCTTGAGAGAATAAAAAATGCCCATCCTGAAAGTGGTAAAAGATACTGTTAGTAACTTTGGGTATTGTGTTAATCTAAGAAATCTTAAATAATATAAGATTTTTATAGAAGTTTTCTTGTTATTCAATAAGTCTCTTGAAAGACAATTTGGGCTATTAGATTTTACCACTTGTCCAAGATAAATTAGTGACTATTAGATCTTTAACATCATCCATGGTCAATTTGCAAATATTAGATCCTCCACGTTTTTTAAGGTGAATTTCGAGTCATTGGATTTGTTTGATGGCTAAGTTTCTTTGTGCTATAAATAGGTGGATACATATAGTTGCTAAATCATCCCAAAATATCTAGTTGCTTGTAAGGTTTTCTCTTGTTTCGTTCATTCAATGAACATTTTCTTCTCTAAAAAAGCCATCCCAAAATCCCAAATCAAGTATGTTATTCCTTTATAAGAAATAAAGGTTGTAACTCCTATTTTGTACCGTGCAATTCATCTATTTTTCATGTAATTTTTATCCTAATTTGTTTAGGAGTTATCACTTAAAATCATTGTGTTCTCTCCATTTTTCTTCATTGTTATTCTTAACCTATTTTAGTTGCGATCTTACTCTATTTCGTCACCATTCTTTTCACAACAAGAAATCATATAAGATAGATACCCCTTACTTTAATAATTTATTAATCTAATCAATATACTTTTTTTACATTGCTATCATCTCACGAATCCCTTATTTTGAATTTCCAATATGTTCTGTTTACTATAGAATTCTAACTTCTCAGGATATCATCTCGATCAAAAAACTTCAAGCAAAATGATCAGAAAGATATGGAAAGATACAACTACAACGACATAGAAAGTGGAAGGTGTCAACATAGTGGCAGCAACAACAACGATCTCTTCATGAACCATGAGCCAAAGATGGTAGTGTTTTTAGGAGGATGGTTCTCTCACACCAAGCTAGCATCCGCAGGAAAGATGAGCATCAAGAGTCTGGTACGTCCATCGGTAACTCGCCCTAGCCTGGTGCGTGGTTTCAAGAATTTAATACAATTATGCCGCGAAAAACAACATTATGAAAAAGTGAATAAAAAGAAGAGATCCATCATAGGAGTTTGAGTAGATTAGGAACGATTGAGTTAGTCTATACTCTCTATAATAAATATATGCATTCATCATTCATCCTTCATAATCCTCGATATATAATAAGGTGTTAGACTACCCGAATCCATAATTGTAGTCAGCCGGTGATTATTGTTTTTGTGGTTAATGACAATAATGGTAGGTATAATTAAGAAATCATCCATTGATAATAGAAGAAGCATCATATCAAAATACCTTTACACTAATAATTCTTATAGAGAAATCAACTACTACTACTACTTGTACCTTACGGACATAACTCTGATCTATATAGTAATTTTGTCTTTCTACTTGTCATTTTCAATCCCTCACTTTCATCTATGCCTTTGTTTTCTAGAATTAGTTTTTGATGGCTGCAAATATTCCAAGTA

Coding sequence (CDS)

CTGGGTTTTATTGGCTCAGATATTCAAGTTAGGAGATCTGCTACTGTTGCTGAATTGAAGGGGGCCGTGGAGTTGGTCTTCAGTCACATGCCACAGCACGGACCGGGAAAGATTTCATGGCTCCATGTGTGGTGGCATTTCTGCTTATGCTATGCTGGTCAAAAGTTAGTTGACGATGCTGACTACATTGCAAGTTTTGGCATTAAGGATGGTGATCAGCTTCAATTTGTCCGGCATGTCACAACTGGCTACAATGTTATAAGAAAGCAATCAAAGAAACTTGTGGTTTCCTCAAAACTGATCAGTAGGATATCATCTCGATCAAAAAACTTCAAGCAAAATGATCAGAAAGATATGGAAAGATACAACTACAACGACATAGAAAGTGGAAGGTGTCAACATAGTGGCAGCAACAACAACGATCTCTTCATGAACCATGAGCCAAAGATGGTAGTGTTTTTAGGAGGATGGTTCTCTCACACCAAGCTAGCATCCGCAGGAAAGATGAGCATCAAGAGTCTGGTACGTCCATCGGTAACTCGCCCTAGCCTGGTGCGTGGTTTCAAGAATTTAATACAATTATGCCGCGAAAAACAACATTATGAAAAAGTGAATAAAAAGAAGAGATCCATCATAGGAGTTTGA

Protein sequence

LGFIGSDIQVRRSATVAELKGAVELVFSHMPQHGPGKISWLHVWWHFCLCYAGQKLVDDADYIASFGIKDGDQLQFVRHVTTGYNVIRKQSKKLVVSSKLISRISSRSKNFKQNDQKDMERYNYNDIESGRCQHSGSNNNDLFMNHEPKMVVFLGGWFSHTKLASAGKMSIKSLVRPSVTRPSLVRGFKNLIQLCREKQHYEKVNKKKRSIIGV
Homology
[Close]
BLAST of Cucsat.G12923 vs. ExPASy Swiss-Prot
Match: Q84WS8 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Arabidopsis thaliana OX=3702 GN=SNRNP25 PE=2 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 6.8e-07
Identity = 28/76 (36.84%), Postives = 43/76 (56.58%), Query Frame = 0 

Query: 7   DIQVRRSATVAELKGAVELVFSHMPQHGPG--KISWLHVWWHFCLCYAGQKLVDDADYIA 66
           D+ V  SAT+ +LK  ++   + M Q   G   ISW HVW +FCL    +KL+DD   + 
Sbjct: 65  DVAVMNSATLKDLKLLIKKKVNEMEQANMGHRHISWKHVWSNFCLSCNNEKLLDDNAVLQ 124

Query: 67  SFGIKDGDQLQFVRHV 81
             GI++  Q+ F+ +V
Sbjct: 125 DVGIRNNSQVTFMPYV 140

[Close]
BLAST of Cucsat.G12923 vs. ExPASy Swiss-Prot
Match: Q9BV90 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Homo sapiens OX=9606 GN=SNRNP25 PE=1 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 1.1e-04
Identity = 24/73 (32.88%), Postives = 43/73 (58.90%), Query Frame = 0 

Query: 8   IQVRRSATVAELKGAVE--LVFSHMPQHGPGKISWLHVWWHFCLCYAGQKLVDDADYIAS 67
           + V +SATV +LK A++  +      + G   ISW +VW  + L  AG+KL +D   +  
Sbjct: 55  VVVVQSATVLDLKKAIQRYVQLKQEREGGIQHISWSYVWRTYHLTSAGEKLTEDRKKLRD 114

Query: 68  FGIKDGDQLQFVR 79
           +GI++ D++ F++
Sbjct: 115 YGIRNRDEVSFIK 127

[Close]
BLAST of Cucsat.G12923 vs. ExPASy Swiss-Prot
Match: Q8VIK1 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Mus musculus OX=10090 GN=Snrnp25 PE=1 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 1.8e-04
Identity = 23/73 (31.51%), Postives = 43/73 (58.90%), Query Frame = 0 

Query: 8   IQVRRSATVAELKGAVE--LVFSHMPQHGPGKISWLHVWWHFCLCYAGQKLVDDADYIAS 67
           + V ++ATV +LK A++  +      + G   ISW +VW  + L  AG+KL +D   +  
Sbjct: 46  VVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRD 105

Query: 68  FGIKDGDQLQFVR 79
           +GI++ D++ F++
Sbjct: 106 YGIRNRDEVSFIK 118

[Close]
BLAST of Cucsat.G12923 vs. ExPASy Swiss-Prot
Match: Q3ZBQ4 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Bos taurus OX=9913 GN=SNRNP25 PE=2 SV=2)

HSP 1 Score: 47.0 bits (110), Expect = 3.1e-04
Identity = 23/73 (31.51%), Postives = 43/73 (58.90%), Query Frame = 0 

Query: 8   IQVRRSATVAELKGAVE--LVFSHMPQHGPGKISWLHVWWHFCLCYAGQKLVDDADYIAS 67
           + V ++ATV +LK A++  +      + G   ISW +VW  + L  AG+KL +D   +  
Sbjct: 46  VVVVQNATVLDLKKAIQRYVQLRQEREGGIQHISWSYVWRTYHLTSAGEKLTEDRKKLRD 105

Query: 68  FGIKDGDQLQFVR 79
           +GI++ D++ F++
Sbjct: 106 YGIRNRDEVSFIK 118

[Close]
BLAST of Cucsat.G12923 vs. NCBI nr
Match: XP_004136480.1 (uncharacterized protein LOC101219460 [Cucumis sativus] >KGN60092.1 hypothetical protein Csa_001701 [Cucumis sativus])

HSP 1 Score: 416 bits (1069), Expect = 2.03e-145
Identity = 206/208 (99.04%), Postives = 208/208 (100.00%), Query Frame = 0 

Query: 7   DIQVRRSATVAELKGAVELVFSHMPQHGPGKISWLHVWWHFCLCYAGQKLVDDADYIASF 66
           DIQVRRSATVAELKGAVELVFSHMPQHGPGKISWLHVWWHFCLCYAGQKLVDDADYIASF
Sbjct: 70  DIQVRRSATVAELKGAVELVFSHMPQHGPGKISWLHVWWHFCLCYAGQKLVDDADYIASF 129

Query: 67  GIKDGDQLQFVRHVTTGYNVIRKQSKKLVVSSKLISRISSRSKNFKQNDQKDMERYNYND 126
           GIKDGDQLQFVRHVTTGYNVIRKQSKKLVVSSKLISRISSRSK+FKQNDQKDMERYNYND
Sbjct: 130 GIKDGDQLQFVRHVTTGYNVIRKQSKKLVVSSKLISRISSRSKSFKQNDQKDMERYNYND 189

Query: 127 IESGRCQHSGSNNNDLFMNHEPKMVVFLGGWFSHTKLASAGKMSIKSLVRPSVTRPSLVR 186
           IESGRCQHSGSNNNDLFMNHEPKMVVFLGGWFSHTKLASAGKMSIKSLVRPSVTRPSLVR
Sbjct: 190 IESGRCQHSGSNNNDLFMNHEPKMVVFLGGWFSHTKLASAGKMSIKSLVRPSVTRPSLVR 249

Query: 187 GFKNLIQLCREKQHYEKVNKKKRSIIGV 214
           GFKNLIQLCREK+HYEKVNKKKRSIIGV
Sbjct: 250 GFKNLIQLCREKRHYEKVNKKKRSIIGV 277

[Close]
BLAST of Cucsat.G12923 vs. NCBI nr
Match: KAA0038816.1 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 376 bits (965), Expect = 1.35e-129
Identity = 193/210 (91.90%), Postives = 200/210 (95.24%), Query Frame = 0 

Query: 7   DIQVRRSATVAELKGAVELVFSHMPQHGPGKISWLHVWWHFCLCYAGQKLVDDADYIASF 66
           DIQVRRSATVAELKGAVELVFSHMPQ+GPGKISWLHVWWHFCLCY GQKL+DDADYIASF
Sbjct: 70  DIQVRRSATVAELKGAVELVFSHMPQNGPGKISWLHVWWHFCLCYDGQKLIDDADYIASF 129

Query: 67  GIKDGDQLQFVRHVTTGYNVIRKQSKKLVVSSKLISRISSRSKNFKQNDQKDMERYNY-- 126
           GIKDGDQLQFVRHVTTGYNVIRKQSKK  VSSKLISRISSRSK+FKQNDQKDMERYNY  
Sbjct: 130 GIKDGDQLQFVRHVTTGYNVIRKQSKKREVSSKLISRISSRSKSFKQNDQKDMERYNYKY 189

Query: 127 NDIESGRCQHSGSNNNDLFMNHEPKMVVFLGGWFSHTKLASAGKMSIKSLVRPSVTRPSL 186
           NDIESGRCQH+G  NNDLF+N +PKMVVFLGGWFSHTKLASAGKMSIKSLVRPSVTRPSL
Sbjct: 190 NDIESGRCQHNG--NNDLFVN-QPKMVVFLGGWFSHTKLASAGKMSIKSLVRPSVTRPSL 249

Query: 187 VRGFKNLIQLCREKQHYEKVNKKKRSIIGV 214
           V G KNLIQLCREK+HYEKVNKKKRSIIGV
Sbjct: 250 VGGLKNLIQLCREKRHYEKVNKKKRSIIGV 276

[Close]
BLAST of Cucsat.G12923 vs. NCBI nr
Match: XP_038899214.1 (uncharacterized protein LOC120086568 [Benincasa hispida])

HSP 1 Score: 375 bits (962), Expect = 4.02e-129
Identity = 187/208 (89.90%), Postives = 196/208 (94.23%), Query Frame = 0 

Query: 7   DIQVRRSATVAELKGAVELVFSHMPQHGPGKISWLHVWWHFCLCYAGQKLVDDADYIASF 66
           DIQV+RSATVAELKGAVE VFSHMPQ+GPGKISWLHVWWHFCLCYAGQKLVDDADYIA+F
Sbjct: 72  DIQVKRSATVAELKGAVESVFSHMPQNGPGKISWLHVWWHFCLCYAGQKLVDDADYIANF 131

Query: 67  GIKDGDQLQFVRHVTTGYNVIRKQSKKLVVSSKLISRISSRSKNFKQNDQKDMERYNYND 126
           GIKDGDQLQFVRHVTTGYN IRKQSKK VVSSKL+SRIS RSKN++QNDQ+DMERYNYND
Sbjct: 132 GIKDGDQLQFVRHVTTGYNAIRKQSKKCVVSSKLLSRISYRSKNYEQNDQEDMERYNYND 191

Query: 127 IESGRCQHSGSNNNDLFMNHEPKMVVFLGGWFSHTKLASAGKMSIKSLVRPSVTRPSLVR 186
           IESGR QH G  NN+LFMNHEPKMVVFLGGWFSHTKLASAGK  I SLVRPS TRPSLVR
Sbjct: 192 IESGRFQHHG--NNELFMNHEPKMVVFLGGWFSHTKLASAGKTRINSLVRPSGTRPSLVR 251

Query: 187 GFKNLIQLCREKQHYEKVNKKKRSIIGV 214
           GFKNLIQLCREK+HYEKVNKKKRSIIGV
Sbjct: 252 GFKNLIQLCREKRHYEKVNKKKRSIIGV 277

[Close]
BLAST of Cucsat.G12923 vs. NCBI nr
Match: XP_008466420.1 (PREDICTED: uncharacterized protein LOC103503833 [Cucumis melo] >TYK31439.1 U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 374 bits (960), Expect = 7.82e-129
Identity = 192/210 (91.43%), Postives = 200/210 (95.24%), Query Frame = 0 

Query: 7   DIQVRRSATVAELKGAVELVFSHMPQHGPGKISWLHVWWHFCLCYAGQKLVDDADYIASF 66
           DIQVRRSATVAELKGAVELVFSHMPQ+GPGKISWLHVWWHFCLCY GQKL+DDADYIASF
Sbjct: 70  DIQVRRSATVAELKGAVELVFSHMPQNGPGKISWLHVWWHFCLCYDGQKLIDDADYIASF 129

Query: 67  GIKDGDQLQFVRHVTTGYNVIRKQSKKLVVSSKLISRISSRSKNFKQNDQKDMERYNY-- 126
           GIKDGDQLQFVRHVTTGYNVIRKQSKK  VSSKLISRISSRSK+FKQNDQKDMERYNY  
Sbjct: 130 GIKDGDQLQFVRHVTTGYNVIRKQSKKREVSSKLISRISSRSKSFKQNDQKDMERYNYKY 189

Query: 127 NDIESGRCQHSGSNNNDLFMNHEPKMVVFLGGWFSHTKLASAGKMSIKSLVRPSVTRPSL 186
           NDIESGRCQH+G  N+DLF+N +PKMVVFLGGWFSHTKLASAGKMSIKSLVRPSVTRPSL
Sbjct: 190 NDIESGRCQHNG--NDDLFVN-QPKMVVFLGGWFSHTKLASAGKMSIKSLVRPSVTRPSL 249

Query: 187 VRGFKNLIQLCREKQHYEKVNKKKRSIIGV 214
           V G KNLIQLCREK+HYEKVNKKKRSIIGV
Sbjct: 250 VGGLKNLIQLCREKRHYEKVNKKKRSIIGV 276

[Close]
BLAST of Cucsat.G12923 vs. NCBI nr
Match: KAG6591566.1 (hypothetical protein SDJN03_13912, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 332 bits (851), Expect = 4.21e-113
Identity = 168/206 (81.55%), Postives = 184/206 (89.32%), Query Frame = 0 

Query: 6   SDIQVRRSATVAELKGAVELVFSHMPQHGPGKISWLHVWWHFCLCYAGQKLVDDADYIAS 65
           +DIQV+RSATVAELKGAVE VFSHMPQ+GPGKISWLHVWW+FCLCYAGQKLVDD DYIA+
Sbjct: 4   TDIQVKRSATVAELKGAVESVFSHMPQNGPGKISWLHVWWYFCLCYAGQKLVDDTDYIAN 63

Query: 66  FGIKDGDQLQFVRHVTTGYNVIRKQSKKLVVSSKLISRISSRSKNFKQNDQKDMERYNYN 125
           FGIKDGDQLQFVRHVTTGYNV+RKQSKK VVSSKL+SRISSRSK++KQND++DMERY YN
Sbjct: 64  FGIKDGDQLQFVRHVTTGYNVMRKQSKKWVVSSKLLSRISSRSKSYKQNDKEDMERY-YN 123

Query: 126 DIESGRCQHSGSNNNDLFMNHEPKMVVFLGGWFSHTKLASAGKMSIKSLVRPSVTRPSLV 185
           D ESGR QH G+N        EPK+V+FLGGWFSHTK AS GK SI SL RPS +RPSLV
Sbjct: 124 DAESGRFQHHGNN--------EPKVVLFLGGWFSHTKQASTGKRSINSLARPSGSRPSLV 183

Query: 186 RGFKNLIQLCREKQHYEKVNKKKRSI 211
           RGFKNLIQLCREK+HYEKVNK KRSI
Sbjct: 184 RGFKNLIQLCREKRHYEKVNKNKRSI 200

[Close]
BLAST of Cucsat.G12923 vs. ExPASy TrEMBL
Match: A0A0A0LH97 (Ubiquitin-like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G877630 PE=4 SV=1)

HSP 1 Score: 416 bits (1069), Expect = 9.82e-146
Identity = 206/208 (99.04%), Postives = 208/208 (100.00%), Query Frame = 0 

Query: 7   DIQVRRSATVAELKGAVELVFSHMPQHGPGKISWLHVWWHFCLCYAGQKLVDDADYIASF 66
           DIQVRRSATVAELKGAVELVFSHMPQHGPGKISWLHVWWHFCLCYAGQKLVDDADYIASF
Sbjct: 70  DIQVRRSATVAELKGAVELVFSHMPQHGPGKISWLHVWWHFCLCYAGQKLVDDADYIASF 129

Query: 67  GIKDGDQLQFVRHVTTGYNVIRKQSKKLVVSSKLISRISSRSKNFKQNDQKDMERYNYND 126
           GIKDGDQLQFVRHVTTGYNVIRKQSKKLVVSSKLISRISSRSK+FKQNDQKDMERYNYND
Sbjct: 130 GIKDGDQLQFVRHVTTGYNVIRKQSKKLVVSSKLISRISSRSKSFKQNDQKDMERYNYND 189

Query: 127 IESGRCQHSGSNNNDLFMNHEPKMVVFLGGWFSHTKLASAGKMSIKSLVRPSVTRPSLVR 186
           IESGRCQHSGSNNNDLFMNHEPKMVVFLGGWFSHTKLASAGKMSIKSLVRPSVTRPSLVR
Sbjct: 190 IESGRCQHSGSNNNDLFMNHEPKMVVFLGGWFSHTKLASAGKMSIKSLVRPSVTRPSLVR 249

Query: 187 GFKNLIQLCREKQHYEKVNKKKRSIIGV 214
           GFKNLIQLCREK+HYEKVNKKKRSIIGV
Sbjct: 250 GFKNLIQLCREKRHYEKVNKKKRSIIGV 277

[Close]
BLAST of Cucsat.G12923 vs. ExPASy TrEMBL
Match: A0A5A7T9I3 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold92G003750 PE=4 SV=1)

HSP 1 Score: 376 bits (965), Expect = 6.56e-130
Identity = 193/210 (91.90%), Postives = 200/210 (95.24%), Query Frame = 0 

Query: 7   DIQVRRSATVAELKGAVELVFSHMPQHGPGKISWLHVWWHFCLCYAGQKLVDDADYIASF 66
           DIQVRRSATVAELKGAVELVFSHMPQ+GPGKISWLHVWWHFCLCY GQKL+DDADYIASF
Sbjct: 70  DIQVRRSATVAELKGAVELVFSHMPQNGPGKISWLHVWWHFCLCYDGQKLIDDADYIASF 129

Query: 67  GIKDGDQLQFVRHVTTGYNVIRKQSKKLVVSSKLISRISSRSKNFKQNDQKDMERYNY-- 126
           GIKDGDQLQFVRHVTTGYNVIRKQSKK  VSSKLISRISSRSK+FKQNDQKDMERYNY  
Sbjct: 130 GIKDGDQLQFVRHVTTGYNVIRKQSKKREVSSKLISRISSRSKSFKQNDQKDMERYNYKY 189

Query: 127 NDIESGRCQHSGSNNNDLFMNHEPKMVVFLGGWFSHTKLASAGKMSIKSLVRPSVTRPSL 186
           NDIESGRCQH+G  NNDLF+N +PKMVVFLGGWFSHTKLASAGKMSIKSLVRPSVTRPSL
Sbjct: 190 NDIESGRCQHNG--NNDLFVN-QPKMVVFLGGWFSHTKLASAGKMSIKSLVRPSVTRPSL 249

Query: 187 VRGFKNLIQLCREKQHYEKVNKKKRSIIGV 214
           V G KNLIQLCREK+HYEKVNKKKRSIIGV
Sbjct: 250 VGGLKNLIQLCREKRHYEKVNKKKRSIIGV 276

[Close]
BLAST of Cucsat.G12923 vs. ExPASy TrEMBL
Match: A0A5D3E6G8 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G007520 PE=4 SV=1)

HSP 1 Score: 374 bits (960), Expect = 3.79e-129
Identity = 192/210 (91.43%), Postives = 200/210 (95.24%), Query Frame = 0 

Query: 7   DIQVRRSATVAELKGAVELVFSHMPQHGPGKISWLHVWWHFCLCYAGQKLVDDADYIASF 66
           DIQVRRSATVAELKGAVELVFSHMPQ+GPGKISWLHVWWHFCLCY GQKL+DDADYIASF
Sbjct: 70  DIQVRRSATVAELKGAVELVFSHMPQNGPGKISWLHVWWHFCLCYDGQKLIDDADYIASF 129

Query: 67  GIKDGDQLQFVRHVTTGYNVIRKQSKKLVVSSKLISRISSRSKNFKQNDQKDMERYNY-- 126
           GIKDGDQLQFVRHVTTGYNVIRKQSKK  VSSKLISRISSRSK+FKQNDQKDMERYNY  
Sbjct: 130 GIKDGDQLQFVRHVTTGYNVIRKQSKKREVSSKLISRISSRSKSFKQNDQKDMERYNYKY 189

Query: 127 NDIESGRCQHSGSNNNDLFMNHEPKMVVFLGGWFSHTKLASAGKMSIKSLVRPSVTRPSL 186
           NDIESGRCQH+G  N+DLF+N +PKMVVFLGGWFSHTKLASAGKMSIKSLVRPSVTRPSL
Sbjct: 190 NDIESGRCQHNG--NDDLFVN-QPKMVVFLGGWFSHTKLASAGKMSIKSLVRPSVTRPSL 249

Query: 187 VRGFKNLIQLCREKQHYEKVNKKKRSIIGV 214
           V G KNLIQLCREK+HYEKVNKKKRSIIGV
Sbjct: 250 VGGLKNLIQLCREKRHYEKVNKKKRSIIGV 276

[Close]
BLAST of Cucsat.G12923 vs. ExPASy TrEMBL
Match: A0A1S3CR65 (uncharacterized protein LOC103503833 OS=Cucumis melo OX=3656 GN=LOC103503833 PE=4 SV=1)

HSP 1 Score: 374 bits (960), Expect = 3.79e-129
Identity = 192/210 (91.43%), Postives = 200/210 (95.24%), Query Frame = 0 

Query: 7   DIQVRRSATVAELKGAVELVFSHMPQHGPGKISWLHVWWHFCLCYAGQKLVDDADYIASF 66
           DIQVRRSATVAELKGAVELVFSHMPQ+GPGKISWLHVWWHFCLCY GQKL+DDADYIASF
Sbjct: 70  DIQVRRSATVAELKGAVELVFSHMPQNGPGKISWLHVWWHFCLCYDGQKLIDDADYIASF 129

Query: 67  GIKDGDQLQFVRHVTTGYNVIRKQSKKLVVSSKLISRISSRSKNFKQNDQKDMERYNY-- 126
           GIKDGDQLQFVRHVTTGYNVIRKQSKK  VSSKLISRISSRSK+FKQNDQKDMERYNY  
Sbjct: 130 GIKDGDQLQFVRHVTTGYNVIRKQSKKREVSSKLISRISSRSKSFKQNDQKDMERYNYKY 189

Query: 127 NDIESGRCQHSGSNNNDLFMNHEPKMVVFLGGWFSHTKLASAGKMSIKSLVRPSVTRPSL 186
           NDIESGRCQH+G  N+DLF+N +PKMVVFLGGWFSHTKLASAGKMSIKSLVRPSVTRPSL
Sbjct: 190 NDIESGRCQHNG--NDDLFVN-QPKMVVFLGGWFSHTKLASAGKMSIKSLVRPSVTRPSL 249

Query: 187 VRGFKNLIQLCREKQHYEKVNKKKRSIIGV 214
           V G KNLIQLCREK+HYEKVNKKKRSIIGV
Sbjct: 250 VGGLKNLIQLCREKRHYEKVNKKKRSIIGV 276

[Close]
BLAST of Cucsat.G12923 vs. ExPASy TrEMBL
Match: A0A6J1FBK4 (uncharacterized protein LOC111442589 OS=Cucurbita moschata OX=3662 GN=LOC111442589 PE=4 SV=1)

HSP 1 Score: 332 bits (850), Expect = 2.56e-112
Identity = 168/205 (81.95%), Postives = 183/205 (89.27%), Query Frame = 0 

Query: 7   DIQVRRSATVAELKGAVELVFSHMPQHGPGKISWLHVWWHFCLCYAGQKLVDDADYIASF 66
           DIQV+RSATVAELKGAVE VFSHMPQ+GPGKISWLHVWW+FCLCYAGQKLVDD DYIA+F
Sbjct: 68  DIQVKRSATVAELKGAVESVFSHMPQNGPGKISWLHVWWYFCLCYAGQKLVDDTDYIANF 127

Query: 67  GIKDGDQLQFVRHVTTGYNVIRKQSKKLVVSSKLISRISSRSKNFKQNDQKDMERYNYND 126
           GIKDGDQLQFVRHVTTGYNV+RKQSKK VVSSKL+SRISSRSK++KQND++DMERY YND
Sbjct: 128 GIKDGDQLQFVRHVTTGYNVMRKQSKKWVVSSKLLSRISSRSKSYKQNDKEDMERY-YND 187

Query: 127 IESGRCQHSGSNNNDLFMNHEPKMVVFLGGWFSHTKLASAGKMSIKSLVRPSVTRPSLVR 186
            ESGR QH G+N        EPK+V+FLGGWFSHTK AS GK SI SL RPS +RPSLVR
Sbjct: 188 AESGRFQHHGNN--------EPKVVLFLGGWFSHTKQASTGKRSINSLARPSGSRPSLVR 247

Query: 187 GFKNLIQLCREKQHYEKVNKKKRSI 211
           GFKNLIQLCREK+HYEKVNK KRSI
Sbjct: 248 GFKNLIQLCREKRHYEKVNKNKRSI 263

The following BLAST results are available for this feature:
BLAST of Cucsat.G12923 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q84WS86.8e-0736.84U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Arabidopsis thaliana O... [more]
Q9BV901.1e-0432.88U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Homo sapiens OX=9606 G... [more]
Q8VIK11.8e-0431.51U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Mus musculus OX=10090 ... [more]
Q3ZBQ43.1e-0431.51U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Bos taurus OX=9913 GN=... [more]
BLAST of Cucsat.G12923 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004136480.12.03e-14599.04uncharacterized protein LOC101219460 [Cucumis sativus] >KGN60092.1 hypothetical ... [more]
KAA0038816.11.35e-12991.90U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like [Cucumis melo var. m... [more]
XP_038899214.14.02e-12989.90uncharacterized protein LOC120086568 [Benincasa hispida][more]
XP_008466420.17.82e-12991.43PREDICTED: uncharacterized protein LOC103503833 [Cucumis melo] >TYK31439.1 U11/U... [more]
KAG6591566.14.21e-11381.55hypothetical protein SDJN03_13912, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Cucsat.G12923 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LH979.82e-14699.04Ubiquitin-like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G877... [more]
A0A5A7T9I36.56e-13091.90U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like OS=Cucumis melo var.... [more]
A0A5D3E6G83.79e-12991.43U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like OS=Cucumis melo var.... [more]
A0A1S3CR653.79e-12991.43uncharacterized protein LOC103503833 OS=Cucumis melo OX=3656 GN=LOC103503833 PE=... [more]
A0A6J1FBK42.56e-11281.95uncharacterized protein LOC111442589 OS=Cucurbita moschata OX=3662 GN=LOC1114425... [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.10.20.90coord: 53..149
e-value: 1.3E-33
score: 116.9
NoneNo IPR availablePANTHERPTHR14942:SF2UBIQUITIN-LIKE SUPERFAMILY PROTEINcoord: 19..268
IPR040610SNRNP25, ubiquitin-like domainPFAMPF18036Ubiquitin_4coord: 59..143
e-value: 3.8E-25
score: 87.7
IPR040610SNRNP25, ubiquitin-like domainCDDcd17058Ubl_SNRNP25coord: 57..142
e-value: 1.6077E-34
score: 118.004
IPR039690U11/U12 small nuclear ribonucleoprotein 25kDa proteinPANTHERPTHR14942U11/U12 SMALL NUCLEAR RIBONUCLEOPROTEIN 25 KDA PROTEINcoord: 19..268
IPR000626Ubiquitin-like domainPROSITEPS50053UBIQUITIN_2coord: 57..146
score: 9.112214
IPR029071Ubiquitin-like domain superfamilySUPERFAMILY54236Ubiquitin-likecoord: 53..146

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsat.G12923.T34Cucsat.G12923.T34mRNA
Cucsat.G12923.T32Cucsat.G12923.T32mRNA
Cucsat.G12923.T9Cucsat.G12923.T9mRNA
Cucsat.G12923.T8Cucsat.G12923.T8mRNA
Cucsat.G12923.T7Cucsat.G12923.T7mRNA
Cucsat.G12923.T6Cucsat.G12923.T6mRNA
Cucsat.G12923.T5Cucsat.G12923.T5mRNA
Cucsat.G12923.T4Cucsat.G12923.T4mRNA
Cucsat.G12923.T3Cucsat.G12923.T3mRNA
Cucsat.G12923.T2Cucsat.G12923.T2mRNA
Cucsat.G12923.T1Cucsat.G12923.T1mRNA
Cucsat.G12923.T28Cucsat.G12923.T28mRNA
Cucsat.G12923.T29Cucsat.G12923.T29mRNA
Cucsat.G12923.T26Cucsat.G12923.T26mRNA
Cucsat.G12923.T27Cucsat.G12923.T27mRNA
Cucsat.G12923.T24Cucsat.G12923.T24mRNA
Cucsat.G12923.T25Cucsat.G12923.T25mRNA
Cucsat.G12923.T22Cucsat.G12923.T22mRNA
Cucsat.G12923.T23Cucsat.G12923.T23mRNA
Cucsat.G12923.T20Cucsat.G12923.T20mRNA
Cucsat.G12923.T21Cucsat.G12923.T21mRNA
Cucsat.G12923.T17Cucsat.G12923.T17mRNA
Cucsat.G12923.T16Cucsat.G12923.T16mRNA
Cucsat.G12923.T15Cucsat.G12923.T15mRNA
Cucsat.G12923.T14Cucsat.G12923.T14mRNA
Cucsat.G12923.T13Cucsat.G12923.T13mRNA
Cucsat.G12923.T12Cucsat.G12923.T12mRNA
Cucsat.G12923.T11Cucsat.G12923.T11mRNA
Cucsat.G12923.T10Cucsat.G12923.T10mRNA
Cucsat.G12923.T19Cucsat.G12923.T19mRNA
Cucsat.G12923.T18Cucsat.G12923.T18mRNA
Cucsat.G12923.T33Cucsat.G12923.T33mRNA
Cucsat.G12923.T31Cucsat.G12923.T31mRNA
Cucsat.G12923.T30Cucsat.G12923.T30mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008643 carbohydrate transport
biological_process GO:0000398 mRNA splicing, via spliceosome
biological_process GO:0015787 UDP-glucuronic acid transmembrane transport
biological_process GO:0015789 UDP-N-acetylgalactosamine transmembrane transport
biological_process GO:1990569 UDP-N-acetylglucosamine transmembrane transport
cellular_component GO:0005794 Golgi apparatus
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005689 U12-type spliceosomal complex
molecular_function GO:0015297 antiporter activity
molecular_function GO:0005515 protein binding
molecular_function GO:0005461 UDP-glucuronic acid transmembrane transporter activity
molecular_function GO:0005463 UDP-N-acetylgalactosamine transmembrane transporter activity
molecular_function GO:0005462 UDP-N-acetylglucosamine transmembrane transporter activity